Psyllid ID: psy15989

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEccccccccccccEEEEEEEcccccEEEEEEEEEcccEEEEccccccccccccccccccEEEEEccEEcccccccccEEEEEEEEEEEccccccccccccEEEEEEcccccccccEEEEEEccccccccccccEEEEEEEEEEccccccccccccccccccEEEEEEcccccccccEEEEEccccccccccccccEEEEEEccEEEEEEEEEEccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEcccccccccEEEEEccccccccccccccccccEEEEcccccccccccccccEEEEEEEcccccccccccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEcccccccccccEEEEEEEEccccccEEEEEEEEEccEEEEcHHHcccccccccccccEEEEEEEcccEcccccccccEEEEEEEEEEcccccccccccccEEEEEccccccEccEcccEccccccccccEEEccccEccccccccEEEEEEccEEEEEEEEEcccccccccccccEEEEcccccccccccccccEEEEEEccEEEEEEEEEccccccccccccccccEEEEEEEEEEEcccccccccccccEEEEEccccccEccEcccEcccccccccccccccccEEEEEEccccccccccHHHEEEEEEEEccHHHHHcccccccccccccEEEEcccc
Coil and Loop (DISEMBL)
mcyrdvscgtvvynkaqplvtygqktargqwpWHVALYRTEGINLSYVCGGSLVSVNYVITAAHcvtkkpydkpvdsdtLVIYLGKYhqhqfsdeggvqnkqvkrvhiyptfnssnylgdIALLQlssdvdysmyvrpvclwddstaplqlsavegtsvcngdsgggmvFKIDSAWYLRGIVSITvardglrvcdtKHYVVFTDvanvcngdsgggmvFKIDSAWYLRGIVSITvardglrvcdtkhyvvftdvkrvhiyptfnssnylgdIALLQlssdvdysmyvrpvclwddstaplqlsavegrdgtvigwgydendrVSEELKMAIMPIvshqqclwsnpqffsqftsdetfcagfrn
Flexible Loop (DISEMBL)
mcyrdvscgtvvynkaqpLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCvtkkpydkpVDSDTLVIYLGKYHQhqfsdeggvqnKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTsvcngdsggGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSItvardglrvCDTKHYVvftdvkrvhIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN
Low Complexity Region (SEG)
MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN
Disordered region (IsUnstruct)
**YRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA****
Disordered Region (DISOPRED)
MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ******VQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN
Disordered Region (DISEMBL)
MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN
Disordered Region (DISPRO)
*C**DVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
O62589	528	Serine protease gd OS=Dro	no	N/A	0.622	0.428	0.263	2e-20
P28175	1019	Limulus clotting factor C	N/A	N/A	0.578	0.206	0.307	5e-20
Q26422	1019	Limulus clotting factor C	N/A	N/A	0.581	0.207	0.321	7e-20
P00734	622	Prothrombin OS=Homo sapie	yes	N/A	0.564	0.329	0.303	5e-19
Q9ES87	342	Prostasin OS=Rattus norve	yes	N/A	0.567	0.602	0.300	6e-19
P19221	618	Prothrombin OS=Mus muscul	yes	N/A	0.622	0.365	0.298	8e-19
P18292	617	Prothrombin OS=Rattus nor	no	N/A	0.570	0.335	0.306	1e-18
Q9Y5Y6	855	Suppressor of tumorigenic	no	N/A	0.377	0.160	0.359	3e-18
Q28278	456	Vitamin K-dependent prote	no	N/A	0.658	0.524	0.279	5e-18
P21902	375	Proclotting enzyme OS=Tac	N/A	N/A	0.608	0.589	0.287	8e-18

>sp|O62589|GD_DROME Serine protease gd OS=Drosophila melanogaster GN=gd PE=1 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 123/266 (46%), Gaps = 40/266 (15%)

Query: 28  RGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKY 87
           RG WPW  A+Y     +L + CGGSLVS   VI++AHC   K ++K   S+ ++++LG++
Sbjct: 256 RGSWPWLAAIYVNNLTSLDFQCGGSLVSARVVISSAHCF--KLFNKRYTSNEVLVFLGRH 313

Query: 88  HQHQFSDEGGVQNKQVKRVHIYPTFNS--SNYLGDIALLQLSSDVDYSMYVRPVCLWDDS 145
           +   +++EG +    V  ++I+P FNS  S+Y  DIA++ L  +V ++ ++RP CLW  S
Sbjct: 314 NLKNWNEEGSLA-APVDGIYIHPDFNSQLSSYDADIAVIILKDEVRFNTFIRPACLWSGS 372

Query: 146 TAPLQLSAVEGTSV----------------------CNGDSGGGMVFK---IDSAWYLRG 180
           +    +    G  +                       + D+    V K   + +A   R 
Sbjct: 373 SKTEYIVGERGIVIGWSFDRTNRTRDQKLSSELPGKKSTDASAPKVVKAPIVGNAECFRA 432

Query: 181 ---IVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV-- 235
                S++  R        +        A++  G SG G+  + ++ W LRG VS  +  
Sbjct: 433 NAHFRSLSSNRTFCAGIQAEERDTHQSGASIYTGISGAGLFIRRNNRWMLRGTVSAALPA 492

Query: 236 -----ARDGLRVCDTKHYVVFTDVKR 256
                A    ++C    Y+++ DV +
Sbjct: 493 VETPDAESSHKLCCKNQYIIYADVAK 518

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|P28175|LFC_TACTR Limulus clotting factor C OS=Tachypleus tridentatus PE=1 SV=1

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 24/234 (10%)

Query: 18  PLVTYGQKTARGQWPWHVALYR-TEGINLSYV-CGGSLVSVNYVITAAHCVTKKPYDKPV 75
           P +  G  T  GQWPW   + R     N+ ++ CGGSL++  +++TAAHCVT     + +
Sbjct: 761 PFIWNGNSTEIGQWPWQAGISRWLADHNMWFLQCGGSLLNEKWIVTAAHCVTYSATAEII 820

Query: 76  DSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMY 135
           D     IYLGKY++    D+  VQ ++   +H+ P ++  N   DIAL+QL + V  +  
Sbjct: 821 DPSQFKIYLGKYYRDDSRDDDYVQVREALEIHVNPNYDPGNLNFDIALIQLKTPVTLTTR 880

Query: 136 VRPVCLWDDSTAPLQ-----LSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDG 190
           V+P+CL  D T         L+ V G  +   ++   M+ +      +  +V+ +   +G
Sbjct: 881 VQPICLPTDITTREHLKEGTLAVVTGWGLNENNTYSEMIQQA-----VLPVVAASTCEEG 935

Query: 191 LRVCDTKHYVVFTDVA--------NVCNGDSGGGMVFKIDS----AWYLRGIVS 232
            +  D    V              + C+GDSGG +VF  DS     W L GIVS
Sbjct: 936 YKEADLPLTVTENMFCAGYKKGRYDACSGDSGGPLVFADDSRTERRWVLEGIVS 989

This enzyme is closely associated with an endotoxin-sensitive hemolymph coagulation system which may play important roles in both hemostasis and host defense mechanisms. Its active form catalyzes the activation of factor B.

Tachypleus tridentatus (taxid: 6853)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 4

>sp|Q26422|LFC_CARRO Limulus clotting factor C OS=Carcinoscorpius rotundicauda PE=2 SV=1

 Score = 98.6 bits (244), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 22/233 (9%)

Query: 18  PLVTYGQKTARGQWPWHVALYR-TEGINLSYV-CGGSLVSVNYVITAAHCVTKKPYDKPV 75
           P +  G  T  GQWPW   + R     N+ ++ CGGSL++  +++TAAHCVT     + +
Sbjct: 761 PFIWNGNSTEIGQWPWQAGISRWLADHNMWFLQCGGSLLNEKWIVTAAHCVTYSATAEII 820

Query: 76  DSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMY 135
           D +   +YLGKY++    D+  VQ ++   +H+ P ++  N   DIAL+QL + V  +  
Sbjct: 821 DPNQFKMYLGKYYRDDSRDDDYVQVREALEIHVNPNYDPGNLNFDIALIQLKTPVTLTTR 880

Query: 136 VRPVCLWDDSTAPLQLSAVEGT-SVCNG---DSGGGMVFKIDSAWYLRGIVSITVARDGL 191
           V+P+CL  D T    L   EGT +V  G   +        I  A  +  +V+ +   +G 
Sbjct: 881 VQPICLPTDITTREHLK--EGTLAVVTGWGLNENNTYSETIQQA--VLPVVAASTCEEGY 936

Query: 192 RVCDTKHYVVFTDVA--------NVCNGDSGGGMVFKIDS----AWYLRGIVS 232
           +  D    V              + C+GDSGG +VF  DS     W L GIVS
Sbjct: 937 KEADLPLTVTENMFCAGYKKGRYDACSGDSGGPLVFADDSRTERRWVLEGIVS 989

This enzyme is closely associated with an endotoxin-sensitive hemolymph coagulation system which may play important roles in both hemostasis and host defense mechanisms. Its active form catalyzes the activation of factor B.

Carcinoscorpius rotundicauda (taxid: 6848)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 4

>sp|P00734|THRB_HUMAN Prothrombin OS=Homo sapiens GN=F2 PE=1 SV=2

 Score = 95.9 bits (237), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)

Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 364 IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 421

Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 422 LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 479

Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 480 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 535

Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 536 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 589

Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 5

>sp|Q9ES87|PRSS8_RAT Prostasin OS=Rattus norvegicus GN=Prss8 PE=2 SV=3

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 111/246 (45%), Gaps = 40/246 (16%)

Query: 5   DVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAH 64
           + SCG V+    QP +T G     GQWPW V++      N  +VCGGSLVS  +V++AAH
Sbjct: 34  EASCGAVI----QPRITGGGSAKPGQWPWQVSIT----YNGVHVCGGSLVSNQWVVSAAH 85

Query: 65  CVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALL 124
           C     + +    +   + LG +    FS++  V    V ++  + ++      GDIAL+
Sbjct: 86  C-----FPREHSKEEYEVKLGAHQLDSFSNDIVVHT--VAQIISHSSYREEGSQGDIALI 138

Query: 125 QLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSI 184
           +LSS V +S Y+RP+CL      P   ++      C   +G G V    S    R +  +
Sbjct: 139 RLSSPVTFSRYIRPICL------PAANASFPNGLHCT-VTGWGHVAPSVSLQTPRPLQQL 191

Query: 185 TVARDGLRVCD---------TKHYVVFTDV---------ANVCNGDSGGGMVFKIDSAWY 226
            V       C           + + +  D+          + C GDSGG +   ID  WY
Sbjct: 192 EVPLISRETCSCLYNINAVPEEPHTIQQDMLCAGYVKGGKDACQGDSGGPLSCPIDGLWY 251

Query: 227 LRGIVS 232
           L GIVS
Sbjct: 252 LAGIVS 257

Possesses a trypsin-like cleavage specificity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P19221|THRB_MOUSE Prothrombin OS=Mus musculus GN=F2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 119/258 (46%), Gaps = 32/258 (12%)

Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G    +G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 361 IVEGWDAEKGIAPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCILYPPWDKNFTEND 418

Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    +++++++P +N   N   DIALL+L   V +S Y+ 
Sbjct: 419 LLVRIGKHSRTRY--ERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 476

Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  T    L A           +  T   N +     V ++ +   +   V    
Sbjct: 477 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS 536

Query: 187 ARDGLRVCDTKHYVVF----TDVANVCNGDSGGGMVFK--IDSAWYLRGIVSITVARDGL 240
            R  +R+ D      F    T   + C GDSGG  V K   ++ WY  GIVS        
Sbjct: 537 TR--IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG---- 590

Query: 241 RVCDTK-HYVVFTDVKRV 257
             CD K  Y  +T V R+
Sbjct: 591 --CDRKGKYGFYTHVFRL 606

Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 5

>sp|P18292|THRB_RAT Prothrombin OS=Rattus norvegicus GN=F2 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 25/232 (10%)

Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G    +G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 360 IVEGWDAEKGIAPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCILYPPWDKNFTEND 417

Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    +++++I+P +N   N   DIALL+L   V +S Y+ 
Sbjct: 418 LLVRIGKHSRTRY--ERNVEKISMLEKIYIHPRYNWRENLDRDIALLKLKKPVPFSDYIH 475

Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  T    L A           +  T   N +     V ++ +   +   V    
Sbjct: 476 PVCLPDKQTVTSLLQAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS 535

Query: 187 ARDGLRVCDTKHYVVF----TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            R  +R+ D      F    T   + C GDSGG  V K   +  WY  GIVS
Sbjct: 536 TR--IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPYNHRWYQMGIVS 585

Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 5

>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 protein OS=Homo sapiens GN=ST14 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 4   RDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAA 63
           +D  CG   + + Q  V  G     G+WPW V+L+    +   ++CG SL+S N++++AA
Sbjct: 600 KDCDCGLRSFTR-QARVVGGTDADEGEWPWQVSLH---ALGQGHICGASLISPNWLVSAA 655

Query: 64  HCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL 123
           HC       +  D      +LG + Q Q S  G VQ +++KR+  +P FN   +  DIAL
Sbjct: 656 HCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPG-VQERRLKRIISHPFFNDFTFDYDIAL 714

Query: 124 LQLSSDVDYSMYVRPVCLWDDS 145
           L+L    +YS  VRP+CL D S
Sbjct: 715 LELEKPAEYSSMVRPICLPDAS 736

Degrades extracellular matrix. Proposed to play a role in breast cancer invasion and metastasis. Exhibits trypsin-like activity as defined by cleavage of synthetic substrates with Arg or Lys as the P1 site.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 9

>sp|Q28278|PROC_CANFA Vitamin K-dependent protein C OS=Canis familiaris GN=PROC PE=2 SV=2

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 123/272 (45%), Gaps = 33/272 (12%)

Query: 14  NKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDK 73
           ++  P +  G+ T RG+ PW V L  ++       CG  L+  ++V+TAAHC+       
Sbjct: 205 DQIDPRLVNGKVTRRGESPWQVVLLDSKK---KLACGAVLIHTSWVLTAAHCME------ 255

Query: 74  PVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYS 133
             DS  L++ LG+Y   ++  E G  +  +K V I+P ++ S    DIALL L+    +S
Sbjct: 256 --DSKKLIVRLGEYDLRRW--EKGEMDVDIKEVLIHPNYSKSTTDNDIALLHLAQPAIFS 311

Query: 134 MYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRV 193
             + P+CL D   A  +L+ V   +V  G   G       +  ++   ++I VA     +
Sbjct: 312 QTIVPICLPDSGLAERELTQVGQETVVTG--WGYRSETKRNRTFVLNFINIPVAPHNECI 369

Query: 194 CDTKHYV--------VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT 245
               + +        +  D  + C GDSGG MV      W+L G+VS          C  
Sbjct: 370 QAMYNMISENMLCAGILGDSRDACEGDSGGPMVTSFRGTWFLVGLVSWGEG------CGR 423

Query: 246 KH-YVVFTDVKRVHIYPTFNSSNYLGDIALLQ 276
            H Y ++T V R   Y  +  S+  G+ A L+
Sbjct: 424 LHNYGIYTKVSR---YLDWIHSHIRGEEASLE 452

Protein C is a vitamin K-dependent serine protease that regulates blood coagulation by inactivating factors Va and VIIIa in the presence of calcium ions and phospholipids.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 6

EC: 9

>sp|P21902|PCE_TACTR Proclotting enzyme OS=Tachypleus tridentatus PE=1 SV=1

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 12/233 (5%)

Query: 8   CGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVT 67
           CG  ++N     +  G++   G WPW  A+Y  +G   S  CGG+LV+  +VITA+HCV 
Sbjct: 118 CG--IHNTTTTRIIGGREAPIGAWPWMTAVYIKQGGIRSVQCGGALVTNRHVITASHCVV 175

Query: 68  KKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLS 127
                  + +D   + LG+++ +   D+    +  V  V  +  F  + YL DIA+L L+
Sbjct: 176 NSAGTDVMPADVFSVRLGEHNLYSTDDDSNPIDFAVTSVKHHEHFVLATYLNDIAILTLN 235

Query: 128 SDVDYSMYVRPVCL------WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGI 181
             V ++  +RP+CL      +DD           GT+  NG S   ++ ++    +    
Sbjct: 236 DTVTFTDRIRPICLPYRKLRYDDLAMRKPFITGWGTTAFNGPS-SAVLREVQLPIWEHEA 294

Query: 182 VSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKIDSA-WYLRGIVS 232
                 +D L + +      F D   + C GDSGG M+  + +  +YL GIVS
Sbjct: 295 CRQAYEKD-LNITNVYMCAGFADGGKDACQGDSGGPMMLPVKTGEFYLIGIVS 346

This enzyme is closely associated with an endotoxin-sensitive hemolymph coagulation system in limulus. Its active form catalyzes the conversion of coagulogen to insoluble coagulin gel.

Tachypleus tridentatus (taxid: 6853)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
242025200	1033	hypothetical protein Phum_PHUM609370 [Pe	0.672	0.236	0.457	5e-55
189239809	572	PREDICTED: similar to hemolymph proteina	0.683	0.433	0.426	7e-51
270012762	561	serine protease P68 [Tribolium castaneum	0.683	0.442	0.425	3e-50
56418419	548	hemolymph proteinase 19 [Manduca sexta]	0.542	0.359	0.405	1e-45
328700395	558	PREDICTED: hypothetical protein LOC10016	0.418	0.272	0.625	6e-45
157112721	534	hypothetical protein AaeL_AAEL006253 [Ae	0.674	0.458	0.403	2e-44
347965754	563	AGAP001366-PA [Anopheles gambiae str. PE	0.666	0.429	0.426	3e-43
170042754	539	conserved hypothetical protein [Culex qu	0.688	0.463	0.403	3e-43
189239807	467	PREDICTED: similar to CG9649 CG9649-PA [	0.548	0.426	0.386	1e-39
270012763	477	serine protease P69 [Tribolium castaneum	0.539	0.410	0.371	2e-37

>gi|242025200|ref|XP_002433014.1| hypothetical protein Phum_PHUM609370 [Pediculus humanus corporis] gi|212518523|gb|EEB20276.1| hypothetical protein Phum_PHUM609370 [Pediculus humanus corporis]

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 168/271 (61%), Gaps = 27/271 (9%)

Query: 4    RDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAA 63
            R   CGT    +  PL+T+GQ T+RGQWPWHVALY+  G +L++ CGGSL++  YV+TAA
Sbjct: 763  RYQECGTPSI-QPSPLITHGQLTSRGQWPWHVALYKNVGTDLTFFCGGSLINNKYVLTAA 821

Query: 64   HCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL 123
            HCVTK    +P+D +TLV+YLGKYH   +S EGGVQN+QV ++ ++P +NS+++  DIA+
Sbjct: 822  HCVTKTYTTQPLDENTLVVYLGKYHLKLWS-EGGVQNRQVFKITVHPKYNSTDFRSDIAV 880

Query: 124  LQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG---TSVCNGDSGGGMVFKIDSAWYLRG 180
            L+L++ V+YS YVRP+C+WD +    ++  VEG   T V  G     M+ +      LR 
Sbjct: 881  LELTTPVEYSDYVRPICMWDRTNT--RIEEVEGKLGTVVGWGFDEHKMLTE-----ELRQ 933

Query: 181  IVSITVARDGLRVCDTKHYVVFT----------DVANVCNGDSGGGMVFKID-----SAW 225
                 V +          Y  FT          +  +VCNGDSGGGMVF          W
Sbjct: 934  AKMPVVEQKTCLWSYPDFYPQFTSNMTYCAGFKNGTSVCNGDSGGGMVFPYKDRTGIERW 993

Query: 226  YLRGIVSITVARDGLRVCDTKHYVVFTDVKR 256
            +LRGIVSI+ AR+  RVCDT HYVVFTDV +
Sbjct: 994  HLRGIVSISPARNDSRVCDTSHYVVFTDVAK 1024

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239809|ref|XP_970870.2| PREDICTED: similar to hemolymph proteinase 19 [Tribolium castaneum]

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 116/272 (42%), Positives = 156/272 (57%), Gaps = 24/272 (8%)

Query: 1   MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVI 60
           +  R+V CGTV   KA PL++YGQ T +GQWPWHVALY  +G  L Y CGG+L+S N+V+
Sbjct: 298 LSKRNVGCGTVAM-KASPLISYGQNTTQGQWPWHVALYHIQGAQLLYTCGGTLISENHVL 356

Query: 61  TAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGD 120
           TAAHCV K   ++P+D+  L +YLGKYH  +F D  G Q++ V  + I+P +N S Y  D
Sbjct: 357 TAAHCVAKPQTNRPIDTKDLSVYLGKYHLKKFGD--GTQDRDVTDIFIHPQYNYSVYFND 414

Query: 121 IALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRG 180
           IA+L+L +  D + YVRP CLW+D T    +    GT V     G G   K   +  L  
Sbjct: 415 IAVLKLKTPADLNNYVRPCCLWEDGTDIEYVLNKLGTVV-----GWGFDEKRQISDTLMQ 469

Query: 181 IVSITVARDGLRVCDTKHYVVFT----------DVANVCNGDSGGGMVFKI------DSA 224
                V+       + + +  FT          +   VCNGDSGGGMVF        ++ 
Sbjct: 470 AQMPVVSTVNCIYSNREFFSQFTFEKTYCAGFRNGTTVCNGDSGGGMVFPKAGTSGHNTV 529

Query: 225 WYLRGIVSITVARDGLRVCDTKHYVVFTDVKR 256
           W +RGIVS+ VA  G  VCD +HY+VFTDV +
Sbjct: 530 WQIRGIVSVGVALQGQGVCDPRHYIVFTDVAK 561

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012762|gb|EFA09210.1| serine protease P68 [Tribolium castaneum]

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 117/275 (42%), Positives = 156/275 (56%), Gaps = 27/275 (9%)

Query: 1   MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVI 60
           +  R+V CGTV   KA PL++YGQ T +GQWPWHVALY  +G  L Y CGG+L+S N+V+
Sbjct: 284 LSKRNVGCGTVAM-KASPLISYGQNTTQGQWPWHVALYHIQGAQLLYTCGGTLISENHVL 342

Query: 61  TAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGD 120
           TAAHCV K   ++P+D+  L +YLGKYH  +F D  G Q++ V  + I+P +N S Y  D
Sbjct: 343 TAAHCVAKPQTNRPIDTKDLSVYLGKYHLKKFGD--GTQDRDVTDIFIHPQYNYSVYFND 400

Query: 121 IALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRG 180
           IA+L+L +  D + YVRP CLW+D T    +    GT V     G G   K   +  L  
Sbjct: 401 IAVLKLKTPADLNNYVRPCCLWEDGTDIEYVLNKLGTVV-----GWGFDEKRQISDTLMQ 455

Query: 181 IVSITVARDGLRVCDTKHYVVFT------------DVA-NVCNGDSGGGMVFKI------ 221
                V+       + + +  FT            D    VCNGDSGGGMVF        
Sbjct: 456 AQMPVVSTVNCIYSNREFFSQFTFEKTYCAGFRNEDAGTTVCNGDSGGGMVFPKAGTSGH 515

Query: 222 DSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR 256
           ++ W +RGIVS+ VA  G  VCD +HY+VFTDV +
Sbjct: 516 NTVWQIRGIVSVGVALQGQGVCDPRHYIVFTDVAK 550

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56418419|gb|AAV91017.1| hemolymph proteinase 19 [Manduca sexta]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/254 (40%), Positives = 141/254 (55%), Gaps = 57/254 (22%)

Query: 8   CGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVT 67
           CG V+ N   PLV  G  T  GQWPW +A+Y+T+ ++  Y+CGG+L+S  ++ITAAHCVT
Sbjct: 284 CGRVLLNNPIPLVVNGTPTLEGQWPWQIAVYQTQTVDNKYICGGTLISHKHIITAAHCVT 343

Query: 68  KKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLS 127
           +K   + V+ +TL +YLGK++     D  GVQ K V+++ ++P +N+S +  D+A+L+L 
Sbjct: 344 RKGSRRVVNKNTLTVYLGKHNLRTSVD--GVQIKFVEKIILHPMYNASTFTSDLAILELR 401

Query: 128 SDVDYSMYVRPVCLWDDSTAPL-----------------------QLSAVE--------- 155
             V YS +V+P CLW D+   L                       +LS VE         
Sbjct: 402 ESVTYSNWVQPACLWPDNAINLSNVIGKKGSVVGWGFDETGVATEELSLVEMPVVDTETC 461

Query: 156 -----------------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLR 192
                                  GTSVCNGDSGGGMVFKI   WYLRG+VS++VAR    
Sbjct: 462 IRSYSEFFIRFTSEYTYCAGYRDGTSVCNGDSGGGMVFKIGDYWYLRGLVSLSVARQNEF 521

Query: 193 VCDTKHYVVFTDVA 206
            CD  HYVVFTD+A
Sbjct: 522 RCDPSHYVVFTDLA 535

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700395|ref|XP_001945731.2| PREDICTED: hypothetical protein LOC100164494 [Acyrthosiphon pisum]

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 97/155 (62%), Positives = 114/155 (73%), Gaps = 3/155 (1%)

Query: 6   VSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHC 65
           +SCG V      PLVT GQ T RGQWPWHVALY  EGINLSY CGGSLVS N VITAAHC
Sbjct: 353 MSCGEVKM--VVPLVTSGQSTKRGQWPWHVALYLIEGINLSYHCGGSLVSKNKVITAAHC 410

Query: 66  VTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ 125
           VT+K  D   +S  LV+YLGKYHQ Q+SDE GVQ KQV R+ +YPT+NSS+Y GDIA+L 
Sbjct: 411 VTQKLNDAVFNSTKLVVYLGKYHQLQYSDELGVQIKQVIRIKVYPTYNSSSYFGDIAMLT 470

Query: 126 LSSDVDYSMYVRPVCLWDDSTAPL-QLSAVEGTSV 159
           LSSD +++ YV PVCLW++ +  L  +   EGT V
Sbjct: 471 LSSDAEFTNYVTPVCLWEERSDDLDDIVEKEGTVV 505

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112721|ref|XP_001657616.1| hypothetical protein AaeL_AAEL006253 [Aedes aegypti] gi|108877964|gb|EAT42189.1| AAEL006253-PA [Aedes aegypti]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 150/255 (58%), Gaps = 10/255 (3%)

Query: 8   CGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVT 67
           CGTVV  KA PLV +G      Q+PWH ALYR+    L Y+CG +L+S   ++TAAHCV 
Sbjct: 275 CGTVV-PKANPLVVHGNSAQHAQFPWHGALYRSSVTELRYLCGSTLISTRLILTAAHCVA 333

Query: 68  KKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLS 127
            +   +P+D+D+L++YLGK +  +++  G  Q+ +V+R+HI+P +N   +  D+ALL+L 
Sbjct: 334 LEKSRRPIDADSLLVYLGKTNLKKWN--GPEQDAKVERIHIHPDYNYERFFADVALLRLK 391

Query: 128 SDVDYSMYVRPVCLWD-DSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           SDV Y  +VRP CLW  D    + ++ + G     G +  G+V +  S   +  +   T 
Sbjct: 392 SDVKYDNFVRPACLWSFDEDYKVLINKI-GFVPGWGYNERGLVSEELSFAQMPVVAHETC 450

Query: 187 ---ARDGLR--VCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLR 241
               RD       +T +   F +  +VCNGDSGGGMVFK  + WYLRGIVS++ A     
Sbjct: 451 IWSNRDFFSKVTSNTSYCAGFRNGTSVCNGDSGGGMVFKQSNRWYLRGIVSVSAALQDKI 510

Query: 242 VCDTKHYVVFTDVKR 256
            CD  H+ VFTDV +
Sbjct: 511 TCDPNHFAVFTDVAK 525

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965754|ref|XP_321777.4| AGAP001366-PA [Anopheles gambiae str. PEST] gi|333470368|gb|EAA43206.4| AGAP001366-PA [Anopheles gambiae str. PEST]

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 149/258 (57%), Gaps = 16/258 (6%)

Query: 8   CGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVT 67
           CGTVV  KA PLVT+G  + RGQ+PWH ALYR+    L Y+CG +L+S    ITAAHCVT
Sbjct: 304 CGTVV-PKANPLVTHGTVSERGQFPWHGALYRSTVTELKYLCGATLISRRASITAAHCVT 362

Query: 68  KKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLS 127
            +   KPVD+ +L++Y GK    +++  G  ++ Q++ +HI   +    +  DIA+L L 
Sbjct: 363 LEKSSKPVDAGSLLLYFGKIDLSKWN--GPEEDAQIRSIHIPAQYQHERFFNDIAVLVLK 420

Query: 128 SDVDYSMYVRPVCLW--DDSTAPL--QLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
            D+ YS +VRPVCLW  DD    L  ++  V G     G +  G+V    S   +  +  
Sbjct: 421 EDIKYSNFVRPVCLWNFDDDYKTLINKIGFVPGW----GYNEHGLVSSRLSFAQMPVVAH 476

Query: 184 ITVA---RDGLR--VCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARD 238
            T     RD       DT     F +  +VCNGDSGGGMVFK ++ WYLRGIVS++ A  
Sbjct: 477 ETCIWSNRDFFSKVTSDTSFCAGFKNGTSVCNGDSGGGMVFKHNNLWYLRGIVSVSAALQ 536

Query: 239 GLRVCDTKHYVVFTDVKR 256
               CD+KHYVVFTD  +
Sbjct: 537 DRFHCDSKHYVVFTDAAK 554

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170042754|ref|XP_001849079.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167866222|gb|EDS29605.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/260 (40%), Positives = 152/260 (58%), Gaps = 10/260 (3%)

Query: 3   YRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITA 62
           Y +  CGTVV  KA PLVT+G      Q+PWH ALYR+    L Y+CG +L+S  + +TA
Sbjct: 275 YDEDICGTVV-PKANPLVTHGAPAQNAQFPWHGALYRSSVTELRYLCGSTLISARFALTA 333

Query: 63  AHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIA 122
           AHCV  +   KPV+SD+L++YLGK +  +++  G  Q+ +++R+ I+P +N   +  DIA
Sbjct: 334 AHCVALEKSLKPVESDSLLLYLGKTNLKKWT--GPEQDAKLERIIIHPDYNYERFFADIA 391

Query: 123 LLQLSSDVDYSMYVRPVCLWD-DSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGI 181
           LL+L  DV ++ +VRP CLW+ D    + ++ V G     G +  G+V +  S   +  +
Sbjct: 392 LLRLKDDVKFNHFVRPACLWNFDEDYKVMINKV-GFVPGWGYTERGLVSEELSFAQMPVV 450

Query: 182 VSITVA---RDGLR--VCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVA 236
              T     RD       +T     F +  +VCNGDSGGGMVFK  + WYLRGIVS++ A
Sbjct: 451 AHETCIWSNRDFFSKVTSNTSFCAGFRNGTSVCNGDSGGGMVFKQSNKWYLRGIVSVSAA 510

Query: 237 RDGLRVCDTKHYVVFTDVKR 256
                 CD  H+ VFTDV +
Sbjct: 511 LQNHVSCDPNHFAVFTDVAK 530

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239807|ref|XP_970805.2| PREDICTED: similar to CG9649 CG9649-PA [Tribolium castaneum]

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 141/251 (56%), Gaps = 52/251 (20%)

Query: 6   VSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHC 65
            +CGTVV    +PL+T+GQ T  G++PWH ALY   GI+L+Y+CG SL++  +++T AHC
Sbjct: 208 AACGTVVM-PPRPLITHGQATHEGEFPWHAALYHATGIDLTYICGASLITRYHLLTVAHC 266

Query: 66  VTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ 125
           VTK    + +D  +LV+YLGKY+  ++S+  G+Q+K V ++ ++P + S  +  DIA+L+
Sbjct: 267 VTKPKSQEKLDPGSLVVYLGKYYLKRWSNP-GIQDKHVDKITVHPDYKSQVFTNDIAILR 325

Query: 126 LSSDVDYSMYVRP---------VCLW---DDSTAPLQLSAVE------------------ 155
           ++S V+ + YVRP         V  W   ++     QL+  +                  
Sbjct: 326 MASPVELTNYVRPGKIYLIVGTVVGWGFDENGRVTEQLTKAKMPVVSQETCIYSFPDFYS 385

Query: 156 --------------GTSVCNGDSGGGMVFKIDSA------WYLRGIVSITVARDGLRVCD 195
                         GTSVCNGDSGGGMVF   ++      W LRG+VSI+VA      CD
Sbjct: 386 RFTSDKTYCAGFKNGTSVCNGDSGGGMVFPKSNSNLNNPTWQLRGLVSISVALQNQLKCD 445

Query: 196 TKHYVVFTDVA 206
             HYVVFTDVA
Sbjct: 446 ASHYVVFTDVA 456

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012763|gb|EFA09211.1| serine protease P69 [Tribolium castaneum]

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/264 (37%), Positives = 140/264 (53%), Gaps = 68/264 (25%)

Query: 6   VSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHC 65
            +CGTVV    +PL+T+GQ T  G++PWH ALY   GI+L+Y+CG SL++  +++T AHC
Sbjct: 208 AACGTVVM-PPRPLITHGQATHEGEFPWHAALYHATGIDLTYICGASLITRYHLLTVAHC 266

Query: 66  VTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ 125
           VTK    + +D  +LV+YLGKY+  ++S+  G+Q+K V ++ ++P + S  +  DIA+L+
Sbjct: 267 VTKPKSQEKLDPGSLVVYLGKYYLKRWSNP-GIQDKHVDKITVHPDYKSQVFTNDIAILR 325

Query: 126 LSSDVDYSMYVRPVCLWDDSTAPLQLSAV---EGTSV----------------------- 159
           ++S V+ + YVRPVCLWD++T   QL AV    GT V                       
Sbjct: 326 MASPVELTNYVRPVCLWDENT---QLQAVINKAGTVVGWGFDENGRVTEQLTKAKMPVVS 382

Query: 160 ---------------------CNGDSGG----------GMVFKIDSA------WYLRGIV 182
                                C G   G          GMVF   ++      W LRG+V
Sbjct: 383 QETCIYSFPDFYSRFTSDKTYCAGFKNGTSVCNGDSGGGMVFPKSNSNLNNPTWQLRGLV 442

Query: 183 SITVARDGLRVCDTKHYVVFTDVA 206
           SI+VA      CD  HYVVFTDVA
Sbjct: 443 SISVALQNQLKCDASHYVVFTDVA 466

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
FB|FBgn0053329	528	Sp212 "Serine-peptidase 212" [	0.666	0.458	0.296	2.5e-24
FB|FBgn0000808	528	gd "gastrulation-defective" [D	0.319	0.219	0.380	1.2e-22
FB|FBgn0038211	504	CG9649 [Drosophila melanogaste	0.628	0.452	0.313	1.2e-22
UNIPROTKB|F1NLW7	843	ST14 "Uncharacterized protein"	0.589	0.253	0.336	5.4e-22
FB|FBgn0027563	439	CG9631 [Drosophila melanogaste	0.636	0.526	0.318	5.3e-21
UNIPROTKB|F1NZZ9	805	OVCH2 "Uncharacterized protein	0.592	0.267	0.278	2.5e-12
ZFIN|ZDB-GENE-030131-6496	834	st14a "suppression of tumorige	0.578	0.251	0.314	4.2e-20
UNIPROTKB|F1S6D6	856	ST14 "Uncharacterized protein"	0.611	0.259	0.313	4.4e-20
UNIPROTKB|F1Q314	628	PRSS33 "Uncharacterized protei	0.308	0.178	0.385	1.4e-19
RGD|621501	264	Ctrl "chymotrypsin-like" [Ratt	0.617	0.848	0.306	2.8e-19

FB|FBgn0053329 Sp212 "Serine-peptidase 212" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 2.5e-24, P = 2.5e-24
 Identities = 76/256 (29%), Positives = 124/256 (48%)

Query:     6 VSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHC 65
             V CG        P +  G +  RGQ+PW  A+Y  E   L++ CGGSL+S + VI+AAHC
Sbjct:   265 VVCGRE--GSTTPFIVRGNEFPRGQYPWLSAVYHKEVRALAFKCGGSLISSSIVISAAHC 322

Query:    66 VTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL-GDIALL 124
             V +      +  D +V+ LG+Y    + ++G  + + V R+  +P +N+ +Y   DIAL+
Sbjct:   323 VHR------MTEDRVVVGLGRYDLDDYGEDGA-EMRNVMRLLWHPDYNTRSYSDADIALI 375

Query:   125 QLSSDVDYSMYVRPVCLWD-DSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
              +   V ++  + P+C+W  +++  +  +        + DS      ++  A      V 
Sbjct:   376 TIERPVTFNDIIAPICMWTVEASRTVSTTGFIAGWGRDEDSSRTQYPRVVEAEIASPTVC 435

Query:   184 ITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC 243
              +  R G  V +        D +  C GDSGGG++ K    W LRGIVS    R     C
Sbjct:   436 ASTWR-GTMVTERSLCAGNRDGSGPCVGDSGGGLMVKQGDRWLLRGIVSAG-ERGPAGTC 493

Query:   244 DTKHYVVFTDVKRVHI 259
                 YV++ D+ + HI
Sbjct:   494 QLNQYVLYCDLSK-HI 508

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0009620 "response to fungus" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

FB|FBgn0000808 gd "gastrulation-defective" [Drosophila melanogaster (taxid:7227)]

 Score = 240 (89.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
 Identities = 46/121 (38%), Positives = 77/121 (63%)

Query:    28 RGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKY 87
             RG WPW  A+Y     +L + CGGSLVS   VI++AHC   K ++K   S+ ++++LG++
Sbjct:   256 RGSWPWLAAIYVNNLTSLDFQCGGSLVSARVVISSAHCF--KLFNKRYTSNEVLVFLGRH 313

Query:    88 HQHQFSDEGGVQNKQVKRVHIYPTFNS--SNYLGDIALLQLSSDVDYSMYVRPVCLWDDS 145
             +   +++EG +    V  ++I+P FNS  S+Y  DIA++ L  +V ++ ++RP CLW  S
Sbjct:   314 NLKNWNEEGSLA-APVDGIYIHPDFNSQLSSYDADIAVIILKDEVRFNTFIRPACLWSGS 372

Query:   146 T 146
             +
Sbjct:   373 S 373

GO:0008063 "Toll signaling pathway" evidence=IGI;NAS;TAS

GO:0009950 "dorsal/ventral axis specification" evidence=IGI;IMP;TAS

GO:0007311 "maternal specification of dorsal/ventral axis, oocyte, germ-line encoded" evidence=TAS

GO:0016485 "protein processing" evidence=IGI

GO:0005576 "extracellular region" evidence=ISS;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;TAS

GO:0008233 "peptidase activity" evidence=TAS

FB|FBgn0038211 CG9649 [Drosophila melanogaster (taxid:7227)]

 Score = 268 (99.4 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 80/255 (31%), Positives = 129/255 (50%)

Query:    18 PLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDS 77
             P +  G +  RGQ PW  AL+   G + +++CGG+L+S   VI+AAHC      + P   
Sbjct:   255 PFIHNGIEVERGQLPWMAALFEHVGRDYNFLCGGTLISARTVISAAHCFRFGSRNLP--G 312

Query:    78 DTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL-GDIALLQLSSDVDYSMYV 136
             +  ++ LG+     FS  G      V R+ I+  +N + Y   D+ALLQLS+ VD   Y+
Sbjct:   313 ERTIVSLGRNSLDLFSS-GATLG--VARLLIHEQYNPNVYTDADLALLQLSNHVDIGDYI 369

Query:   137 RPVCLWDDSTAPLQLSAVEGTSVCN-GDSGGG----MVFK-----IDSAWYLRGIVSITV 186
             +P+CLW+++   L+L +   + V   G+   G     + K     I + W  RG +S   
Sbjct:   370 KPICLWNENFL-LELPSGHKSYVAGWGEDEKGNRNTRLAKMTDTDIITQWECRGNLSEEN 428

Query:   187 ARDGLRVCDTKHYVVFTDV--ANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 244
             A+       T H +  ++   +  C+GDSGGG++ +    W LRG+VS    +     C+
Sbjct:   429 AK-----FITSHTICASNAQASGPCSGDSGGGLMLQEQDIWMLRGVVS--AGQRMTNRCN 481

Query:   245 TKHYVVFTDVKRVHI 259
                 V++TDV + HI
Sbjct:   482 LTLPVIYTDVAK-HI 495

GO:0004175 "endopeptidase activity" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NLW7 ST14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 267 (99.0 bits), Expect = 5.4e-22, P = 5.4e-22
 Identities = 79/235 (33%), Positives = 126/235 (53%)

Query:     7 SCGTVVYNKAQPLVTYGQKTARGQWPWHVALY-RTEGINLSYVCGGSLVSVNYVITAAHC 65
             +CGT  Y K   +V  GQ +  G+WPW V+L+ +++G    +VCG SL+S  ++++AAHC
Sbjct:   591 NCGTRSYIKKSRIVG-GQNSDVGEWPWQVSLHAKSQG----HVCGASLISETWLVSAAHC 645

Query:    66 VTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ 125
               +    +  D+     YLG  +Q + +D   VQ KQ+KR+  + +FN   Y  DIA+++
Sbjct:   646 FLELQGIRYSDASLWTAYLGLTNQSKRND-ANVQMKQIKRIISHRSFNDYTYDYDIAVIE 704

Query:   126 LSSDVDYSMYVRPVCLWDDSTAPLQLSA---VEGT-SVCNGDSGGGMVFKIDSAWYLRGI 181
             L S V +S  V+P+CL  DST    +     V G  +   G SG  ++ K +    +R +
Sbjct:   705 LQSPVTFSAVVQPICL-PDSTHNFPVGKDLWVTGWGATVEGGSGSTILQKAE----IR-V 758

Query:   182 VSITVARDGLRVCDTKHYV---VFTDVANVCNGDSGGGMVFKIDSA-WYLRGIVS 232
             ++ TV    L    T+  +   V T   + C GDSGG +V   +S   +L G+VS
Sbjct:   759 INQTVCNRLLTDQLTERMMCVGVLTGGVDACQGDSGGPLVSVENSGRMFLAGVVS 813

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

FB|FBgn0027563 CG9631 [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 5.3e-21, P = 5.3e-21
 Identities = 84/264 (31%), Positives = 130/264 (49%)

Query:     8 CGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLS-YVCGGSLVSVNYVITAAHCV 66
             CG   ++   PL   G    RGQ+PW  ALY  EG+  + Y C  S++S   VITAAHC+
Sbjct:   188 CGVEGFS---PLQIGGDLVTRGQYPWLAALY--EGVGTATYKCVVSVISKRTVITAAHCI 242

Query:    67 TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL--GDIALL 124
                 Y K   +  L +YLG++ +++ + E G     V  V + P+    N +   D+ LL
Sbjct:   243 ----YGK--SASQLWVYLGRHDRNE-NPENGASLVSVTSV-LTPSAYEGNPVPDADVGLL 294

Query:   125 QLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSI 184
              L+S + Y+ Y+RP+CLW  +   + L   EG +     +G G         + + +   
Sbjct:   295 VLTSPMVYTKYIRPLCLWGSN---MGLPPNEGDT--GAVAGWGYDRSAQKTRFPKTVSVR 349

Query:   185 TVARDGL-----RVCD--TKHYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV 235
              V RD       R  D  T+  V    ++    C GDSG  ++   ++ WY+RG+VS++ 
Sbjct:   350 LVPRDQCLKEMKRAEDFITRRTVCAGNSESHGPCFGDSGSALIVLRNNRWYVRGVVSLS- 408

Query:   236 ARDGLRVCDTKHYVVFTDVKRVHI 259
              R G  +CD   YV++ DV R HI
Sbjct:   409 PRHG-EICDLSKYVIYCDVAR-HI 430

GO:0004175 "endopeptidase activity" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1NZZ9 OVCH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 67/241 (27%), Positives = 112/241 (46%)

Query:    23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
             G++     WPW V++     I+  ++CGG++++  +VITAAHC   K   +    D  ++
Sbjct:   569 GEEAVPHSWPWQVSIQ----ISDQHICGGAVLAKEWVITAAHCFNSKELYR----DLWMV 620

Query:    83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
               G    H  +++   Q + VK+  I+P+FN +    DIALLQL+  ++++ YV PVCL 
Sbjct:   621 VTGI---HDLTEQEYRQKRSVKQYIIHPSFNKTTMDSDIALLQLAEPLEFNHYVHPVCLP 677

Query:   142 -WDDSTAPLQLSAVEGTSVCNGD-SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
               ++   P  +  + G      D      +++++    +             RV      
Sbjct:   678 AKEEVVQPSSVCIITGWGAQEEDREKSKKLYQLEVPILMLEACQTYYINLPSRVTQRMIC 737

Query:   200 VVFT--DVANVCNGDSGGGMVFKID--SAWY-LRGIVSITVARDGLRVCDTKHYV-VFTD 253
               F   +  + C GDSGG +V   +  S +Y L GI S      GL  C  K Y  V+T+
Sbjct:   738 AGFPLEEGKDSCTGDSGGPLVCPSEDGSGFYTLHGITSW-----GLG-CGRKSYPGVYTN 791

Query:   254 V 254
             V
Sbjct:   792 V 792

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-030131-6496 st14a "suppression of tumorigenicity 14 (colon carcinoma) a" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 4.2e-20, P = 4.2e-20
 Identities = 74/235 (31%), Positives = 121/235 (51%)

Query:     7 SCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
             +CGT  Y K++  +  GQ    G++PW V+L+     N+++VCGGS+++  +++TAAHCV
Sbjct:   586 NCGTKAYKKSR--IVGGQDAFEGEFPWQVSLHIK---NIAHVCGGSIINERWIVTAAHCV 640

Query:    67 ---TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL 123
                 K  Y +P    T  ++LG + Q    D+     + +K+V  +P +N+  Y  DIAL
Sbjct:   641 QDDVKIKYSQP---GTWEVFLGLHSQ---KDKLTATKRLLKQVIPHPYYNAYTYDNDIAL 694

Query:   124 LQLSSDVDYSMYVRPVCL-WDDSTAPLQLSA-VEGTSVCN-GDSGGGMVFKIDSAWYLRG 180
             +++ S V +S  +RPVCL     T P   S  + G      G SG  ++ K +    +R 
Sbjct:   695 MEMESPVTFSDTIRPVCLPTATDTFPAGTSVFISGWGATREGGSGATVLQKAE----VR- 749

Query:   181 IVSITVARD--GLRVCDTKHYV-VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             I++ TV     G ++        V +   + C GDSGG + F      +L G+VS
Sbjct:   750 IINSTVCNQLMGGQITSRMTCAGVLSGGVDACQGDSGGPLSFPSGKRMFLAGVVS 804

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

UNIPROTKB|F1S6D6 ST14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 73/233 (31%), Positives = 116/233 (49%)

Query:     4 RDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAA 63
             +D  CG   + + Q  V  G+    G+WPW V+L+    +   +VCG SL++ +++++AA
Sbjct:   601 KDCDCGLRAFTR-QSRVVGGENADEGEWPWQVSLH---ALGQGHVCGASLIAPSWMVSAA 656

Query:    64 HCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL 123
             HC       +  D+     +LG + Q + S  G VQ ++++R+  +P FN   +  DIAL
Sbjct:   657 HCFVDSRGFRYSDAKMWTAFLGLHDQSKRSVPG-VQERRLQRITFHPFFNDFTFDYDIAL 715

Query:   124 LQLSSDVDYSMYVRPVCLWDDS-TAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIV 182
             LQL   V+YS  VRP+CL D S T P    A+  T   +   GG     +     +R I 
Sbjct:   716 LQLDQPVEYSPTVRPICLPDASHTFPTG-KAIWVTGWGHTQEGGTGALILQKG-EIRVIN 773

Query:   183 SITVARD-GLRVCDTKHYVVF-TDVANVCNGDSGGGMV-FKIDSAWYLRGIVS 232
               T  R    ++ D    V + +   + C GDSGG +   + D   +L G+VS
Sbjct:   774 QTTCERLLPQQITDRMMCVGYLSGGVDACQGDSGGPLSSVESDGRMFLAGVVS 826

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1Q314 PRSS33 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
 Identities = 47/122 (38%), Positives = 73/122 (59%)

Query:    20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
             +  GQ    GQWPW V+L R  G    +VCGGSL++ ++V+TAAHC  +   ++P+ S  
Sbjct:    37 IVSGQDAQLGQWPWQVSL-RENG---EHVCGGSLIAEDWVLTAAHCFHQ---NQPLSS-- 87

Query:    80 LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
              V+ LG    +  +DE   + + V +  IYP ++     GDIAL+QL+S V+++  + PV
Sbjct:    88 YVVLLGSISSYPQADEPQ-EFQAVAQFIIYPDYSEKLGTGDIALVQLASPVNFTDLILPV 146

Query:   140 CL 141
             CL
Sbjct:   147 CL 148

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

RGD|621501 Ctrl "chymotrypsin-like" [Rattus norvegicus (taxid:10116)]

 Score = 232 (86.7 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 77/251 (30%), Positives = 119/251 (47%)

Query:    13 YNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYD 72
             YN  Q +V  G+    G WPW V+L    G +    CGGSL++ N+V+TAAHC       
Sbjct:    30 YN--QRIVN-GENAVPGSWPWQVSLQDNTGFHF---CGGSLIAPNWVVTAAHC------- 76

Query:    73 KPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDY 132
             K       VI LG+Y +   S+   +Q   + +   +P++N +    D+ LL+L+S   Y
Sbjct:    77 KVTPGRHFVI-LGEYDRS--SNAEPIQVLSISKAITHPSWNPNTMNNDLTLLKLASPARY 133

Query:   133 SMYVRPVCLWDDSTA-PLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARD-- 189
             +  V PVCL   + A P  L+ V  T+     SG G V        +  +V++   R   
Sbjct:   134 TAQVSPVCLASSNEALPAGLTCV--TTGWGRISGVGNVTPARLQQVVLPLVTVNQCRQYW 191

Query:   190 GLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV 249
             G R+ D+         A+ C GDSGG +V +  + W L GIVS      G   C+ +   
Sbjct:   192 GSRITDSMICAGGAG-ASSCQGDSGGPLVCQKGNTWVLIGIVSW-----GTENCNVQAPA 245

Query:   250 VFTDVKRVHIY 260
             ++T V + + +
Sbjct:   246 MYTRVSKFNTW 256

GO:0006508 "proteolysis" evidence=ISO

GO:0008233 "peptidase activity" evidence=ISO

GO:0008236 "serine-type peptidase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	363
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	5e-34
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	5e-33
pfam00089	218	pfam00089, Trypsin, Trypsin	2e-28
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	3e-18
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	2e-17
pfam00089	218	pfam00089, Trypsin, Trypsin	9e-16
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	2e-07

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  125 bits (315), Expect = 5e-34
 Identities = 70/242 (28%), Positives = 95/242 (39%), Gaps = 72/242 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +   G +PW V+L  T G    + CGGSL+S  +V+TAAHCV               +
Sbjct: 4   GSEAKIGSFPWQVSLQYTGG---RHFCGGSLISPRWVLTAAHCVYSSA------PSNYTV 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG +     S+EGG Q  +VK+V ++P +N S Y  DIALL+L   V  S  VRP+CL 
Sbjct: 55  RLGSHDL--SSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLP 112

Query: 142 ----------------W----DDSTAPLQLSAVE-------------------------- 155
                           W    +    P  L  V                           
Sbjct: 113 SSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCA 172

Query: 156 -----GTSVCNGDSGGGMVFKIDSAWYLRGIVS--ITVARDGLRVCDTKHYVVFTDVANV 208
                G   C GDSGG +V   +    L GIVS     AR         +  V+T V++ 
Sbjct: 173 GGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPN-------YPGVYTRVSSY 225

Query: 209 CN 210
            +
Sbjct: 226 LD 227

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  122 bits (308), Expect = 5e-33
 Identities = 73/248 (29%), Positives = 99/248 (39%), Gaps = 46/248 (18%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +   G +PW V+L    G    + CGGSL+S  +V+TAAHCV             + +
Sbjct: 5   GSEANIGSFPWQVSLQYGGG---RHFCGGSLISPRWVLTAAHCVRGSDPSN------IRV 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG    H  S     Q  +V +V I+P +N S Y  DIALL+L   V  S  VRP+CL 
Sbjct: 56  RLGS---HDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICL- 111

Query: 143 DDSTAPLQLSAVEGTSVCN----GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
                P     V   + C     G +  G     D+   L+  V++ +  +    C   +
Sbjct: 112 -----PSSNYNVPAGTTCTVSGWGRTSEGAGSLPDT---LQE-VNVPIVSN--ATCRRAY 160

Query: 199 YVVFTDVAN------------VCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 246
                   N             C GDSGG +V   D  W L GIVS      G       
Sbjct: 161 SGGGAITDNMLCAGGLEGGKDACQGDSGGPLVCN-DGRWVLVGIVSW-----GSGCARPG 214

Query: 247 HYVVFTDV 254
              V+T V
Sbjct: 215 KPGVYTRV 222

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  109 bits (275), Expect = 2e-28
 Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 42/244 (17%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +   G +PW V+L  + G    + CGGSL+S N+V+TAAHCV+        ++ ++ +
Sbjct: 4   GDEAQPGSFPWQVSLQVSSG---KHFCGGSLISENWVLTAAHCVS--------NAKSVRV 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG ++      EGG Q   VK+V ++P +N      DIALL+L S V     VRP+CL 
Sbjct: 53  VLGAHNIVL--REGGEQKFDVKKVIVHPNYNPDTD-NDIALLKLKSPVTLGDTVRPICLP 109

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
             S+         GT+     SG G    +     L+ +    V+R+    C + +    
Sbjct: 110 TASSDL-----PVGTTCTV--SGWGNTKTLGLPDTLQEVTVPVVSRE---TCRSAYGGTV 159

Query: 203 TD--------VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV-VFTD 253
           TD          + C GDSGG +V    S   L GIVS          C + +Y  V+T 
Sbjct: 160 TDNMICAGAGGKDACQGDSGGPLV---CSDGELIGIVS------WGYGCASGNYPGVYTP 210

Query: 254 VKRV 257
           V   
Sbjct: 211 VSSY 214

Length = 218

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
            VK+V ++P +N S Y  DIALL+L   V  S  VRP+CL              G   TV
Sbjct: 72  KVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNL-----PAGTTCTV 126

Query: 313 IGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            GWG   E   + + L+   +PIVS+ +C       +    +D   CAG 
Sbjct: 127 SGWGRTSEGGPLPDVLQEVNVPIVSNAEC--KRAYSYGGTITDNMLCAGG 174

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
            V +V I+P +N S Y  DIALL+L   V  S  VRP+CL   +          G   TV
Sbjct: 72  KVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNV-----PAGTTCTV 126

Query: 313 IGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            GWG   +    + + L+   +PIVS+  C            +D   CAG 
Sbjct: 127 SGWGRTSEGAGSLPDTLQEVNVPIVSNATC--RRAYSGGGAITDNMLCAGG 175

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 75.2 bits (185), Expect = 9e-16
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           DVK+V ++P +N      DIALL+L S V     VRP+CL   S+         G   TV
Sbjct: 70  DVKKVIVHPNYNPDTD-NDIALLKLKSPVTLGDTVRPICLPTASSDL-----PVGTTCTV 123

Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            GWG  +   + + L+   +P+VS + C       +    +D   CAG 
Sbjct: 124 SGWGNTKTLGLPDTLQEVTVPVVSRETC----RSAYGGTVTDNMICAGA 168

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 62/293 (21%), Positives = 96/293 (32%), Gaps = 73/293 (24%)

Query: 29  GQWPWHVALYRTEGINLSYV-CGGSLVSVNYVITAAHCVTKKPYDKPVDSD-TLVIYLGK 86
           G++P  VAL       +S   CGGS +   YV+TAAHC        P+ SD   V+    
Sbjct: 42  GEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADAS---SPISSDVNRVVV--- 95

Query: 87  YHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDST 146
                 +D    +   V+ ++++  ++  N   DIA+L+L+                 ++
Sbjct: 96  ----DLNDSSQAERGHVRTIYVHEFYSPGNLGNDIAVLELA---------------RAAS 136

Query: 147 APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS-------------ITVARDGLRV 193
            P         S    +S   +    +  + +                  + V    L  
Sbjct: 137 LPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLST 196

Query: 194 CDTKH--------YVVFTDVA------NVCNGDSGGGMVFKIDSAWYLRGIVSITVARDG 239
           C                T         + C GDSGG +  K +     RG+VS      G
Sbjct: 197 CAQYKGCANASDGATGLTGFCAGRPPKDACQGDSGGPIFHKGEEGRVQRGVVSW-----G 251

Query: 240 LRVC-DTKHYVVFTDVKRVHIYPTFNSSNYLGDIA--LLQLSSDVDYSMYVRP 289
              C  T    V+T+V           SNY   IA     LS      +  RP
Sbjct: 252 DGGCGGTLIPGVYTNV-----------SNYQDWIAAMTNGLSYLQFRPLGYRP 293

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
KOG3627|consensus	256		100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	100.0
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.97
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.94
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	99.71
KOG3627|consensus	256		99.63
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	99.56
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	99.42
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	99.42
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.34
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	98.5
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	98.4
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.76
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.67
PRK10139	455	serine endoprotease; Provisional	97.46
PRK10898	353	serine endoprotease; Provisional	97.46
PRK10942	473	serine endoprotease; Provisional	97.3
COG5640	413	Secreted trypsin-like serine protease [Posttransla	97.0
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	95.4
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	95.27
PF00548	172	Peptidase_C3: 3C cysteine protease (picornain 3C);	94.11
PF00863	235	Peptidase_C4: Peptidase family C4 This family belo	91.29
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	87.08

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=2.3e-35  Score=256.78  Aligned_cols=211  Identities=33%  Similarity=0.460  Sum_probs=160.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||+++.+++|||+|+|+...   ..++|+||||+++||||||||+...      ....+.|++|........  ...+
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~---~~~~C~GtlIs~~~VLTaAhC~~~~------~~~~~~v~~g~~~~~~~~--~~~~   69 (232)
T cd00190           1 IVGGSEAKIGSFPWQVSLQYTG---GRHFCGGSLISPRWVLTAAHCVYSS------APSNYTVRLGSHDLSSNE--GGGQ   69 (232)
T ss_pred             CcCCeECCCCCCCCEEEEEccC---CcEEEEEEEeeCCEEEECHHhcCCC------CCccEEEEeCcccccCCC--CceE
Confidence            6899999999999999998763   2789999999999999999999753      246789999998775432  3567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+.....+|||||+|++|+.+++.++|||||.... ..    ..+ ..+. ..||+......  ....
T Consensus        70 ~~~v~~~~~hp~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~-~~----~~~-~~~~-~~G~g~~~~~~--~~~~  140 (232)
T cd00190          70 VIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGY-NL----PAG-TTCT-VSGWGRTSEGG--PLPD  140 (232)
T ss_pred             EEEEEEEEECCCCCCCCCcCCEEEEEECCcccCCCcccceECCCccc-cC----CCC-CEEE-EEeCCcCCCCC--CCCc
Confidence            88999999999999988899999999999999999999999998742 10    111 2232 46666543210  1123


Q ss_pred             eeeEEEEeecCeeeccccc----------eEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCC-C
Q psy15989        180 GIVSITVARDGLRVCDTKH----------YVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT-K  246 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~----------~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~-~  246 (363)
                      .++...+.+.+...|...+          .|....  ....|.|||||||++..+++++|+||+|++.     . |.. .
T Consensus       141 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~lvGI~s~g~-----~-c~~~~  214 (232)
T cd00190         141 VLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGS-----G-CARPN  214 (232)
T ss_pred             eeeEEEeeeECHHHhhhhccCcccCCCceEeeCCCCCCCccccCCCCCcEEEEeCCEEEEEEEEehhh-----c-cCCCC
Confidence            4556666777777786332          233333  5679999999999999889999999999952     2 765 5


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .+.+|++|..
T Consensus       215 ~~~~~t~v~~  224 (232)
T cd00190         215 YPGVYTRVSS  224 (232)
T ss_pred             CCCEEEEcHH
Confidence            6778888654

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=100.00  E-value=1e-33  Score=250.44  Aligned_cols=223  Identities=28%  Similarity=0.422  Sum_probs=167.4

Q ss_pred             ccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCC
Q psy15989         16 AQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDE   95 (363)
Q Consensus        16 ~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~   95 (363)
                      ...||+||.++.+++|||+|+|+....  ..|+|||+||+++||||||||+....     .. .+.|++|.+........
T Consensus         9 ~~~~i~~g~~~~~~~~Pw~~~l~~~~~--~~~~Cggsli~~~~vltaaHC~~~~~-----~~-~~~V~~G~~~~~~~~~~   80 (256)
T KOG3627|consen    9 PEGRIVGGTEAEPGSFPWQVSLQYGGN--GRHLCGGSLISPRWVLTAAHCVKGAS-----AS-LYTVRLGEHDINLSVSE   80 (256)
T ss_pred             ccCCEeCCccCCCCCCCCEEEEEECCC--cceeeeeEEeeCCEEEEChhhCCCCC-----Cc-ceEEEECcccccccccc
Confidence            357899999999999999999987642  26799999999999999999997632     11 78899998866544211


Q ss_pred             CC-ceeeeeeEEEECCCCCCCCCC-CCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEec
Q psy15989         96 GG-VQNKQVKRVHIYPTFNSSNYL-GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKID  173 (363)
Q Consensus        96 ~~-~~~~~V~~i~~hp~y~~~~~~-nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~  173 (363)
                      .. .....|.++++||+|+..+.. ||||||+|++++.|++.|+|||||......    ...+...|. .+|||..... 
T Consensus        81 ~~~~~~~~v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~----~~~~~~~~~-v~GWG~~~~~-  154 (256)
T KOG3627|consen   81 GEEQLVGDVEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPY----FPPGGTTCL-VSGWGRTESG-  154 (256)
T ss_pred             CchhhhceeeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCcccC----CCCCCCEEE-EEeCCCcCCC-
Confidence            21 245568899999999998877 999999999999999999999998554310    122435666 6889876433 


Q ss_pred             CeeEEeeeeEEEEeecCeeeccccc----------eEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcce
Q psy15989        174 SAWYLRGIVSITVARDGLRVCDTKH----------YVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLR  241 (363)
Q Consensus       174 ~~~~~~~l~~~~~~~~~~~~C~~~~----------~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~  241 (363)
                      .......|+...+++.+...|...+          .|...  ...+.|.|||||||++....+++++||+|++     ..
T Consensus       155 ~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~~~~~~GivS~G-----~~  229 (256)
T KOG3627|consen  155 GGPLPDTLQEVDVPIISNSECRRAYGGLGTITDTMLCAGGPEGGKDACQGDSGGPLVCEDNGRWVLVGIVSWG-----SG  229 (256)
T ss_pred             CCCCCceeEEEEEeEcChhHhcccccCccccCCCEEeeCccCCCCccccCCCCCeEEEeeCCcEEEEEEEEec-----CC
Confidence            1112345667788888888897433          34442  3466899999999999987789999999994     33


Q ss_pred             ecCCC-cceEEEeeeEE
Q psy15989        242 VCDTK-HYVVFTDVKRV  257 (363)
Q Consensus       242 ~c~~~-~~~v~~~V~~i  257 (363)
                      .|... .|.+|++|..+
T Consensus       230 ~C~~~~~P~vyt~V~~y  246 (256)
T KOG3627|consen  230 GCGQPNYPGVYTRVSSY  246 (256)
T ss_pred             CCCCCCCCeEEeEhHHh
Confidence            26654 78899987653

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=100.00  E-value=7.4e-33  Score=240.77  Aligned_cols=212  Identities=32%  Similarity=0.452  Sum_probs=155.6

Q ss_pred             eeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCc
Q psy15989         19 LVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV   98 (363)
Q Consensus        19 rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~   98 (363)
                      ||+||+++.+++|||+|.++...   ..+.|+||||+++||||||||+....      ...+.|++|.+.....   ...
T Consensus         1 ~~~~G~~~~~~~~Pw~~~i~~~~---~~~~C~GtlIs~~~VLTaahC~~~~~------~~~~~v~~g~~~~~~~---~~~   68 (229)
T smart00020        1 RIVGGSEANIGSFPWQVSLQYRG---GRHFCGGSLISPRWVLTAAHCVYGSD------PSNIRVRLGSHDLSSG---EEG   68 (229)
T ss_pred             CccCCCcCCCCCCCcEEEEEEcC---CCcEEEEEEecCCEEEECHHHcCCCC------CcceEEEeCcccCCCC---CCc
Confidence            68999999999999999998654   37889999999999999999997531      3579999998876543   222


Q ss_pred             eeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEE
Q psy15989         99 QNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL  178 (363)
Q Consensus        99 ~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~  178 (363)
                      +.+.|.++++||+|+.....+|||||+|++|+.+++.++|||||......     ..+ ..+. ..||+.... ......
T Consensus        69 ~~~~v~~~~~~p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~-----~~~-~~~~-~~g~g~~~~-~~~~~~  140 (229)
T smart00020       69 QVIKVSKVIIHPNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNV-----PAG-TTCT-VSGWGRTSE-GAGSLP  140 (229)
T ss_pred             eEEeeEEEEECCCCCCCCCcCCEEEEEECcccCCCCceeeccCCCccccc-----CCC-CEEE-EEeCCCCCC-CCCcCC
Confidence            78899999999999988889999999999999999999999998862211     111 1222 355554321 111112


Q ss_pred             eeeeEEEEeecCeeeccccc----------eEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-C
Q psy15989        179 RGIVSITVARDGLRVCDTKH----------YVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-T  245 (363)
Q Consensus       179 ~~l~~~~~~~~~~~~C~~~~----------~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~  245 (363)
                      ..+....+.+.+...|...+          .|....  ....|.||+||||+...+ +|+|+||++++     . .|. .
T Consensus       141 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~-~~~l~Gi~s~g-----~-~C~~~  213 (229)
T smart00020      141 DTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVCNDG-RWVLVGIVSWG-----S-GCARP  213 (229)
T ss_pred             CEeeEEEEEEeCHHHhhhhhccccccCCCcEeecCCCCCCcccCCCCCCeeEEECC-CEEEEEEEEEC-----C-CCCCC
Confidence            23445555666666676322          122222  467899999999999877 99999999994     3 566 4


Q ss_pred             CcceEEEeeeEE
Q psy15989        246 KHYVVFTDVKRV  257 (363)
Q Consensus       246 ~~~~v~~~V~~i  257 (363)
                      ..+.++++|..+
T Consensus       214 ~~~~~~~~i~~~  225 (229)
T smart00020      214 GKPGVYTRVSSY  225 (229)
T ss_pred             CCCCEEEEeccc
Confidence            567888887753

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.97  E-value=7.9e-31  Score=226.39  Aligned_cols=205  Identities=29%  Similarity=0.561  Sum_probs=151.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.++.+++|||+|.|+....   .++|+|+||+++||||||||+..        ...+.+++|........  ...+
T Consensus         1 i~~g~~~~~~~~p~~v~i~~~~~---~~~C~G~li~~~~vLTaahC~~~--------~~~~~v~~g~~~~~~~~--~~~~   67 (220)
T PF00089_consen    1 IVGGDPASPGEFPWVVSIRYSNG---RFFCTGTLISPRWVLTAAHCVDG--------ASDIKVRLGTYSIRNSD--GSEQ   67 (220)
T ss_dssp             SBSSEECGTTSSTTEEEEEETTT---EEEEEEEEEETTEEEEEGGGHTS--------GGSEEEEESESBTTSTT--TTSE
T ss_pred             CCCCEECCCCCCCeEEEEeeCCC---CeeEeEEeccccccccccccccc--------ccccccccccccccccc--cccc
Confidence            78999999999999999988653   88999999999999999999974        35788999985444332  4458


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|++++.||+|+.....+|||||+|++++.+.+.++|+||+.... .     ......|. ..||+.....+   ...
T Consensus        68 ~~~v~~~~~h~~~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~-~-----~~~~~~~~-~~G~~~~~~~~---~~~  137 (220)
T PF00089_consen   68 TIKVSKIIIHPKYDPSTYDNDIALLKLDRPITFGDNIQPICLPSAGS-D-----PNVGTSCI-VVGWGRTSDNG---YSS  137 (220)
T ss_dssp             EEEEEEEEEETTSBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTH-T-----TTTTSEEE-EEESSBSSTTS---BTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-c-----cccccccc-ccccccccccc---ccc
Confidence            89999999999999988899999999999999999999999998332 0     01112333 45666532211   112


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEec-CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCC-cce
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVFT-DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK-HYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~~-~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~-~~~  249 (363)
                      .+....+.+.+...|...        ..+... .....|.|||||||++...   +|+||++..      ..|... .+.
T Consensus       138 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~g~sG~pl~~~~~---~lvGI~s~~------~~c~~~~~~~  208 (220)
T PF00089_consen  138 NLQSVTVPVVSRKTCRSSYNDNLTPNMICAGSSGSGDACQGDSGGPLICNNN---YLVGIVSFG------ENCGSPNYPG  208 (220)
T ss_dssp             BEEEEEEEEEEHHHHHHHTTTTSTTTEEEEETTSSSBGGTTTTTSEEEETTE---EEEEEEEEE------SSSSBTTSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccee---eecceeeec------CCCCCCCcCE
Confidence            234445555556667642        233333 3468999999999998764   799999984      346554 468


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      ++++|..
T Consensus       209 v~~~v~~  215 (220)
T PF00089_consen  209 VYTRVSS  215 (220)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            8888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.1e-26  Score=197.75  Aligned_cols=224  Identities=24%  Similarity=0.302  Sum_probs=145.2

Q ss_pred             CccceeecCeecCCCCCcceEEEEEeeCC-ceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccC
Q psy15989         15 KAQPLVTYGQKTARGQWPWHVALYRTEGI-NLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFS   93 (363)
Q Consensus        15 ~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~-~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~   93 (363)
                      ..+.||+||..|+.++||++|+|..+... ....||||+++..|||||||||+....   +...+..+|..+..+.    
T Consensus        28 evs~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s---~is~d~~~vv~~l~d~----  100 (413)
T COG5640          28 EVSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASS---PISSDVNRVVVDLNDS----  100 (413)
T ss_pred             ccceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCC---CccccceEEEeccccc----
Confidence            36789999999999999999999654322 235689999999999999999997642   2344445555554433    


Q ss_pred             CCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEec
Q psy15989         94 DEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKID  173 (363)
Q Consensus        94 ~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~  173 (363)
                        ...+...|++++.|..|.+.++.||||+++|.++.....  ..|..-.....-+..  . ....=.++.+++......
T Consensus       101 --Sq~~rg~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~pr--~ki~~~~~sdt~l~s--v-~~~s~~~n~t~~~~~~~~  173 (413)
T COG5640         101 --SQAERGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPR--VKITSFDASDTFLNS--V-TTVSPMTNGTFGVTTPSD  173 (413)
T ss_pred             --ccccCcceEEEeeecccccccccCcceeeccccccccch--hheeeccCcccceec--c-cccccccceeeeeeeecC
Confidence              455788899999999999999999999999999765321  112221111100000  0 000111133333332211


Q ss_pred             C-eeEE--eeeeEEEEeecCeeeccccc--------------eEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEe
Q psy15989        174 S-AWYL--RGIVSITVARDGLRVCDTKH--------------YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVA  236 (363)
Q Consensus       174 ~-~~~~--~~l~~~~~~~~~~~~C~~~~--------------~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~  236 (363)
                      . ....  ..+.+..+...+...|...+              +++.+..++.|+||||||++.+..+.+.++||+||+  
T Consensus       174 v~~~~p~gt~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~~~daCqGDSGGPi~~~g~~G~vQ~GVvSwG--  251 (413)
T COG5640         174 VPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRPPKDACQGDSGGPIFHKGEEGRVQRGVVSWG--  251 (413)
T ss_pred             CCCCCCccceeeeeeeeeechHHhhhhccccccCCCCCCccceecCCCCcccccCCCCCceEEeCCCccEEEeEEEec--
Confidence            1 1111  13445555556666665332              233444578999999999999998888999999994  


Q ss_pred             cCcceecC-CCcceEEEeeeEE
Q psy15989        237 RDGLRVCD-TKHYVVFTDVKRV  257 (363)
Q Consensus       237 ~~g~~~c~-~~~~~v~~~V~~i  257 (363)
                         ...|. ...+++||+|+.+
T Consensus       252 ---~~~Cg~t~~~gVyT~vsny  270 (413)
T COG5640         252 ---DGGCGGTLIPGVYTNVSNY  270 (413)
T ss_pred             ---CCCCCCCCcceeEEehhHH
Confidence               33354 4567888887655

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=99.71  E-value=2.5e-16  Score=141.07  Aligned_cols=205  Identities=26%  Similarity=0.397  Sum_probs=122.7

Q ss_pred             CCCCCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCC----ccc---
Q psy15989          4 RDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDK----PVD---   76 (363)
Q Consensus         4 ~~~~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~----~~~---   76 (363)
                      |...||... ....+++.+|..+...+.||.|.++.........+++|||||+||||||+||+.......    ..+   
T Consensus        27 rl~~CG~~~-~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~~W~~~~~~~~~~  105 (282)
T PF03761_consen   27 RLETCGKKK-LPYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKSKWLNGEEFDNKK  105 (282)
T ss_pred             HHHhcCCCC-CCCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEecccccccCcccccce
Confidence            345799652 334456899999999999999999887655456778999999999999999998543211    100   


Q ss_pred             --CC--cEEEE---eceecc---cccCCCCCceeeeeeEEEECCCC----CCCCCCCCeEEEEeCCcccCCCCccceEec
Q psy15989         77 --SD--TLVIY---LGKYHQ---HQFSDEGGVQNKQVKRVHIYPTF----NSSNYLGDIALLQLSSDVDYSMYVRPVCLW  142 (363)
Q Consensus        77 --~~--~~~V~---~G~~~~---~~~~~~~~~~~~~V~~i~~hp~y----~~~~~~nDIALl~L~~~~~~~~~v~picL~  142 (363)
                        ..  .+.|-   +-....   .... ........|.++++--.-    +......+++||+|+++  ++....|+|||
T Consensus       106 C~~~~~~l~vP~~~l~~~~v~~~~~~~-~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~  182 (282)
T PF03761_consen  106 CEGNNNHLIVPEEVLSKIDVRCCNCFS-NGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLA  182 (282)
T ss_pred             eeCCCceEEeCHHHhccEEEEeecccc-cCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeC
Confidence              00  11110   000000   0000 122234567777663222    33445689999999999  78899999998


Q ss_pred             CCCCCCceeeeeecee-eecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccceEEecCCCccCcccccceeEEEE
Q psy15989        143 DDSTAPLQLSAVEGTS-VCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKI  221 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~-~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~  221 (363)
                      ..... +    ..+.. ...|.       .....     +....+.+.   .|.. ...........|.||+||||+...
T Consensus       183 ~~~~~-~----~~~~~~~~yg~-------~~~~~-----~~~~~~~i~---~~~~-~~~~~~~~~~~~~~d~Gg~lv~~~  241 (282)
T PF03761_consen  183 DSSTN-W----EKGDEVDVYGF-------NSTGK-----LKHRKLKIT---NCTK-CAYSICTKQYSCKGDRGGPLVKNI  241 (282)
T ss_pred             CCccc-c----ccCceEEEeec-------CCCCe-----EEEEEEEEE---Eeec-cceeEecccccCCCCccCeEEEEE
Confidence            77651 1    11110 01111       00111     111122111   2321 112233456789999999999999


Q ss_pred             cCccEEEEEEEE
Q psy15989        222 DSAWYLRGIVSI  233 (363)
Q Consensus       222 ~~~~~l~Gi~s~  233 (363)
                      +++|+++|+.+-
T Consensus       242 ~gr~tlIGv~~~  253 (282)
T PF03761_consen  242 NGRWTLIGVGAS  253 (282)
T ss_pred             CCCEEEEEEEcc
Confidence            999999999775

>KOG3627|consensus

Probab=99.63  E-value=1.1e-15  Score=135.05  Aligned_cols=105  Identities=30%  Similarity=0.529  Sum_probs=84.2

Q ss_pred             EeeeEEEEcCCCCCCCCC-CceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Cccccce
Q psy15989        252 TDVKRVHIYPTFNSSNYL-GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSEELK  328 (363)
Q Consensus       252 ~~V~~ii~h~~y~~~~~~-nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~~L~  328 (363)
                      ..|.+++.||+|+..... ||||||+|++++.|+++|+|||||.....   .....+..|.++|||.++..  ..+..||
T Consensus        87 ~~v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~---~~~~~~~~~~v~GWG~~~~~~~~~~~~L~  163 (256)
T KOG3627|consen   87 GDVEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADP---YFPPGGTTCLVSGWGRTESGGGPLPDTLQ  163 (256)
T ss_pred             ceeeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCccc---CCCCCCCEEEEEeCCCcCCCCCCCCceeE
Confidence            346678899999998877 99999999999999999999999854321   00234588999999998755  6789999


Q ss_pred             EEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        329 MAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +++++++++++|+..+..  ...++++|||||.
T Consensus       164 ~~~v~i~~~~~C~~~~~~--~~~~~~~~~Ca~~  194 (256)
T KOG3627|consen  164 EVDVPIISNSECRRAYGG--LGTITDTMLCAGG  194 (256)
T ss_pred             EEEEeEcChhHhcccccC--ccccCCCEEeeCc
Confidence            999999999999876431  1146778999986

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=99.56  E-value=1.9e-14  Score=124.91  Aligned_cols=108  Identities=33%  Similarity=0.499  Sum_probs=88.9

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-Ccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-RVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-~~~~~  326 (363)
                      ......|.++++||+|+.....+|||||||++++.++++++|||||.....     ...+..+.++|||.+... ..+..
T Consensus        67 ~~~~~~v~~~~~hp~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~-----~~~~~~~~~~G~g~~~~~~~~~~~  141 (232)
T cd00190          67 GGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYN-----LPAGTTCTVSGWGRTSEGGPLPDV  141 (232)
T ss_pred             ceEEEEEEEEEECCCCCCCCCcCCEEEEEECCcccCCCcccceECCCcccc-----CCCCCEEEEEeCCcCCCCCCCCce
Confidence            355678999999999999888999999999999999999999999976421     355788999999987533 46778


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |+++.+.+++.++|+..+..  ...+.+++|||+..
T Consensus       142 ~~~~~~~~~~~~~C~~~~~~--~~~~~~~~~C~~~~  175 (232)
T cd00190         142 LQEVNVPIVSNAECKRAYSY--GGTITDNMLCAGGL  175 (232)
T ss_pred             eeEEEeeeECHHHhhhhccC--cccCCCceEeeCCC
Confidence            99999999999999865321  13578899999754

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=99.42  E-value=9.6e-13  Score=114.11  Aligned_cols=106  Identities=35%  Similarity=0.542  Sum_probs=86.2

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--CCccccc
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--DRVSEEL  327 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--~~~~~~L  327 (363)
                      ....|.+++.||+|+.....+|||||+|++|+.+++.++|||||.....     ...+..+.++|||....  +..+..|
T Consensus        69 ~~~~v~~~~~~p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~-----~~~~~~~~~~g~g~~~~~~~~~~~~~  143 (229)
T smart00020       69 QVIKVSKVIIHPNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYN-----VPAGTTCTVSGWGRTSEGAGSLPDTL  143 (229)
T ss_pred             eEEeeEEEEECCCCCCCCCcCCEEEEEECcccCCCCceeeccCCCcccc-----cCCCCEEEEEeCCCCCCCCCcCCCEe
Confidence            5568999999999998888999999999999999999999999976322     24578899999998753  3456789


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      +.+.+.+++.+.|...+..  ...+.++++||+..
T Consensus       144 ~~~~~~~~~~~~C~~~~~~--~~~~~~~~~C~~~~  176 (229)
T smart00020      144 QEVNVPIVSNATCRRAYSG--GGAITDNMLCAGGL  176 (229)
T ss_pred             eEEEEEEeCHHHhhhhhcc--ccccCCCcEeecCC
Confidence            9999999999999865321  12478889999754

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.42  E-value=1e-12  Score=108.84  Aligned_cols=102  Identities=22%  Similarity=0.432  Sum_probs=80.5

Q ss_pred             CCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEE
Q psy15989         28 RGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVH  107 (363)
Q Consensus        28 ~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~  107 (363)
                      .-.|||.|.|+..+    .+.|.|+||.+.|||++-.|+.+-.    +...-+.|.+|.......-+.+.+|.+.|..+.
T Consensus        13 ~y~WPWlA~IYvdG----~~~CsgvLlD~~WlLvsssCl~~I~----L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~   84 (267)
T PF09342_consen   13 DYHWPWLADIYVDG----RYWCSGVLLDPHWLLVSSSCLRGIS----LSHHYVSALLGGGKTYLSVDGPHEQISRVDCFK   84 (267)
T ss_pred             cccCcceeeEEEcC----eEEEEEEEeccceEEEeccccCCcc----cccceEEEEecCcceecccCCChheEEEeeeee
Confidence            35699999999876    8999999999999999999997532    233557888888763332234666777787665


Q ss_pred             ECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCC
Q psy15989        108 IYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDD  144 (363)
Q Consensus       108 ~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~  144 (363)
                      .-|       ..+++||+|++|+.|+.+|+|..||..
T Consensus        85 ~V~-------~S~v~LLHL~~~~~fTr~VlP~flp~~  114 (267)
T PF09342_consen   85 DVP-------ESNVLLLHLEQPANFTRYVLPTFLPET  114 (267)
T ss_pred             ecc-------ccceeeeeecCcccceeeecccccccc
Confidence            543       358999999999999999999999873

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.34  E-value=5.8e-12  Score=108.34  Aligned_cols=104  Identities=28%  Similarity=0.558  Sum_probs=85.9

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccce
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELK  328 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~  328 (363)
                      ....+|.+++.||+|+.....+|||||+|++++.+.+.++|+||+.....     ...+..+.+.|||.......+..++
T Consensus        66 ~~~~~v~~~~~h~~~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~G~~~~~~~~~~~~~~  140 (220)
T PF00089_consen   66 EQTIKVSKIIIHPKYDPSTYDNDIALLKLDRPITFGDNIQPICLPSAGSD-----PNVGTSCIVVGWGRTSDNGYSSNLQ  140 (220)
T ss_dssp             SEEEEEEEEEEETTSBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTHT-----TTTTSEEEEEESSBSSTTSBTSBEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccc
Confidence            35678999999999999888999999999999999999999999873321     2457899999999875433567899


Q ss_pred             EEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        329 MAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +..+.+++.+.|+..    +...+.+.++|++.
T Consensus       141 ~~~~~~~~~~~c~~~----~~~~~~~~~~c~~~  169 (220)
T PF00089_consen  141 SVTVPVVSRKTCRSS----YNDNLTPNMICAGS  169 (220)
T ss_dssp             EEEEEEEEHHHHHHH----TTTTSTTTEEEEET
T ss_pred             ccccccccccccccc----cccccccccccccc
Confidence            999999999999754    23347788999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=98.50  E-value=7.3e-07  Score=76.28  Aligned_cols=173  Identities=18%  Similarity=0.203  Sum_probs=88.1

Q ss_pred             CCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEe-ceecccccCCCCCceeeeeeE
Q psy15989         27 ARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYL-GKYHQHQFSDEGGVQNKQVKR  105 (363)
Q Consensus        27 ~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~-G~~~~~~~~~~~~~~~~~V~~  105 (363)
                      ....|||-+-.+..... ..+-|+++||+++-||||+||+.....+.    ..+.+.. |...       .+.....+..
T Consensus        45 dt~~~Py~av~~~~~~t-G~~~~~~~lI~pntvLTa~Hc~~s~~~G~----~~~~~~p~g~~~-------~~~~~~~~~~  112 (251)
T COG3591          45 DTTQFPYSAVVQFEAAT-GRLCTAATLIGPNTVLTAGHCIYSPDYGE----DDIAAAPPGVNS-------DGGPFYGITK  112 (251)
T ss_pred             cCCCCCcceeEEeecCC-CcceeeEEEEcCceEEEeeeEEecCCCCh----hhhhhcCCcccC-------CCCCCCceee
Confidence            45789999888665443 25567789999999999999998754221    2222322 3221       2222222333


Q ss_pred             --EEECCC--CCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEE-ecCeeEEee
Q psy15989        106 --VHIYPT--FNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFK-IDSAWYLRG  180 (363)
Q Consensus       106 --i~~hp~--y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~-~~~~~~~~~  180 (363)
                        +...|.  |+.+....|+..+.|+...++.+.+....++......     ...  . ....|.|.... ...+|...+
T Consensus       113 ~~~~~~~g~~~~~d~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~d--~-i~v~GYP~dk~~~~~~~e~t~  184 (251)
T COG3591         113 IEIRVYPGELYKEDGASYDVGEAALESGINIGDVVNYLKRNTASEAK-----AND--R-ITVIGYPGDKPNIGTMWESTG  184 (251)
T ss_pred             EEEEecCCceeccCCceeeccHHHhccCCCccccccccccccccccc-----cCc--e-eEEEeccCCCCcceeEeeecc
Confidence              322443  3444555666666666444444444433332222100     011  1 11344443222 111111111


Q ss_pred             eeEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        181 IVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       181 l~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      -+.+-            ....+....+.+.|+||+|++...+   +++|+..-+
T Consensus       185 ~v~~~------------~~~~l~y~~dT~pG~SGSpv~~~~~---~vigv~~~g  223 (251)
T COG3591         185 KVNSI------------KGNKLFYDADTLPGSSGSPVLISKD---EVIGVHYNG  223 (251)
T ss_pred             eeEEE------------ecceEEEEecccCCCCCCceEecCc---eEEEEEecC
Confidence            11000            0012334467889999999997765   889887763

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=98.40  E-value=1.2e-05  Score=61.77  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             EEEEEeeCC-EEEeeccCcccCC
Q psy15989         49 CGGSLVSVN-YVITAAHCVTKKP   70 (363)
Q Consensus        49 CgGsLIs~~-~VLTAAhC~~~~~   70 (363)
                      |+|.+|.++ +|||||||+....
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~~~~   23 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVEDWN   23 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHTCCT
T ss_pred             CEEEEEcCCceEEEchhheeccc
Confidence            689999999 9999999998643

...

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.76  E-value=0.00055  Score=65.08  Aligned_cols=70  Identities=24%  Similarity=0.363  Sum_probs=46.6

Q ss_pred             eEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEE
Q psy15989         46 SYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALL  124 (363)
Q Consensus        46 ~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl  124 (363)
                      ...++|.+|++. +|||++|.+.+        ...+.|.+..           ...+..+-+..++       ..|||||
T Consensus        57 ~~~GSGfii~~~G~IlTn~Hvv~~--------~~~i~V~~~~-----------~~~~~a~vv~~d~-------~~DlAll  110 (428)
T TIGR02037        57 RGLGSGVIISADGYILTNNHVVDG--------ADEITVTLSD-----------GREFKAKLVGKDP-------RTDIAVL  110 (428)
T ss_pred             cceeeEEEECCCCEEEEcHHHcCC--------CCeEEEEeCC-----------CCEEEEEEEEecC-------CCCEEEE
Confidence            467999999986 99999999964        3566666532           1234444333443       3599999


Q ss_pred             EeCCcccCCCCccceEecCCC
Q psy15989        125 QLSSDVDYSMYVRPVCLWDDS  145 (363)
Q Consensus       125 ~L~~~~~~~~~v~picL~~~~  145 (363)
                      +++.+    ..+.++.|....
T Consensus       111 kv~~~----~~~~~~~l~~~~  127 (428)
T TIGR02037       111 KIDAK----KNLPVIKLGDSD  127 (428)
T ss_pred             EecCC----CCceEEEccCCC
Confidence            99865    245577775443

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.67  E-value=0.0022  Score=59.24  Aligned_cols=74  Identities=26%  Similarity=0.405  Sum_probs=47.7

Q ss_pred             CCcceEEEEEeeCC-------ceeEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceee
Q psy15989         30 QWPWHVALYRTEGI-------NLSYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNK  101 (363)
Q Consensus        30 ~~Pw~v~l~~~~~~-------~~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~  101 (363)
                      .-|-+|.|+.....       ......+|.+|+++ +|||++|.+..        .+.+.|.+.+           +..+
T Consensus        54 ~~psVV~I~~~~~~~~~~~~~~~~~~GSG~vi~~~G~IlTn~HVV~~--------~~~i~V~~~d-----------g~~~  114 (351)
T TIGR02038        54 AAPAVVNIYNRSISQNSLNQLSIQGLGSGVIMSKEGYILTNYHVIKK--------ADQIVVALQD-----------GRKF  114 (351)
T ss_pred             cCCcEEEEEeEeccccccccccccceEEEEEEeCCeEEEecccEeCC--------CCEEEEEECC-----------CCEE
Confidence            34888998754311       11346899999977 99999999964        3456665422           1234


Q ss_pred             eeeEEEECCCCCCCCCCCCeEEEEeCCc
Q psy15989        102 QVKRVHIYPTFNSSNYLGDIALLQLSSD  129 (363)
Q Consensus       102 ~V~~i~~hp~y~~~~~~nDIALl~L~~~  129 (363)
                      ..+-+..+|       ..||||||++.+
T Consensus       115 ~a~vv~~d~-------~~DlAvlkv~~~  135 (351)
T TIGR02038       115 EAELVGSDP-------LTDLAVLKIEGD  135 (351)
T ss_pred             EEEEEEecC-------CCCEEEEEecCC
Confidence            444343443       359999999864

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10139 serine endoprotease; Provisional

Probab=97.46  E-value=0.0027  Score=60.59  Aligned_cols=69  Identities=23%  Similarity=0.395  Sum_probs=45.1

Q ss_pred             EEEEEEEeeC--CEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEE
Q psy15989         47 YVCGGSLVSV--NYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALL  124 (363)
Q Consensus        47 ~~CgGsLIs~--~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl  124 (363)
                      ...+|.+|++  -+|||.+|.+.+        ...+.|.+.+         .  ..+..+-+-..|       ..|||||
T Consensus        90 ~~GSG~ii~~~~g~IlTn~HVv~~--------a~~i~V~~~d---------g--~~~~a~vvg~D~-------~~DlAvl  143 (455)
T PRK10139         90 GLGSGVIIDAAKGYVLTNNHVINQ--------AQKISIQLND---------G--REFDAKLIGSDD-------QSDIALL  143 (455)
T ss_pred             ceEEEEEEECCCCEEEeChHHhCC--------CCEEEEEECC---------C--CEEEEEEEEEcC-------CCCEEEE
Confidence            4689999974  699999999964        4567777532         1  234444343433       3599999


Q ss_pred             EeCCcccCCCCccceEecCCC
Q psy15989        125 QLSSDVDYSMYVRPVCLWDDS  145 (363)
Q Consensus       125 ~L~~~~~~~~~v~picL~~~~  145 (363)
                      |++.+-    ...++.|....
T Consensus       144 kv~~~~----~l~~~~lg~s~  160 (455)
T PRK10139        144 QIQNPS----KLTQIAIADSD  160 (455)
T ss_pred             EecCCC----CCceeEecCcc
Confidence            998642    24466665433

>PRK10898 serine endoprotease; Provisional

Probab=97.46  E-value=0.0055  Score=56.60  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=46.9

Q ss_pred             CcceEEEEEeeCC-------ceeEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeee
Q psy15989         31 WPWHVALYRTEGI-------NLSYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ  102 (363)
Q Consensus        31 ~Pw~v~l~~~~~~-------~~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~  102 (363)
                      -|-+|.|......       .....-+|.+|+++ +|||++|=+.+        ...+.|.+.+           ...+.
T Consensus        55 ~psvV~v~~~~~~~~~~~~~~~~~~GSGfvi~~~G~IlTn~HVv~~--------a~~i~V~~~d-----------g~~~~  115 (353)
T PRK10898         55 APAVVNVYNRSLNSTSHNQLEIRTLGSGVIMDQRGYILTNKHVIND--------ADQIIVALQD-----------GRVFE  115 (353)
T ss_pred             CCcEEEEEeEeccccCcccccccceeeEEEEeCCeEEEecccEeCC--------CCEEEEEeCC-----------CCEEE
Confidence            4888888664311       11256899999976 99999998863        3556666532           12333


Q ss_pred             eeEEEECCCCCCCCCCCCeEEEEeCCc
Q psy15989        103 VKRVHIYPTFNSSNYLGDIALLQLSSD  129 (363)
Q Consensus       103 V~~i~~hp~y~~~~~~nDIALl~L~~~  129 (363)
                      .+-+...|       .+||||||++.+
T Consensus       116 a~vv~~d~-------~~DlAvl~v~~~  135 (353)
T PRK10898        116 ALLVGSDS-------LTDLAVLKINAT  135 (353)
T ss_pred             EEEEEEcC-------CCCEEEEEEcCC
Confidence            43344433       369999999864

>PRK10942 serine endoprotease; Provisional

Probab=97.30  E-value=0.0057  Score=58.73  Aligned_cols=68  Identities=25%  Similarity=0.386  Sum_probs=43.8

Q ss_pred             EEEEEEEeeC--CEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEE
Q psy15989         47 YVCGGSLVSV--NYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALL  124 (363)
Q Consensus        47 ~~CgGsLIs~--~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl  124 (363)
                      ...+|.+|++  -+|||.+|.+.+        ...+.|.+.+           ...+..+-+..+|       ..|||||
T Consensus       111 ~~GSG~ii~~~~G~IlTn~HVv~~--------a~~i~V~~~d-----------g~~~~a~vv~~D~-------~~DlAvl  164 (473)
T PRK10942        111 ALGSGVIIDADKGYVVTNNHVVDN--------ATKIKVQLSD-----------GRKFDAKVVGKDP-------RSDIALI  164 (473)
T ss_pred             ceEEEEEEECCCCEEEeChhhcCC--------CCEEEEEECC-----------CCEEEEEEEEecC-------CCCEEEE
Confidence            4689999985  599999999864        4567777532           1233444333443       3599999


Q ss_pred             EeCCcccCCCCccceEecCC
Q psy15989        125 QLSSDVDYSMYVRPVCLWDD  144 (363)
Q Consensus       125 ~L~~~~~~~~~v~picL~~~  144 (363)
                      |++.+-.    ..++.|...
T Consensus       165 ki~~~~~----l~~~~lg~s  180 (473)
T PRK10942        165 QLQNPKN----LTAIKMADS  180 (473)
T ss_pred             EecCCCC----CceeEecCc
Confidence            9975322    345666443

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0019  Score=57.60  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC----CCcc-
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN----DRVS-  324 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~----~~~~-  324 (363)
                      ....|..++.|..|.+.++.||||+++|.++...-. + -|-+-+..+. ...++.........+||.+..    ...+ 
T Consensus       104 ~rg~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~pr-~-ki~~~~~sdt-~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~  180 (413)
T COG5640         104 ERGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPR-V-KITSFDASDT-FLNSVTTVSPMTNGTFGVTTPSDVPRSSPK  180 (413)
T ss_pred             cCcceEEEeeecccccccccCcceeeccccccccch-h-heeeccCccc-ceecccccccccceeeeeeeecCCCCCCCc
Confidence            345688899999999999999999999998655321 0 1111111110 011233345566778886521    1223 


Q ss_pred             -ccceEEEeceeecccccccCc-ccc-ccCCCCCeEEeccC
Q psy15989        325 -EELKMAIMPIVSHQQCLWSNP-QFF-SQFTSDETFCAGFR  362 (363)
Q Consensus       325 -~~L~~~~v~ii~~~~C~~~~~-~~~-~~~i~~~~iCag~~  362 (363)
                       ..|+++.|..++.++|++.+. ... .....-.-+|||.+
T Consensus       181 gt~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~  221 (413)
T COG5640         181 GTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRP  221 (413)
T ss_pred             cceeeeeeeeeechHHhhhhccccccCCCCCCccceecCCC
Confidence             489999999999999976542 111 11111123999864

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.40  E-value=0.032  Score=47.35  Aligned_cols=59  Identities=19%  Similarity=0.279  Sum_probs=42.1

Q ss_pred             CcceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        246 KHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       246 ~~~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      +...|..+|..+..-|       ..+++||.|++|+.|+.+|+|..||+....     ......|...|--
T Consensus        72 Gp~EQI~rVD~~~~V~-------~S~v~LLHL~~~~~fTr~VlP~flp~~~~~-----~~~~~~CVAVg~d  130 (267)
T PF09342_consen   72 GPHEQISRVDCFKDVP-------ESNVLLLHLEQPANFTRYVLPTFLPETSNE-----NESDDECVAVGHD  130 (267)
T ss_pred             CChheEEEeeeeeecc-------ccceeeeeecCcccceeeecccccccccCC-----CCCCCceEEEEcc
Confidence            3455666777654322       468999999999999999999999973332     1234589888853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.27  E-value=0.26  Score=49.96  Aligned_cols=65  Identities=20%  Similarity=0.323  Sum_probs=37.3

Q ss_pred             EEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcc
Q psy15989         51 GSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDV  130 (363)
Q Consensus        51 GsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~  130 (363)
                      .|||+|++|+|++|=...+          -.|.+|....         ..+.+.+--.|+.       .|..+.||.+=|
T Consensus        69 aTLigpqYiVSV~HN~~gy----------~~v~FG~~g~---------~~Y~iV~RNn~~~-------~Df~~pRLnK~V  122 (769)
T PF02395_consen   69 ATLIGPQYIVSVKHNGKGY----------NSVSFGNEGQ---------NTYKIVDRNNYPS-------GDFHMPRLNKFV  122 (769)
T ss_dssp             -EEEETTEEEBETTG-TSC----------CEECESCSST---------CEEEEEEEEBETT-------STEBEEEESS--
T ss_pred             EEEecCCeEEEEEccCCCc----------CceeecccCC---------ceEEEEEccCCCC-------cccceeecCceE
Confidence            8999999999999976221          2455555321         3455555545543       499999999866


Q ss_pred             cCCCCccceEecCC
Q psy15989        131 DYSMYVRPVCLWDD  144 (363)
Q Consensus       131 ~~~~~v~picL~~~  144 (363)
                      +   -+.|+-....
T Consensus       123 T---EvaP~~~t~~  133 (769)
T PF02395_consen  123 T---EVAPAEMTTA  133 (769)
T ss_dssp             ----SS----BBSS
T ss_pred             E---EEeccccccc
Confidence            5   3677766544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.11  E-value=2  Score=35.22  Aligned_cols=147  Identities=13%  Similarity=0.068  Sum_probs=70.8

Q ss_pred             eeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEE
Q psy15989         45 LSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALL  124 (363)
Q Consensus        45 ~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl  124 (363)
                      ..+.+.+..|.++|.|--.|.-.         ..  .+.++..            .+++...+..  .+......||+|+
T Consensus        23 g~~t~l~~gi~~~~~lvp~H~~~---------~~--~i~i~g~------------~~~~~d~~~l--v~~~~~~~Dl~~v   77 (172)
T PF00548_consen   23 GEFTMLALGIYDRYFLVPTHEEP---------ED--TIYIDGV------------EYKVDDSVVL--VDRDGVDTDLTLV   77 (172)
T ss_dssp             EEEEEEEEEEEBTEEEEEGGGGG---------CS--EEEETTE------------EEEEEEEEEE--EETTSSEEEEEEE
T ss_pred             ceEEEecceEeeeEEEEECcCCC---------cE--EEEECCE------------EEEeeeeEEE--ecCCCcceeEEEE
Confidence            36777888999999999999211         12  2222221            2222222111  1122234599999


Q ss_pred             EeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEE-eecCeeeccccceEEec
Q psy15989        125 QLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV-ARDGLRVCDTKHYVVFT  203 (363)
Q Consensus       125 ~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~-~~~~~~~C~~~~~~~~~  203 (363)
                      +|++.-+|.|..+-++- ....      +.+...... ....+.......     .+...+. .......     ...+.
T Consensus        78 ~l~~~~kfrDIrk~~~~-~~~~------~~~~~l~v~-~~~~~~~~~~v~-----~v~~~~~i~~~g~~~-----~~~~~  139 (172)
T PF00548_consen   78 KLPRNPKFRDIRKFFPE-SIPE------YPECVLLVN-STKFPRMIVEVG-----FVTNFGFINLSGTTT-----PRSLK  139 (172)
T ss_dssp             EEESSS-B--GGGGSBS-SGGT------EEEEEEEEE-SSSSTCEEEEEE-----EEEEEEEEEETTEEE-----EEEEE
T ss_pred             EccCCcccCchhhhhcc-cccc------CCCcEEEEE-CCCCccEEEEEE-----EEeecCccccCCCEe-----eEEEE
Confidence            99999889887777761 1111      111111112 222221111111     0111111 1001111     11111


Q ss_pred             CCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        204 DVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       204 ~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      -......|+.||||+.+.++...++||+.-+
T Consensus       140 Y~~~t~~G~CG~~l~~~~~~~~~i~GiHvaG  170 (172)
T PF00548_consen  140 YKAPTKPGMCGSPLVSRIGGQGKIIGIHVAG  170 (172)
T ss_dssp             EESEEETTGTTEEEEESCGGTTEEEEEEEEE
T ss_pred             EccCCCCCccCCeEEEeeccCccEEEEEecc
Confidence            1223446999999999887788999998753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A ....

>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification

Probab=91.29  E-value=1.1  Score=38.50  Aligned_cols=25  Identities=36%  Similarity=0.437  Sum_probs=16.6

Q ss_pred             cCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        208 VCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       208 ~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .=.||.|.|++...++  .++||.|.+
T Consensus       148 Tk~G~CG~PlVs~~Dg--~IVGiHsl~  172 (235)
T PF00863_consen  148 TKDGDCGLPLVSTKDG--KIVGIHSLT  172 (235)
T ss_dssp             --TT-TT-EEEETTT----EEEEEEEE
T ss_pred             CCCCccCCcEEEcCCC--cEEEEEcCc
Confidence            3468999999987776  799999985

; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=87.08  E-value=3.3  Score=36.87  Aligned_cols=42  Identities=36%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEe
Q psy15989        267 NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGW  315 (363)
Q Consensus       267 ~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GW  315 (363)
                      ....+.+||+|+++  ++..+.|+|||++...     ...+....+-|+
T Consensus       158 ~~~~~~mIlEl~~~--~~~~~~~~Cl~~~~~~-----~~~~~~~~~yg~  199 (282)
T PF03761_consen  158 NRPYSPMILELEED--FSKNVSPPCLADSSTN-----WEKGDEVDVYGF  199 (282)
T ss_pred             ccccceEEEEEccc--ccccCCCEEeCCCccc-----cccCceEEEeec
Confidence            44678999999999  8889999999976542     233444445554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	363
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		4e-21
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		1e-07
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		2e-20
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		4e-07
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		2e-20
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		3e-07
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		3e-20
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		4e-07
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		3e-20
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		4e-07
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		3e-20
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		3e-07
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		3e-20
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		4e-07
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		3e-20
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		4e-07
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		3e-20
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		4e-07
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		3e-20
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		4e-07
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		3e-20
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		4e-07
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		3e-20
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		5e-07
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		4e-20
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		4e-07
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		4e-20
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		4e-07
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		4e-20
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		4e-07
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		4e-20
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		4e-07
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		4e-20
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		4e-07
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		4e-20
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		4e-07
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		4e-20
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		4e-07
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		4e-20
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		6e-09
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		5e-20
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		5e-08
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		5e-20
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		5e-08
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		5e-20
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		4e-07
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		5e-20
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		4e-07
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		5e-20
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		4e-07
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		5e-20
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		4e-07
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		5e-20
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		4e-07
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		5e-20
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		3e-07
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		5e-20
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		3e-08
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		6e-20
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		6e-07
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		6e-20
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		5e-09
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		7e-20
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		4e-07
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		7e-20
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		4e-07
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		7e-20
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		7e-09
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		8e-20
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		3e-07
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		9e-20
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		4e-07
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		9e-20
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		4e-08
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		9e-20
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		4e-07
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		1e-19
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		1e-06
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		2e-19
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		4e-07
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		3e-19
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		4e-08
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		3e-19
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		4e-07
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		3e-19
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		9e-08
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		3e-19
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		4e-06
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		5e-19
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		4e-07
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		7e-19
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		3e-07
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		1e-18
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-07
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		1e-18
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		3e-07
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		5e-18
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		3e-06
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		5e-18
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		3e-06
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		6e-18
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		1e-04
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		7e-18
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		1e-04
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		2e-17
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		1e-05
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		4e-17
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		7e-06
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		8e-17
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		1e-16
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		4e-06
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		1e-15
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		1e-15
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		1e-15
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		6e-15
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		7e-06
1aut_C	250	Human Activated Protein C Length = 250		1e-14
1aut_C	250	Human Activated Protein C Length = 250		2e-09
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		1e-14
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		2e-09
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		1e-14
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		1e-14
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		2e-14
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		5e-14
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		1e-13
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		1e-06
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-13
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-13
2jet_B	128	Crystal Structure Of A Trypsin-Like Mutant (S189d,		2e-13
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		2e-13
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		3e-13
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		1e-04
1lto_A	245	Human Alpha1-Tryptase Length = 245		3e-13
1elt_A	236	Structure Of Native Pancreatic Elastase From North		6e-13
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		6e-13
2bok_A	241	Factor Xa- Cation Length = 241		2e-12
2bok_A	241	Factor Xa- Cation Length = 241		2e-05
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		2e-12
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		2e-05
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		2e-12
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		4e-06
1pfx_C	235	Porcine Factor Ixa Length = 235		2e-12
1pfx_C	235	Porcine Factor Ixa Length = 235		1e-04
1kdq_A	131	Crystal Structure Analysis Of The Mutant S189d Rat		2e-12
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		3e-12
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		9e-05
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		4e-12
1mtn_B	131	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		4e-12
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		4e-12
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		3e-06
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		4e-12
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		4e-06
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		5e-12
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		3e-06
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		5e-12
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		3e-06
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		5e-12
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		4e-06
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		5e-12
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		3e-06
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		5e-12
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		4e-06
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		1e-11
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		3e-06
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		1e-11
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		1e-11
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		1e-06
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		1e-11
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		3e-06
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		2e-11
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		3e-07
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		2e-11
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		2e-11
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		3e-07
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		2e-11
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		2e-07
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		3e-11
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		2e-07
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		3e-11
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		2e-06
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		3e-11
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		4e-11
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		5e-11
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		7e-11
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		1e-05
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		8e-11
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		8e-11
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		8e-11
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		1e-10
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		6e-06
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		1e-10
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		1e-10
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		1e-10
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		9e-06
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		1e-10
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		5e-06
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		1e-10
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		1e-05
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		1e-10
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		5e-06
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		1e-10
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		1e-05
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-10
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		5e-06
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		2e-10
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		5e-06
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		2e-10
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		2e-06
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		2e-10
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		3e-06
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		2e-10
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		2e-10
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		2e-10
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		2e-06
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		2e-10
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		4e-06
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		3e-10
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		4e-06
2any_A	241	Expression, Crystallization And The Three-Dimension		3e-10
2any_A	241	Expression, Crystallization And The Three-Dimension		3e-04
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		3e-10
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		3e-10
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		5e-06
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		4e-10
1kig_H	241	Bovine Factor Xa Length = 241		4e-10
1kig_H	241	Bovine Factor Xa Length = 241		1e-04
2anw_A	241	Expression, Crystallization And Three-Dimensional S		5e-10
2anw_A	241	Expression, Crystallization And Three-Dimensional S		4e-04
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		2e-09
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		6e-06
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		2e-09
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		6e-06
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		2e-09
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		3e-05
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		2e-09
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		5e-06
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		3e-09
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		3e-09
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		3e-09
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		3e-09
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		3e-09
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		4e-09
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		4e-09
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		4e-09
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		5e-09
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		5e-09
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		6e-09
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		8e-09
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		9e-09
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		1e-08
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		9e-06
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		1e-08
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		2e-08
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		3e-08
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		3e-08
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		3e-08
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		4e-08
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		4e-08
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		5e-08
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		5e-08
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		5e-08
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		7e-08
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		2e-06
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		8e-08
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		2e-07
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		2e-07
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		4e-06
2hnt_C	70	Crystallographic Structure Of Human Gamma-Thrombin		3e-07
3h7o_A	228	Crystal Structure Of Scabies Mite Inactivated Prote		3e-07
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		4e-07
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		4e-07
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		4e-07
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		4e-07
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		5e-07
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		5e-07
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		7e-07
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		8e-07
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		9e-07
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		1e-06
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		4e-06
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		1e-06
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		6e-04
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		1e-06
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		2e-06
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		2e-06
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		5e-06
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		2e-06
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		7e-06
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		2e-06
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		8e-06
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		2e-06
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		4e-06
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		2e-06
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		4e-06
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		2e-06
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		6e-04
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		2e-06
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		3e-06
2hnt_E	81	Crystallographic Structure Of Human Gamma-Thrombin		2e-06
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		2e-06
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		3e-06
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		2e-06
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		3e-06
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		3e-06
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		4e-06
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		4e-06
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		4e-06
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		6e-06
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		9e-06
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		9e-06
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		9e-06
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		1e-05
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		5e-04
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		1e-05
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		6e-04
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		1e-05
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		6e-04
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		2e-05
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		2e-05
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		2e-05
3fzz_A	227	Structure Of Grc Length = 227		2e-05
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		3e-05
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		3e-05
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		6e-04
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		3e-05
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		4e-05
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		5e-05
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		5e-05
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		5e-05
1dle_A	298	Factor B Serine Protease Domain Length = 298		6e-05
1rrk_A	497	Crystal Structure Analysis Of The Bb Segment Of Fac		7e-05
2win_I	507	C3 Convertase (C3bbb) Stabilized By Scin Length = 5		7e-05
2xwb_F	732	Crystal Structure Of Complement C3b In Complex With		7e-05
2ok5_A	752	Human Complement Factor B Length = 752		7e-05
3hrz_D	741	Cobra Venom Factor (Cvf) In Complex With Human Fact		7e-05
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		8e-05
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		8e-05
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		8e-05
1aks_A	125	Crystal Structure Of The First Active Autolysate Fo		8e-05
1nn6_A	228	Human Pro-Chymase Length = 228		8e-05
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		8e-05
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		8e-05
1fy1_A	225	[r23s,F25e]hbp, A Mutant Of Human Heparin Binding P		9e-05
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		1e-04
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		1e-04
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		1e-04
2xrc_A	565	Human Complement Factor I Length = 565		1e-04
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		1e-04
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		1e-04
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		1e-04
2kai_A	80	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		1e-04
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		1e-04
2a31_A	223	Trypsin In Complex With Borate Length = 223		1e-04
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		1e-04
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		1e-04
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		1e-04
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		1e-04
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		1e-04
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		2e-04
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		2e-04
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		2e-04
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		2e-04
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		2e-04
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		2e-04
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		2e-04
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		2e-04
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		2e-04
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		2e-04
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		2e-04
2i6q_A	517	Complement Component C2a Length = 517		2e-04
2odp_A	509	Complement Component C2a, The Catalytic Fragment Of		2e-04
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		2e-04
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		2e-04
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		2e-04
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		3e-04
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		3e-04
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		3e-04
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		3e-04
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		3e-04
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		3e-04
1dpo_A	223	Structure Of Rat Trypsin Length = 223		3e-04
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		3e-04
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		4e-04
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		4e-04
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		4e-04
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		4e-04
2asu_B	234	Crystal Structure Of The Beta-Chain Of HgflMSP Leng		5e-04
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		5e-04
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		5e-04
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		5e-04
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		6e-04
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		7e-04
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		7e-04
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		9e-04

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 123/263 (46%), Gaps = 36/263 (13%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDG--LRVCDTKHYVVF----TDVANVCNGDSGGGMVFK--IDSAWYLRGIVSITVARD 238
            +D   +R+ D      F    T   + C GDSGG  V K   ++ WY  GIVS      
Sbjct: 173 CKDSTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG-- 230
Query: 239 GLRVCDTK-HYVVFTDVKRVHIY 260
               CD K  Y  +T V R+  +
Sbjct: 231 ----CDRKGKYGFYTHVFRLKKW 249

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAGF+
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGFK 191

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 31  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 88
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 89  LLVRIGKHSRTRY--EANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 202
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 203 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 111 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 168
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 169 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 221

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 31/243 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVSITVA-- 236
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS      
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCD 232
Query: 237 RDG 239
           RDG
Sbjct: 233 RDG 235

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--EANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--EANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 31/243 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVSITVA-- 236
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS      
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCD 232
Query: 237 RDG 239
           RDG
Sbjct: 233 RDG 235

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 31  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 88
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 89  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 202
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 203 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 111 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 168
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 169 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 221

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 31  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 88
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 89  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 202
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 203 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 111 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 168
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 169 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 221

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 37  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 94
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 95  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 152
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 153 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 208
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 209 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 262

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 117 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 174
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 175 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 227

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 30  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 87
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 88  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 145
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 146 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 201
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 202 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 255

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 110 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 167
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 168 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 220

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 33  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 90
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 91  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 148
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 149 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 204
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 205 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 258

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 113 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 170
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 171 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 223

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 37  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 94
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 95  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 152
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 153 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 208
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 209 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 262

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 117 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 174
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 175 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 227

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 31  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 88
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 89  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 202
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 203 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 111 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 168
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 169 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 221

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 33  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 90
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 91  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 148
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 149 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 204
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 205 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 258

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 113 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 170
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 171 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 223

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGPLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 34/262 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVSITVARD 238
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS     +
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWG---E 229
Query: 239 GLRVCDTKHYVVFTDVKRVHIY 260
           G R  D   Y  +T V R+  +
Sbjct: 230 GCR--DDGKYGFYTHVFRLKKW 249

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 22/227 (9%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCN----GDSGGGMVFKIDSAWYLRGIVSITVARDGLRV 193
           PVCL D  TA   L A     V       ++G   V ++ +      IV   V +D  R+
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSVLQVVNL----PIVERPVCKDSTRI 172
Query: 194 CDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
             T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 219

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +       L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 184

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 107/228 (46%), Gaps = 26/228 (11%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLR 192
           PVCL D  TA   L A     V G     G      V  +        IV   V +D  R
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKGQPSVLQVVNLP-------IVERPVCKDSTR 169
Query: 193 VCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
           +  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 170 IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 217

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +       L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKGQ--PSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 182

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 23/228 (10%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLR 192
           PVCL D  TA   L A     V G        G   V ++ +      IV   V +D  R
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNL----PIVERPVCKDSTR 172
Query: 193 VCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
           +  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 220

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWG-YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG   E       L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 185

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACQGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 119/258 (46%), Gaps = 32/258 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G    +G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCILYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    +++++++P +N   N   DIALL+L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  T    L A           +  T   N +     V ++ +   +   V    
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS 176
Query: 187 ARDGLRVCDTKHYVVF----TDVANVCNGDSGGGMVFK--IDSAWYLRGIVSITVARDGL 240
            R  +R+ D      F    T   + C GDSGG  V K   ++ WY  GIVS        
Sbjct: 177 TR--IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAG---- 230
Query: 241 RVCDTK-HYVVFTDVKRV 257
             CD K  Y  +T V R+
Sbjct: 231 --CDRKGKYGFYTHVFRL 246

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++++P +N   N   DIALL+L   V +S Y+ PVCL D  T    L A  G  G V
Sbjct: 81  LEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRA--GYKGRV 138
Query: 313 IGWG-------YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG        + N+     L++  +PIV    C  S         +D  FCAGF+
Sbjct: 139 TGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAST----RIRITDNMFCAGFK 191

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 166 IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 223
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 224 LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 281
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 282 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 337
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 338 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 391

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 246 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 303
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 304 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 356

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 22/227 (9%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCN----GDSGGGMVFKIDSAWYLRGIVSITVARDGLRV 193
           PVCL D  TA   L A     V       + G   V ++ +      IV   V +D  R+
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQPSVLQVVNL----PIVERPVCKDSTRI 172
Query: 194 CDTKHYVVFT------DVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
             T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 219

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +       L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKEKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 184

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 50  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 107
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 108 LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 165
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 166 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 221
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GD+GG  V K   ++ WY  GIVS
Sbjct: 222 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVS 275

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 130 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 187
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 188 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 240

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 32  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 89
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 90  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 147
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 148 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 203
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GD+GG  V K   ++ WY  GIVS
Sbjct: 204 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVS 257

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 112 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 169
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 170 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 222

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 22/227 (9%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ +  +  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTAY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCN----GDSGGGMVFKIDSAWYLRGIVSITVARDGLRV 193
           PVCL D  TA   L A     V       ++G   V ++ +      IV   V +D  R+
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSVLQVVNL----PIVERPVCKDSTRI 172
Query: 194 CDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
             T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 219

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +       L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 184

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 2   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 59
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 60  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 117
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 118 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 173
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GD+GG  V K   ++ WY  GIVS
Sbjct: 174 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVS 227

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 82  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 139
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 140 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 192

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFIEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 120/261 (45%), Gaps = 32/261 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G    +G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCILYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    +++++++P +N   N   DIALL+L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  T    L A           +  T   N +     V ++ +   +   V    
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS 176
Query: 187 ARDGLRVCDTKHYVVF----TDVANVCNGDSGGGMVFK--IDSAWYLRGIVSITVARDGL 240
            R  +R+ D      F    T   + C GDSGG  V K   ++ WY  GIVS        
Sbjct: 177 TR--IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG---- 230
Query: 241 RVCDTK-HYVVFTDVKRVHIY 260
             CD K  Y  +T V R+  +
Sbjct: 231 --CDRKGKYGFYTHVFRLKAW 249

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++++P +N   N   DIALL+L   V +S Y+ PVCL D  T    L A  G  G V
Sbjct: 81  LEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRA--GYKGRV 138
Query: 313 IGWG-------YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG        + N+     L++  +PIV    C  S         +D  FCAGF+
Sbjct: 139 TGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAST----RIRITDNMFCAGFK 191

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GD+GG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   +IAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   +IAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C  DSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEADSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 25/232 (10%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G    +G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCILYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    +++++++P +N   N   DIALL+L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  T    L A           +  T   N +     V ++ +   +   V    
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAS 176
Query: 187 ARDGLRVCDTKHYVVF----TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            R  +R+ D      F    T   + C GD+GG  V K   ++ WY  GIVS
Sbjct: 177 TR--IRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSPFNNRWYQMGIVS 226

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++++P +N   N   DIALL+L   V +S Y+ PVCL D  T    L A  G  G V
Sbjct: 81  LEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRA--GYKGRV 138
Query: 313 IGWG-------YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG        + N+     L++  +PIV    C  S         +D  FCAGF+
Sbjct: 139 TGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAST----RIRITDNMFCAGFK 191

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              + C  DSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDACEPDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 33/238 (13%)
Query: 20  VTYGQKTARGQWPWHVALY----RTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPV 75
           +  G     G  PW V L+    R+ G    ++CG SL+S  +V+TAAHC+   P+DK  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFAKHRRSPG--ERFLCGASLISDRWVLTAAHCLLYPPWDKNF 58
Query: 76  DSDTLVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYS 133
             + L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S
Sbjct: 59  TENDLLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 116
Query: 134 MYVRPVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIV 182
            Y+ PVCL D  TA   L A           ++ T   N   G   V ++ +      IV
Sbjct: 117 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIV 172
Query: 183 SITVARDG--LRVCDTKHYVVFT----DVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
              V +D   +R+ D      +        + C GDSGG  V K   ++ WY  GIVS
Sbjct: 173 ERPVCKDSTRIRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 230

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 85  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 142
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCA ++
Sbjct: 143 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAYYK 195

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 29/234 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-----------VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           PVCL D  TA   L A           ++ T   N   G   V ++ +      IV   V
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNL----PIVERPV 172
Query: 187 ARDGLRVCDTKHYVVF------TDVANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
            +D  R+  T +              +   GDSGG  V K   ++ WY  GIVS
Sbjct: 173 CKDSTRIRITDNMFCAGYKPDEGKRGDAAEGDSGGPFVMKSPFNNRWYQMGIVS 226

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWGYDENDRVSE-------ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
            GWG  +    +         L++  +PIV    C  S         +D  FCAG++
Sbjct: 139 TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGYK 191

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  GQ    G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    D 
Sbjct: 50  IVEGQDAEVGLSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTVDD 107
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    + +++I+P +N   N   DIALL+L   ++ S Y+ 
Sbjct: 108 LLVRIGKHSRTRY--ERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIH 165
Query: 138 PVCLWDDSTAPLQLSA-VEGTSVCNGDSGGGMVFKIDSAW-YLRGIVSITVARDGLRVCD 195
           PVCL D  TA   L A  +G     G+        +      +  +V++ +      VC 
Sbjct: 166 PVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERP--VCK 223
Query: 196 TKHYVVFTD-------------VANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
               +  TD               + C GDSGG  V K   ++ WY  GIVS
Sbjct: 224 ASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVS 275

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 256 RVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIG 314
           +++I+P +N   N   DIALL+L   ++ S Y+ PVCL D  TA   L A  G  G V G
Sbjct: 132 KIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHA--GFKGRVTG 189
Query: 315 WGYDEN---DRVSE----ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
           WG         V+E     L++  +P+V    C  S         +D  FCAG++
Sbjct: 190 WGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKAST----RIRITDNMFCAGYK 240

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  GQ    G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    D 
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTVDD 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    + +++I+P +N   N   DIALL+L   ++ S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-VEGTSVCNGDSGGGMVFKIDSAW-YLRGIVSITVARDGLRVCD 195
           PVCL D  TA   L A  +G     G+        +      +  +V++ +      VC 
Sbjct: 117 PVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERP--VCK 174
Query: 196 TKHYVVFTD-------------VANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
               +  TD               + C GDSGG  V K   ++ WY  GIVS
Sbjct: 175 ASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVS 226

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 256 RVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIG 314
           +++I+P +N   N   DIALL+L   ++ S Y+ PVCL D  TA   L A  G  G V G
Sbjct: 83  KIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHA--GFKGRVTG 140
Query: 315 WGYDEN---DRVSE----ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
           WG         V+E     L++  +P+V    C  S         +D  FCAG++
Sbjct: 141 WGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKAST----RIRITDNMFCAGYK 191

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  GQ    G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    D 
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTVDD 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    + +++I+P +N   N   DIALL+L   ++ S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA-VEGTSVCNGDSGGGMVFKIDSAW-YLRGIVSITVARDGLRVCD 195
           PVCL D  TA   L A  +G     G+        +      +  +V++ +      VC 
Sbjct: 117 PVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERP--VCK 174
Query: 196 TKHYVVFTD-------------VANVCNGDSGGGMVFK--IDSAWYLRGIVS 232
               +  TD               + C GDSGG  V K   ++ WY  GIVS
Sbjct: 175 ASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVS 226

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 256 RVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIG 314
           +++I+P +N   N   DIALL+L   ++ S Y+ PVCL D  TA   L A  G  G V G
Sbjct: 83  KIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHA--GFKGRVTG 140
Query: 315 WGYDEN---DRVSE----ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
           WG         V+E     L++  +P+V    C  S         +D  FCAG++
Sbjct: 141 WGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKAST----RIRITDNMFCAGYK 191

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 36/231 (15%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +T G     GQWPW V++   EG+   +VCGGSLVS  +V++AAHC   + + +  +   
Sbjct: 1   ITGGSSAVAGQWPWQVSI-TYEGV---HVCGGSLVSEQWVLSAAHCFPSEHHKEAYE--- 53
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
             + LG +    +S++  V    +K +  +P++      GDIALLQLS  + +S Y+RP+
Sbjct: 54  --VKLGAHQLDSYSEDAKVST--LKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT--- 196
            L      P   ++      C   +G G V    S    + +  + V       C++   
Sbjct: 110 SL------PAAQASFPNGLHCT-VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYN 162
Query: 197 -------KHYVVFTDV--------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                   H+V    V         + C GDSGG +   ++  WYL GIVS
Sbjct: 163 IDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVS 213

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 252 TDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT 311
           + +K +  +P++      GDIALLQLS  + +S Y+RP+ L        Q S   G   T
Sbjct: 71  STLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL-----PAAQASFPNGLHCT 125
Query: 312 VIGWGYDEND---RVSEELKMAIMPIVSHQQC-----LWSNPQFFSQFTSDETFCAGF 361
           V GWG+          + L+   +P++S + C     + + P+    F  ++  CAG+
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPE-EPHFVQEDMVCAGY 182

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 36/231 (15%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +T G     GQWPW V++   EG+   +VCGGSLVS  +V++AAHC   + + +  +   
Sbjct: 1   ITGGSSAVAGQWPWQVSI-TYEGV---HVCGGSLVSEQWVLSAAHCFPSEHHKEAYE--- 53
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
             + LG +    +S++  V    +K +  +P++      GDIALLQLS  + +S Y+RP+
Sbjct: 54  --VKLGAHQLDSYSEDAKVST--LKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT--- 196
            L      P   ++      C   +G G V    S    + +  + V       C++   
Sbjct: 110 SL------PAAQASFPNGLHCT-VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYN 162
Query: 197 -------KHYVVFTDV--------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                   H+V    V         + C GDSGG +   ++  WYL GIVS
Sbjct: 163 IDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVS 213

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 252 TDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT 311
           + +K +  +P++      GDIALLQLS  + +S Y+RP+ L        Q S   G   T
Sbjct: 71  STLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL-----PAAQASFPNGLHCT 125
Query: 312 VIGWGYDEND---RVSEELKMAIMPIVSHQQC-----LWSNPQFFSQFTSDETFCAGF 361
           V GWG+          + L+   +P++S + C     + + P+    F  ++  CAG+
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPE-EPHFVQEDMVCAGY 182

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G     G+WPW V+L+    +   ++CG SL+S N++++AAHC       +  D   
Sbjct: 1   VVGGTDADEGEWPWQVSLH---ALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQ 57
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
              +LG + Q Q S  G VQ +++KR+  +P FN   +  DIALL+L    +YS  VRP+
Sbjct: 58  WTAFLGLHDQSQRSAPG-VQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPI 116
Query: 140 CLWDDS 145
           CL D S
Sbjct: 117 CLPDAS 122

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           +KR+  +P FN   +  DIALL+L    +YS  VRP+CL D S          G+   V 
Sbjct: 80  LKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHV-----FPAGKAIWVT 134
Query: 314 GWGYDENDRVSEE-LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
           GWG+ +        L+   + +++   C         Q  +    C GF
Sbjct: 135 GWGHTQYGGTGALILQKGEIRVINQTTC----ENLLPQQITPRMMCVGF 179

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G     G+WPW V+L+    +   ++CG SL+S N++++AAHC       +  D   
Sbjct: 1   VVGGTDADEGEWPWQVSLH---ALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQ 57
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
              +LG + Q Q S  G VQ +++KR+  +P FN   +  DIALL+L    +YS  VRP+
Sbjct: 58  WTAFLGLHDQSQRSAPG-VQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPI 116
Query: 140 CLWDDS 145
           CL D S
Sbjct: 117 CLPDAS 122

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           +KR+  +P FN   +  DIALL+L    +YS  VRP+CL D S          G+   V 
Sbjct: 80  LKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHV-----FPAGKAIWVT 134
Query: 314 GWGYDENDRVSEE-LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
           GWG+ +        L+   + ++    C         Q  +    C GF
Sbjct: 135 GWGHTQYGGTGALILQKGEIRVIQQTTC----ENLLPQQITPRMMCVGF 179

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 36/231 (15%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +T G     GQWPW V++   EG+   +VCGGSLVS  +V++AAHC   + + +  +   
Sbjct: 1   ITGGSSAVAGQWPWQVSI-TYEGV---HVCGGSLVSEQWVLSAAHCFPSEHHKEAYE--- 53
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
             + LG +    +S++  V    +K +  +P++      GDIALLQLS  + +S Y+RP+
Sbjct: 54  --VKLGAHQLDSYSEDAKVST--LKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC----- 194
            L      P   ++      C   +G G V    S    + +  + V       C     
Sbjct: 110 SL------PAANASFPNGLHCT-VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYN 162
Query: 195 -----DTKHYVVFTDV--------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                +  H+V    V         + C GDSGG +   ++  WYL GIVS
Sbjct: 163 IDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVS 213

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 252 TDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT 311
           + +K +  +P++      GDIALLQLS  + +S Y+RP+ L          S   G   T
Sbjct: 71  STLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL-----PAANASFPNGLHCT 125
Query: 312 VIGWGYDEND---RVSEELKMAIMPIVSHQQC-----LWSNPQFFSQFTSDETFCAGF 361
           V GWG+          + L+   +P++S + C     + + P+    F  ++  CAG+
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPE-EPHFVQEDMVCAGY 182

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 6/136 (4%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  GQ    G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    D 
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTVDD 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  V+    + +++I+P +N   N   DIALL+L   ++ S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA 153
           PVCL D  TA   L A
Sbjct: 117 PVCLPDKQTAAKLLHA 132

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 256 RVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIG 314
           +++I+P +N   N   DIALL+L   ++ S Y+ PVCL D  TA   L A  G  G V G
Sbjct: 83  KIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHA--GFKGRVTG 140
Query: 315 WG 316
           WG
Sbjct: 141 WG 142

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G     G+WPW V+L+    +   ++CG SL+S N++++AAHC       +  D   
Sbjct: 1   VVGGTDADEGEWPWQVSLH---ALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQ 57
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
              +LG + Q Q S  G VQ +++KR+  +P FN   +  DIALL+L    +YS  VRP+
Sbjct: 58  WTAFLGLHDQSQRSAPG-VQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPI 116
Query: 140 CLWDDS 145
            L D S
Sbjct: 117 SLPDAS 122

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 6/136 (4%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80  LVIYLGKYHQHQFSDEGGVQN-KQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVR 137
           L++ +GK+ + ++  E  ++    +++++I+P +N   N   DIAL++L   V +S Y+ 
Sbjct: 59  LLVRIGKHSRTRY--ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 138 PVCLWDDSTAPLQLSA 153
           PVCL D  TA   L A
Sbjct: 117 PVCLPDRETAASLLQA 132

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 81  LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 138
Query: 313 IGWG 316
            GWG
Sbjct: 139 TGWG 142

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 38/229 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+  R +WPW V+L R  G    + CGGSL+   +V+TAAHCV       P   D   +
Sbjct: 4   GQEAPRSKWPWQVSL-RVHGPYWMHFCGGSLIHPQWVLTAAHCV------GPDVKDLAAL 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +    QH +  +   Q   V R+ ++P F ++    DIALL+L   V  S +V  V L 
Sbjct: 57  RVQLREQHLYYQD---QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLP 113
Query: 143 DDST--APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY- 199
             S    P     V G    + D      F +         V + +  +   +CD K++ 
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQ-------VKVPIMEN--HICDAKYHL 164
Query: 200 ---------VVFTDV-------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                    +V  D+        + C GDSGG +V K++  W   G+VS
Sbjct: 165 GAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGPLVCKVNGTWLQAGVVS 213

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 38/229 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+  R +WPW V+L R  G    + CGGSL+   +V+TAAHCV       P   D   +
Sbjct: 4   GQEAPRSKWPWQVSL-RVHGPYWMHFCGGSLIHPQWVLTAAHCV------GPDVKDLAAL 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +    QH +  +   Q   V R+ ++P F ++    DIALL+L   V  S +V  V L 
Sbjct: 57  RVQLREQHLYYQD---QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLP 113
Query: 143 DDST--APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY- 199
             S    P     V G    + D      F +         V + +  +   +CD K++ 
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQ-------VKVPIMEN--HICDAKYHL 164
Query: 200 ---------VVFTDV-------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                    +V  D+        + C GDSGG +V K++  W   G+VS
Sbjct: 165 GAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGPLVCKVNGTWLQAGVVS 213

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 38/229 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+  R +WPW V+L R  G    + CGGSL+   +V+TAAHCV       P   D   +
Sbjct: 4   GQEAPRSKWPWQVSL-RVHGPYWMHFCGGSLIHPQWVLTAAHCV------GPDVKDLAAL 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +    QH +  +   Q   V R+ ++P F ++    DIALL+L   V  S +V  V L 
Sbjct: 57  RVQLREQHLYYQD---QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLP 113
Query: 143 DDST--APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY- 199
             S    P     V G    + D      F +         V + +  +   +CD K++ 
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQ-------VKVPIMEN--HICDAKYHL 164
Query: 200 ---------VVFTDV-------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                    +V  D+        + C GDSGG +V K++  W   G+VS
Sbjct: 165 GAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGPLVCKVNGTWLQAGVVS 213

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 23/219 (10%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  +  G WPW VALY  +      VCG SLVS +++++AAHCV    Y + ++      
Sbjct: 4   GSDSREGAWPWVVALYFDD----QQVCGASLVSRDWLVSAAHCV----YGRNMEPSKWKA 55
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG +     +    ++ + + ++ I P +N      DIA++ L   V+Y+ Y++P+CL 
Sbjct: 56  VLGLHMASNLTSPQ-IETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICL- 113
Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                P +        +C+    G ++++  +A  L+      ++ +  +    ++ +  
Sbjct: 114 -----PEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITE 168
Query: 203 TDV--------ANVCNGDSGGGMVFKIDSAWYLRGIVSI 233
             V         + C GDSGG ++ + ++ W L G+ S 
Sbjct: 169 NMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSF 207

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           + ++ I P +N      DIA++ L   V+Y+ Y++P+CL +++          GR  ++ 
Sbjct: 75  IDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQV-----FPPGRICSIA 129
Query: 314 GWG-YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
           GWG        ++ L+ A +P++S+++C    P++     ++   CAG+ 
Sbjct: 130 GWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEY---NITENMVCAGYE 176

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+ T RG  PW V L  ++       CG  L+  ++V+TAAHC+         +S  L++
Sbjct: 4   GKMTRRGDSPWQVVLLDSKK---KLACGAVLIHPSWVLTAAHCMD--------ESKKLLV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG+Y   ++  E    +  +K V ++P ++ S    DIALL L+     S  + P+CL 
Sbjct: 53  RLGEYDLRRW--EKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLP 110
Query: 143 DDSTAPLQLSAVEGTSVCNG---DSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
           D   A  +L+     ++  G    S      K +  + L  I    V  +      +   
Sbjct: 111 DSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMV 170
Query: 200 V-------VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH-YVVF 251
                   +  D  + C GDSGG MV      W+L G+VS          C   H Y V+
Sbjct: 171 SENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEG------CGLLHNYGVY 224
Query: 252 TDVKR 256
           T V R
Sbjct: 225 TKVSR 229

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           D+K V ++P ++ S    DIALL L+     S  + P+CL D   A  +L+   G++  V
Sbjct: 70  DIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQA-GQETLV 128
Query: 313 IGWGYDENDRVSEE------LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            GWGY  +     +      L    +P+V H +C     +  S   S+   CAG 
Sbjct: 129 TGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNEC----SEVMSNMVSENMLCAGI 179

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+ T RG  PW V L  ++       CG  L+  ++V+TAAHC+         +S  L++
Sbjct: 4   GKMTRRGDSPWQVVLLDSKK---KLACGAVLIHPSWVLTAAHCMD--------ESKKLLV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG+Y   ++  E    +  +K V ++P ++ S    DIALL L+     S  + P+CL 
Sbjct: 53  RLGEYDLRRW--EKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLP 110
Query: 143 DDSTAPLQLSAVEGTSVCNG---DSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
           D   A  +L+     ++  G    S      K +  + L  I    V  +      +   
Sbjct: 111 DSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMV 170
Query: 200 V-------VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH-YVVF 251
                   +  D  + C GDSGG MV      W+L G+VS          C   H Y V+
Sbjct: 171 SENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEG------CGLLHNYGVY 224
Query: 252 TDVKR 256
           T V R
Sbjct: 225 TKVSR 229

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           D+K V ++P ++ S    DIALL L+     S  + P+CL D   A  +L+   G++  V
Sbjct: 70  DIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQA-GQETLV 128
Query: 313 IGWGYDENDRVSEE------LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            GWGY  +     +      L    +P+V H +C     +  S   S+   CAG 
Sbjct: 129 TGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNEC----SEVMSNMVSENMLCAGI 179

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 68/240 (28%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G++   G WPW V+L    G    + CGGSL++ N+V+TAAHC           SD 
Sbjct: 16  IVNGEEAVPGSWPWQVSLQDKTGF---HFCGGSLINENWVVTAAHCGV-------TTSD- 64
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            V+  G++ Q   S++  +Q  ++ +V     +NS     DI LL+LS+   +S  V  V
Sbjct: 65  -VVVAGEFDQGSSSEK--IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAV 121
Query: 140 CL----------------------WDDSTAPLQL-------------------------- 151
           CL                      + ++  P +L                          
Sbjct: 122 CLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMI 181
Query: 152 -SAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCN 210
            +   G S C GDSGG +V K + AW L GIVS      G   C T    V+  V  + N
Sbjct: 182 CAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSW-----GSSTCSTSTPGVYARVTALVN 236

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 68/240 (28%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G++   G WPW V+L    G    + CGGSL++ N+V+TAAHC           SD 
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGF---HFCGGSLINENWVVTAAHC-------GVTTSD- 49
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            V+  G++ Q   S++  +Q  ++ +V     +NS     DI LL+LS+   +S  V  V
Sbjct: 50  -VVVAGEFDQGSSSEK--IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAV 106
Query: 140 CL----------------------WDDSTAPLQL-------------------------- 151
           CL                      + ++  P +L                          
Sbjct: 107 CLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMI 166
Query: 152 -SAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCN 210
            +   G S C GDSGG +V K + AW L GIVS      G   C T    V+  V  + N
Sbjct: 167 CAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSW-----GSSTCSTSTPGVYARVTALVN 221

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 110/244 (45%), Gaps = 27/244 (11%)
Query: 7   SCGTVVYNKAQPLVTYGQKTARGQWPWHVALY----RTEGINLSYVCGGSLVSVNYVITA 62
           +CG   Y + Q   T G  T     PW  A++    R+ G    ++CGG L+S  +V+TA
Sbjct: 1   TCGLRKYKEPQLHSTGGLFTDITSHPWQAAIFAQNRRSSGER--FLCGGILISSCWVLTA 58
Query: 63  AHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIA 122
           AHC     + +    D L + LG+ ++ +  +E   Q  +VK+  ++  F+   Y  DIA
Sbjct: 59  AHC-----FQESYLPDQLKVVLGRTYRVKPGEE--EQTFKVKKYIVHKEFDDDTYNNDIA 111
Query: 123 LLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSG----------GGM 168
           LLQL SD       S  VR +CL + +      +  E +      S           G +
Sbjct: 112 LLQLKSDSPQCAQESDSVRAICLPEANLQLPDWTECELSGYGKHKSSSPFYSEQLKEGHV 171
Query: 169 VFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLR 228
                S    + + + TV  + L   DT+   ++ +V + C GDSGG +V   D+   L 
Sbjct: 172 RLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNVHDACQGDSGGPLVCMNDNHMTLL 231
Query: 229 GIVS 232
           GI+S
Sbjct: 232 GIIS 235

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 111/252 (44%), Gaps = 19/252 (7%)
Query: 8   CGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
           CG  ++       V  G+      WPW ++L         + CGG+L++ N+V+TAAHC+
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 67  TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQL 126
           +        ++ T  + LGK +  +  DE G     V  + ++  +NS     DIAL++L
Sbjct: 61  S--------NTLTYRVALGK-NNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKL 111
Query: 127 SSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIV--SI 184
           +  V+    ++  CL  + +   Q      T      + G +  ++     L+ +V  + 
Sbjct: 112 AETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQG--LQPVVDYAT 169
Query: 185 TVARD--GLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRV 242
              RD  G  V +T        V + CNGDSGG +  + D  W +RGIVS      GL  
Sbjct: 170 CSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFG---SGLSC 226
Query: 243 CDTKHYVVFTDV 254
              K   VFT V
Sbjct: 227 NTFKKPTVFTRV 238

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 91/234 (38%), Gaps = 63/234 (26%)
Query: 1   MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVI 60
           +C  D  C T    K +P +  G  + RG+WPW V L+ T      ++CGGS++   +++
Sbjct: 373 LCKMDNECTT----KIKPRIVGGTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWIL 427
Query: 61  TAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGD 120
           TAAHC       K      L +Y G  +Q +  ++      Q   +H       S Y  D
Sbjct: 428 TAAHCFYGVESPK-----ILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGY--D 480
Query: 121 IALLQLSSDVDYSMYVRPVCL-------------W----------DDSTAPLQLSAVE-- 155
           IALL+L + V+Y+   RP+CL             W          D     LQ + +   
Sbjct: 481 IALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLV 540
Query: 156 --------------------------GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
                                     G   C GDSGG +  K +  W+L GI S
Sbjct: 541 TNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITS 594

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
           + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+CL       +  +
Sbjct: 453 EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYT 512
Query: 304 AVEGRDGTVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
                D  V GWGY +  D++   L+ A +P+V++++C     ++     + +  CAG+R
Sbjct: 513 -----DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGYR 564
Query: 363 N 363
Sbjct: 565 E 565

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+  R +WPW V+L R       + CGGSL+   +V+TAAHCV       P   D   +
Sbjct: 4   GQEAPRSKWPWQVSL-RVRDRYWMHFCGGSLIHPQWVLTAAHCV------GPDVKDLATL 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +    QH +  +   Q   V R+ ++P F       DIALL+L   V+ S  V  V L 
Sbjct: 57  RVQLREQHLYYQD---QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP 113
Query: 143 DDST--APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY- 199
             S    P     V G    + D      F +         V + +  +   +CD K++ 
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQ-------VKVPIMEN--HICDAKYHL 164
Query: 200 ---------VVFTDV-------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                    ++  D+        + C GDSGG +V K++  W   G+VS
Sbjct: 165 GAYTGDDVRIIRDDMLCAGNSQRDSCKGDSGGPLVCKVNGTWLQAGVVS 213

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+  R +WPW V+L R       + CGGSL+   +V+TAAHCV       P   D   +
Sbjct: 4   GQEAPRSKWPWQVSL-RVRDRYWMHFCGGSLIHPQWVLTAAHCV------GPDVKDLATL 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +    QH +  +   Q   V R+ ++P F       DIALL+L   V+ S  V  V L 
Sbjct: 57  RVQLREQHLYYQD---QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP 113
Query: 143 DDST--APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY- 199
             S    P     V G    + D      F +         V + +  +   +CD K++ 
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQ-------VKVPIMEN--HICDAKYHL 164
Query: 200 ---------VVFTDV-------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                    ++  D+        + C GDSGG +V K++  W   G+VS
Sbjct: 165 GAYTGDDVRIIRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVS 213

>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 128

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+    G WPW V+L    G    + CGGSL+S ++V+TAAHC  K        SD  V+
Sbjct: 1   GEDAIPGSWPWQVSLQDKTGF---HFCGGSLISEDWVVTAAHCGVKT-------SD--VV 48
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
             G++ Q   SDE  +Q  ++ +V   P FN      DI LL+L++   +S  V  VCL 
Sbjct: 49  VAGEFDQG--SDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLP 106
Query: 142 -WDDSTAPLQLSAVEG 156
             DD   P  + A  G
Sbjct: 107 NVDDDFPPGTVCATTG 122

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 35/248 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+   +G+ PW V L     +N + +CGG+L++  +V++AAHC     +DK  +   L+ 
Sbjct: 4   GKDCPKGECPWQVLLL----VNGAQLCGGTLINTIWVVSAAHC-----FDKIKNWRNLIA 54
Query: 83  YLGKYHQHQFSD-EGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG   +H  S+ +G  Q+++V +V I  T+       DIALL+L   V  + +V P+CL
Sbjct: 55  VLG---EHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCL 111
Query: 142 WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSIT--VARDGL----RVCD 195
            + + +   L+ V  + V    SG G +    +   +  ++++   + +D L    +V D
Sbjct: 112 PERTFSERTLAFVRFSLV----SGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGD 167
Query: 196 TKHYVVFTDVA-------NVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 248
           + +   +   A       + C GDSGG         WYL GIVS      G       H+
Sbjct: 168 SPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSW-----GQGCATVGHF 222
Query: 249 VVFTDVKR 256
            V+T V +
Sbjct: 223 GVYTRVSQ 230

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 115/241 (47%), Gaps = 21/241 (8%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G+      WPW ++L   +     + CGG+L++ N+V+TAAHC++        ++ T
Sbjct: 1   VVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCIS--------NTRT 52
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
             + +GK +  +  DE G     V  +H++  +N+     DIAL++L+  V+ S  ++  
Sbjct: 53  YRVAVGK-NNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVA 111
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS-ITVARD---GLRVCD 195
           CL +  +   +      T      + G +  K+     L+ +V   T +R    G RV  
Sbjct: 112 CLPEKDSLLPKDYPCYVTGWGRLWTNGPIADKLQQG--LQPVVDHATCSRIDWWGFRVKK 169
Query: 196 TKHYVVFTDVANVCNGDSGGGMVFKIDS-AWYLRGIVSITVARDGLRVCDT-KHYVVFTD 253
           T        V + CNGDSGG +  ++++ +W + GIVS    R     C+T K  VV+T 
Sbjct: 170 TMVCAGGDGVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRG----CNTRKKPVVYTR 225
Query: 254 V 254
           V
Sbjct: 226 V 226

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 233 ITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 292
           + V ++ L V D +  + F  V  +H++  +N+     DIAL++L+  V+ S  ++  CL
Sbjct: 55  VAVGKNNLEVEDEEGSL-FVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACL 113
Query: 293 WD-DSTAPLQLSAVEGRDGTVIGWGYD-ENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQ 350
            + DS  P            V GWG    N  ++++L+  + P+V H  C  S   ++  
Sbjct: 114 PEKDSLLPKDYPCY------VTGWGRLWTNGPIADKLQQGLQPVVDHATC--SRIDWWGF 165
Query: 351 FTSDETFCAG 360
                  CAG
Sbjct: 166 RVKKTMVCAG 175

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+  R +WPW V+L R       + CGGSL+   +V+TAAHC+       P   D   +
Sbjct: 4   GQEAPRSKWPWQVSL-RVRDRYWMHFCGGSLIHPQWVLTAAHCL------GPDVKDLATL 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +    QH +  +   Q   V R+ ++P F       DIALL+L   V+ S  V  V L 
Sbjct: 57  RVQLREQHLYYQD---QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP 113
Query: 143 DDST--APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY- 199
             S    P     V G    + D      F +         V + +  +   +CD K++ 
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQ-------VKVPIMEN--HICDAKYHL 164
Query: 200 ---------VVFTDV-------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                    ++  D+        + C GDSGG +V K++  W   G+VS
Sbjct: 165 GAYTGDDVRIIRDDMLCAGNSQRDSCKGDSGGPLVCKVNGTWLQAGVVS 213

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 18/240 (7%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G+      WPW ++L    G +  + CGGSL+   +V+TAAHCV          + T
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD--------SART 52
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVR 137
             + LG+++ +  ++EG  Q   V  V I+  +NS +  G  DIALL+L++    +  V+
Sbjct: 53  WRVVLGEHNLN--TNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQ 110
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
              L   +      +    T      +GG +   +  AW L  +   T +  G      K
Sbjct: 111 LAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAW-LPSVDHATCSSSGWWGSTVK 169
Query: 198 HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVK 255
             +V       + CNGDSGG +  +++ ++Y+ G+ S  V+  G     +K   VFT V 
Sbjct: 170 TTMVCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSF-VSSSGCNA--SKKPTVFTRVS 226

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 115/250 (46%), Gaps = 39/250 (15%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+   +G+ PW V L     +N + +CGG+L++  +V++AAHC     +DK  +   L+ 
Sbjct: 4   GKVCPKGECPWQVLLL----VNGAQLCGGTLINTIWVVSAAHC-----FDKIKNWRNLIA 54
Query: 83  YLGKYHQHQFSD-EGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG   +H  S+ +G  Q+++V +V I  T+       DIALL+L   V  + +V P+CL
Sbjct: 55  VLG---EHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCL 111
Query: 142 WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVAR--------DGLRV 193
            + + +   L+ V  + V    SG G +  +D       ++ + V R           +V
Sbjct: 112 PERTFSERTLAFVRFSLV----SGWGQL--LDRGATALELMVLNVPRLMTQDCLQQSRKV 165
Query: 194 CDTKHYVVFTDVA-------NVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 246
            D+ +   +   A       + C GDSGG         WYL GIVS      G       
Sbjct: 166 GDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSW-----GQGCATVG 220
Query: 247 HYVVFTDVKR 256
           H+ V+T V +
Sbjct: 221 HFGVYTRVSQ 230

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K + +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSS- 161
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 162 -FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E    S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K + +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGEQSTRLKMLEVPYVDRNSCKL--SS 160
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 161 SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E    S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 45/242 (18%)
Query: 13  YNKAQP--------LVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAH 64
           +N+ QP         +  GQ+   G+ PW   L   E       CGG+++S  Y++TAAH
Sbjct: 1   FNQTQPERGDNNLTRIVGGQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAH 57
Query: 65  CVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALL 124
           C+ +        +    + +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L
Sbjct: 58  CLYQ--------AKRFKVRVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVL 107
Query: 125 QLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLR 179
           +L + + + M V P CL    W +ST   Q + +         SG G    K   +  L+
Sbjct: 108 RLKTPITFRMNVAPACLPERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLK 159
Query: 180 GIVSITVARDGLRVCDTKHYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGI 230
            +    V R+  ++  +  +++          T   + C GDSGG  V +    +++ GI
Sbjct: 160 MLEVPYVDRNSCKL--SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGI 217
Query: 231 VS 232
           VS
Sbjct: 218 VS 219

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 85  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 138
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 139 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 188

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 36/245 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+    GQ+PW V L       +   CGGS+++  +V+TAAHC+  +P  K      + +
Sbjct: 4   GENAKPGQFPWQVLLNG----KIDAFCGGSIINEKWVVTAAHCI--EPGVK------ITV 51
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVC 140
             G+Y+  +   E   Q + V R   + ++N++   Y  DIALL+L   +  + YV P+C
Sbjct: 52  VAGEYNTEE--TEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPIC 109
Query: 141 LWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV 200
           + D     + L    G       SG G VF    +  +   + + +      +  TK + 
Sbjct: 110 IADKEYTNIFLKFGSGYV-----SGWGRVFNRGRSATILQYLKVPLVDRATCLRSTK-FT 163
Query: 201 VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 251
           +++++          + C GDSGG  V +++   +L GI+S      G        Y ++
Sbjct: 164 IYSNMFCAGFHEGGKDSCQGDSGGPHVTEVEGTSFLTGIISW-----GEECAVKGKYGIY 218
Query: 252 TDVKR 256
           T V R
Sbjct: 219 TKVSR 223

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 231 VSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 288
           V ITV        +T+      +V R   + ++N++   Y  DIALL+L   +  + YV 
Sbjct: 47  VKITVVAGEYNTEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVT 106
Query: 289 PVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN-DRVSEELKMAIMPIVSHQQCLWSNPQF 347
           P+C+ D     + L       G V GWG   N  R +  L+   +P+V    CL S    
Sbjct: 107 PICIADKEYTNIFLKF---GSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRS---- 159
Query: 348 FSQFT-SDETFCAGF 361
            ++FT     FCAGF
Sbjct: 160 -TKFTIYSNMFCAGF 173

>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 131

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G+    G WPW V+L    G    + CGGSL+S ++V+TAAHC  K        SD 
Sbjct: 1   IVNGEDAIPGSWPWQVSLQDKTGF---HFCGGSLISEDWVVTAAHCGVKT-------SD- 49
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            V+  G++ Q   SDE  +Q  ++ +V   P FN      DI LL+L++   +S  V  V
Sbjct: 50  -VVVAGEFDQG--SDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAV 106
Query: 140 CL--WDDSTAPLQLSAVEG 156
            L   DD   P  + A  G
Sbjct: 107 SLPNVDDDFPPGTVCATTG 125

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 23/219 (10%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G WPW V LY  + +    +CG SLVS +++++AAHCV    Y + ++      
Sbjct: 4   GSDAKEGAWPWVVGLYYDDRL----LCGASLVSSDWLVSAAHCV----YGRNLEPSKWTA 55
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG + +   +    V  + +  + I P +N      DIA++ L   V+Y+ Y++P+ L 
Sbjct: 56  ILGLHMKSNLTSPQTVP-RLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISL- 113
Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                P +         C+    G +V++  +A  L+      ++ +  +    ++ +  
Sbjct: 114 -----PEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITE 168
Query: 203 TDVA--------NVCNGDSGGGMVFKIDSAWYLRGIVSI 233
             +         + C GDSGG ++ + ++ W+L G+ S 
Sbjct: 169 NMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSF 207

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           +  + I P +N      DIA++ L   V+Y+ Y++P+ L +++          GR+ ++ 
Sbjct: 75  IDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQV-----FPPGRNCSIA 129
Query: 314 GWG-YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
           GWG        ++ L+ A +P++S+++C    P++     ++   CAG+ 
Sbjct: 130 GWGTVVYQGTTADILQEADVPLLSNERCQQQMPEY---NITENMICAGYE 176

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 94/218 (43%), Gaps = 49/218 (22%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G K  +   PWHVA+YR       Y+CGG L+  N+V+TAAHC     YD     D   +
Sbjct: 4   GFKCEKNSQPWHVAVYRYT----QYLCGGVLLDPNWVLTAAHC-----YD-----DNYKV 49
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
           +LGK   + F DE   Q++ V +   +P FN S           +Y  D+ LL+LS   D
Sbjct: 50  WLGK--NNLFKDEPSAQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPAD 107
Query: 132 YSMYVRPVCLWDDSTAPLQLSAVEGTSVCNG-DSGGGMVFKIDSAWYLRGIVSITVARDG 190
            +  V+P+      T P +   +  T + +G  S     F+     Y    V++ +  + 
Sbjct: 108 ITDTVKPI------TLPTEEPKLGSTCLASGWGSITPTKFQFTDDLY---CVNLKLLPN- 157
Query: 191 LRVCDTKHYVVFTDV----------ANVCNGDSGGGMV 218
              C   H    TD            + C GDSGG ++
Sbjct: 158 -EDCAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPLI 194

>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 131

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 14/122 (11%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G++   G WPW V+L    G    + CGGSL++ N+V+TAAHC           SD 
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGF---HFCGGSLINENWVVTAAHC-------GVTTSD- 49
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            V+  G++ Q   S++  +Q  ++ +V     +NS     DI LL+LS+   +S  V  V
Sbjct: 50  -VVVAGEFDQGSSSEK--IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAV 106
Query: 140 CL 141
           CL
Sbjct: 107 CL 108

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSS- 161
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 162 -FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSS- 161
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 162 -FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSS- 161
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 162 -FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL--SS 160
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 161 SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL--SS 160
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 161 SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL--SS 160
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 161 SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL--SS 160
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 161 SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    +
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSS- 161
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GD+GG  V +    +++ GIVS
Sbjct: 162 -FIITQNMFCAGYDTKQEDACQGDAGGPHVTRFKDTYFVTGIVS 204

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 40/197 (20%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           PWHVA+YR       Y CGG L+  N+V+TAAHC           +D   ++LGK   + 
Sbjct: 16  PWHVAVYRFN----KYQCGGVLLDRNWVLTAAHCY----------NDKYQVWLGK--NNF 59
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVC 140
             DE   Q++ V +   +P FN S           +Y  D+ LL+LS   D +  V+P+ 
Sbjct: 60  LEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPI- 118
Query: 141 LWDDSTAPLQLSAVEGTSVCNG-DSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
                T P +   +  T + +G  S   + FK     Y   +  + +       CD  H 
Sbjct: 119 -----TLPTEEPKLGSTCLASGWGSTTPIKFK-----YPDDLQCVNLKLLPNEDCDKAHE 168
Query: 200 VVFTDVANVCNGDSGGG 216
           +  TD A +C G+  GG
Sbjct: 169 MKVTD-AMLCAGEMDGG 184

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 37/227 (16%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G+    GQ+PW V L       +   CGGS+V+  +++TAAHC         V++  
Sbjct: 1   VVGGEDAKPGQFPWQVVLNG----KVDAFCGGSIVNEKWIVTAAHC---------VETGV 47
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 137
            +  +   H  +   E   Q + V R+  +  FN++   Y  DIALL+L   +  + YV 
Sbjct: 48  KITVVAGEHNIE-ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVT 106
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
           P+C+ D     + L    G       SG G VF    A  +   + + +      +  TK
Sbjct: 107 PICIADKEYTNIFLKFGSGYV-----SGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTK 161
Query: 198 HYVVFTDVANV------------CNGDSGGGMVFKIDSAWYLRGIVS 232
               FT   N+            C GDSGG  V +++   +L GI+S
Sbjct: 162 ----FTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIIS 204

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 231 VSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 288
           V ITV      + +T+H     +V R+  +  FN++   Y  DIALL+L   +  + YV 
Sbjct: 47  VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVT 106
Query: 289 PVCLWDDSTAPLQLSAVEGRDGTVIGWG-YDENDRVSEELKMAIMPIVSHQQCLWSNPQF 347
           P+C+ D     + L       G V GWG      R +  L+   +P+V    CL S    
Sbjct: 107 PICIADKEYTNIFLKF---GSGYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRS---- 159
Query: 348 FSQFT-SDETFCAGFR 362
            ++FT ++  FCAGF 
Sbjct: 160 -TKFTITNNMFCAGFH 174

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 37/224 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +    K    D    
Sbjct: 4   GQECKDGECPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQAKRFKVRVGD---- 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
                 ++  ++EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 57  ------RNTAAEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 142 ---WDDSTAPLQLSAVEGTSVCNGDSGGGMVF-KIDSAWYLRGIVSITVARDGLRVCDTK 197
              W +ST   Q + +         SG G    K   +  L+ +    V R+  ++  + 
Sbjct: 111 ERDWAESTLMTQKTGIV--------SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSS- 161
Query: 198 HYVVF---------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +++          T   + C GDSGG  V +    +++ GIVS
Sbjct: 162 -FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+ V  +  F    Y  DIA+L+L + + + M V P CL    W +ST   Q      +
Sbjct: 70  EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            G V G+G   E  R S  LKM  +P V    C  S+    +Q      FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQ----NMFCAGY 173

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 83/212 (39%), Gaps = 59/212 (27%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           Y G  +Q + +++      Q   +H       S Y  DIALL+L + V+Y+   RP+CL 
Sbjct: 58  YSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYADSQRPICLP 115
Query: 142 ------------W----------DDSTAPLQLSAVE------------------------ 155
                       W          D     LQ + +                         
Sbjct: 116 SKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAG 175
Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
               G   C GDSGG +  K +  W+L GI S
Sbjct: 176 YREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 251 FTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           F  V+ + I+  +  +    DIALL+L + V+Y+   RP+CL       +  +     D 
Sbjct: 73  FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYT-----DC 127
Query: 311 TVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
            V GWGY +  D++   L+ A +P+V++++C     ++     + +  CAG+R 
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGYRE 178

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G++    CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 29  WPWQVSLRTRFGMHF---CGGTLISPEWVLTAAHCLEKSP-----RPSSYKVILGAHQEV 80
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 81  NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVAD 132
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----HYVVFTD 204
                + G     G  G G++ +         + +     +G RV  T+    H    TD
Sbjct: 133 RTECFITGWGETQGTFGAGLLMEAQLPVIENKVCNRYEFLNG-RVQSTELCAGHLAGGTD 191
Query: 205 VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C GDSGG +V      + L+G+ S
Sbjct: 192 ---SCQGDSGGPLVCFEKDKYILQGVTS 216

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 18/216 (8%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G  +Q +  ++      Q   +H       S Y  DIALL+L + V+Y+   RP+CL 
Sbjct: 58  YSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYADSQRPICL- 114
Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK--HYV 200
               +    + +       G     +  KI +      I  +T      R    K  H +
Sbjct: 115 ---PSKGDRNVIYTDCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKM 171
Query: 201 VFTDV----ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           +         + C GDSGG +  K +  W+L GI S
Sbjct: 172 ICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L   + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+CL       
Sbjct: 62  LNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRN 121
Query: 300 LQLSAVEGRDGTVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
           +  +     D  V GWGY    D++   L+ A +P+V++++C     ++     + +  C
Sbjct: 122 VIYT-----DCWVTGWGYRALRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMIC 173
Query: 359 AGFRN 363
           AG+R 
Sbjct: 174 AGYRE 178

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 82/212 (38%), Gaps = 59/212 (27%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           Y G  +Q +  ++      Q   +H       S Y  DIALL+L + V+Y+   RP+CL 
Sbjct: 58  YSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYTDSQRPICLP 115
Query: 142 ------------W----------DDSTAPLQLSAVE------------------------ 155
                       W          D     LQ + +                         
Sbjct: 116 SKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAG 175
Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
               G   C GDSGG +  K +  W+L GI S
Sbjct: 176 YREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L   + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+CL       
Sbjct: 62  LNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRN 121
Query: 300 LQLSAVEGRDGTVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
           +  +     D  V GWGY +  D++   L+ A +P+V++++C     ++     + +  C
Sbjct: 122 VIYT-----DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMIC 173
Query: 359 AGFRN 363
           AG+R 
Sbjct: 174 AGYRE 178

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 82/212 (38%), Gaps = 59/212 (27%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           Y G  +Q +  ++      Q   +H       S Y  DIALL+L + V+Y+   RP+CL 
Sbjct: 58  YSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYADSQRPICLP 115
Query: 142 ------------W----------DDSTAPLQLSAVE------------------------ 155
                       W          D     LQ + +                         
Sbjct: 116 SKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAG 175
Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
               G   C GDSGG +  K +  W+L GI S
Sbjct: 176 YREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L   + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+CL       
Sbjct: 62  LNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRN 121
Query: 300 LQLSAVEGRDGTVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
           +  +     D  V GWGY +  D++   L+ A +P+V++++C     ++     + +  C
Sbjct: 122 VIYT-----DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMIC 173
Query: 359 AGFRN 363
           AG+R 
Sbjct: 174 AGYRE 178

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 37/227 (16%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G+    GQ+PW V L       +   CGGS+V+  +++TAAHC         V++  
Sbjct: 1   VVGGEDAKPGQFPWQVVLNG----KVDAFCGGSIVNEKWIVTAAHC---------VETGV 47
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 137
            +  +   H  +   E   Q + V R+  +  FN++   Y  DIALL+L   +  + YV 
Sbjct: 48  KITVVAGEHNIE-ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVT 106
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
           P+C+ D     + L    G       SG G VF    +  +   + + +      +  TK
Sbjct: 107 PICIADKEYTNIFLKFGSGYV-----SGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK 161
Query: 198 HYVVFTDVANV------------CNGDSGGGMVFKIDSAWYLRGIVS 232
               FT   N+            C GDSGG  V +++   +L GI+S
Sbjct: 162 ----FTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIIS 204

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 231 VSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 288
           V ITV      + +T+H     +V R+  +  FN++   Y  DIALL+L   +  + YV 
Sbjct: 47  VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVT 106
Query: 289 PVCLWDDSTAPLQLSAVEGRDGTVIGWG-YDENDRVSEELKMAIMPIVSHQQCLWSNPQF 347
           P+C+ D     + L       G V GWG      R +  L+   +P+V    CL S    
Sbjct: 107 PICIADKEYTNIFLKF---GSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS---- 159
Query: 348 FSQFT-SDETFCAGFR 362
            ++FT ++  FCAGF 
Sbjct: 160 -TKFTITNNMFCAGFH 174

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 91/214 (42%), Gaps = 38/214 (17%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G+   + CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 573 WPWQVSLRTRFGM---HFCGGTLISPEWVLTAAHCLEKSPR-----PSSYKVILGAHQEV 624
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 625 NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVAD 676
Query: 149 LQLSAVEGTSVCNGDSGGGMVFK----------IDSAWYLRGIVSITVARDGLRVCDTKH 198
                + G     G  G G++ +           +   +L G V  T    G       H
Sbjct: 677 RTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAG-------H 729
Query: 199 YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               TD    C GDSGG +V      + L+G+ S
Sbjct: 730 LAGGTD---SCQGDSGGPLVCFEKDKYILQGVTS 760

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G++    CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 32  WPWQVSLRTRFGMHF---CGGTLISPEWVLTAAHCLEKSP-----RPSSYKVILGAHQEV 83
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 84  NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVAD 135
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----HYVVFTD 204
                + G     G  G G++ +         + +     +G RV  T+    H    TD
Sbjct: 136 RTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG-RVQSTELCAGHLAGGTD 194
Query: 205 VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C GDSGG +V      + L+G+ S
Sbjct: 195 ---SCQGDSGGPLVCFEKDKYILQGVTS 219

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G++    CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 29  WPWQVSLRTRFGMHF---CGGTLISPEWVLTAAHCLEKSP-----RPSSYKVILGAHQEV 80
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 81  NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVAD 132
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----HYVVFTD 204
                + G     G  G G++ +         + +     +G RV  T+    H    TD
Sbjct: 133 RTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG-RVQSTELCAGHLAGGTD 191
Query: 205 VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C GDSGG +V      + L+G+ S
Sbjct: 192 ---SCQGDSGGPLVCFEKDKYILQGVTS 216

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 31/224 (13%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G+    GQ+PW V L       +   CGGS+V+  +++TAAHC         V++  
Sbjct: 1   VVGGEDAKPGQFPWQVVLNG----KVDAFCGGSIVNEKWIVTAAHC---------VETGV 47
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 137
            +  +   H  +   E   Q + V R+  +  +N++   Y  DIALL+L   +  + YV 
Sbjct: 48  KITVVAGEHNIE-ETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVT 106
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
           P+C+ D     + L    G       SG G VF    +  +   + + +      +  TK
Sbjct: 107 PICIADKEYTNIFLKFGSGYV-----SGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK 161
Query: 198 HYVVFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            + ++ ++          + C GDSGG  V +++   +L GI+S
Sbjct: 162 -FTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIIS 204

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 231 VSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 288
           V ITV      + +T+H     +V R+  +  +N++   Y  DIALL+L   +  + YV 
Sbjct: 47  VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVT 106
Query: 289 PVCLWDDSTAPLQLSAVEGRDGTVIGWG-YDENDRVSEELKMAIMPIVSHQQCLWSNPQF 347
           P+C+ D     + L       G V GWG      R +  L+   +P+V    CL S    
Sbjct: 107 PICIADKEYTNIFLKF---GSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS---- 159
Query: 348 FSQFT-SDETFCAGFR 362
            ++FT  +  FCAGF 
Sbjct: 160 -TKFTIYNNMFCAGFH 174

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G++    CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 32  WPWQVSLRTRFGMHF---CGGTLISPEWVLTAAHCLEKSP-----RPSSYKVILGAHQEV 83
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 84  NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVAD 135
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----HYVVFTD 204
                + G     G  G G++ +         + +     +G RV  T+    H    TD
Sbjct: 136 RTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG-RVQSTELCAGHLAGGTD 194
Query: 205 VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C GD+GG +V      + L+G+ S
Sbjct: 195 ---SCQGDAGGPLVCFEKDKYILQGVTS 219

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G    + CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 28  WPWQVSLRTRFG---QHFCGGTLISPEWVLTAAHCLEKSP-----RPSSYKVILGAHQEV 79
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 80  NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYMVAD 131
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----HYVVFTD 204
                + G     G  G G++ +         + +     +G RV  T+    H    TD
Sbjct: 132 RTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG-RVQSTELCAGHLAGGTD 190
Query: 205 VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C GDSGG +V      + L+G+ S
Sbjct: 191 ---SCQGDSGGPLVCFEKDKYILQGVTS 215

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G++    CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 31  WPWQVSLRTRFGMHF---CGGTLISPEWVLTAAHCLEKSP-----RPSSYKVILGAHQEV 82
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 83  NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVAD 134
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----HYVVFTD 204
                + G     G  G G++ +         + +     +G RV  T+    H    TD
Sbjct: 135 RTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG-RVQSTELCAGHLAGGTD 193
Query: 205 VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C GD+GG +V      + L+G+ S
Sbjct: 194 ---SCQGDAGGPLVCFEKDKYILQGVTS 218

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 37/227 (16%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G+    GQ+PW V L       +   CGGS+V+  +++TAAHC         V++  
Sbjct: 1   VVGGEDAKPGQFPWQVVLNG----KVDAFCGGSIVNEKWIVTAAHC---------VETGV 47
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 137
            +  +   H  +   E   Q + V R+  +  +N++   Y  DIALL+L   +  + YV 
Sbjct: 48  KITVVAGEHNIE-ETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVT 106
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
           P+C+ D     + L    G       SG G VF    +  +   + + +      +  TK
Sbjct: 107 PICIADKEYTNIFLKFGSGYV-----SGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK 161
Query: 198 HYVVFTDVANV------------CNGDSGGGMVFKIDSAWYLRGIVS 232
               FT   N+            C GDSGG  V +++   +L GI+S
Sbjct: 162 ----FTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIIS 204

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 231 VSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 288
           V ITV      + +T+H     +V R+  +  +N++   Y  DIALL+L   +  + YV 
Sbjct: 47  VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVT 106
Query: 289 PVCLWDDSTAPLQLSAVEGRDGTVIGWG-YDENDRVSEELKMAIMPIVSHQQCLWSNPQF 347
           P+C+ D     + L       G V GWG      R +  L+   +P+V    CL S    
Sbjct: 107 PICIADKEYTNIFLKF---GSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS---- 159
Query: 348 FSQFT-SDETFCAGFR 362
            ++FT ++  FCAGF 
Sbjct: 160 -TKFTITNNMFCAGFH 174

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G++    CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 30  WPWQVSLRTRFGMHF---CGGTLISPEWVLTAAHCLEKSP-----RPSSYKVILGAHQEV 81
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 82  NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVAD 133
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----HYVVFTD 204
                + G     G  G G++ +         + +     +G RV  T+    H    TD
Sbjct: 134 RTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG-RVQSTELCAGHLAGGTD 192
Query: 205 VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C GD+GG +V      + L+G+ S
Sbjct: 193 ---SCQGDAGGPLVCFEKDKYILQGVTS 217

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           WPW V+L    G++    CGG+L+S  +V+TAAHC+ K P        +  + LG + + 
Sbjct: 29  WPWQVSLRTRFGMHF---CGGTLISPEWVLTAAHCLEKSP-----RPSSYKVILGAHQEV 80
Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS--TAP 148
               E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL   +   A 
Sbjct: 81  NL--EPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYVVAD 132
Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----HYVVFTD 204
                + G     G  G G++ +         + +     +G RV  T+    H    TD
Sbjct: 133 RTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNG-RVQSTELCAGHLAGGTD 191
Query: 205 VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C GD+GG +V      + L+G+ S
Sbjct: 192 ---SCQGDAGGPLVCFEKDKYILQGVTS 216

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 40/233 (17%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKK--PYDKPV-DSDT 79
           G+   +G  PW   L     +N    CGGSL+  ++++TAAHC+ +   P D  + DSD 
Sbjct: 4   GRPAQKGTTPWIAMLSH---LNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 80  LV-----IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM 134
           L      I LGK H    SDE   Q+  VK   ++P ++ + +  D+AL++L      + 
Sbjct: 61  LSPSDFKIILGK-HWRLRSDE-NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNA 118
Query: 135 YVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC 194
           +V P+CL      P Q    EG  V    SG G  F      +   ++ I +       C
Sbjct: 119 FVMPICL---PEGPQQ----EGAMVIV--SGWGKQF---LQRFPETLMEIEIPIVDHSTC 166
Query: 195 DTKHYVVFTDVA-------------NVCNGDSGGGMVF--KIDSAWYLRGIVS 232
              +  +   V              + C GDSGG MV   +    WYL G VS
Sbjct: 167 QKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVS 219

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 246 KHYVVFTD-------VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTA 298
           KH+ + +D       VK   ++P ++ + +  D+AL++L      + +V P+CL      
Sbjct: 72  KHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICL---PEG 128
Query: 299 PLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
           P Q    EG    V GWG     R  E L    +PIV H  C  +      + T D   C
Sbjct: 129 PQQ----EGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRD-MIC 183
Query: 359 AGFRN 363
           AG + 
Sbjct: 184 AGEKE 188

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 30/222 (13%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G  +Q + +++      Q   +H       S Y  DIALL+L + V+Y+         
Sbjct: 58  YSGILNQSEIAEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYT--------- 106
Query: 143 DDSTAPLQLSAVEGTSVCNGD---SGGG---MVFKIDSAWYLRGIVSITVARDGLRVCDT 196
            DS  P+ L +    +V   D   +G G   +  KI +      I  +T      R    
Sbjct: 107 -DSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
Query: 197 K--HYVVFTDV----ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           K  H ++         + C GDSGG +  K +  W+L GI S
Sbjct: 166 KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 251 FTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           F  V+ + I+  +  +    DIALL+L + V+Y+   RP+ L       +  +     D 
Sbjct: 73  FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYT-----DC 127
Query: 311 TVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
            V GWGY +  D++   L+ A +P+V++++C     ++     + +  CAG+R 
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGYRE 178

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 106/249 (42%), Gaps = 41/249 (16%)
Query: 8   CGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
           CG   ++ K    +  G+   +G  PW   L     +N    CGGSL+  ++++TAAHC+
Sbjct: 143 CGLPKFSRKLMAQIFNGRPAQKGTTPWIAMLSH---LNGQPFCGGSLLGSSWIVTAAHCL 199
Query: 67  TKK--PYDKPV-DSDTLV-----IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL 118
            +   P D  + DSD L      I LGK H    SDE   Q+  VK   ++P ++ + + 
Sbjct: 200 HQSLDPEDPTLRDSDLLSPSDFKIILGK-HWRLRSDE-NEQHLGVKHTTLHPQYDPNTFE 257
Query: 119 GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL 178
            D+AL++L      + +V P+CL      P Q    EG  V    SG G  F      + 
Sbjct: 258 NDVALVELLESPVLNAFVMPICL---PEGPQQ----EGAMVIV--SGWGKQF---LQRFP 305
Query: 179 RGIVSITVARDGLRVCDTKHYVVFTDVA-------------NVCNGDSGGGMVF--KIDS 223
             ++ I +       C   +  +   V              + C GDSGG MV   +   
Sbjct: 306 ETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERG 365
Query: 224 AWYLRGIVS 232
            WYL G VS
Sbjct: 366 QWYLVGTVS 374

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 246 KHYVVFTD-------VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTA 298
           KH+ + +D       VK   ++P ++ + +  D+AL++L      + +V P+CL      
Sbjct: 227 KHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICL---PEG 283
Query: 299 PLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
           P Q    EG    V GWG     R  E L    +PIV H  C  +      + T D   C
Sbjct: 284 PQQ----EGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRD-MIC 338
Query: 359 AGFRN 363
           AG + 
Sbjct: 339 AGEKE 343

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 30/222 (13%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G  +Q + +++      Q   +H       S Y  DIALL+L + V+Y+         
Sbjct: 58  YSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYA--------- 106
Query: 143 DDSTAPLQLSAVEGTSVCNGD---SGGG---MVFKIDSAWYLRGIVSITVARDGLRVCDT 196
            DS  P+ L +    +V   D   +G G   +  KI +      I  +T      R    
Sbjct: 107 -DSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
Query: 197 K--HYVVFTDV----ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           K  H ++         + C GDSGG +  K +  W+L GI S
Sbjct: 166 KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 251 FTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           F  V+ + I+  +  +    DIALL+L + V+Y+   RP+ L       +  +     D 
Sbjct: 73  FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYT-----DC 127
Query: 311 TVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
            V GWGY +  D++   L+ A +P+V++++C     ++     + +  CAG+R 
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGYRE 178

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 31/224 (13%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G+    GQ+PW V L       +   CGGS+V+  +++TAAHC         V++  
Sbjct: 1   VVGGEDAKPGQFPWQVVLNG----KVDAFCGGSIVNEKWIVTAAHC---------VETGV 47
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 137
            +  +   H  +   E   Q + V R+  +  +N++   Y  DIALL+L   +  + YV 
Sbjct: 48  KITVVAGEHNIE-ETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVT 106
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
           P+C+ D     + L    G       SG G VF    +  +   + + +      +  TK
Sbjct: 107 PICIADKEYTNIFLKFGSGYV-----SGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK 161
Query: 198 HYVVFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            + ++ ++          + C GD+GG  V +++   +L GI+S
Sbjct: 162 -FTIYNNMFCAGFHEGGRDSCQGDAGGPHVTEVEGTSFLTGIIS 204

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 231 VSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVR 288
           V ITV      + +T+H     +V R+  +  +N++   Y  DIALL+L   +  + YV 
Sbjct: 47  VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVT 106
Query: 289 PVCLWDDSTAPLQLSAVEGRDGTVIGWG-YDENDRVSEELKMAIMPIVSHQQCLWSNPQF 347
           P+C+ D     + L       G V GWG      R +  L+   +P+V    CL S    
Sbjct: 107 PICIADKEYTNIFLKF---GSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS---- 159
Query: 348 FSQFT-SDETFCAGFR 362
            ++FT  +  FCAGF 
Sbjct: 160 -TKFTIYNNMFCAGFH 174

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 30/222 (13%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G  +Q + +++      Q   +H       S Y  DIALL+L + V+Y+         
Sbjct: 58  YSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYA--------- 106
Query: 143 DDSTAPLQLSAVEGTSVCNGD---SGGG---MVFKIDSAWYLRGIVSITVARDGLRVCDT 196
            DS  P+ L +    +V   D   +G G   +  KI +      I  +T      R    
Sbjct: 107 -DSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
Query: 197 K--HYVVFTDV----ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           K  H ++         + C GDSGG +  K +  W+L GI S
Sbjct: 166 KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 251 FTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           F  V+ + I+  +  +    DIALL+L + V+Y+   RP+ L       +  +     D 
Sbjct: 73  FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYT-----DC 127
Query: 311 TVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
            V GWGY +  D++   L+ A +P+V++++C     ++     + +  CAG+R 
Sbjct: 128 WVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGYRE 178

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V        N+    GG+L+   +++TAAH +  K ++   ++ +L +
Sbjct: 4   GQKAKMGNFPWQVF------TNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNA-SLDV 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPV 139
           +LG  +  +    G   N  ++RV ++P +    S N+ GDIALL+L + V     + P+
Sbjct: 57  FLGHTNVEELMKLG---NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 113
Query: 140 CLWDDST 146
           CL D+ T
Sbjct: 114 CLPDNDT 120

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 254 VKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           ++RV ++P +    S N+ GDIALL+L + V     + P+CL D+ T         G  G
Sbjct: 74  IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-----YDLGLMG 128
Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQCL-WSNPQFFSQFTSDETFCAG 360
            V G+G  E ++++ +L+   +P+ + Q C  W   +      S   FCAG
Sbjct: 129 YVSGFGVME-EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 178

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 30/222 (13%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G  +Q +  ++      Q   +H       S Y  DIALL+L + V+Y+         
Sbjct: 58  YSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYT--------- 106
Query: 143 DDSTAPLQLSAVEGTSVCNGD---SGGG---MVFKIDSAWYLRGIVSITVARDGLRVCDT 196
            DS  P+ L +    +V   D   +G G   +  KI +      I  +T      R    
Sbjct: 107 -DSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
Query: 197 K--HYVVFTDV----ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           K  H ++         + C GDSGG +  K +  W+L GI S
Sbjct: 166 KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L   + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+ L       
Sbjct: 62  LNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERN 121
Query: 300 LQLSAVEGRDGTVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
           +  +     D  V GWGY +  D++   L+ A +P+V++++C     ++     + +  C
Sbjct: 122 VIYT-----DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMIC 173
Query: 359 AGFRN 363
           AG+R 
Sbjct: 174 AGYRE 178

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 30/222 (13%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G  +Q +  ++      Q   +H       S Y  DIALL+L + V+Y+         
Sbjct: 58  YSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYT--------- 106
Query: 143 DDSTAPLQLSAVEGTSVCNGD---SGGG---MVFKIDSAWYLRGIVSITVARDGLRVCDT 196
            DS  P+ L +    +V   D   +G G   +  KI +      I  +T      R    
Sbjct: 107 -DSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
Query: 197 K--HYVVFTDV----ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           K  H ++         + C GDSGG +  K +  W+L GI S
Sbjct: 166 KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L   + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+ L       
Sbjct: 62  LNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRN 121
Query: 300 LQLSAVEGRDGTVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
           +  +     D  V GWGY +  D++   L+ A +P+V++++C     ++     + +  C
Sbjct: 122 VIYT-----DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMIC 173
Query: 359 AGFRN 363
           AG+R 
Sbjct: 174 AGYRE 178

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 33/247 (13%)
Query: 7   SCGTVVYNKAQPLVTYGQKTARGQWPWHVALY----RTEGINLSYVCGGSLVSVNYVITA 62
           +CG   Y++ Q  +  G        PW  A++    R+ G    ++CGG L+S  ++++A
Sbjct: 1   TCGLRQYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGER--FLCGGILISSCWILSA 58
Query: 63  AHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIA 122
           AHC  ++          L + LG+ ++    +E   Q  +V++  ++  F+   Y  DIA
Sbjct: 59  AHCFQER-----FPPHHLTVILGRTYRVVPGEE--EQKFEVEKYIVHKEFDDDTYDNDIA 111
Query: 123 LLQLSSD----VDYSMYVRPVCLWDDSTAPLQL---SAVEGTSVCNGDSGGGMVFKIDSA 175
           LLQL SD       S  VR VCL     A LQL   +  E +     ++      +    
Sbjct: 112 LLQLKSDSSRCAQESSVVRTVCL---PPADLQLPDWTECELSGYGKHEALSPFYSERLKE 168
Query: 176 WYLR----------GIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAW 225
            ++R           +++ TV  + L   DT+      ++ + C GDSGG +V   D   
Sbjct: 169 AHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRM 228
Query: 226 YLRGIVS 232
            L GI+S
Sbjct: 229 TLVGIIS 235

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 19/241 (7%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G +  R  WP  ++L    G + ++ CGG+L+  N+V+TAAHCV ++         T
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL--------T 52
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVR 137
             + +G+++ +Q  ++G  Q   V+++ ++P +N+ +     DIALL+L+  V  + YV+
Sbjct: 53  FRVVVGEHNLNQ--NDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
              L    T     S    T      + G +   +  A YL  +     +         K
Sbjct: 111 LGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQA-YLPTVDYAICSSSSYWGSTVK 169
Query: 198 HYVVFT---DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           + +V      V + C GDSGG +   ++  + + G+ S  V+R G  V  T+   VFT V
Sbjct: 170 NSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSF-VSRLGCNV--TRKPTVFTRV 226
Query: 255 K 255
Sbjct: 227 S 227

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 30/222 (13%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K      L +
Sbjct: 4   GTASVRGEWPWQVTLHTTSPTQ-RHLCGGSIIGNQWILTAAHCFYGVESPK-----ILRV 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G  +Q +  ++      Q   +H       S Y  DIALL+L + V+Y+         
Sbjct: 58  YSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESGY--DIALLKLETTVNYA--------- 106
Query: 143 DDSTAPLQLSAVEGTSVCNGD---SGGG---MVFKIDSAWYLRGIVSITVARDGLRVCDT 196
            DS  P+ L +    +V   D   +G G   +  KI +      I  +T      R    
Sbjct: 107 -DSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
Query: 197 K--HYVVFTDV----ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           K  H ++         + C GDSGG +  K +  W+L GI S
Sbjct: 166 KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITS 207

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L   + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+ L       
Sbjct: 62  LNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRN 121
Query: 300 LQLSAVEGRDGTVIGWGYDE-NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
           +  +     D  V GWGY +  D++   L+ A +P+V++++C     ++     + +  C
Sbjct: 122 VIYT-----DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMIC 173
Query: 359 AGFRN 363
           AG+R 
Sbjct: 174 AGYRE 178

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V        N+    GG+L+   +++TAAH +  K ++   ++ +L +
Sbjct: 93  GQKAKMGNFPWQVF------TNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNA-SLDV 145
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPV 139
           +LG  +  +    G   N  ++RV ++P +    S N+ GDIALL+L + V     + P+
Sbjct: 146 FLGHTNVEELMKLG---NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 202
Query: 140 CLWDDST 146
           CL D+ T
Sbjct: 203 CLPDNDT 209

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 254 VKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           ++RV ++P +    S N+ GDIALL+L + V     + P+CL D+ T         G  G
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-----YDLGLMG 217
Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQCL-WSNPQFFSQFTSDETFCAG 360
            V G+G  E ++++ +L+   +P+ + Q C  W   +      S   FCAG
Sbjct: 218 YVSGFGVME-EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 267

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V        N+    GG+L+   +++TAAH +  K ++   ++ +L +
Sbjct: 93  GQKAKMGNFPWQVF------TNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNA-SLDV 145
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPV 139
           +LG  +  +    G   N  ++RV ++P +    S N+ GDIALL+L + V     + P+
Sbjct: 146 FLGHTNVEELMKLG---NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 202
Query: 140 CLWDDST 146
           CL D+ T
Sbjct: 203 CLPDNDT 209

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 254 VKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           ++RV ++P +    S N+ GDIALL+L + V     + P+CL D+ T         G  G
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-----YDLGLMG 217
Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQCL-WSNPQFFSQFTSDETFCAG 360
            V G+G  E ++++ +L+   +P+ + Q C  W   +      S   FCAG
Sbjct: 218 YVSGFGVME-EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 267

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 28/221 (12%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +++ G+WPW V+L + +     ++CGGSL+   +V+TAAHC    P       D   I
Sbjct: 4   GTESSWGEWPWQVSL-QVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPL-----QDVWRI 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G       + +      Q+K + I+  +  S    DIAL++L + ++Y+ + +P+ L 
Sbjct: 58  YSGILELSDITKD--TPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISL- 114
Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH--YV 200
                    S  + +++       G  F  +       +  + +       C  ++  Y 
Sbjct: 115 --------PSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYK 166
Query: 201 VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           +   +          + C GDSGG +V K +  W L GI S
Sbjct: 167 ITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITS 207

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L + D      F+ +K + I+  +  S    DIAL++L + ++Y+ + +P+ L       
Sbjct: 62  LELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTS 121
Query: 300 LQLSAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
              +     +  V GWG+  E   +   L+   +P+V++++C     ++     +    C
Sbjct: 122 TIYT-----NCWVTGWGFSKEKGEIQNILQKVNIPLVTNEEC---QKRYQDYKITQRMVC 173
Query: 359 AGFRN 363
           AG++ 
Sbjct: 174 AGYKE 178

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 19/241 (7%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G +  R  WP  ++L    G + ++ CGG+L+  N+V+TAAHCV ++         T
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL--------T 52
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVR 137
             + +G+++ +Q  + G  Q   V+++ ++P +N+ +     DIALL+L+  V  + YV+
Sbjct: 53  FRVVVGEHNLNQ--NNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
              L    T     S    T      + G +   +  A YL  +     +         K
Sbjct: 111 LGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQA-YLPTVDYAICSSSSYWGSTVK 169
Query: 198 HYVVFT---DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           + +V      V + C GDSGG +   ++  + + G+ S  V+R G  V  T+   VFT V
Sbjct: 170 NSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSF-VSRLGCNV--TRKPTVFTRV 226
Query: 255 K 255
Sbjct: 227 S 227

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V        N+    GG+L+   +++TAAH +  K ++   ++ +L +
Sbjct: 161 GQKAKMGNFPWQVF------TNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNA-SLDV 213
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPV 139
           +LG  +  +    G   N  ++RV ++P +    S N+ GDIALL+L + V     + P+
Sbjct: 214 FLGHTNVEELMKLG---NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 270
Query: 140 CLWDDST 146
           CL D+ T
Sbjct: 271 CLPDNDT 277

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 254 VKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           ++RV ++P +    S N+ GDIALL+L + V     + P+CL D+ T         G  G
Sbjct: 231 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-----YDLGLMG 285
Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQCL-WSNPQFFSQFTSDETFCAG 360
            V G+G  E ++++ +L+   +P+ + Q C  W   +      S   FCAG
Sbjct: 286 YVSGFGVME-EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 335

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 19/241 (7%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G +  R  WP  ++L    G + ++ CGG+L+  N+V+TAAHCV ++         T
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL--------T 52
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVR 137
             + +G+++ +Q  + G  Q   V+++ ++P +N+ +     DIALL+L+  V  + YV+
Sbjct: 53  FRVVVGEHNLNQ--NNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110
Query: 138 PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
              L    T     S    T      + G +   +  A YL  +     +         K
Sbjct: 111 LGVLPRAGTILRNNSPCYITGWGLTRTNGQLAQTLQQA-YLPTVDYAICSSSSYWGSTVK 169
Query: 198 HYVVFT---DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           + +V      V + C GDSGG +   ++  + + G+ S  V+R G  V  T+   VFT V
Sbjct: 170 NSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSF-VSRLGCNV--TRKPTVFTRV 226
Query: 255 K 255
Sbjct: 227 S 227

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 19/215 (8%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+  A G+ PW   L   E       CGG++++  YV+TAAHC+ +        +    +
Sbjct: 4   GRDCAEGECPWQALLVNEENEGF---CGGTILNEFYVLTAAHCLHQ--------AKRFTV 52
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +G  +  Q  +EG     +V+    +  F    Y  DIA+L+L + + +   V P CL 
Sbjct: 53  RVGDRNTEQ--EEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLP 110
Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
           +   A   L   + T + +G        ++ S   +  +  +  +   L    T    +F
Sbjct: 111 EKDWAEATL-MTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLSSSFTITPNMF 169
Query: 203 -----TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                T   + C GDSGG  V +    +++ GIVS
Sbjct: 170 CAGYDTQPEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL----WDDSTAPLQLSAVEGR 308
           +V+    +  F    Y  DIA+L+L + + +   V P CL    W ++T   Q      +
Sbjct: 70  EVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQ------K 123
Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFT-SDETFCAGF 361
            G V G+G   E  R+S  LKM  +P V    C  S     S FT +   FCAG+
Sbjct: 124 TGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLS-----SSFTITPNMFCAGY 173

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 28/221 (12%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  ++ G+WPW V+L + +     ++CGGSL+   +V+TAAHC    P       D   I
Sbjct: 4   GTNSSWGEWPWQVSL-QVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQ-----DVWRI 57
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           Y G  +    + +      Q+K + I+  +  S    DIAL++L + ++Y+ + +P+ L 
Sbjct: 58  YSGILNLSDITKD--TPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISL- 114
Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH--YV 200
                    S  + +++       G  F  +       +  + +       C  ++  Y 
Sbjct: 115 --------PSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYK 166
Query: 201 VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           +   +          + C GDSGG +V K +  W L GI S
Sbjct: 167 ITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITS 207

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L + D      F+ +K + I+  +  S    DIAL++L + ++Y+ + +P+ L       
Sbjct: 62  LNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGDTS 121
Query: 300 LQLSAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
              +     +  V GWG+  E   +   L+   +P+V++++C     ++     +    C
Sbjct: 122 TIYT-----NCWVTGWGFSKEKGEIQNILQKVNIPLVTNEEC---QKRYQDYKITQRMVC 173
Query: 359 AGFRN 363
           AG++ 
Sbjct: 174 AGYKE 178

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 96/230 (41%), Gaps = 33/230 (14%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G+ T+ G+WPW V+L R +G +L   CGGSL+S ++V+TAAHC    P    V S  
Sbjct: 118 IVGGRDTSLGRWPWQVSL-RYDGAHL---CGGSLLSGDWVLTAAHCF---PERNRVLSRW 170
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHI-YPTFNSSNYLGDIALLQLSSDVDYSMYVRP 138
            V             + GVQ       ++ +   NS     DIAL+ LSS +  + Y++P
Sbjct: 171 RVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQP 230
Query: 139 VCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD--- 195
           VCL      P    A+    +C     G   +    A  L+      ++ D   VC+   
Sbjct: 231 VCL------PAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISND---VCNGAD 281
Query: 196 -------TKHYVVFTDVANV--CNGDSGGGMV----FKIDSAWYLRGIVS 232
                   K +        +  C GDSGG  V          W L GIVS
Sbjct: 282 FYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVS 331

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 264 NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG----YDE 319
           NS     DIAL+ LSS +  + Y++PVCL     A      V+G+  TV GWG    Y +
Sbjct: 205 NSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA-----LVDGKICTVTGWGNTQYYGQ 259
Query: 320 NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
              V +E   A +PI+S+  C  +   F+      + FCAG+
Sbjct: 260 QAGVLQE---ARVPIISNDVC--NGADFYGNQIKPKMFCAGY 296

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 97/230 (42%), Gaps = 33/230 (14%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G+ T+ G+WPW V+L R +G +L   CGGSL+S ++V+TAAHC    P    V S  
Sbjct: 118 IVGGRDTSLGRWPWQVSL-RYDGAHL---CGGSLLSGDWVLTAAHCF---PERNRVLSRW 170
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHI-YPTFNSSNYLGDIALLQLSSDVDYSMYVRP 138
            V             + GVQ       ++ +   NS     DIAL+ LSS +  + Y++P
Sbjct: 171 RVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQP 230
Query: 139 VCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
           VCL      P    A+    +C     G   +    A  L+      ++ D   VC+   
Sbjct: 231 VCL------PAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISND---VCNGAD 281
Query: 199 YV-------VF-----TDVANVCNGDSGGGMV----FKIDSAWYLRGIVS 232
           +        +F         + C GDSGG  V          W L GIVS
Sbjct: 282 FYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVS 331

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 264 NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG----YDE 319
           NS     DIAL+ LSS +  + Y++PVCL     A      V+G+  TV GWG    Y +
Sbjct: 205 NSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA-----LVDGKICTVTGWGNTQYYGQ 259
Query: 320 NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
              V +E   A +PI+S+  C  +   F+      + FCAG+
Sbjct: 260 QAGVLQE---ARVPIISNDVC--NGADFYGNQIKPKMFCAGY 296

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 36/233 (15%)
Query: 4   RDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLS-YVCGGSLVSVNYVITA 62
            +  CG  +  +    V+ G +      PW +AL R +    S ++CGG+++S  Y++TA
Sbjct: 107 ENFDCGNFLSQR----VSNGYEVKLSSRPW-MALLRYQQFGESRFLCGGAMISERYILTA 161
Query: 63  AHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDE-------------GGVQNKQVKRVHIY 109
           AHCV        + +D   I LG   +H+ S E               V N  +++  I+
Sbjct: 162 AHCVHG------LQNDLYEIRLG---EHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIH 212
Query: 110 PTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL-----WDDSTAPLQLSAVEGTSVCNGDS 164
             +++ + + DIALL+L+  V +  +++P+CL       +    +    V G       S
Sbjct: 213 EKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGS 272
Query: 165 GGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGM 217
              ++ + +     R   S    R    V  ++  V   D+ + C GDSGG +
Sbjct: 273 SSDVLLQANVPLQPRSACSQAYRR---AVPLSQLCVGGGDLQDSCKGDSGGPL 322

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
           VV   +++  I+  +++ + + DIALL+L+  V +  +++P+CL    T  L+  A +  
Sbjct: 201 VVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICL--PITDELKEKAEQIS 258
Query: 309 DGTVIGWGYDENDRVSEELKMAIMPIVSHQQC 340
              V GWG  EN   S+ L  A +P+     C
Sbjct: 259 TYFVTGWGTTENGSSSDVLLQANVPLQPRSAC 290

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 94/227 (41%), Gaps = 27/227 (11%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G+ T+ G+WPW V+L R +G +L   CGGSL+S ++V+TAAHC    P    V S  
Sbjct: 1   IVGGRDTSLGRWPWQVSL-RYDGAHL---CGGSLLSGDWVLTAAHCF---PERNRVLSRW 53
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHI-YPTFNSSNYLGDIALLQLSSDVDYSMYVRP 138
            V             + GVQ       ++ +   NS     DIAL+ LSS +  + Y++P
Sbjct: 54  RVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQP 113
Query: 139 VCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD--- 195
           VCL      P    A+    +C     G   +    A  L+      ++ D     D   
Sbjct: 114 VCL------PAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYG 167
Query: 196 ----TKHYVVFTDVANV--CNGDSGGGMV----FKIDSAWYLRGIVS 232
                K +        +  C GDSGG  V          W L GIVS
Sbjct: 168 NQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVS 214

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 264 NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDR 322
           NS     DIAL+ LSS +  + Y++PVCL     A      V+G+  TV GWG  +   +
Sbjct: 88  NSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA-----LVDGKICTVTGWGNTQYYGQ 142
Query: 323 VSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            +  L+ A +PI+S+  C  +   F+      + FCAG+
Sbjct: 143 QAGVLQEARVPIISNDVC--NGADFYGNQIKPKMFCAGY 179

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ +CL      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC      D P   D  +
Sbjct: 27  GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI----DYPKKED-YI 81
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 82  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 139
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ +CL      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 140 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 191
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 192 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 240

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 33/222 (14%)
Query: 32  PWHVALY----RTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKY 87
           PW  A++    R+ G    ++CGG L+S  ++++AAHC  ++          L + LG+ 
Sbjct: 13  PWQAAIFAKHRRSPGER--FLCGGILISSCWILSAAHCFQER-----FPPHHLTVILGRT 65
Query: 88  HQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSD----VDYSMYVRPVCLWD 143
           ++    +E   Q  +V++  ++  F+   Y  DIALLQL SD       S  VR VCL  
Sbjct: 66  YRVVPGEE--EQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCL-- 121
Query: 144 DSTAPLQL---SAVEGTSVCNGDSGGGMVFKIDSAWYLR----------GIVSITVARDG 190
              A LQL   +  E +     ++      +     ++R           +++ TV  + 
Sbjct: 122 -PPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNM 180
Query: 191 LRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           L   DT+      ++ + C GDSGG +V   D    L GI+S
Sbjct: 181 LCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIIS 222

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ +CL      P   ++ E T       G G     D   Y   +    V     R C 
Sbjct: 117 IQTICLPSMYNDPQFGTSCEIT-------GFGKEASTDYL-YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDACQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 23  GQKTARGQWPWHVAL--YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTL 80
           GQ  A G WPW V+L  +        +VCGGSL++  +++TAAHC   K   K V +D  
Sbjct: 4   GQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIK---KKV-TDWR 59
Query: 81  VIYLGKYHQHQFSD--EGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRP 138
           +I+  K  +   +   +  +Q + V+++ I+  +++S+   DIAL++++  V    ++ P
Sbjct: 60  LIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGP 119
Query: 139 VCL 141
            CL
Sbjct: 120 GCL 122

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ +CL      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ +CL      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ +CL      P   ++ E T       G G     D   Y   +    V     R C 
Sbjct: 117 IQTICLPSMYNDPQFGTSCEIT-------GFGKEASTDYL-YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ +CL      P   ++ E T       G G     D   Y   +    V     R C 
Sbjct: 117 IQTICLPSMYNDPQFGTSCEIT-------GFGKEASTDYL-YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 37  LYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEG 96
           L++T G   S++CGG LV  ++V+TAAHC+            ++ + LG ++  +   E 
Sbjct: 19  LFKTSG--KSHICGGFLVREDFVLTAAHCL----------GSSINVTLGAHNIME--RER 64
Query: 97  GVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 156
             Q   V+R   +P +N      DI LL+L+   D +  V P+ L      P  L+ V+ 
Sbjct: 65  TQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINL------PRSLAEVKP 118
Query: 157 TSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV--------ANV 208
             +C+    G +   + S   L+  V + V  +   +   K+Y+ FT +         N 
Sbjct: 119 GMMCSVAGWGRLGVNMPSTDKLQE-VDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNS 177
Query: 209 CNGDSGGGMV 218
            +GDSGG +V
Sbjct: 178 FSGDSGGPLV 187

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 97/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ +CL      P   ++ E T      S   +        Y   +    V     R C 
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEQSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G    +   PW VA+Y  +     ++CGG L+  N+V+TAAHC            D 
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQK----EHICGGVLLDRNWVLTAAHCYV----------DQ 46
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSS 128
             ++LGK     F +E   Q++ V +   +P FN S           ++  D+ LL+LS 
Sbjct: 47  YEVWLGK--NKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSK 104
Query: 129 DVDYSMYVRPVCLWDDSTAP 148
             D +  V+P+ L      P
Sbjct: 105 PADITDVVKPIALPTKEPKP 124

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 36/220 (16%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           + +G    +   P+  ALY +  +    +CGG L+   +V+TAAHC  KKP         
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHL----LCGGVLIHPLWVLTAAHC--KKP--------N 46
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
           L ++LGK++  Q   E   +   V R  I+P ++++++  DI LL+L+     S  ++P+
Sbjct: 47  LQVFLGKHNLRQ--RESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 140 CLWDDSTAPLQLSAVEGTSVCN----GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
                   PL+      T+ C+    G +  G         Y+  +VS            
Sbjct: 105 --------PLERDCSANTTSCHILGWGKTADGDFPDTIQCAYIH-LVSREECEHAYPGQI 155
Query: 196 TKHYVVFTDV---ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           T++ +   D     + C GDSGG +V       +LRG+VS
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLV----CGDHLRGLVS 191

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 23/232 (9%)
Query: 20  VTYGQKTARGQWPWHVAL-YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSD 78
           +  G  T   ++PW   + Y+       + CGGSL++  Y++TAAHCV  +     V   
Sbjct: 23  ILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLR--VVGA 80
Query: 79  TLVIYLGKYHQHQFSDEGG-----VQNKQVKRVHIYPTFNSSNYLG-------DIALLQL 126
              + LG+++     D  G     V +K +  + I  T    +Y+        DIAL++L
Sbjct: 81  LNKVRLGEWNTATDPDCYGAVRVCVPDKPID-LGIEETIQHPDYVDGSKDRYHDIALIRL 139
Query: 127 SSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           +  V+++ Y+RPVCL       +Q+     T V  G +  G    I     +  + +   
Sbjct: 140 NRQVEFTNYIRPVCL-PQPNEEVQVGQ-RLTVVGWGRTETGQYSTIKQKLAVPVVHAEQC 197
Query: 187 ARD----GLRVCDTKHYVVFTDVANVCNGDSGGGMVF-KIDSAWYLRGIVSI 233
           A+     G+RV  ++         + C GDSGG ++  + +  ++L G+VS 
Sbjct: 198 AKTFGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGLVSF 249

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE-GRDGTVIGWGYDENDRVSEELKM 329
           DIAL++L+  V+++ Y+RPVCL      P     V+ G+  TV+GWG  E  + S   + 
Sbjct: 133 DIALIRLNRQVEFTNYIRPVCL------PQPNEEVQVGQRLTVVGWGRTETGQYSTIKQK 186
Query: 330 AIMPIVSHQQC 340
             +P+V  +QC
Sbjct: 187 LAVPVVHAEQC 197

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 47/235 (20%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G+      WPW V+L         + CGG+LV  ++V+TAAHC++         S T
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS--------SRT 52
Query: 80  LVIYLGKYHQHQFS-DEGGVQNKQVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYV 136
             + LG+   H  S +E G    +V ++ ++  +NS+      DIALL+L+S V  +  +
Sbjct: 53  YRVVLGR---HSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKI 109
Query: 137 RPVCLWDDSTAPLQLSAVEGTSVC----------NGDSGG----GMVFKIDSAWYLRGIV 182
           +  CL      P   + +    VC          NG S      G +  +D A       
Sbjct: 110 QLGCL------PAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYA------- 156
Query: 183 SITVARDGLRVCDTKHYVVFT---DVANVCNGDSGGGMVFK-IDSAWYLRGIVSI 233
             T ++ G      K  ++      + + CNGDSGG +  +  +  W + GIVS 
Sbjct: 157 --TCSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSF 209

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 29  GQWPWHVALYRTEGINLS----YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYL 84
           G++PW VA+ +   I  S     VCGGSL++ + V+T AHCV    Y   +D+  + I  
Sbjct: 140 GEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNS--YQSNLDA--IKIRA 195
Query: 85  GKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDD 144
           G++      +    Q +++++V I+  FN    + D+ALL L   +  +  +  +CL   
Sbjct: 196 GEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQ 255
Query: 145 S 145
           S
Sbjct: 256 S 256

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC      D P   D  +
Sbjct: 19  GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI----DYPKKED-YI 73
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 74  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 131
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ + L      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 132 IQTISLPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 183
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 184 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 232

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ + L      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ + L      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 117 IQTISLPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ + L      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 117 IQTISLPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ + L      P   ++ E T      S   +        Y   +    V     R C 
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ + L      P   ++ E T     +S   +        Y   +    V     R C 
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKENSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ + L      P   ++ E T      S   +        Y   +    V     R C 
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GDSGG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 217

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 29/222 (13%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSY-VCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G     G++P+ ++   T  I  S+  CG S+ + NY ITA HCV    Y+ P     L 
Sbjct: 4   GTDATLGEFPYQLSFQETF-IGFSFHFCGASIYNENYAITAGHCVYGDDYENP---SGLQ 59
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
           I  G+       +EG  Q   V ++ ++  F+ +    DI+LL+LS  + ++  V P+ L
Sbjct: 60  IVAGELDMS--VNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIAL 117
Query: 142 WDDSTAPLQLSAVEGTSVCNG---DSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
                 P Q     G  +  G    S GG    +     L+ +    V+ +  R      
Sbjct: 118 ------PEQGHTATGDVIVTGWGTTSEGGNTPDV-----LQKVTVPLVSDEDCRADYGAD 166
Query: 199 YVVFTDV--------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            ++ + +         + C GDSGG +      + YL GIVS
Sbjct: 167 EILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVS 208

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 33/183 (18%)
Query: 49  CGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHI 108
           CGG LV  ++V+TAAHC             ++ + LG ++  +   E   Q   VKR   
Sbjct: 29  CGGILVRKDFVLTAAHC----------QGSSINVTLGAHNIKE--QERTQQFIPVKRPIP 76
Query: 109 YPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM 168
           +P +N  N+  DI LLQL     ++  VRP+ L      P   + V+   +C+  +G G 
Sbjct: 77  HPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRL------PSSKAQVKPGQLCS-VAGWGY 129
Query: 169 VFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC-----------NGDSGGGM 217
           V     A  L+ ++ +TV +D    C+   +  ++    +C            GDSGG +
Sbjct: 130 VSMSTLATTLQEVL-LTVQKDCQ--CERLFHGNYSRATEICVGDPKKTQTGFKGDSGGPL 186
Query: 218 VFK 220
           V K
Sbjct: 187 VCK 189

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 196 TKHYVVFTDVANVCNGDSGGGMVFKID---SAWYLRGIVSITVARDGLRVCDTKHYVVFT 252
           ++ Y+ F       +    GG++ + D   +A + +G  SI V      + + +    F 
Sbjct: 11  SRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHCQG-SSINVTLGAHNIKEQERTQQFI 69
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
            VKR   +P +N  N+  DI LLQL     ++  VRP+ L   S A ++     G+  +V
Sbjct: 70  PVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRL-PSSKAQVK----PGQLCSV 124
Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
            GWGY     ++  L+  ++ +    QC      F   ++     C G
Sbjct: 125 AGWGYVSMSTLATTLQEVLLTVQKDCQC---ERLFHGNYSRATEICVG 169

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 34/229 (14%)
Query: 23  GQKTARGQWPWHVALYRT-EGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+YR   G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
           ++ + L      P   ++ E T      S   +        Y   +    V     R C 
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQSTDYL--------YPEQLKMTVVKLISHRECQ 168
Query: 196 TKHYV---VFTDV---------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             HY    V T +          + C GD+GG +V  +     L GIVS
Sbjct: 169 QPHYYGSEVTTKMLCAADPQWKTDSCQGDAGGPLVCSLQGRMTLTGIVS 217

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 84/217 (38%), Gaps = 74/217 (34%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVD---SDT 79
           G +   G+WPW  +L      + S+ CG +L++  ++++AAHC T   Y  P     S  
Sbjct: 4   GTEVEEGEWPWQASLQ----WDGSHRCGATLINATWLVSAAHCFTT--YKNPARWTASFG 57
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
           + I   K              + ++R+ ++  +   ++  DI+L +LSS V Y+  V  V
Sbjct: 58  VTIKPSK------------MKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRV 105
Query: 140 CL-------------------------------------------------WDDSTAPLQ 150
           CL                                                 ++D+  P  
Sbjct: 106 CLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRM 165
Query: 151 LSA--VEG-TSVCNGDSGGGMVFK-IDSAWYLRGIVS 183
           L A  +EG T  C GDSGG +V       WYL GIVS
Sbjct: 166 LCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVS 202

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 33/183 (18%)
Query: 49  CGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHI 108
           CGG LV  ++V+TAAHC             ++ + LG ++  +   E   Q   VKR   
Sbjct: 29  CGGILVRKDFVLTAAHC----------QGSSINVTLGAHNIKE--QERTQQFIPVKRPIP 76
Query: 109 YPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM 168
           +P +N  N+  +I LLQL     ++  VRP+ L      P   + V+   +C+  +G G 
Sbjct: 77  HPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRL------PSSKAQVKPGQLCS-VAGWGY 129
Query: 169 VFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC-----------NGDSGGGM 217
           V     A  L+ ++ +TV +D    C+   +  ++    +C            GDSGG +
Sbjct: 130 VSMSTLATTLQEVL-LTVQKDCQ--CERLFHGNYSRATEICVGDPKKTQTGFKGDSGGPL 186
Query: 218 VFK 220
           V K
Sbjct: 187 VCK 189

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 196 TKHYVVFTDVANVCNGDSGGGMVFKID---SAWYLRGIVSITVARDGLRVCDTKHYVVFT 252
           ++ Y+ F       +    GG++ + D   +A + +G  SI V      + + +    F 
Sbjct: 11  SRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHCQG-SSINVTLGAHNIKEQERTQQFI 69
Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
            VKR   +P +N  N+  +I LLQL     ++  VRP+ L   S A ++     G+  +V
Sbjct: 70  PVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRL-PSSKAQVK----PGQLCSV 124
Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
            GWGY     ++  L+  ++ +    QC      F   ++     C G
Sbjct: 125 AGWGYVSMSTLATTLQEVLLTVQKDCQC---ERLFHGNYSRATEICVG 169

>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin Length = 70

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
          +  G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + 
Sbjct: 1  IVEGSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTEND 58
Query: 80 LVIYLGKYHQ 89
          L++ +GK+ +
Sbjct: 59 LLVRIGKHSR 68

>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-I1 (Smipp-S-I1) Length = 228

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 29/197 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV-TKKPYDKPVDSDTLV 81
           G+KT   Q PW VA+ RT     S  CGG+++S  +V+TAAHCV  +KP       +T+V
Sbjct: 3   GEKTDIKQVPWTVAV-RTYPGEESLTCGGAILSQWFVLTAAHCVFDQKP-------ETIV 54
Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL-GDIALLQLSSDVDYSMYVRPVC 140
           I   +Y      ++ G  +  V   H+Y +F     +  DIA+L+LS         RP+ 
Sbjct: 55  I---QYESTNLWEDPGKSDPYVS--HVYLSFYRQETMENDIAILELS---------RPLK 100
Query: 141 LWDDSTAPLQLSAVEGTSVCNGD---SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
           L    + P +L  +E       D   SG G    +D   +      +TV    L  C TK
Sbjct: 101 LDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVV--DLDECRTK 158
Query: 198 HYVVFTDVANVCNGDSG 214
           +  +F  +   C    G
Sbjct: 159 YGPIFLSLQVFCAQKVG 175

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 50/224 (22%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   ARG  PW VAL     ++    CGG LV+  +V+TAAHC                 
Sbjct: 4   GAPCARGSHPWQVALLSGNQLH----CGGVLVNERWVLTAAHC----------------- 42
Query: 83  YLGKYHQHQFSDEGG---VQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            + +Y  H  SD  G    Q  +  +   +P +++  ++ D+ L++L+S    S  V+ V
Sbjct: 43  KMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKV 102
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
            L      P     V         SG G     D   +   ++ + V     + C TK Y
Sbjct: 103 RLPSRCEPPGTTCTV---------SGWGTTTSPDVT-FPSDLMCVDVKLISPQDC-TKVY 151
Query: 200 VVFTDVA-----------NVCNGDSGGGMVFKIDSAWYLRGIVS 232
               + +           N CNGDSGG +V +      L+G+VS
Sbjct: 152 KDLLENSMLCAGIPDSKKNACNGDSGGPLVCR----GTLQGLVS 191

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 29  GQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
           G+ PW   L   E       CGG+++S  Y++TAAHC+ +        +    + +G  +
Sbjct: 10  GEVPWQALLINEENEGF---CGGTILSEFYILTAAHCLYQ--------AKRFKVRVGDRN 58
Query: 89  QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P  L    TAP
Sbjct: 59  TEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASL---PTAP 113

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 49  CGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHI 108
           CGG L+  ++V+TAAHC             ++ + LG ++  +   E   Q   VKR   
Sbjct: 29  CGGFLIQDDFVLTAAHCW----------GSSINVTLGAHNIKE--QEPTQQFIPVKRPIP 76
Query: 109 YPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM 168
           +P +N  N+  DI LLQL      +  V+P+ L      P   + V+    C+  +G G 
Sbjct: 77  HPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRL------PSNKAQVKPGQTCS-VAGWGQ 129
Query: 169 VFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC-----------NGDSGGGM 217
              +    +    V +TV  D     D +HY  +     +C            GDSGG +
Sbjct: 130 TAPLGKHSHTLQEVKMTVQEDRKCESDLRHY--YDSTIELCVGDPEIKKTSFKGDSGGPL 187
Query: 218 V 218
           V
Sbjct: 188 V 188

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 49  CGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHI 108
           CGG L+  ++V+TAAHC             ++ + LG ++  +   E   Q   VKR   
Sbjct: 29  CGGFLIRDDFVLTAAHCW----------GSSINVTLGAHNIKE--QEPTQQFIPVKRPIP 76
Query: 109 YPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM 168
           +P +N  N+  DI LLQL      +  V+P+ L      P   + V+    C+  +G G 
Sbjct: 77  HPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRL------PSNKAQVKPGQTCS-VAGWGQ 129
Query: 169 VFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC-----------NGDSGGGM 217
              +    +    V +TV  D     D +HY  +     +C            GDSGG +
Sbjct: 130 TAPLGKHSHTLQEVKMTVQEDRKCESDLRHY--YDSTIELCVGDPEIKKTSFKGDSGGPL 187
Query: 218 V 218
           V
Sbjct: 188 V 188

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 50/224 (22%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   ARG  PW VAL     ++    CGG LV+  +V+TAAHC                 
Sbjct: 4   GAPCARGSHPWQVALLSGNQLH----CGGVLVNERWVLTAAHC----------------- 42
Query: 83  YLGKYHQHQFSDEGG---VQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            + +Y  H  SD  G    Q  +  +   +P +++  ++ D+ L++L+S    S  V+ V
Sbjct: 43  KMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKV 102
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS----ITVARDGLR--- 192
            L      P     V G       +   + F  D       ++S      V +D L    
Sbjct: 103 RLPSRCEPPGTTCTVSGWGT---TTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSM 159
Query: 193 ----VCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               + D+K         N CNGDSGG +V +      L+G+VS
Sbjct: 160 LCAGIPDSK--------KNACNGDSGGPLVCR----GTLQGLVS 191

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 45/262 (17%)
Query: 13  YNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYD 72
           +++    V  G+      W W V+L   +     + CGGSL++ ++V+TA HC++     
Sbjct: 5   FSRPSSRVVNGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST---- 60
Query: 73  KPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL--GDIALLQLSSDV 130
               S T  + LG+Y +        V       + ++P +NS+      DIAL++LS   
Sbjct: 61  ----SRTYQVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSA 116
Query: 131 DYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDG 190
                V+   L      P     +   + C   SG G +       Y  G +   +    
Sbjct: 117 QLGDKVQLANL------PPAGDILPNEAPCY-ISGWGRL-------YTGGPLPDKLQEAL 162
Query: 191 LRVCDTKHYVVFT---------------DVANVCNGDSGGGM-VFKIDSAWYLRGIVSIT 234
           L V D +H   +                D  + C+GDSGG +     D +W + G+ S  
Sbjct: 163 LPVVDYEHCSQYDWWGITVKKTMVCAGGDTRSGCDGDSGGPLNCPAADGSWQVHGVTSFV 222
Query: 235 VARDGLRVCDT-KHYVVFTDVK 255
            A      C+T K   VFT V 
Sbjct: 223 SAFG----CNTIKKPTVFTRVS 240

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCD-TKHYVVFTDVKRVHIYPTFNSSNYL 269
           GG +V K   + +A   + ++ + +    +RV + T+ Y+  + V R   +P ++S N  
Sbjct: 26  GGSLVSKDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQYISSSSVIR---HPNYSSYNIN 82
Query: 270 GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRV-SEELK 328
            DI L++L+     + YV  V L  +  A   +        TV GWG   +     ++L+
Sbjct: 83  NDIMLIKLTKPATLNQYVHAVALPTECAADATMC-------TVSGWGNTMSSVADGDKLQ 135
Query: 329 MAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
              +PI+SH  C  S P   +Q      FCAG+
Sbjct: 136 CLSLPILSHADCANSYPGMITQ----SMFCAGY 164

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +   G +P+   L  T        CGGSL+   +++TAAHCV         D+ ++V+
Sbjct: 4   GYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH--------DAVSVVV 55
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
           YLG   Q++     G      +R+  +  FN   YL D+AL+++   V+Y+  ++P+ L
Sbjct: 56  YLGSAVQYE-----GEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRL 108

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 37/233 (15%)
Query: 17  QPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVD 76
           +P +  G  +  G  PW  A+Y    I  S+ C GSLV   +V++AAHC +  P      
Sbjct: 33  RPRIIGGSSSLPGSHPWLAAIY----IGDSF-CAGSLVHTCWVVSAAHCFSHSP-----P 82
Query: 77  SDTLVIYLGKYHQHQFSDEGGVQNKQVKR---VHIYPTFNSSNYLGDIALLQLSSDVD-- 131
            D++ + LG++  ++ +D    Q   +++     +Y  FN S++  D+ L++L    D  
Sbjct: 83  RDSVSVVLGQHFFNRTTDV--TQTFGIEKYIPYTLYSVFNPSDH--DLVLIRLKKKGDRC 138
Query: 132 --YSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS-AWYLRGIVSITVAR 188
              S +V+P+CL      P   S       C     G +   +   +  LR  +   VA 
Sbjct: 139 ATRSQFVQPICL------PEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVAD 192
Query: 189 D--------GLRVCDTKHYVVFTDV-ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                    G  +        + D  ++ C GDSGG +  + +   YL GI+S
Sbjct: 193 HKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIIS 245

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 23  HFCGGSLVNENWVVSAAHCYKSR----------VAVRLGEHNIKV--TEGSEQFISSSRV 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 71  IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVAL-PSSCAP 111

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V++ +    ++V  T+    F    RV  +P ++S N   
Sbjct: 26  GGSLVNENWVVSAAHCYKSRVAVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 83
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRV-SEELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +     ++L+ 
Sbjct: 84  DIMLIKLSKPATLNTYVQPVAL-PSSCAP------AGTMCTVSGWGNTMSSTADGDKLQC 136
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 137 LNIPILSYSDCNNSYPGMI----TNAMFCAGY 164

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           + +G    +   P+  ALY +  +    +CGG L+   +V+TAAHC  KKP         
Sbjct: 2   LVHGGPCDKTSHPYQAALYTSGHL----LCGGVLIHPLWVLTAAHC--KKP--------N 47
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
           L ++LGK++  Q       +   V R  I+P ++++++  DI LL+L+     S  ++P+
Sbjct: 48  LQVFLGKHNLRQQESS--QEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 105
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
            L  D +A      + G     G +  G         Y+  +VS            T++ 
Sbjct: 106 PLERDCSAQTTSCHILGW----GKTADGDFPDTIQCAYIH-LVSREECEHAYPGQITQNM 160
Query: 200 VVFTDV---ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           +   D     + C GDSGG +V       +LRG+VS
Sbjct: 161 LCAGDEKYGKDSCQGDSGGPLV----CGDHLRGLVS 192

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           V R  I+P ++++++  DI LL+L+     S  ++P+ L  D +A  Q ++       ++
Sbjct: 69  VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSA--QTTSCH-----IL 121
Query: 314 GWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
           GWG   +    + ++ A + +VS ++C  + P   +Q       CAG
Sbjct: 122 GWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQ----NMLCAG 164

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 97/252 (38%), Gaps = 45/252 (17%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+      W W V+L   +     + CGGSL++ ++V+TA HC++         S T  +
Sbjct: 2   GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST--------SRTYQV 53
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVC 140
            LG+Y +        V       + ++P +NS+      DIAL++LS        V+   
Sbjct: 54  VLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLAN 113
Query: 141 LWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH-- 198
           L      P     +   + C   SG G +       Y  G +   + +  L   D +H  
Sbjct: 114 L------PPAGDILPNEAPCY-ISGWGRL-------YTGGPLPDKLQQALLPTVDYEHCS 159
Query: 199 -------------YVVFTDVANVCNGDSGGGM-VFKIDSAWYLRGIVSITVARDGLRVCD 244
                             D  + CNGDSGG +     D +W + G+ S   A      C+
Sbjct: 160 QWDWWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFG----CN 215
Query: 245 T-KHYVVFTDVK 255
           T K   VFT V 
Sbjct: 216 TIKKPTVFTRVS 227

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 34  HVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFS 93
           ++A  +  G   S+ CGG+L+  ++V+TAAHC+   P         + + LG ++    +
Sbjct: 14  YMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIP------QRLVNVVLGAHNVR--T 65
Query: 94  DEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 153
            E   Q+  V +V +   +++ N L DI L+QLSS  + S  V  V L      P Q   
Sbjct: 66  QEPTQQHFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQL------PQQDQP 118
Query: 154 VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDS 213
           V   + C    G G V   D    +   +++TV     R  +   +V     A +C GDS
Sbjct: 119 VPHGTQCLA-MGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRK-AGICFGDS 176
Query: 214 GGGMV 218
           GG ++
Sbjct: 177 GGPLI 181

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 23  HFCGGSLVNENWVVSAAHCYKSR----------VEVRLGEHNIKV--TEGSEQFISSSRV 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 71  IRHPNYSSYNIDNDIMLIKLSKSATLNTYVQPVAL-PSSCAP 111

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V + +    ++V  T+    F    RV  +P ++S N   
Sbjct: 26  GGSLVNENWVVSAAHCYKSRVEVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 83
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSE-ELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +    + +L+ 
Sbjct: 84  DIMLIKLSKSATLNTYVQPVAL-PSSCAP------AGTMCTVSGWGNTMSSTADKNKLQC 136
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 137 LNIPILSYSDCNNSYPGMI----TNAMFCAGY 164

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 23  HFCGGSLVNENWVVSAAHCYKSR----------VEVRLGEHNIK--VTEGSEQFISSSRV 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 71  IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVAL-PSSCAP 111

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V + +    ++V  T+    F    RV  +P ++S N   
Sbjct: 26  GGSLVNENWVVSAAHCYKSRVEVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 83
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSE-ELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +    + +L+ 
Sbjct: 84  DIMLIKLSKPATLNTYVQPVAL-PSSCAP------AGTMCTVSGWGNTMSSTADKNKLQC 136
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 137 LNIPILSYSDCNNSYPGMI----TNAMFCAGY 164

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 23  HFCGGSLVNENWVVSAAHCYKTR----------VEVRLGEHNIK--VTEGSEQFISSSRV 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 71  IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVAL-PSSCAP 111

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V + +    ++V  T+    F    RV  +P ++S N   
Sbjct: 26  GGSLVNENWVVSAAHCYKTRVEVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 83
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSE-ELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +    + +L+ 
Sbjct: 84  DIMLIKLSKPATLNTYVQPVAL-PSSCAP------AGTMCTVSGWGNTMSSTADKNKLQC 136
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 137 LNIPILSYSDCNNSYPGMI----TNAMFCAGY 164

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 38  HFCGGSLVNENWVVSAAHCYKSR----------VEVRLGEHNIKV--TEGSEQFISSSRV 85
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 86  IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVAL-PTSCAP 126

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V + +    ++V  T+    F    RV  +P ++S N   
Sbjct: 41  GGSLVNENWVVSAAHCYKSRVEVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 98
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRV-SEELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +    S +L+ 
Sbjct: 99  DIMLIKLSKPATLNTYVQPVAL-PTSCAP------AGTMCTVSGWGNTMSSTADSNKLQC 151
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 152 LNIPILSYSDCNNSYPGMI----TNAMFCAGY 179

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 43  HFCGGSLVNENWVVSAAHCYKSR----------VEVRLGEHNIKV--TEGSEQFISSSRV 90
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 91  IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVAL-PTSCAP 131

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V + +    ++V  T+    F    RV  +P ++S N   
Sbjct: 46  GGSLVNENWVVSAAHCYKSRVEVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 103
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRV-SEELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +    S +L+ 
Sbjct: 104 DIMLIKLSKPATLNTYVQPVAL-PTSCAP------AGTMCTVSGWGNTMSSTADSNKLQC 156
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 157 LNIPILSYSDCNNSYPGMI----TNAMFCAGY 184

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 36/220 (16%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           + +G    +   P+  ALY +  +    +CGG L+   +V+TAAHC  KKP         
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHL----LCGGVLIHPLWVLTAAHC--KKP--------N 46
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
           L ++LGK++  Q       +   V R  I+P ++++++  DI LL+L+     S  ++P+
Sbjct: 47  LQVFLGKHNLGQQESS--QEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 140 CLWDDSTAPLQLSAVEGTSVCN----GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
                   PL+      T+ C+    G +  G         Y+  +VS            
Sbjct: 105 --------PLERDCSAQTTSCHILGWGKTADGDFPDTIQCAYIH-LVSREECEHAYPGQI 155
Query: 196 TKHYVVFTDV---ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           T++ +   D     + C GDSGG +V       +LRG+VS
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLV----CGDHLRGLVS 191

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           V R  I+P ++++++  DI LL+L+     S  ++P+ L  D +A  Q ++       ++
Sbjct: 68  VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSA--QTTSCH-----IL 120
Query: 314 GWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
           GWG   +    + ++ A + +VS ++C  + P   +Q       CAG
Sbjct: 121 GWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQ----NMLCAG 163

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 23  HFCGGSLVNENWVVSAAHCYKSR----------VEVRLGEHNIKV--TEGSEQFISSSRV 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 71  IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVAL-PTSCAP 111

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V + +    ++V  T+    F    RV  +P ++S N   
Sbjct: 26  GGSLVNENWVVSAAHCYKSRVEVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 83
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRV-SEELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +    S +L+ 
Sbjct: 84  DIMLIKLSKPATLNTYVQPVAL-PTSCAP------AGTMCTVSGWGNTMSSTADSNKLQC 136
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 137 LNIPILSYSDCNNSYPGMI----TNAMFCAGY 164

>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin Length = 81

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
           +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L A  G  G V
Sbjct: 8   LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA--GYKGRV 65
Query: 313 IGWG 316
            GWG
Sbjct: 66  TGWG 69

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 23  HFCGGSLVNENWVVSAAHCYKSR----------VEVRLGEHNIKV--TEGSEQFISSSRV 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 71  IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVAL-PTSCAP 111

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V + +    ++V  T+    F    RV  +P ++S N   
Sbjct: 26  GGSLVNENWVVSAAHCYKSRVEVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 83
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRV-SEELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +    S++L+ 
Sbjct: 84  DIMLIKLSKPATLNTYVQPVAL-PTSCAP------AGTMCTVSGWGNTMSSTADSDKLQC 136
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 137 LNIPILSYSDCNDSYPGMI----TNAMFCAGY 164

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSLV+ N+V++AAHC   +          + + LG+++      EG  Q     RV
Sbjct: 23  HFCGGSLVNENWVVSAAHCYKSR----------VEVRLGEHNIKV--TEGSEQFISSSRV 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P ++S N   DI L++LS     + YV+PV L   S AP
Sbjct: 71  IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVAL-PTSCAP 111

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 214 GGGMVFK---IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLG 270
           GG +V +   + +A   +  V + +    ++V  T+    F    RV  +P ++S N   
Sbjct: 26  GGSLVNENWVVSAAHCYKSRVEVRLGEHNIKV--TEGSEQFISSSRVIRHPNYSSYNIDN 83
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRV-SEELKM 329
           DI L++LS     + YV+PV L   S AP       G   TV GWG   +    S +L+ 
Sbjct: 84  DIMLIKLSKPATLNTYVQPVAL-PTSCAP------AGTMCTVSGWGNTMSSTADSNKLQC 136
Query: 330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             +PI+S+  C  S P       ++  FCAG+
Sbjct: 137 LNIPILSYSDCNNSYPGMI----TNAMFCAGY 164

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 27/120 (22%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +  +   PW  ALY       ++ CGG LV   +V+TAAHC+          SD   +
Sbjct: 4   GWECEQHSQPWQAALYHFS----TFQCGGILVHRQWVLTAAHCI----------SDNYQL 49
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
           +LG++  + F DE   Q   V     +P FN S           +Y  D+ LL+L+   D
Sbjct: 50  WLGRH--NLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPAD 107

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 24/203 (11%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G+    G++P+ V+L R  G   S+ CG S++  N V+TAAHCV     D   + + 
Sbjct: 1   IVGGKDAPVGKYPYQVSL-RLSG---SHRCGASILDNNNVLTAAHCV-----DGLSNLNR 51
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
           L +++G  +  +  D   V++  V +   Y  F   N   D+AL+ L++ + ++  V+P+
Sbjct: 52  LKVHVGTNYLSESGDVYDVEDAVVNKN--YDDFLLRN---DVALVHLTNPIKFNDLVQPI 106
Query: 140 CL----WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
            L     D  + P  L+    T +      GG          L         RD  RV D
Sbjct: 107 KLSTNDEDLESNPCTLTGWGSTRL------GGNTPNALQEIELIVHPQKQCERDQWRVID 160
Query: 196 TKHYVVFTDVANVCNGDSGGGMV 218
           +    +       C+GDSGG +V
Sbjct: 161 SHICTLTKRGEGACHGDSGGPLV 183

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 37/227 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  +  G  PW  A+Y  +       C GSLV   +V++AAHC +  P       D++ +
Sbjct: 4   GSSSLPGSHPWLAAIYIGDSF-----CAGSLVHTCWVVSAAHCFSHSP-----PRDSVSV 53
Query: 83  YLGKYHQHQFSDEGGVQNKQVKR---VHIYPTFNSSNYLGDIALLQLSSDVD----YSMY 135
            LG++  ++ +D    Q   +++     +Y  FN S++  D+ L++L    D     S +
Sbjct: 54  VLGQHFFNRTTDV--TQTFGIEKYIPYTLYSVFNPSDH--DLVLIRLKKKGDRCATRSQF 109
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS-AWYLRGIVSITVARD----- 189
           V+P+CL      P   S       C     G +   +   +  LR  +   VA       
Sbjct: 110 VQPICL------PEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSP 163
Query: 190 ---GLRVCDTKHYVVFTDV-ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
              G  +        + D  ++ C GDSGG +  + +   YL GI+S
Sbjct: 164 EVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIIS 210

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 37/227 (16%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  +  G  PW  A+Y  +       C GSLV   +V++AAHC +  P       D++ +
Sbjct: 4   GSSSLPGSHPWLAAIYIGDSF-----CAGSLVHTCWVVSAAHCFSHSP-----PRDSVSV 53
Query: 83  YLGKYHQHQFSDEGGVQNKQVKR---VHIYPTFNSSNYLGDIALLQLSSDVD----YSMY 135
            LG++  ++ +D    Q   +++     +Y  FN S++  D+ L++L    D     S +
Sbjct: 54  VLGQHFFNRTTDV--TQTFGIEKYIPYTLYSVFNPSDH--DLVLIRLKKKGDRCATRSQF 109
Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS-AWYLRGIVSITVARD----- 189
           V+P+CL      P   S       C     G +   +   +  LR  +   VA       
Sbjct: 110 VQPICL------PEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSP 163
Query: 190 ---GLRVCDTKHYVVFTDV-ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
              G  +        + D  ++ C GDSGG +  + +   YL GI+S
Sbjct: 164 EVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIIS 210

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           PW  AL++ E +    +CGG LV   +V+TAAHC  +K            + LG  H  Q
Sbjct: 13  PWQAALFQGERL----ICGGVLVGDRWVLTAAHCKKQK----------YSVRLGD-HSLQ 57
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSN---YLGDIALLQLSSDVDYSMYVRPVCL 141
             D+   Q  QV +   +P +N+SN   +  DI L++L +  +    V+PV L
Sbjct: 58  SRDQ-PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL 109

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+   Y  DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRETYNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +       A     + D    V F +   + C GDSGG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCE---ASSSFIITDNMVCVGFLEGGKDACQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 251 FTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           F D  +V ++P++NS N   DI L++LS     + YV  V L           A  G   
Sbjct: 64  FIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALPSS-------CASSGTRC 116
Query: 311 TVIGWG--YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            V GWG     +    + L+   +PI+S   C   N  +  Q TS+  FCAGF
Sbjct: 117 LVSGWGNLSGSSSNYPDTLRCLDLPILSSSSC---NSAYPGQITSN-MFCAGF 165

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 20  VTYGQKTARGQWPWHVAL--YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDS 77
           V  G     G WPW V+L  +        + CGG L++ ++V+TAAHC   K   K V  
Sbjct: 1   VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCFKNK---KKVTD 57
Query: 78  DTLVIYLGKYHQHQFSD-EGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYV 136
             L+    +         +  +Q + V+ + I+  + S   + DIAL++++  V    ++
Sbjct: 58  WRLIFGANEVVWGSNKPVKPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFI 117
Query: 137 RPVCLWDDSTAP 148
            P CL      P
Sbjct: 118 GPGCLPQFKAGP 129

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 96/237 (40%), Gaps = 57/237 (24%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V +             G+L+  N+V+TAAH V    Y++  D+  L I
Sbjct: 90  GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAV----YEQKHDASALDI 139
Query: 83  YLGKY-----HQHQFSDEGGVQNKQVKRVHIYPTF-NSSNYLGDIALLQLSSDVDYSMYV 136
            +G       H  Q   E          V I+  + + + +  DIAL++L++ V  +  +
Sbjct: 140 RMGTLKRLSPHYTQAWSEA---------VFIHEGYTHDAGFDNDIALIKLNNKVVINSNI 190
Query: 137 RPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFK------------------IDSAWYL 178
            P+CL          +   GT+   G +  G + +                   +   Y 
Sbjct: 191 TPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYP 250
Query: 179 RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA---WYLRGIVS 232
           RG V+  +   GL           +   + C GDSGG +VF +DS    W++ GIVS
Sbjct: 251 RGSVTANMLCAGLE----------SGGKDSCRGDSGGALVF-LDSETERWFVGGIVS 296

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD---GTVIGWGYDENDRVSEEL 327
           DIAL++L++ V  +  + P+CL      P + +    R    GT  GWG  +   ++  L
Sbjct: 174 DIALIKLNNKVVINSNITPICL------PRKEAESFMRTDDIGTASGWGLTQRGFLARNL 227
Query: 328 KMAIMPIVSHQQC--LWSNPQFFSQFTSDETFCAGFRN 363
               +PIV HQ+C   +  P +     +    CAG  +
Sbjct: 228 MYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLES 265

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 96/237 (40%), Gaps = 57/237 (24%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V +             G+L+  N+V+TAAH V    Y++  D+  L I
Sbjct: 165 GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAV----YEQKHDASALDI 214
Query: 83  YLGKY-----HQHQFSDEGGVQNKQVKRVHIYPTF-NSSNYLGDIALLQLSSDVDYSMYV 136
            +G       H  Q   E          V I+  + + + +  DIAL++L++ V  +  +
Sbjct: 215 RMGTLKRLSPHYTQAWSEA---------VFIHEGYTHDAGFDNDIALIKLNNKVVINSNI 265
Query: 137 RPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFK------------------IDSAWYL 178
            P+CL          +   GT+   G +  G + +                   +   Y 
Sbjct: 266 TPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYP 325
Query: 179 RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA---WYLRGIVS 232
           RG V+  +   GL           +   + C GDSGG +VF +DS    W++ GIVS
Sbjct: 326 RGSVTANMLCAGLE----------SGGKDSCRGDSGGALVF-LDSETERWFVGGIVS 371

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD---GTVIGWGYDENDRVSEEL 327
           DIAL++L++ V  +  + P+CL      P + +    R    GT  GWG  +   ++  L
Sbjct: 249 DIALIKLNNKVVINSNITPICL------PRKEAESFMRTDDIGTASGWGLTQRGFLARNL 302
Query: 328 KMAIMPIVSHQQC--LWSNPQFFSQFTSDETFCAGFRN 363
               +PIV HQ+C   +  P +     +    CAG  +
Sbjct: 303 MYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLES 340

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 96/237 (40%), Gaps = 57/237 (24%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V +             G+L+  N+V+TAAH V    Y++  D+  L I
Sbjct: 4   GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAV----YEQKHDASALDI 53
Query: 83  YLGKY-----HQHQFSDEGGVQNKQVKRVHIYPTF-NSSNYLGDIALLQLSSDVDYSMYV 136
            +G       H  Q   E          V I+  + + + +  DIAL++L++ V  +  +
Sbjct: 54  RMGTLKRLSPHYTQAWSEA---------VFIHEGYTHDAGFDNDIALIKLNNKVVINSNI 104
Query: 137 RPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFK------------------IDSAWYL 178
            P+CL          +   GT+   G +  G + +                   +   Y 
Sbjct: 105 TPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYP 164
Query: 179 RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA---WYLRGIVS 232
           RG V+  +   GL           +   + C GDSGG +VF +DS    W++ GIVS
Sbjct: 165 RGSVTANMLCAGLE----------SGGKDSCRGDSGGALVF-LDSETERWFVGGIVS 210

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD---GTVIGWGYDENDRVSEEL 327
           DIAL++L++ V  +  + P+CL      P + +    R    GT  GWG  +   ++  L
Sbjct: 88  DIALIKLNNKVVINSNITPICL------PRKEAESFMRTDDIGTASGWGLTQRGFLARNL 141
Query: 328 KMAIMPIVSHQQC--LWSNPQFFSQFTSDETFCAGFRN 363
               +PIV HQ+C   +  P +     +    CAG  +
Sbjct: 142 MYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLES 179

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 263 FNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDR 322
           F+  N   DI L++L   V  +  V P+CL      P +     G  G V GWG + N  
Sbjct: 179 FHPDNSTVDIGLIKLKQKVPVNERVMPICL------PSKDYVNVGLVGYVSGWGRNANLN 232
Query: 323 VSEELKMAIMPIVSHQQCLW-------------SNPQFFSQFTSDETFCAGF 361
            +E LK  ++P+   ++C+               +P       ++ TFCAG 
Sbjct: 233 FTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGL 284

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 22/217 (10%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G + A+G++P+ V L   E       CGG+L + + V+TAAHCV+    +  + +  
Sbjct: 1   VVGGTRAAQGEFPFMVRLINEENEGF---CGGALYAQDIVLTAAHCVSGSGNNTSITATG 57
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            V+ L      Q S    V++ +V +    P F    Y  D AL++L+  ++     +P 
Sbjct: 58  GVVDL------QSSSAVKVRSTKVLQA---PGFTKETYGKDWALIKLAQPIN-----QPT 103
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
                +TA  Q +        N + G    + + +        +   +   + V +    
Sbjct: 104 LKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMIC 163
Query: 200 VVFTDVANV--CNGDSGGGMVFKIDSA--WYLRGIVS 232
             + D   V  C GDSGG M F+ D+A  W   GIVS
Sbjct: 164 AGYPDTGGVDTCQGDSGGPM-FRKDNADEWIQVGIVS 199

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+   Y  DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRETYNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 49  CGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHI 108
           CGG LV   +V+TAAHC  +          ++ + LG ++    + E   Q   V +   
Sbjct: 30  CGGFLVRDKFVLTAAHCKGR----------SMTVTLGAHNIK--AKEETQQIIPVAKAIP 77
Query: 109 YPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM 168
           +P +N  +   DI LL+L  +   +  VRP+ L      P + + V+    C   +G G 
Sbjct: 78  HPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNL------PRRNAHVKPGDECY-VAGWGK 130
Query: 169 VFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSG-GGMVFKIDSAWYL 227
           V            V +TV +D  +VC+++    +     +C GDS   G  F+ DS   L
Sbjct: 131 VTPDGEFPKTLHEVKLTVQKD--QVCESQFQSSYNRANEICVGDSKIKGASFEEDSGGPL 188

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 49  CGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHI 108
           CGG LV   +V+TAAHC  +          ++ + LG ++    + E   Q   V +   
Sbjct: 30  CGGFLVRDKFVLTAAHCKGR----------SMTVTLGAHNIK--AKEETQQIIPVAKAIP 77
Query: 109 YPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM 168
           +P +N  +   DI LL+L  +   +  VRP+ L      P + + V+    C   +G G 
Sbjct: 78  HPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNL------PRRNAHVKPGDECY-VAGWGK 130
Query: 169 VFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSG-GGMVFKIDSAWYL 227
           V            V +TV +D  +VC+++    +     +C GDS   G  F+ DS   L
Sbjct: 131 VTPDGEFPKTLHEVKLTVQKD--QVCESQFQSSYNRANEICVGDSKIKGASFRGDSGGPL 188

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 57/237 (24%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V +             G+L+  N+V+TAAH V    Y++  D+  L I
Sbjct: 4   GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAV----YEQKHDASALDI 53
Query: 83  YLGKY-----HQHQFSDEGGVQNKQVKRVHIYPTF-NSSNYLGDIALLQLSSDVDYSMYV 136
            +G       H  Q   E          V I+  + + + +  DIAL++L++ V  +  +
Sbjct: 54  RMGTLKRLSPHYTQAWSEA---------VFIHEGYTHDAGFDNDIALIKLNNKVVINSNI 104
Query: 137 RPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFK------------------IDSAWYL 178
            P+CL          +   GT+   G +  G + +                   +   Y 
Sbjct: 105 TPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYP 164
Query: 179 RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA---WYLRGIVS 232
           RG V+  +   GL           +   + C GD+GG +VF +DS    W++ GIVS
Sbjct: 165 RGSVTANMLCAGLE----------SGGKDSCRGDAGGALVF-LDSETERWFVGGIVS 210

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 271 DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD---GTVIGWGYDENDRVSEEL 327
           DIAL++L++ V  +  + P+CL      P + +    R    GT  GWG  +   ++  L
Sbjct: 88  DIALIKLNNKVVINSNITPICL------PRKEAESFMRTDDIGTASGWGLTQRGFLARNL 141
Query: 328 KMAIMPIVSHQQC--LWSNPQFFSQFTSDETFCAGFRN 363
               +PIV HQ+C   +  P +     +    CAG  +
Sbjct: 142 MYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLES 179

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 46  SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQN-KQVK 104
           S  CGG L+  ++V+TAAHC   K          + + LG    H   ++  +Q    V 
Sbjct: 27  SKKCGGFLIREDFVLTAAHCSGSK----------IQVTLG---AHNIKEQEKMQQIIPVV 73
Query: 105 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS 164
           ++  +P +NS     DI LL+L S    S  V+P+ L      P +   V+   VC   +
Sbjct: 74  KIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNL------PRRNVKVKPGDVCY-VA 126
Query: 165 GGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC-----------NGDS 213
           G G +  +         V +TV  D  + C++     F     +C            GDS
Sbjct: 127 GWGKLGPMGKYSDTLQEVELTVQED--QKCESYLKNYFDKANEICAGDPKIKRASFRGDS 184
Query: 214 GGGMVFKIDSAWYLRGIVS 232
           GG +V K  +A    GIVS
Sbjct: 185 GGPLVCKKVAA----GIVS 199

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 107/250 (42%), Gaps = 50/250 (20%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G + A+G++P+ V L   E       CGG+L + + V+TAAHCV+    +  + +  
Sbjct: 1   VVGGTRAAQGEFPFMVRLINEENEGF---CGGALYAQDIVLTAAHCVSGSGNNTSITATG 57
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            V+ L      Q S    V++ +V +    P F    Y  D AL++L+  ++     +P 
Sbjct: 58  GVVDL------QSSSAVKVRSTKVLQA---PGFTKETYGKDWALIKLAQPIN-----QPT 103
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSG--------GGMVFKIDSAWYLRGIVSITVARDGL 191
                +TA  Q +        N + G          + F  D+A   R   S  +  + +
Sbjct: 104 LKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAA--CRSSSSFILVANEM 161
Query: 192 RVC---DTKHYVVFTDVANVCNGDSGGGMVFKIDSA--WYLRGIVS--ITVARDGLRVCD 244
            +C   DTK         + C GDSGG M F+ D+A  W   GIVS     AR G     
Sbjct: 162 -ICAGYDTKQ-------EDTCQGDSGGPM-FRKDNADEWVQVGIVSWGEGCARKG----- 207
Query: 245 TKHYVVFTDV 254
              Y V+T+V
Sbjct: 208 --KYGVYTEV 215

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 35/222 (15%)
Query: 43  INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ 102
           +N +++CGG LV+  +V++AAHC+      K      + + LG +   Q   E   +   
Sbjct: 20  LNGAHLCGGVLVAEQWVLSAAHCLEDAADGK------VQVLLGAHSLSQ--PEPSKRLYD 71
Query: 103 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW---DDSTAPLQLSAVEGTSV 159
           V R   +P +       D+ LLQLS        VRP+  W   D   AP  L  V G  +
Sbjct: 72  VLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRPL-PWQRVDRDVAPGTLCDVAGWGI 130
Query: 160 CNGDSGGGMVFKIDSAWYL------RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDS 213
            N         + DS  ++      R   +     DG      +     ++  + C GDS
Sbjct: 131 VNHAG-----RRPDSLQHVLLPVLDRATCNRRTHHDG--AITERLMCAESNRRDSCKGDS 183
Query: 214 GGGMVFKIDSAWYLRGIVSITVARDGLRVC-DTKHYVVFTDV 254
           GG +V        L G+VS      G RVC + K   ++T V
Sbjct: 184 GGPLV----CGGVLEGVVSW-----GSRVCGNRKKPGIYTRV 216

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +     WP   AL+    I+  Y CGGSL+S  +++TAAHC+    +   VD     +
Sbjct: 4   GVEAVPNSWPHQAALF----IDDMYFCGGSLISPEWILTAAHCMDGAGF---VD-----V 51
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG ++  +  DE      Q     ++  +NS     DIA+++L   V  +  +  V L
Sbjct: 52  VLGAHNIRE--DEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGL 108

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 45  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 92
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  + +V  V L   S AP     +    G ++ +G 
Sbjct: 93  IKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 151
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 152 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 208
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 209 ----LQGIVS 214

>pdb|1DLE|A Chain A, Factor B Serine Protease Domain Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 37/195 (18%)
Query: 30  QWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQ 89
           + PW   +           C G++VS  +V+TAAHC T       VD         K H 
Sbjct: 26  KQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-------VDD--------KEHS 70
Query: 90  HQFSDEGGVQNKQVKRVHIYPTFNSSN---------YLGDIALLQLSSDVDYSMYVRPVC 140
            + S  G  ++ +++ V  +P +N +          Y  D+AL++L + + Y   +RP+C
Sbjct: 71  IKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPIC 130
Query: 141 L--WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
           L   + +T  L+L     T+ C            +     + I ++ V+ +  ++   + 
Sbjct: 131 LPCTEGTTRALRLPP---TTTCQQQK--------EELLPAQDIKALFVSEEEKKLTRKEV 179
Query: 199 YVVFTDVANVCNGDS 213
           Y+   D    C  D+
Sbjct: 180 YIKNGDKKGSCERDA 194

>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B Length = 497

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 30  QWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQ 89
           + PW   +           C G++VS  +V+TAAHC T       VD         K H 
Sbjct: 225 KQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-------VDD--------KEHS 269
Query: 90  HQFSDEGGVQNKQVKRVHIYPTFNSSN---------YLGDIALLQLSSDVDYSMYVRPVC 140
            + S  G  ++ +++ V  +P +N +          Y  D+AL++L + + Y   +RP+C
Sbjct: 270 IKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPIC 329
Query: 141 L 141
           L
Sbjct: 330 L 330

>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin Length = 507

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 30  QWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQ 89
           + PW   +           C G++VS  +V+TAAHC T       VD         K H 
Sbjct: 233 KQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-------VDD--------KEHS 277
Query: 90  HQFSDEGGVQNKQVKRVHIYPTFNSSN---------YLGDIALLQLSSDVDYSMYVRPVC 140
            + S  G  ++ +++ V  +P +N +          Y  D+AL++L + + Y   +RP+C
Sbjct: 278 IKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPIC 337
Query: 141 L 141
           L
Sbjct: 338 L 338

>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 732

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           PW   +           C G++VS  +V+TAAHC T       VD         K H  +
Sbjct: 460 PWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-------VDD--------KEHSIK 504
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSN---------YLGDIALLQLSSDVDYSMYVRPVCL 141
            S  G  ++ +++ V  +P +N +          Y  D+AL++L + + Y   +RP+CL
Sbjct: 505 VSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 563

>pdb|2OK5|A Chain A, Human Complement Factor B Length = 752

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           PW   +           C G++VS  +V+TAAHC T       VD         K H  +
Sbjct: 479 PWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-------VDD--------KEHSIK 523
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSN---------YLGDIALLQLSSDVDYSMYVRPVCL 141
            S  G  ++ +++ V  +P +N +          Y  D+AL++L + + Y   +RP+CL
Sbjct: 524 VSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 582

>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B Length = 741

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           PW   +           C G++VS  +V+TAAHC T       VD         K H  +
Sbjct: 469 PWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT-------VDD--------KEHSIK 513
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSN---------YLGDIALLQLSSDVDYSMYVRPVCL 141
            S  G  ++ +++ V  +P +N +          Y  D+AL++L + + Y   +RP+CL
Sbjct: 514 VSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 572

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 45  LSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVK 104
           L  +CGG L+S  +V+TAAHC  ++          + + LG +   +   E   Q  +V+
Sbjct: 26  LRVICGGFLISRQFVLTAAHCKGRE----------ITVILGAHDVRK--RESTQQKIKVE 73
Query: 105 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS 145
           +  I+ ++NS   L DI LL+L   V+ +  V  V L   S
Sbjct: 74  KQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPS 114

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 61/237 (25%)
Query: 46  SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV-QNKQVK 104
           S  CGG L+  N+V+TAAHC  +          ++ + LG    H  ++E    Q  +V 
Sbjct: 27  SKFCGGFLIRRNFVLTAAHCAGR----------SITVTLGA---HNITEEEDTWQKLEVI 73
Query: 105 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS 164
           +   +P +N+S    DI LL+L      ++ V  +        P Q + V    +C    
Sbjct: 74  KQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------PSQFNFVPPGRMCR--- 124
Query: 165 GGGMVFKIDSAWYLRGIV---SITVARDGLRVCDTK---HYVVFTDVANVC--------- 209
                    + W   G++   S T+    LR+ D +   H+  F     +C         
Sbjct: 125 --------VAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKS 176
Query: 210 --NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFN 264
              GDSGG ++     A   +GIVS   +       D K   VFT +   H  P  N
Sbjct: 177 AFKGDSGGPLL----CAGAAQGIVSYGRS-------DAKPPAVFTRIS--HYQPWIN 220

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 61/237 (25%)
Query: 46  SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV-QNKQVK 104
           S  CGG L+  N+V+TAAHC  +          ++ + LG    H  ++E    Q  +V 
Sbjct: 27  SKFCGGFLIRRNFVLTAAHCAGR----------SITVTLG---AHNITEEEDTWQKLEVI 73
Query: 105 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS 164
           +   +P +N+S    DI LL+L      ++ V  +        P Q + V    +C    
Sbjct: 74  KQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------PSQFNFVPPGRMCR--- 124
Query: 165 GGGMVFKIDSAWYLRGIV---SITVARDGLRVCDTK---HYVVFTDVANVC--------- 209
                    + W   G++   S T+    LR+ D +   H+  F     +C         
Sbjct: 125 --------VAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKS 176
Query: 210 --NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFN 264
              GDSGG ++     A   +GIVS   +       D K   VFT +   H  P  N
Sbjct: 177 AFKGDSGGPLL----CAGVAQGIVSYGRS-------DAKPPAVFTRIS--HYRPWIN 220

>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of The Porcine Alpha Trypsin Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   A    P+ V+L        S+ CGGSL++  +V++AAHC   +          + +
Sbjct: 4   GYTCAANSIPYQVSLNSG-----SHFCGGSLINSQWVVSAAHCYKSR----------IQV 48
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG+++      EG  Q     ++  +P FN +    DI L++LSS    +  V  V L
Sbjct: 49  RLGEHNIDVL--EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSL 105

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 61/237 (25%)
Query: 46  SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV-QNKQVK 104
           S  CGG L+  N+V+TAAHC  +          ++ + LG    H  ++E    Q  +V 
Sbjct: 29  SKFCGGFLIRRNFVLTAAHCAGR----------SITVTLG---AHNITEEEDTWQKLEVI 75
Query: 105 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS 164
           +   +P +N+S    DI LL+L      ++ V  +        P Q + V    +C    
Sbjct: 76  KQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------PSQFNFVPPGRMCR--- 126
Query: 165 GGGMVFKIDSAWYLRGIV---SITVARDGLRVCDTK---HYVVFTDVANVC--------- 209
                    + W   G++   S T+    LR+ D +   H+  F     +C         
Sbjct: 127 --------VAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKS 178
Query: 210 --NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFN 264
              GDSGG ++     A   +GIVS   +       D K   VFT +   H  P  N
Sbjct: 179 AFKGDSGGPLL----CAGVAQGIVSYGRS-------DAKPPAVFTRIS--HYRPWIN 222

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   A    P+ V+L        S+ CGGSL++  +V++AAHC   +          + +
Sbjct: 12  GYTCAANSIPYQVSLNSG-----SHFCGGSLINSQWVVSAAHCYKSR----------IQV 56
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG+++      EG  Q     ++  +P FN +    DI L++LSS    +  V  V L
Sbjct: 57  RLGEHNIDVL--EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSL 113

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 61/237 (25%)
Query: 46  SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV-QNKQVK 104
           S  CGG L+  N+V+TAAHC  +          ++ + LG    H  ++E    Q  +V 
Sbjct: 27  SKFCGGFLIRRNFVLTAAHCAGR----------SITVTLG---AHNITEEEDTWQKLEVI 73
Query: 105 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS 164
           +   +P +N+S    DI LL+L      ++ V  +        P Q + V    +C    
Sbjct: 74  KQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------PSQFNFVPPGRMCR--- 124
Query: 165 GGGMVFKIDSAWYLRGIV---SITVARDGLRVCDTK---HYVVFTDVANVC--------- 209
                    + W   G++   S T+    LR+ D +   H+  F     +C         
Sbjct: 125 --------VAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKS 176
Query: 210 --NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFN 264
              GDSGG ++     A   +GIVS   +       D K   VFT +   H  P  N
Sbjct: 177 AFKGDSGGPLL----CAGVAQGIVSYGRS-------DAKPPAVFTRIS--HYRPWIN 220

>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein (Cap37) Length = 225

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G+K    Q+P+ +A  + +G   S+ CGG+L+   +V+TAA C   +      +   
Sbjct: 1   IVGGRKARPRQFPF-LASIQNQG---SHECGGALIHARFVMTAASCFQSQ------NPGV 50
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNY-----LGDIALLQLSSDVDYSM 134
             + LG Y   +       + +Q ++     + + + Y     L D+ LLQL  + + + 
Sbjct: 51  STVVLGAYDLRR-------RERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTS 103
Query: 135 YVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC 194
            V  + L      PLQ + VE  + C     G        + + R  V++TV  +     
Sbjct: 104 SVTILPL------PLQNATVEAGTRCQVAGWGSQRSGGRLSRFPR-FVNVTVTPEDQCRP 156
Query: 195 DTKHYVVFTDVANVCNGDSGGGMV 218
           +     V T    +CNGD G  +V
Sbjct: 157 NNVCTGVLTRRGGICNGDGGTPLV 180

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 33  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 80
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 81  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 139
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 140 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 196
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 197 ----LQGIVS 202

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 31  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 78
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 79  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 137
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 138 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 194
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 195 ----LQGIVS 200

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 31  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 78
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 79  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 137
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 138 NEPDLLKCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 194
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 195 ----LQGIVS 200

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++   G  PW VA+    GI     CGG  +   +++TAAHC+      +     T+V 
Sbjct: 325 GKRAQLGDLPWQVAIKDASGI----TCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVD 380
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSD 129
           ++         D   +  + V R+  +  +N+  Y  DIAL+++  D
Sbjct: 381 WI-------HPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKD 420

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           P+  +L R    N S++CGG LV   +V+TAAHC+ ++          L + LG    H 
Sbjct: 13  PYMASLQR----NGSHLCGGVLVHPKWVLTAAHCLAQR-------MAQLRLVLG---LHT 58
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSNYL-GDIALLQLSSDVDYSMYVRPVCL 141
               G      +K    +P +     L  D+ALLQL   V  S  +RP+ L
Sbjct: 59  LDSPG--LTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLAL 107

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 107/250 (42%), Gaps = 55/250 (22%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G + A+G++P+ V         LS  CGG+L + + V+TAAHCV+    +  + +  
Sbjct: 1   VVGGTRAAQGEFPFMV--------RLSMGCGGALYAQDIVLTAAHCVSGSGNNTSITATG 52
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            V+ L      Q S    V++ +V +    P F    Y  D AL++L+  ++     +P 
Sbjct: 53  GVVDL------QSSSAVKVRSTKVLQA---PGFTKETYGKDWALIKLAQPIN-----QPT 98
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSG--------GGMVFKIDSAWYLRGIVSITVARDGL 191
                +TA  Q +        N + G          + F  D+A   R   S  +  + +
Sbjct: 99  LKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAA--CRSSSSFILVANEM 156
Query: 192 RVC---DTKHYVVFTDVANVCNGDSGGGMVFKIDSA--WYLRGIVS--ITVARDGLRVCD 244
            +C   DTK         + C GDSGG M F+ D+A  W   GIVS     AR G     
Sbjct: 157 -ICAGYDTKQ-------EDTCQGDSGGPM-FRKDNADEWVQVGIVSWGEGCARKG----- 202
Query: 245 TKHYVVFTDV 254
              Y V+T+V
Sbjct: 203 --KYGVYTEV 210

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 17/108 (15%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   + G +P+ V++ R  G      CGGSL++ N V+TAAHCV+   Y +        I
Sbjct: 4   GTSASAGDFPFIVSISRNGG----PWCGGSLLNANTVLTAAHCVSG--YAQ----SGFQI 53
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDV 130
             G   +      GG+    +  V ++P+++ +N   D+A+L+LS+ +
Sbjct: 54  RAGSLSR----TSGGIT-SSLSSVRVHPSYSGNNN--DLAILKLSTSI 94

>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 80

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++  +   PW VA+Y       S+ CGG LV+  +V+TAAHC           +D   +
Sbjct: 4   GRECEKNSHPWQVAIYHYS----SFQCGGVLVNPKWVLTAAHC----------KNDNYEV 49
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS 115
           +LG++  + F +E   Q   V     +P FN S
Sbjct: 50  WLGRH--NLFENENTAQFFGVTADFPHPGFNLS 80

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G   A    P+ V+L        S+ CGGSL++  +V++AAHC   +          
Sbjct: 1   IVGGYTCAANSIPYQVSLNSG-----SHFCGGSLINSQWVVSAAHCYKSR---------- 45
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
           + + LG+++      EG  Q     ++  +P FN +    DI L++LSS    +  V  V
Sbjct: 46  IQVRLGEHNIDVL--EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATV 103
Query: 140 CL 141
            L
Sbjct: 104 SL 105

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   A    P+ V+L        S+ CGGSL++  +V++AAHC   +          + +
Sbjct: 4   GYTCAANSIPYQVSLNSG-----SHFCGGSLINSQWVVSAAHCYKSR----------IQV 48
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG+++      EG  Q     ++  +P FN +    DI L++LSS    +  V  V L
Sbjct: 49  RLGEHNIDVL--EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSL 105

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 17/108 (15%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   + G +P+ V++ R  G      CGGSL++ N V+TAAHCV+   Y +        I
Sbjct: 4   GTSASAGDFPFIVSISRNGG----PWCGGSLLNANTVLTAAHCVSG--YAQ----SGFQI 53
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDV 130
             G   +      GG+    +  V ++P+++ +N   D+A+L+LS+ +
Sbjct: 54  RAGSLSR----TSGGIT-SSLSSVRVHPSYSGNNN--DLAILKLSTSI 94

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 17/108 (15%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   + G +P+ V++ R  G      CGGSL++ N V+TAAHCV+              I
Sbjct: 4   GTSASAGDFPFIVSISRNGG----PWCGGSLLNANTVLTAAHCVSGYAQSG------FQI 53
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDV 130
             G   +      GG+    +  V ++P+++ +N   D+A+L+LS+ +
Sbjct: 54  RAGSLSR----TSGGIT-SSLSSVRVHPSYSGNNN--DLAILKLSTSI 94

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 35/222 (15%)
Query: 43  INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ 102
           +N +++CGG LV+  +V++AAHC+      K      + + LG +   Q   E   +   
Sbjct: 27  LNGAHLCGGVLVAEQWVLSAAHCLEDAADGK------VQVLLGAHSLSQ--PEPSKRLYD 78
Query: 103 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW---DDSTAPLQLSAVEGTSV 159
           V R   +P         D+ LLQLS        VRP+  W   D   AP  L  V G  +
Sbjct: 79  VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL-PWQRVDRDVAPGTLCDVAGWGI 137
Query: 160 CNGDSGGGMVFKIDSAWYL------RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDS 213
            N         + DS  ++      R   +     DG      +     ++  + C GDS
Sbjct: 138 VNHAG-----RRPDSLQHVLLPVLDRATCNRRTHHDG--AITERLMCAESNRRDSCKGDS 190
Query: 214 GGGMVFKIDSAWYLRGIVSITVARDGLRVC-DTKHYVVFTDV 254
           GG +V        L G+V+      G RVC + K   ++T V
Sbjct: 191 GGPLVC----GGVLEGVVT-----SGSRVCGNRKKPGIYTRV 223

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 61/237 (25%)
Query: 46  SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV-QNKQVK 104
           S  CGG L+  N+V+TAAHC  +          ++ + LG    H  ++E    Q  +V 
Sbjct: 27  SKFCGGFLIRRNFVLTAAHCAGR----------SITVTLGA---HNITEEEDTWQKLEVI 73
Query: 105 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS 164
           +   +P +N+S    DI LL+L      ++ V  +        P Q + V    +C    
Sbjct: 74  KQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------PSQKNFVPPGRMCR--- 124
Query: 165 GGGMVFKIDSAWYLRGIV---SITVARDGLRVCDTK---HYVVFTDVANVC--------- 209
                    + W   G++   S T+    LR+ D +   H+  F     +C         
Sbjct: 125 --------VAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKS 176
Query: 210 --NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFN 264
              GDSGG ++     A   +GIVS   +       D K   VFT +   H  P  N
Sbjct: 177 AFKGDSGGPLL----CAGAAQGIVSYGRS-------DAKPPAVFTRIS--HYQPWIN 220

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   A    P+ V+L        S+ CGGSL++  +V++AAHC   +          + +
Sbjct: 4   GYTCAANSVPYQVSLNSG-----SHFCGGSLINSQWVVSAAHCYKSR----------IQV 48
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG+++      EG  Q     ++  +P FN +    DI L++LSS    +  V  V L
Sbjct: 49  RLGEHNIDVL--EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSL 105

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 29/126 (23%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G K  +   PW VA+         Y+CGG L+  ++VITAAHC           S+   +
Sbjct: 4   GYKCEKNSQPWQVAVIN------EYLCGGVLIDPSWVITAAHCY----------SNNYQV 47
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTF------NSS-----NYLGDIALLQLSSDVD 131
            LG+   + F DE   Q + V++   +P +      N +     ++  D+ LL LS   D
Sbjct: 48  LLGR--NNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPAD 105
Query: 132 YSMYVR 137
            +  V+
Sbjct: 106 ITGGVK 111

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   A    P+ V+L        S+ CGGSL++  +V++AAHC   +          + +
Sbjct: 4   GYTCAANSIPYQVSLNSG-----SHFCGGSLINSQWVVSAAHCYKSR----------IQV 48
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG+++      EG  Q     ++  +P FN +    DI L++LSS    +  V  V L
Sbjct: 49  RLGEHNIDVL--EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSL 105

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 34/185 (18%)
Query: 48  VCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVH 107
           +C G+L++ ++V+TAAHC   K            + LG +   +  +E   Q   VK+  
Sbjct: 25  ICAGALIAKDWVLTAAHCNLNKRSQ---------VILGAHSITR--EEPTKQIMLVKKEF 73
Query: 108 IYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGG 167
            YP ++ +   GD+ LLQL+     + YV  + L      P +   V+  ++C   +G G
Sbjct: 74  PYPCYDPATREGDLKLLQLTEKAKINKYVTILHL------PKKGDDVKPGTMCQ-VAGWG 126
Query: 168 MVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANV--------------CNGDS 213
                +SA +   +  + +     +VC+ +++  F  V  +              CNGDS
Sbjct: 127 RTH--NSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDS 184
Query: 214 GGGMV 218
           G  ++
Sbjct: 185 GSPLL 189

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKSSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 34/185 (18%)
Query: 48  VCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVH 107
           +C G+L++ ++V+TAAHC   K            + LG +   +  +E   Q   VK+  
Sbjct: 25  ICAGALIAKDWVLTAAHCNLNKRSQ---------VILGAHSITR--EEPTKQIMLVKKEF 73
Query: 108 IYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGG 167
            YP ++ +   GD+ LLQL+     + YV  + L      P +   V+  ++C   +G G
Sbjct: 74  PYPCYDPATREGDLKLLQLTEKAKINKYVTILHL------PKKGDDVKPGTMCQ-VAGWG 126
Query: 168 MVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANV--------------CNGDS 213
                +SA +   +  + +     +VC+ +++  F  V  +              CNGDS
Sbjct: 127 RTH--NSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDS 184
Query: 214 GGGMV 218
           G  ++
Sbjct: 185 GSPLL 189

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   A    P+ V+L        S+ CGGSL++  +V++AAHC   +          + +
Sbjct: 4   GYTCAANSIPYQVSLNSG-----SHFCGGSLINSQWVVSAAHCYKSR----------IQV 48
Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG+++      EG  Q     ++  +P FN +    DI L++LSS       V  V L
Sbjct: 49  RLGEHNIDVL--EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVATVSL 105

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 35/222 (15%)
Query: 43  INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ 102
           +N +++CGG LV+  +V++AAHC+      K      + + LG +   Q   E   +   
Sbjct: 20  LNGAHLCGGVLVAEQWVLSAAHCLEDAADGK------VQVLLGAHSLSQ--PEPSKRLYD 71
Query: 103 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW---DDSTAPLQLSAVEGTSV 159
           V R   +P         D+ LLQLS        VRP+  W   D   AP  L  V G  +
Sbjct: 72  VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL-PWQRVDRDVAPGTLCDVAGWGI 130
Query: 160 CNGDSGGGMVFKIDSAWYL------RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDS 213
            N         + DS  ++      R   +     DG      +     ++  + C GDS
Sbjct: 131 VNHAG-----RRPDSLQHVLLPVLDRATCNRRTHHDG--AITERLMCAESNRRDSCKGDS 183
Query: 214 GGGMVFKIDSAWYLRGIVSITVARDGLRVC-DTKHYVVFTDV 254
           GG +V        L G+V+      G RVC + K   ++T V
Sbjct: 184 GGPLVC----GGVLEGVVT-----SGSRVCGNRKKPGIYTRV 216

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN-VCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +     C GDSGG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKGSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 33  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 80
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 81  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 139
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GD+GG +V   +
Sbjct: 140 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE 196
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 197 ----LQGIVS 202

>pdb|2I6Q|A Chain A, Complement Component C2a Length = 517

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           PWHV +           C G+L+S  +V+TAAHC     +    D     + +G   + Q
Sbjct: 244 PWHVTIKPKS----QETCRGALISDQWVLTAAHC-----FRDGNDHSLWRVNVGD-PKSQ 293
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSN------YLGDIALLQLSSDVDYSMYVRPVCLWDDS 145
           +  E  ++   +     +  F   N      Y  DIALL+L+  V  S + RP+CL    
Sbjct: 294 WGKEFLIEKAVISPG--FDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTM 351
Query: 146 TAPLQLSAVEGTS 158
            A L L   +G++
Sbjct: 352 EANLALRRPQGST 364

>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3- And C5- Convertase Of Human Complement Length = 509

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           PWHV +           C G+L+S  +V+TAAHC     +    D     + +G   + Q
Sbjct: 236 PWHVTIKPKS----QETCRGALISDQWVLTAAHC-----FRDGNDHSLWRVNVGD-PKSQ 285
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSN------YLGDIALLQLSSDVDYSMYVRPVCLWDDS 145
           +  E  ++   +     +  F   N      Y  DIALL+L+  V  S + RP+CL    
Sbjct: 286 WGKEFLIEKAVISPG--FDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTM 343
Query: 146 TAPLQLSAVEGTS 158
            A L L   +G++
Sbjct: 344 EANLALRRPQGST 356

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 33/120 (27%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           PW VA+Y        + CGG LV   +V+TAAHC+          SD   I+LG+++  +
Sbjct: 13  PWQVAVYHQG----HFQCGGVLVHPQWVLTAAHCM----------SDDYQIWLGRHNLSK 58
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 151
             DE   Q  QV    + P F       D++LL+         Y+RP   +DD +  L L
Sbjct: 59  --DEDTAQFHQVSDSFLDPQF-------DLSLLK-------KKYLRP---YDDISHDLML 99

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 29/204 (14%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G+K    Q+P+ +A  + +G    + CGG+L+   +V+TAA C   +      +   
Sbjct: 1   IVGGRKARPRQFPF-LASIQNQG---RHFCGGALIHARFVMTAASCFQSQ------NPGV 50
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNY-----LGDIALLQLSSDVDYSM 134
             + LG Y   +       + +Q ++     + + + Y     L D+ LLQL  + + + 
Sbjct: 51  STVVLGAYDLRR-------RERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTS 103
Query: 135 YVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC 194
            V  + L      PLQ + VE  + C     G        + + R  V++TV  +     
Sbjct: 104 SVTILPL------PLQNATVEAGTRCQVAGWGSQRSGGRLSRFPR-FVNVTVTPEDQCRP 156
Query: 195 DTKHYVVFTDVANVCNGDSGGGMV 218
           +     V T    +CNGD G  +V
Sbjct: 157 NNVCTGVLTRRGGICNGDGGTPLV 180

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 29/204 (14%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           +  G+K    Q+P+ +A  + +G    + CGG+L+   +V+TAA C   +      +   
Sbjct: 1   IVGGRKARPRQFPF-LASIQNQG---RHFCGGALIHARFVMTAASCFQSQ------NPGV 50
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNY-----LGDIALLQLSSDVDYSM 134
             + LG Y   +       + +Q ++     + + + Y     L D+ LLQL  + + + 
Sbjct: 51  STVVLGAYDLRR-------RERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTS 103
Query: 135 YVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC 194
            V  + L      PLQ + VE  + C     G        + + R  V++TV  +     
Sbjct: 104 SVTILPL------PLQNATVEAGTRCQVAGWGSQRSGGRLSRFPR-FVNVTVTPEDQCRP 156
Query: 195 DTKHYVVFTDVANVCNGDSGGGMV 218
           +     V T    +CNGD G  +V
Sbjct: 157 NNVCTGVLTRRGGICNGDQGTPLV 180

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 35  VALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSD 94
           VA + T G    + CGG+L++  +V+TAAHC          DS    + LG + +   ++
Sbjct: 16  VAFFNTTG----FFCGGTLINPEWVVTAAHC----------DSTNFQMQLGVHSKKVLNE 61
Query: 95  EGGVQNKQVKRVHIYPTFNSSNYL-GDIALLQLSSDVDYSMYV 136
           +   Q +  K   I P  N++  L  DI L++L   +  S ++
Sbjct: 62  D--EQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHI 102

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GD+GG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 31  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 78
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P F+      DI L++LSS V  +  V  V L   S AP
Sbjct: 79  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAP 119

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGHTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 130 NHPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P F+      DI L++LSS V  +  V  V L   S AP
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAP 111

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P F+      DI L++LSS V  +  V  V L   S AP
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAP 111

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
             +P F+      DI L++LSS V  +  V  V L   S AP
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVAL-PSSCAP 111

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 23/150 (15%)
Query: 221 IDSAW-------YLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIA 273
           I+S W       Y  GI  + +  D + V +      F    +  ++P++NS  Y  DI 
Sbjct: 30  INSQWVVSAAHCYKSGI-QVRLGEDNINVVEGNEQ--FISASKSIVHPSYNSETYNNDIM 86
Query: 274 LLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVS--EELKMAI 331
           L++L S    +  V  + L      P    A  G    + GWG  ++   S  + LK   
Sbjct: 87  LIKLKSAASLNSRVASISL------PTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLK 139
Query: 332 MPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            PI+S   C  + P    Q TS+  FCAG+
Sbjct: 140 APILSDSSCKSAYP---GQITSN-MFCAGY 165

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 32  PWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ 91
           P+  +L R    N S++CGG LV   +V+TAAHC+ ++     +    LV+ L     H 
Sbjct: 13  PYMASLQR----NGSHLCGGVLVHPKWVLTAAHCLAQR-----MAQLRLVLGL-----HT 58
Query: 92  FSDEGGVQNKQVKRVHIYPTFNSSNYL-GDIALLQLSSDVDYSMYVRPVCL 141
               G      +K    +P +     L  ++ALLQL   V  S  +RP+ L
Sbjct: 59  LDSPG--LTFHIKAAIQHPRYKPVPALENNLALLQLDGKVKPSRTIRPLAL 107

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 89/222 (40%), Gaps = 35/222 (15%)
Query: 43  INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ 102
           +N +++CGG LV+  +V++AAHC+      K      + + LG +   Q   E   +   
Sbjct: 20  LNGAHLCGGVLVAEQWVLSAAHCLEDAADGK------VQVLLGAHSLSQ--PEPSKRLYD 71
Query: 103 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW---DDSTAPLQLSAVEGTSV 159
           V R   +P         D+ LLQLS        VRP+  W   D   AP  L  V G  +
Sbjct: 72  VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL-PWQRVDRDVAPGTLCDVAGWGI 130
Query: 160 CNGDSGGGMVFKIDSAWYL------RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDS 213
            N         + DS  ++      R   +     DG      +     ++  + C GD+
Sbjct: 131 VNHAG-----RRPDSLQHVLLPVLDRATCNRRTHHDG--AITERLMCAESNRRDSCKGDA 183
Query: 214 GGGMVFKIDSAWYLRGIVSITVARDGLRVC-DTKHYVVFTDV 254
           GG +V        L G+V+      G RVC + K   ++T V
Sbjct: 184 GGPLVC----GGVLEGVVT-----SGSRVCGNRKKPGIYTRV 216

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      DI L++LSS V  +  V  + L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIAL-PSSCAPAGTQCLISGWGHTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 130 NHPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 35  VALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSD 94
           VA + T G    + CGG+L++  +V+TAAHC          DS    + LG + +   ++
Sbjct: 16  VAFFNTTG----FFCGGTLINPEWVVTAAHC----------DSTDFQMQLGVHSKKVLNE 61
Query: 95  EGGVQNKQVKRVHIYPTFNSSNYL-GDIALLQLSSDVDYSMYV 136
           +   Q +  K   I P  N++  L  DI L++L   +  S ++
Sbjct: 62  D--EQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHI 102

>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP Length = 234

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 24/229 (10%)
Query: 29  GQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
           G  PW V+L   +G    + CGGSLV   +++TA  C +      P+      ++LG   
Sbjct: 7   GNSPWTVSLRNRQG---QHFCGGSLVKEQWILTARQCFSS--CHMPLTGYE--VWLGTLF 59
Query: 89  QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDD--ST 146
           Q+    E  +Q   V ++   P+ +       + LL+L   V  +  V  +CL  +    
Sbjct: 60  QNPQHGEPSLQRVPVAKMVCGPSGS------QLVLLKLERSVTLNQRVALICLPPEWYVV 113
Query: 147 APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA 206
            P     + G     G +G   V  +     +         R  +R  +     +   V 
Sbjct: 114 PPGTKCEIAGWGETKG-TGNDTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVG 172
Query: 207 NVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDV 254
             C GD GG +     ++W L GI+         RVC    +  VFT V
Sbjct: 173 -ACEGDYGGPLACFTHNSWVLEGIIIPN------RVCARSRWPAVFTRV 214

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGNEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      +I L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 33/217 (15%)
Query: 30  QWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQ 89
           ++PW V++ R    + S+ CGGS+++  +V+ AAHC+  +       +  LV  +    +
Sbjct: 11  EFPWQVSVRRKS--SDSHFCGGSIINDRWVVCAAHCMQGE-------APALVSLV--VGE 59
Query: 90  HQFSDEGGV-QNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
           H  S    V Q   V  + +   ++ +    D+++++ +  + + + V P+C  D +   
Sbjct: 60  HDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPAN-- 117
Query: 149 LQLSAVEGTSVCNG----DSGGG--------MVFKIDSAWYLRGIVSITVARDGLRVCDT 196
                V   S C+G    +SGG         +   I +  +   + +     D + +C T
Sbjct: 118 ---DYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDM-ICAT 173
Query: 197 KHYVVFTDVANVCNGDSGGGMVFKIDSAWY-LRGIVS 232
            +    TD  + C GDSGG +  K  S  + L GIVS
Sbjct: 174 DN-TGMTD-RDSCQGDSGGPLSVKDGSGIFSLVGIVS 208

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 46  SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKR 105
           S+ CGGSL+S  +V++AAHC   +          + + LG+++      EG  Q     +
Sbjct: 22  SHFCGGSLISEQWVVSAAHCYKTR----------IQVRLGEHNIKVL--EGNEQFINAAK 69
Query: 106 VHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
           +  +P +N      DI L++LSS    +  V  + L    TAP
Sbjct: 70  IIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISL---PTAP 109

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 47  YVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRV 106
           + CGGSL++  +V++AAHC   +          + + LG+++ +    EG  Q     ++
Sbjct: 23  HFCGGSLINDQWVVSAAHCYKSR----------IQVRLGEHNINVL--EGDEQFVNAAKI 70
Query: 107 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE---GTSVCNGD 163
             +P F+      +I L++LSS V  +  V  V L   S AP     +    G ++ +G 
Sbjct: 71  IKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVAL-PSSCAPAGTQCLISGWGNTLSSGV 129
Query: 164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA-NVCNGDSGGGMVFKID 222
           +   ++  +D+    +     +      ++ D    V F +   + C GDSGG +V   +
Sbjct: 130 NEPDLLQCLDAPLLPQADCEASYPG---KITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE 186
Query: 223 SAWYLRGIVS 232
               L+GIVS
Sbjct: 187 ----LQGIVS 192

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 43  INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ 102
           +N +++CGG LV+  +V++AAHC+      K      + + LG +   Q   E   +   
Sbjct: 20  LNGAHLCGGVLVAEQWVLSAAHCLEDAADGK------VQVLLGAHSLSQ--PEPSKRLYD 71
Query: 103 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW---DDSTAPLQLSAVEGTSV 159
           V R   +P         D+ LLQLS        VRP+  W   D   AP  L  V G  +
Sbjct: 72  VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL-PWQRVDRDVAPGTLCDVAGWGI 130
Query: 160 CNGDSGGGMVFKIDSAWYL------RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDS 213
            N         + DS  ++      R   +     DG      +     ++  + C GDS
Sbjct: 131 VNHAG-----RRPDSLQHVLLPVLDRATCNRRTHHDG--AITERLMCAESNRRDSCKGDS 183
Query: 214 GGGMV 218
           GG +V
Sbjct: 184 GGPLV 188

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 29/217 (13%)
Query: 20  VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT 79
           V  G + A+G++P+ V         LS  CGG+L + + V+TAAHCV+    +  + +  
Sbjct: 1   VVGGTRAAQGEFPFMV--------RLSMGCGGALYAQDIVLTAAHCVSGSGNNTSITATG 52
Query: 80  LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPV 139
            V+ L           G     +  +V   P +N +    D AL++L+  ++     +P 
Sbjct: 53  GVVDL---------QSGAAVKVRSTKVLQAPGYNGTGK--DWALIKLAQPIN-----QPT 96
Query: 140 CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
                +TA  Q +        N + G    + + +        +   A     V + +  
Sbjct: 97  LKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEIC 156
Query: 200 VVFTDVANV--CNGDSGGGMVFKIDSA--WYLRGIVS 232
             + D   V  C GDSGG M F+ D+A  W   GIVS
Sbjct: 157 AGYPDTGGVDTCQGDSGGPM-FRKDNADEWIQVGIVS 192

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 46  SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKR 105
           S+ CGGSL+S  +V++AAHC   +          + + LG+++      EG  Q     +
Sbjct: 22  SHFCGGSLISEQWVVSAAHCYKTR----------IQVRLGEHNIKVL--EGNEQFINAVK 69
Query: 106 VHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
           +  +P +N      DI L++LSS    +  V  + L    TAP
Sbjct: 70  IIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISL---PTAP 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	1e-39
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	5e-18
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	2e-38
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	4e-22
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	3e-38
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	2e-20
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	4e-38
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	2e-20
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	9e-38
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	9e-20
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	4e-37
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	6e-19
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	5e-37
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	3e-19
1aut_C	250	Activated protein C; serine proteinase, plasma cal	6e-37
1aut_C	250	Activated protein C; serine proteinase, plasma cal	9e-20
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	6e-37
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	3e-20
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	7e-37
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	2e-21
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	9e-37
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	2e-18
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	1e-36
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	2e-22
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	2e-36
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	6e-22
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	2e-36
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	3e-18
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	2e-36
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	7e-20
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	3e-36
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	7e-18
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	2e-04
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	9e-36
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	7e-17
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	2e-35
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	5e-18
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	4e-35
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	1e-16
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	4e-04
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	1e-34
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	1e-16
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	2e-04
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	1e-34
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	5e-19
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	2e-34
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	1e-14
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	2e-34
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	6e-18
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	3e-34
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	2e-14
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	3e-34
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	2e-20
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	4e-34
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	5e-17
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	3e-04
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	4e-34
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	2e-17
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	6e-34
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	7e-12
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	7e-34
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	1e-16
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	9e-34
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	5e-16
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	1e-33
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	6e-16
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	2e-33
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	3e-20
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	2e-33
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	5e-16
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	3e-33
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	8e-15
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	4e-33
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	3e-17
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	4e-33
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	2e-20
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	4e-33
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	7e-16
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	3e-04
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	4e-33
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	3e-21
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	6e-33
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	3e-14
1md8_A	329	C1R complement serine protease; innate immunity, a	8e-33
1md8_A	329	C1R complement serine protease; innate immunity, a	2e-19
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	1e-32
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	7e-15
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	2e-32
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	3e-16
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	2e-32
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	2e-13
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	2e-32
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	6e-21
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	2e-32
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	9e-17
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	2e-32
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	7e-18
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	3e-32
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	8e-14
1a7s_A	225	Heparin binding protein; serine protease homolog,	3e-32
1a7s_A	225	Heparin binding protein; serine protease homolog,	7e-15
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	3e-32
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	2e-17
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	3e-32
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	1e-16
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	3e-32
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	7e-15
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	4e-32
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	3e-11
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	5e-32
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	8e-17
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	7e-32
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	3e-13
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	8e-32
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	7e-12
1gpz_A	399	Complement C1R component; hydrolase, activation, i	8e-32
1gpz_A	399	Complement C1R component; hydrolase, activation, i	2e-19
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	9e-32
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	4e-15
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	1e-31
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	9e-20
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	1e-31
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	5e-15
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	2e-31
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	3e-16
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	2e-31
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	5e-16
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	3e-31
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	1e-17
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	4e-31
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	2e-11
2aiq_A	231	Protein C activator; snake venom serine proteinase	5e-31
2aiq_A	231	Protein C activator; snake venom serine proteinase	7e-16
1elv_A	333	Complement C1S component; trypsin-like serin prote	8e-31
1elv_A	333	Complement C1S component; trypsin-like serin prote	9e-20
3hrz_D	741	Complement factor B; serine protease, glycosilated	8e-31
3hrz_D	741	Complement factor B; serine protease, glycosilated	9e-12
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	1e-30
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	3e-16
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	1e-30
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	7e-16
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	1e-30
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	2e-14
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-30
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	1e-17
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	3e-30
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	2e-16
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	4e-30
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	5e-17
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	6e-30
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	8e-15
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	8e-30
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	9e-17
2xrc_A	565	Human complement factor I; immune system, hydrolas	8e-30
2xrc_A	565	Human complement factor I; immune system, hydrolas	5e-16
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	9e-30
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	6e-13
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	1e-29
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	7e-16
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	3e-29
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	7e-17
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	3e-29
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	3e-12
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	4e-29
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	3e-16
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	5e-29
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	3e-16
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	5e-29
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	7e-18
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	5e-29
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	2e-15
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	1e-28
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	6e-12
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	1e-28
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	2e-12
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	3e-28
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	5e-16
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	5e-28
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	2e-12
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	1e-27
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	3e-12
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	8e-26
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	6e-14
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	2e-25
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	8e-15
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	2e-16
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	5e-12
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	8e-06
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	9e-09
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	1e-07
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	1e-05
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	1e-05
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	2e-04

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  139 bits (353), Expect = 1e-39
 Identities = 58/236 (24%), Positives = 86/236 (36%), Gaps = 57/236 (24%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G++P+ ++   T      + CG S+ + NY ITA HCV    Y+ P     L I
Sbjct: 4   GTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENP---SGLQI 60

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
             G+       +EG  Q   V ++ ++  F+ +    DI+LL+LS  + ++  V P+ L 
Sbjct: 61  VAGELDMS--VNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALP 118

Query: 142 --------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS---AW 176
                         W    +    P  L  V         C  D G   +   DS   A 
Sbjct: 119 EQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEIL--DSMICAG 176

Query: 177 YLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
              G              D+            C GDSGG +      + YL GIVS
Sbjct: 177 VPEGGK------------DS------------CQGDSGGPLAASDTGSTYLAGIVS 208

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score = 81.1 bits (201), Expect = 5e-18
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 11/115 (9%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
               V ++ ++  F+ +    DI+LL+LS  + ++  V P+ L +              D
Sbjct: 75  QIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTA-------TGD 127

Query: 310 GTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
             V GWG   E     + L+   +P+VS + C      + +    D   CAG   
Sbjct: 128 VIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDC---RADYGADEILDSMICAGVPE 179

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  136 bits (346), Expect = 2e-38
 Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 43/227 (18%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+          +    +
Sbjct: 4   GQECKDGECPWQALLINEEN---EGFCGGTILSEFYILTAAHCLY--------QAKRFKV 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110

Query: 143 DDSTAPLQLSAVEGTSVCNGDSG-GGMVFKIDSAWYLRG----IVSITVARDGLRVCDTK 197
           +   A   L   +   V    SG G    K + +  L+      V           C   
Sbjct: 111 ERDWAESTLMTQKTGIV----SGFGRTHEKGEQSTRLKMLEVPYVD-------RNSCKLS 159

Query: 198 HYVVFTDVANV------------CNGDSGGGMVFKIDSAWYLRGIVS 232
              + T   N+            C GDSGG  V +    +++ GIVS
Sbjct: 160 SSFIITQ--NMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVS 204

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 92.7 bits (231), Expect = 4e-22
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
              +V+ V  +  F    Y  DIA+L+L + + + M V P CL +   A   L     + 
Sbjct: 67  AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMT--QKT 124

Query: 310 GTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
           G V G+G   E    S  LKM  +P V    C  S+        +   FCAG+  
Sbjct: 125 GIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFII----TQNMFCAGYDT 175

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  136 bits (345), Expect = 3e-38
 Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 37/235 (15%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G  PW V L+R     L  +CG SL+S  +V+TAAHC+   P+DK    + L++
Sbjct: 4   GSDAEIGMSPWQVMLFRKSPQEL--LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 61

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCL 141
            +GK+ + +  +    +   +++++I+P +N   N   DIAL++L   V +S Y+ PVCL
Sbjct: 62  RIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120

Query: 142 WDDSTAPLQLSAVEGTSVC------NGDSGGGMVFKIDSAWYLRGI-VSITVARDGLRVC 194
            D  TA   L A  G          N                L+ + + I V R    VC
Sbjct: 121 PDRETAASLLQA--GYK-GRVTGWGNLKETWTANVGKGQPSVLQVVNLPI-VERP---VC 173

Query: 195 DTKHYVVFTDVANV---------------CNGDSGGGMVFK--IDSAWYLRGIVS 232
                +  TD  N+               C GDSGG  V K   ++ WY  GIVS
Sbjct: 174 KDSTRIRITD--NMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 14/126 (11%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
            ++    + +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L 
Sbjct: 72  ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ 131

Query: 304 AVEGRDGTVIGWGY-------DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDET 356
           A  G  G V GWG        +        L++  +PIV    C         + T +  
Sbjct: 132 A--GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC---KDSTRIRITDN-M 185

Query: 357 FCAGFR 362
           FCAG++
Sbjct: 186 FCAGYK 191

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  137 bits (346), Expect = 4e-38
 Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 37/235 (15%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G  PW V L+R        +CG SL+S  +V+TAAHC+   P+DK    + L++
Sbjct: 34  GSDAEIGMSPWQVMLFRKS--PQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 91

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCL 141
            +GK+ + +  +    +   +++++I+P +N   N   DIAL++L   V +S Y+ PVCL
Sbjct: 92  RIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 150

Query: 142 WDDSTAPLQLSAVEGTSVC------NGDSGGGMVFKIDSAWYLRGI-VSITVARDGLRVC 194
            D  TA   L A  G          N                L+ + + I V R    VC
Sbjct: 151 PDRETAASLLQA--GYK-GRVTGWGNLKETWTANVGKGQPSVLQVVNLPI-VERP---VC 203

Query: 195 DTKHYVVFTDVANV---------------CNGDSGGGMVFK--IDSAWYLRGIVS 232
                +  TD  N+               C GDSGG  V K   ++ WY  GIVS
Sbjct: 204 KDSTRIRITD--NMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 256

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 89.0 bits (221), Expect = 2e-20
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 14/126 (11%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
            ++    + +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L 
Sbjct: 102 ERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ 161

Query: 304 AVEGRDGTVIGWGY-------DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDET 356
           A  G  G V GWG        +        L++  +PIV    C         + T +  
Sbjct: 162 A--GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC---KDSTRIRITDN-M 215

Query: 357 FCAGFR 362
           FCAG++
Sbjct: 216 FCAGYK 221

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  134 bits (340), Expect = 9e-38
 Identities = 52/238 (21%), Positives = 88/238 (36%), Gaps = 63/238 (26%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G WPW V LY     +   +CG SLVS +++++AAHCV    Y + ++      
Sbjct: 4   GSDAKEGAWPWVVGLYY----DDRLLCGASLVSSDWLVSAAHCV----YGRNLEPSKWTA 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG + +           + +  + I P +N      DIA++ L   V+Y+ Y++P+ L 
Sbjct: 56  ILGLHMKSN-LTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLP 114

Query: 142 ----------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
                           W       T    L   +        C        +   ++   
Sbjct: 115 EENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNIT--ENMIC 172

Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           A Y  G +            D+            C GDSGG ++ + ++ W+L G+ S
Sbjct: 173 AGYEEGGI------------DS------------CQGDSGGPLMCQENNRWFLAGVTS 206

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 86.1 bits (214), Expect = 9e-20
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
           T    V   +  + I P +N      DIA++ L   V+Y+ Y++P+ L            
Sbjct: 66  TSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISL-----PEENQVF 120

Query: 305 VEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
             GR+ ++ GWG        ++ L+ A +P++S+++C     Q      ++   CAG+  
Sbjct: 121 PPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERC---QQQMPEYNITENMICAGYEE 177

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  133 bits (336), Expect = 4e-37
 Identities = 56/238 (23%), Positives = 85/238 (35%), Gaps = 62/238 (26%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +++ G+WPW V+L + +     ++CGGSL+   +V+TAAHC    P       D   I
Sbjct: 4   GTESSWGEWPWQVSL-QVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLP-----LQDVWRI 57

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           Y G                Q+K + I+  +  S    DIAL++L + ++Y+ + +P+ L 
Sbjct: 58  YSGILELS--DITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLP 115

Query: 142 ----------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
                           W    +       L  V         C        +        
Sbjct: 116 SKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKIT--QRMVC 173

Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           A Y  G              D             C GDSGG +V K +  W L GI S
Sbjct: 174 AGYKEGGK------------DA------------CKGDSGGPLVCKHNGMWRLVGITS 207

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 83.8 bits (208), Expect = 6e-19
 Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 240 LRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 299
           L + D      F+ +K + I+  +  S    DIAL++L + ++Y+ + +P+ L       
Sbjct: 62  LELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTS 121

Query: 300 LQLSAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
                    +  V GWG+  E   +   L+   +P+V++++C     ++     +    C
Sbjct: 122 T-----IYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEEC---QKRYQDYKITQRMVC 173

Query: 359 AGF 361
           AG+
Sbjct: 174 AGY 176

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  132 bits (335), Expect = 5e-37
 Identities = 57/212 (26%), Positives = 84/212 (39%), Gaps = 55/212 (25%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G+WPW V+L+        ++CG SL+S N++++AAHC       +  D      
Sbjct: 4   GTDADEGEWPWQVSLHALGQ---GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           +LG + Q Q     GVQ +++KR+  +P FN   +  DIALL+L    +YS  VRP+ L 
Sbjct: 61  FLGLHDQSQ-RSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLP 119

Query: 142 ----------------W----DDSTAPLQLSAVE----GTSVCN---------------- 161
                           W       T  L L   E      + C                 
Sbjct: 120 DASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGF 179

Query: 162 ---------GDSGGGMV-FKIDSAWYLRGIVS 183
                    GDSGG +   + D   +  G+VS
Sbjct: 180 LSGGVDSCQGDSGGPLSSVEADGRIFQAGVVS 211

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 85.0 bits (211), Expect = 3e-19
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
           +   V    +KR+  +P FN   +  DIALL+L    +YS  VRP+ L D S        
Sbjct: 71  SAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVF----- 125

Query: 305 VEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             G+   V GWG+       +  L+   + +++   C         Q T     C GF
Sbjct: 126 PAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTC---ENLLPQQITPRM-MCVGF 179

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  132 bits (335), Expect = 6e-37
 Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 35/226 (15%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+ T RG  PW V L  ++       CG  L+  ++V+TAAHC+         +S  L++
Sbjct: 4   GKMTRRGDSPWQVVLLDSKK---KLACGAVLIHPSWVLTAAHCM--------DESKKLLV 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG+Y       E    +  +K V ++P ++ S    DIALL L+     S  + P+CL 
Sbjct: 53  RLGEYDLR--RWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLP 110

Query: 143 DDSTAPLQLSAVEGTSVCNG---DSGGGMVFKIDSAWYLRGI-VSITVARDGLRVCDTKH 198
           D   A  +L+     ++  G    S      K +  + L  I + + V  +    C    
Sbjct: 111 DSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPV-VPHN---ECSEVM 166

Query: 199 YVVFTDVANV------------CNGDSGGGMVFKIDSAWYLRGIVS 232
             + ++  N+            C GDSGG MV      W+L G+VS
Sbjct: 167 SNMVSE--NMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVS 210

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 86.5 bits (215), Expect = 9e-20
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 247 HYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE 306
            + +  D+K V ++P ++ S    DIALL L+     S  + P+CL D   A  +L    
Sbjct: 64  KWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAEREL-NQA 122

Query: 307 GRDGTVIGWGY------DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
           G++  V GWGY      +     +  L    +P+V H +C   +    +  + +   CAG
Sbjct: 123 GQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNEC---SEVMSNMVSEN-MLCAG 178

Query: 361 FRN 363
              
Sbjct: 179 ILG 181

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  137 bits (346), Expect = 6e-37
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 27/230 (11%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G  PW V L+R        +CG SL+S  +V+TAAHC+   P+DK    + L++
Sbjct: 169 GSDAEIGMSPWQVMLFRKS--PQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV 226

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCL 141
            +GK+ + +  +    +   +++++I+P +N   N   DIAL++L   V +S Y+ PVCL
Sbjct: 227 RIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 285

Query: 142 WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSI----TVARDGLRVCDTK 197
            D  TA   L A     V    +G G + +  +A   +G  S+     +      VC   
Sbjct: 286 PDRETAASLLQAGYKGRV----TGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 341

Query: 198 HYVVFTD-------VANV------CNGDSGGGMVFK--IDSAWYLRGIVS 232
             +  TD         +       C GDSGG  V K   ++ WY  GIVS
Sbjct: 342 TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 391

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 90.3 bits (224), Expect = 3e-20
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 14/127 (11%)

Query: 244 DTKHYVVFTDVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
             ++    + +++++I+P +N   N   DIAL++L   V +S Y+ PVCL D  TA   L
Sbjct: 236 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLL 295

Query: 303 SAVEGRDGTVIGWGY-------DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDE 355
            A  G  G V GWG        +        L++  +PIV    C         + T + 
Sbjct: 296 QA--GYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC---KDSTRIRITDNM 350

Query: 356 TFCAGFR 362
            FCAG++
Sbjct: 351 -FCAGYK 356

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  136 bits (344), Expect = 7e-37
 Identities = 57/280 (20%), Positives = 101/280 (36%), Gaps = 48/280 (17%)

Query: 1   MCYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVI 60
               +  CG  +  +    V+ G +      PW   L   +     ++CGG+++S  Y++
Sbjct: 104 FKDENFDCGNFLSQR----VSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYIL 159

Query: 61  TAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSD----------EGGVQNKQVKRVHIYP 110
           TAAHCV          +D   I LG++      D             V N  +++  I+ 
Sbjct: 160 TAAHCVHGLQ------NDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHE 213

Query: 111 TFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVF 170
            +++ + + DIALL+L+  V +  +++P+CL        +   +    V    +G G   
Sbjct: 214 KYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFV----TGWGTTE 269

Query: 171 KIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTD---------VANVCNGDSGGGMVFKI 221
              S+  L       V       C   +               + + C GDSGG +    
Sbjct: 270 NGSSSDVLL---QANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPA 326

Query: 222 DSA------WYLRGIVSITVARDGLRVCDTKHY-VVFTDV 254
                        GIVS      G+  C       ++T+V
Sbjct: 327 QYLGEYAPKMVEFGIVSQ-----GVVTCGQISLPGLYTNV 361

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 93.8 bits (233), Expect = 2e-21
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 234 TVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 293
              +   + C      V   +++  I+  +++ + + DIALL+L+  V +  +++P+CL 
Sbjct: 188 CRQQGRKKKCAPPVVNV--GIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLP 245

Query: 294 DDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTS 353
                 L+  A +     V GWG  EN   S+ L  A +P+     C     Q + +   
Sbjct: 246 ITDE--LKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACS----QAYRRAVP 299

Query: 354 DETFCAGFRN 363
               C G  +
Sbjct: 300 LSQLCVGGGD 309

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  131 bits (333), Expect = 9e-37
 Identities = 57/238 (23%), Positives = 85/238 (35%), Gaps = 62/238 (26%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L  T      ++CGGS++   +++TAAHC              L +
Sbjct: 4   GTASVRGEWPWQVTL-HTTSPTQRHLCGGSIIGNQWILTAAHCFYGVE-----SPKILRV 57

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           Y G  +Q     +       V+ + I+  +  +    DIALL+L + V+Y+   RP+ L 
Sbjct: 58  YSGILNQS--EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP 115

Query: 142 ----------------W-----DDSTAP-LQLSAVE--GTSVCNGDSGGGMVFKIDS--- 174
                           W      D     LQ + +       C     G  +        
Sbjct: 116 SKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT--HKMIC 173

Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           A Y  G              D             C GDSGG +  K +  W+L GI S
Sbjct: 174 AGYREGGK------------DA------------CKGDSGGPLSCKHNEVWHLVGITS 207

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 82.3 bits (204), Expect = 2e-18
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
           + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+ L           
Sbjct: 66  EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISL-----PSKGER 120

Query: 304 AVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            V   D  V GWGY    D++   L+ A +P+V++++C     ++     + +  CAG+
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGY 176

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  132 bits (333), Expect = 1e-36
 Identities = 55/246 (22%), Positives = 87/246 (35%), Gaps = 66/246 (26%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKP-------- 74
           G+   +G  PW   L    G      CGGSL+  ++++TAAHC+ +    K         
Sbjct: 4   GRPAQKGTTPWIAMLSHLNG---QPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60

Query: 75  VDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM 134
           +      I LGK+ + +   +   Q+  VK   ++P ++ + +  D+AL++L      + 
Sbjct: 61  LSPSDFKIILGKHWRLR--SDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNA 118

Query: 135 YVRPVCL---------------W-----DDSTAPLQLSAVE--GTSVCNGDSGGGMVFKI 172
           +V P+CL               W           L    +     S C   +   +  K+
Sbjct: 119 FVMPICLPEGPQQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQ-KAYAPLKKKV 177

Query: 173 DS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMV--FKIDSAWY 226
                 A    G              D             C GDSGG MV   +    WY
Sbjct: 178 TRDMICAGEKEGGK------------DA------------CAGDSGGPMVTLNRERGQWY 213

Query: 227 LRGIVS 232
           L G VS
Sbjct: 214 LVGTVS 219

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score = 93.5 bits (233), Expect = 2e-22
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
                VK   ++P ++ + +  D+AL++L      + +V P+CL +            G 
Sbjct: 82  EQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQE-------GA 134

Query: 309 DGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
              V GWG     R  E L    +PIV H  C  +      + T D   CAG + 
Sbjct: 135 MVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDM-ICAGEKE 188

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  131 bits (333), Expect = 2e-36
 Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 36/227 (15%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+   +G+ PW V L      N + +CGG+L++  +V++AAHC      DK  +   L+ 
Sbjct: 4   GKVCPKGECPWQVLLLV----NGAQLCGGTLINTIWVVSAAHCF-----DKIKNWRNLIA 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG++   +   +G  Q+++V +V I  T+       DIALL+L   V  + +V P+CL 
Sbjct: 55  VLGEHDLSE--HDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLP 112

Query: 143 DDSTAPLQLSAVEGTSVCNGDSG-GGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVV 201
           + + +   L+ V  + V    SG G ++ +  +A  L   +++       + C  +    
Sbjct: 113 ERTFSERTLAFVRFSLV----SGWGQLLDRGATALELMV-LNVPRLMT--QDCL-QQSRK 164

Query: 202 FTDVANV----------------CNGDSGGGMVFKIDSAWYLRGIVS 232
             D  N+                C GDSGG         WYL GIVS
Sbjct: 165 VGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVS 211

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
               V +V I  T+       DIALL+L   V  + +V P+CL + + +   L+    R 
Sbjct: 69  QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAF--VRF 126

Query: 310 GTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFT-SDETFCAGFRN 363
             V GWG   +    + EL +  +P +  Q CL  + +       ++  FCAG+ +
Sbjct: 127 SLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSD 182

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  131 bits (331), Expect = 2e-36
 Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 63/239 (26%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +    ++PW V++ R    + S+ CGGS+++  +V+ AAHC+      +      + +
Sbjct: 4   GIEARPYEFPWQVSVRRKS--SDSHFCGGSIINDRWVVCAAHCM------QGEAPALVSL 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G++     +     Q   V  + +   ++ +    D+++++ +  + + + V P+C  
Sbjct: 56  VVGEHDSS--AASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAP 113

Query: 142 ---------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
                          W          P  L  V       + C+       ++  D    
Sbjct: 114 DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIY--DDMIC 171

Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFK-IDSAWYLRGIVS 232
           A    G+             D+            C GDSGG +  K     + L GIVS
Sbjct: 172 ATDNTGMTDR----------DS------------CQGDSGGPLSVKDGSGIFSLVGIVS 208

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 81.9 bits (203), Expect = 3e-18
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 11/118 (9%)

Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
                DV  + +   ++ +    D+++++ +  + + + V P+C       P   +    
Sbjct: 68  VRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICA------PDPANDYVY 121

Query: 308 RDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
           R     GWG   +        L+   + I ++  C   +  + S    D+  CA    
Sbjct: 122 RKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFC---DAVYTSDTIYDDMICATDNT 176

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  135 bits (341), Expect = 2e-36
 Identities = 56/266 (21%), Positives = 92/266 (34%), Gaps = 70/266 (26%)

Query: 8   CGTVVYNKAQPLVTYGQKTAR-GQWPWHVALYRTEGINLS----YVCGGSLVSVNYVITA 62
           CG          +T     A  G++PW VA+ +   I  S     VCGGSL++ + V+T 
Sbjct: 118 CGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTG 177

Query: 63  AHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIA 122
           AHCV         + D + I  G++      +    Q +++++V I+  FN    + D+A
Sbjct: 178 AHCV----NSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVA 233

Query: 123 LLQLSSDVDYSMYVRPVCL----------------W------DDSTAPLQLSAVE----G 156
           LL L   +  +  +  +CL                W              L  ++     
Sbjct: 234 LLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVD 293

Query: 157 TSVCN---GDSGGGMVFKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC 209
              C     ++  G+ F +D     A   +G              DT            C
Sbjct: 294 RDKCQADLRNTRLGLKFVLDQTFVCAGGEQGK-------------DT------------C 328

Query: 210 NGDSGGGMVFKI---DSAWYLRGIVS 232
            GD G  +        S +   GIV+
Sbjct: 329 TGDGGSPLFCPDPRNPSRYMQMGIVA 354

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score = 89.1 bits (221), Expect = 7e-20
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 12/115 (10%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
            +++V I+  FN    + D+ALL L   +  +  +  +CL      P Q    +  +   
Sbjct: 213 KIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICL------PQQSQIFDSTECFA 266

Query: 313 IGWGYDEND---RVSEELKMAIMPIVSHQQC--LWSNPQFFSQFTSDETF-CAGF 361
            GWG  E     R S  LK   +P V   +C     N +   +F  D+TF CAG 
Sbjct: 267 SGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG 321

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  131 bits (331), Expect = 3e-36
 Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 60/212 (28%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+      WPW ++L         + CGG+L++ N+V+TAAHC+         ++ T  +
Sbjct: 17  GEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI--------SNTLTYRV 68

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LGK +  +  DE G     V  + ++  +NS     DIAL++L+  V+    ++  CL 
Sbjct: 69  ALGK-NNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLP 127

Query: 142 ----------------W------DDSTAPLQLSAV------------------------- 154
                           W          A LQ                             
Sbjct: 128 SEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCA 187

Query: 155 --EG-TSVCNGDSGGGMVFKIDSAWYLRGIVS 183
             +G  S CNGDSGG +  + D  W +RGIVS
Sbjct: 188 GGDGVISACNGDSGGPLNCQADGQWDVRGIVS 219

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 81.1 bits (201), Expect = 7e-18
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
            +   ++  V  + ++  +NS     DIAL++L+  V+    ++  CL  + +       
Sbjct: 79  DEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLL----- 133

Query: 305 VEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            +     V GWG    N  ++ EL+  + P+V +  C  S   ++     +   CAG 
Sbjct: 134 PQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATC--SQRDWWGTTVKETMVCAGG 189

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
           CNGDSGG +  + D  W +RGIVS
Sbjct: 196 CNGDSGGPLNCQADGQWDVRGIVS 219

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  129 bits (327), Expect = 9e-36
 Identities = 53/246 (21%), Positives = 80/246 (32%), Gaps = 63/246 (25%)

Query: 23  GQKTARGQWPWHVALYR--TEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTL 80
           G        PW  A++          ++CGG L+S  ++++AAHC  ++          L
Sbjct: 4   GLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERF-----PPHHL 58

Query: 81  VIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSD----VDYSMYV 136
            + LG+ ++         Q  +V++  ++  F+   Y  DIALLQL SD       S  V
Sbjct: 59  TVILGRTYRV--VPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVV 116

Query: 137 RPVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVF 170
           R VCL                 +            +L         +S C          
Sbjct: 117 RTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNR-- 174

Query: 171 KIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWY 226
            +      A   R         D                   C GDSGG +V   D    
Sbjct: 175 TVTDNMLCAGDTRSGGPQANLHDA------------------CQGDSGGPLVCLNDGRMT 216

Query: 227 LRGIVS 232
           L GI+S
Sbjct: 217 LVGIIS 222

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPL 300
                   +V++  ++  F+   Y  DIALLQL SD       S  VR VCL      P 
Sbjct: 70  PGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCL-----PPA 124

Query: 301 QLSAVEGRDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
            L   +  +  + G+G  E      SE LK A + +    +C  ++    ++  +D   C
Sbjct: 125 DLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRC--TSQHLLNRTVTDNMLC 182

Query: 359 AGF 361
           AG 
Sbjct: 183 AGD 185

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  128 bits (324), Expect = 2e-35
 Identities = 54/263 (20%), Positives = 88/263 (33%), Gaps = 67/263 (25%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   + G++PW ++  + +  + S+ CG SL+S    ++A+HCV        V  + + +
Sbjct: 4   GTNASPGEFPWQLSQ-QRQSGSWSHSCGASLLSSTSALSASHCV------DGVLPNNIRV 56

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVC 140
             G     Q SD  G Q   V    ++  + +   +Y  DIA+L L++ +     ++   
Sbjct: 57  IAGL---WQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAV 113

Query: 141 L-----------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS- 174
           L                 W      +  P  L         T+ C     G     I   
Sbjct: 114 LPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDN 173

Query: 175 ---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIV 231
                   G                            CNGDSGG +    D    + G+ 
Sbjct: 174 HICVQDPAGNTG------------------------ACNGDSGGPLNCP-DGGTRVVGVT 208

Query: 232 SITVARDGLRVCDTKHYVVFTDV 254
           S  V   GL  C   +  V+T V
Sbjct: 209 SW-VVSSGLGACLPDYPSVYTRV 230

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 81.5 bits (202), Expect = 5e-18
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 250 VFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
              +V    ++  + +   +Y  DIA+L L++ +     ++   L  ++          G
Sbjct: 70  QTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNND-----YAG 124

Query: 308 RDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
               + GWG  D  + + + L+ + +P+++  QC  +          D   C   
Sbjct: 125 TTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQD 179

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  127 bits (322), Expect = 4e-35
 Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 62/213 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+      WPW ++L    G +  + CGGSL+   +V+TAAHCV          + T  +
Sbjct: 4   GRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCV--------DSARTWRV 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVRPVC 140
            LG+++ +  ++EG  Q   V  V I+  +NS +  G  DIALL+L++    +  V+   
Sbjct: 56  VLGEHNLN--TNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAA 113

Query: 141 L-----------------W------DDSTAPLQLSAV----------------------- 154
           L                 W         +  L+ + +                       
Sbjct: 114 LPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMV 173

Query: 155 ----EGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
                  S CNGDSGG +  +++ ++Y+ G+ S
Sbjct: 174 CAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTS 206

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 248 YVVFTDVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAV 305
                 V  V I+  +NS +  G  DIALL+L++    +  V+   L   +         
Sbjct: 68  KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQIL-----P 122

Query: 306 EGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
                 + GWG       +S+ LK A +P V H  C  S+  ++         CAG
Sbjct: 123 NNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATC--SSSGWWGSTVKTTMVCAG 176

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
           CNGDSGG +  +++ ++Y+ G+ S
Sbjct: 183 CNGDSGGPLNCQVNGSYYVHGVTS 206

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  126 bits (320), Expect = 1e-34
 Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 63/210 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++   G WPW V+L    G    + CGGSL++ N+V+TAAHC               V+
Sbjct: 19  GEEAVPGSWPWQVSLQDKTG---FHFCGGSLINENWVVTAAHCGVTTSD---------VV 66

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
             G++ Q   S    +Q  ++ +V     +NS     DI LL+LS+   +S  V  VCL 
Sbjct: 67  VAGEFDQG--SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLP 124

Query: 142 ----------------W-------DDSTAPLQLSAV------------------------ 154
                           W        ++   LQ +++                        
Sbjct: 125 SASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAG 184

Query: 155 -EGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
             G S C GDSGG +V K + AW L GIVS
Sbjct: 185 ASGVSSCMGDSGGPLVCKKNGAWTLVGIVS 214

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 11/114 (9%)

Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
           +    + +V     +NS     DI LL+LS+   +S  V  VCL   S          G 
Sbjct: 80  IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDF-----AAGT 134

Query: 309 DGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
                GWG     N    + L+ A +P++S+  C      + ++       CAG
Sbjct: 135 TCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNC---KKYWGTKIKDAM-ICAG 184

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 15/24 (62%), Positives = 17/24 (70%)

Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
           C GDSGG +V K + AW L GIVS
Sbjct: 191 CMGDSGGPLVCKKNGAWTLVGIVS 214

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  126 bits (318), Expect = 1e-34
 Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 75/243 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+    GQ+PW V L       +   CGGS+V+  +++TAAHCV             + +
Sbjct: 4   GEDAKPGQFPWQVVLNG----KVDAFCGGSIVNEKWIVTAAHCVE--------TGVKITV 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVC 140
             G+++      E   Q + V R+  +  FN++   Y  DIALL+L   +  + YV P+C
Sbjct: 52  VAGEHNIE--ETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPIC 109

Query: 141 L-------------------W----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKID 173
           +                   W        + L L  +       + C   +       I 
Sbjct: 110 IADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKF----TIT 165

Query: 174 S----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRG 229
           +    A +  G              D+            C GDSGG  V +++   +L G
Sbjct: 166 NNMFCAGFHEGGR------------DS------------CQGDSGGPHVTEVEGTSFLTG 201

Query: 230 IVS 232
           I+S
Sbjct: 202 IIS 204

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 83.8 bits (208), Expect = 5e-19
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
           T+H     +V R+  +  FN++   Y  DIALL+L   +  + YV P+C+ D     + L
Sbjct: 61  TEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFL 120

Query: 303 SAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
                  G V GWG      R +  L+   +P+V    C           T++  FCAGF
Sbjct: 121 K---FGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATC---LRSTKFTITNNM-FCAGF 173

Query: 362 RN 363
             
Sbjct: 174 HE 175

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  132 bits (334), Expect = 2e-34
 Identities = 61/260 (23%), Positives = 89/260 (34%), Gaps = 64/260 (24%)

Query: 2   CYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVIT 61
             R          K +P +  G  + RG+WPW V L  T      ++CGGS++   +++T
Sbjct: 370 TLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTL-HTTSPTQRHLCGGSIIGNQWILT 428

Query: 62  AAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDI 121
           AAHC              L +Y G  +Q     +       V+ + I+  +  +    DI
Sbjct: 429 AAHCFYGVE-----SPKILRVYSGILNQS--EIKEDTSFFGVQEIIIHDQYKMAESGYDI 481

Query: 122 ALLQLSSDVDYSMYVRPVCL-----------------W----DDSTAPLQLSAVE----G 156
           ALL+L + V+Y+   RP+CL                 W            L   +     
Sbjct: 482 ALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVT 541

Query: 157 TSVCNGDSGGGMVFKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGD 212
              C     G    KI      A Y  G              D             C GD
Sbjct: 542 NEECQKRYRGH---KITHKMICAGYREGGK------------DA------------CKGD 574

Query: 213 SGGGMVFKIDSAWYLRGIVS 232
           SGG +  K +  W+L GI S
Sbjct: 575 SGGPLSCKHNEVWHLVGITS 594

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 84.1 bits (208), Expect = 6e-18
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
           + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+CL       +   
Sbjct: 453 EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNV--- 509

Query: 304 AVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
                D  V GWGY    D++   L+ A +P+V++++C     ++     + +  CAG+R
Sbjct: 510 --IYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGYR 564

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  125 bits (317), Expect = 3e-34
 Identities = 55/247 (22%), Positives = 91/247 (36%), Gaps = 70/247 (28%)

Query: 23  GQKTARGQWPWHVAL-YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G+ T     PW  A+  R  G +++YVCGGSL+S  +VI+A HC    P       +  +
Sbjct: 4   GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYI 58

Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMY 135
           +YLG+   +  S+  G    +V+ + ++  +++    +  DIALL++ S        S  
Sbjct: 59  VYLGRSRLN--SNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116

Query: 136 VRPVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMV 169
           ++ + L                 +      D   P QL            C      G  
Sbjct: 117 IQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYG-- 174

Query: 170 FKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAW 225
            ++ +    A   +               D+            C GDSGG +V  +    
Sbjct: 175 SEVTTKMLCAADPQWKT------------DS------------CQGDSGGPLVCSLQGRM 210

Query: 226 YLRGIVS 232
            L GIVS
Sbjct: 211 TLTGIVS 217

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMYVRPVCLWDDSTA 298
                +  +V+ + ++  +++    +  DIALL++ S        S  ++ + L      
Sbjct: 69  NTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISL-----P 123

Query: 299 PLQLSAVEGRDGTVIGWGY-DENDRV-SEELKMAIMPIVSHQQCLWSNPQFFSQFTSDET 356
            +      G    + G+G  +  D +  E+LKM ++ ++SH++C    P ++    + + 
Sbjct: 124 SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHREC--QQPHYYGSEVTTKM 181

Query: 357 FCAGF 361
            CA  
Sbjct: 182 LCAAD 186

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  125 bits (316), Expect = 3e-34
 Identities = 51/243 (20%), Positives = 83/243 (34%), Gaps = 67/243 (27%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V              GG+L+   +++TAAH +  K   +   + +L +
Sbjct: 4   GQKAKMGNFPWQVFTNI------HGRGGGALLGDRWILTAAHTLYPKE-HEAQSNASLDV 56

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPV 139
           +LG  +  +        N  ++RV ++P +    S N+ GDIALL+L + V     + P+
Sbjct: 57  FLGHTNVEELMKL---GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 113

Query: 140 CL-----------------W----DDSTAPLQLSAVE--GTSVCNGD-SGGGMVFKIDS- 174
           CL                 +    +     L+   +       C     G   +      
Sbjct: 114 CLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQN 173

Query: 175 ---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA--WYLRG 229
              A +                 D             C GDSGG    +  +   W   G
Sbjct: 174 MFCAGHPSLKQ------------DA------------CQGDSGGVFAVRDPNTDRWVATG 209

Query: 230 IVS 232
           IVS
Sbjct: 210 IVS 212

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)

Query: 254 VKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           ++RV ++P +    S N+ GDIALL+L + V     + P+CL D+ T         G  G
Sbjct: 74  IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFY-----DLGLMG 128

Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQCL-WSNPQFFSQFTSDETFCAGFRN 363
            V G+G    ++++ +L+   +P+ + Q C  W   +      S   FCAG  +
Sbjct: 129 YVSGFGV-MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 181

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  125 bits (316), Expect = 4e-34
 Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 63/214 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +  R  WP  ++L    G + ++ CGG+L+  N+V+TAAHCV            T  +
Sbjct: 4   GTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV--------DRELTFRV 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVRPVC 140
            +G+++ +   + G  Q   V+++ ++P +N+ +     DIALL+L+  V  + YV+   
Sbjct: 56  VVGEHNLN--QNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGV 113

Query: 141 L-----------------W-----DDSTAP-LQLSAV----------------------- 154
           L                 W     +   A  LQ + +                       
Sbjct: 114 LPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMV 173

Query: 155 ----EG-TSVCNGDSGGGMVFKIDSAWYLRGIVS 183
               +G  S C GDSGG +   ++  + + G+ S
Sbjct: 174 CAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTS 207

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 248 YVVFTDVKRVHIYPTFNSSNYLG--DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAV 305
              +  V+++ ++P +N+ +     DIALL+L+  V  + YV+   L             
Sbjct: 68  TEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVL-----PRAGTILA 122

Query: 306 EGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
                 + GWG    N ++++ L+ A +P V +  C  S+  ++     +   CAG 
Sbjct: 123 NNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAIC--SSSSYWGSTVKNSMVCAGG 177

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
           C GDSGG +   ++  + + G+ S
Sbjct: 184 CQGDSGGPLHCLVNGQYAVHGVTS 207

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  124 bits (314), Expect = 4e-34
 Identities = 56/238 (23%), Positives = 86/238 (36%), Gaps = 73/238 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G+ PW   L   E       CGG+++S  Y++TAAHC+ +             +
Sbjct: 4   GYNCKDGEVPWQALLINEEN---EGFCGGTILSEFYILTAAHCLYQAKR--------FKV 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            +G  +  Q  +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P  L 
Sbjct: 53  RVGDRNTEQ--EEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP 110

Query: 142 --------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS---- 174
                         W       +  P +L  ++      + C     G    KI S    
Sbjct: 111 TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG----KITSNMFC 166

Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
             +L G              D+            C GDSGG +V        L+G+VS
Sbjct: 167 VGFLEGGK------------DS------------CQGDSGGPVVCN----GQLQGVVS 196

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
              +V+ V  +  F    Y  DIA+L+L + + + M V P  L     A        G  
Sbjct: 67  AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPAT-------GTK 119

Query: 310 GTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
             + GWG          +EL+    P++S  +C  S P    + TS+  FC GF  
Sbjct: 120 CLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYP---GKITSN-MFCVGFLE 171

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  130 bits (327), Expect = 6e-34
 Identities = 45/266 (16%), Positives = 81/266 (30%), Gaps = 66/266 (24%)

Query: 8   CGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVT 67
           CG V  +         + T   + PW   +           C G++VS  +V+TAAHC T
Sbjct: 211 CGMVWEH--------RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFT 262

Query: 68  KKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---------NYL 118
                      ++ + +G             ++ +++ V  +P +N +          Y 
Sbjct: 263 VDD-----KEHSIKVSVGGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYD 307

Query: 119 GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL 178
            D+AL++L + + Y   +RP+CL         L     T+         ++   D     
Sbjct: 308 YDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTC--QQQKEELLPAQDIKALF 365

Query: 179 RGIVSIT--------VARDGLRVCDTKHYVVFTDVANV---------------------- 208
                             D    C+                                   
Sbjct: 366 VSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADP 425

Query: 209 --CNGDSGGGMVFKIDSAWYLRGIVS 232
             C GDSGG ++    S +   G++S
Sbjct: 426 NTCRGDSGGPLIVHKRSRFIQVGVIS 451

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 65.3 bits (159), Expect = 7e-12
 Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 28/139 (20%)

Query: 253 DVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
           +++ V  +P +N +          Y  D+AL++L + + Y   +RP+CL         L 
Sbjct: 282 EIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR 341

Query: 304 AVEGRDGTVIGWGYDENDRV--------SEELKMAIMPIVSHQQC-----------LWSN 344
                              +         ++L    + I +  +             +  
Sbjct: 342 LPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDK 401

Query: 345 PQFFSQFTSDETFCAGFRN 363
            +  S+  +    C G  +
Sbjct: 402 VKDISEVVTPRFLCTGGVS 420

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  125 bits (315), Expect = 7e-34
 Identities = 64/245 (26%), Positives = 90/245 (36%), Gaps = 70/245 (28%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     GQWPW V++   EG    +VCGGSLVS  +V++AAHC            +   +
Sbjct: 4   GSSAVAGQWPWQVSI-TYEG---VHVCGGSLVSEQWVLSAAHCF-----PSEHHKEAYEV 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG +     S     +   +K +  +P++      GDIALLQLS  + +S Y+RP+ L 
Sbjct: 55  KLGAHQLD--SYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112

Query: 142 ----------------W------DDSTAPLQLSAVE----GTSVCN----GDSGGGMVFK 171
                           W           P  L  +E        CN     D+       
Sbjct: 113 AAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHF 172

Query: 172 IDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYL 227
           +      A Y+ G                            C GDSGG +   ++  WYL
Sbjct: 173 VQEDMVCAGYVEGGKDA------------------------CQGDSGGPLSCPVEGLWYL 208

Query: 228 RGIVS 232
            GIVS
Sbjct: 209 TGIVS 213

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
               + +K +  +P++      GDIALLQLS  + +S Y+RP+ L        Q S   G
Sbjct: 67  DAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL-----PAAQASFPNG 121

Query: 308 RDGTVIGWG---YDENDRVSEELKMAIMPIVSHQQC-----LWSNPQFFSQFTSDETFCA 359
              TV GWG      +    + L+   +P++S + C     + + P+       D   CA
Sbjct: 122 LHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDM-VCA 180

Query: 360 GF 361
           G+
Sbjct: 181 GY 182

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  123 bits (312), Expect = 9e-34
 Identities = 52/232 (22%), Positives = 77/232 (33%), Gaps = 69/232 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +     WP   AL+    I+  Y CGGSL+S  +++TAAHC+          +  + +
Sbjct: 4   GVEAVPNSWPHQAALF----IDDMYFCGGSLISPEWILTAAHCM--------DGAGFVDV 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG ++     DE      Q     ++  +NS     DIA+++L   V  +  +  V L 
Sbjct: 52  VLGAHNI--REDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP 109

Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
                         W             L  V+                           
Sbjct: 110 STDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDSTG 169

Query: 156 GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN 207
           G   CNGDSGG +           GI S   A  G   C+  +   FT V  
Sbjct: 170 GKGTCNGDSGGPLN----YNGLTYGITSF-GAAAG---CEAGYPDAFTRVTY 213

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 75.3 bits (186), Expect = 5e-16
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
           V        ++  +NS     DIA+++L   V  +  +  V L              G  
Sbjct: 66  VTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGV-------GTV 118

Query: 310 GTVIGWG--YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            T  GWG   D    +S+ L+   +PI+S+  C            +D   C   
Sbjct: 119 VTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIV-----TDGNICIDS 167

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  123 bits (312), Expect = 1e-33
 Identities = 59/238 (24%), Positives = 89/238 (37%), Gaps = 70/238 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G       WPW V+L    G    + CGG+L+S  +V+TAAHC+     +K     +  +
Sbjct: 21  GCVAHPHSWPWQVSLRTRFG---MHFCGGTLISPEWVLTAAHCL-----EKSPRPSSYKV 72

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG + +   + E  VQ  +V R+ + PT        DIALL+LSS    +  V P CL 
Sbjct: 73  ILGAHQEV--NLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLP 124

Query: 142 ----------------W-----DDSTAPLQLSAVE--GTSVCNGDSGGGMVFKIDS---- 174
                           W           L+ + +      VCN         ++ S    
Sbjct: 125 SPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLN--GRVQSTELC 182

Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           A +L G              D+            C GD+GG +V      + L+G+ S
Sbjct: 183 AGHLAGGT------------DS------------CQGDAGGPLVCFEKDKYILQGVTS 216

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 75.7 bits (187), Expect = 6e-16
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
           +V   +V R+ + PT        DIALL+LSS    +  V P CL             + 
Sbjct: 85  HVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACL-----PSPNYVVADR 133

Query: 308 RDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            +  + GWG  +    +  LK A +P++ ++ C  +  +F +        CAG 
Sbjct: 134 TECFITGWGETQGTFGAGLLKEAQLPVIENKVC--NRYEFLNGRVQSTELCAGH 185

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  124 bits (314), Expect = 2e-33
 Identities = 39/233 (16%), Positives = 70/233 (30%), Gaps = 31/233 (13%)

Query: 7   SCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
            C          L +  +       PW V L  +EG      CGG ++  N+V+T A C 
Sbjct: 40  QCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEG---KDFCGGVIIRENFVLTTAKCS 96

Query: 67  TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQL 126
                        + +                   ++  VH++  +++     D++LL+L
Sbjct: 97  LL--------HRNITVKTYFNRT-----SQDPLMIKITHVHVHMRYDADAGENDLSLLEL 143

Query: 127 SSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
              +       PVC  +   A   L       +    SG       D    L     +T+
Sbjct: 144 EWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLL----SGWARN-GTDLGNSLTT-RPVTL 197

Query: 187 ARDGLRVCDTKHYVVFTDV-------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                  C     V  T             +   G  +  +   +W+L G++ 
Sbjct: 198 VEG--EECGQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLG 248

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           +  VH++  +++     D++LL+L   +       PVC  +   A   L       G + 
Sbjct: 120 ITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIP--RTRGLLS 177

Query: 314 GWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
           GW       +   L    + +V  ++C           T+  T+C  
Sbjct: 178 GWAR-NGTDLGNSLTTRPVTLVEGEEC---GQVLNVTVTTR-TYCER 219

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  122 bits (309), Expect = 2e-33
 Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 70/210 (33%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G        P+ V+L         + CGGSL++  +V++AAHC              + +
Sbjct: 4   GYTCGANTVPYQVSLNSG-----YHFCGGSLINSQWVVSAAHCYKSG----------IQV 48

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG+ +      EG  Q     +  ++P++NS+    DI L++L S    +  V  + L 
Sbjct: 49  RLGEDNI--NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106

Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
                         W       ++ P  L  ++                           
Sbjct: 107 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYL 166

Query: 156 --GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
             G   C GDSGG +V     +  L+GIVS
Sbjct: 167 EGGKDSCQGDSGGPVV----CSGKLQGIVS 192

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 75.2 bits (186), Expect = 5e-16
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
            F    +  ++P++NS+    DI L++L S    +  V  + L     +        G  
Sbjct: 63  QFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASA-------GTQ 115

Query: 310 GTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
             + GWG          + LK    PI+S   C      +  Q TS+  FCAG+  
Sbjct: 116 CLISGWGNTKSSGTSYPDVLKCLKAPILSDSSC---KSAYPGQITSN-MFCAGYLE 167

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  123 bits (310), Expect = 3e-33
 Identities = 51/245 (20%), Positives = 80/245 (32%), Gaps = 73/245 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  +  G  PW  A+Y          C GSLV   +V++AAHC +  P       D++ +
Sbjct: 4   GSSSLPGSHPWLAAIYIG-----DSFCAGSLVHTCWVVSAAHCFSHSP-----PRDSVSV 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN-YLGDIALLQLSSD----VDYSMYVR 137
            LG++  +        Q   +++   Y  ++  N    D+ L++L          S +V+
Sbjct: 54  VLGQHFFN--RTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQ 111

Query: 138 PVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFK 171
           P+CL                 W     + S     L            C+     G    
Sbjct: 112 PICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG--AD 169

Query: 172 IDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYL 227
           I      A Y                 D             C GDSGG +  + +   YL
Sbjct: 170 ISPNMLCAGYFDCKS------------DA------------CQGDSGGPLACEKNGVAYL 205

Query: 228 RGIVS 232
            GI+S
Sbjct: 206 YGIIS 210

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 72.3 bits (178), Expect = 8e-15
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 14/124 (11%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSN-YLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAP 299
           T        +++   Y  ++  N    D+ L++L          S +V+P+CL       
Sbjct: 63  TTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICL-----PE 117

Query: 300 LQLSAVEGRDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETF 357
              +   G    + GWG+ + +    S  L+ A++P+V+  +C  S+P+ +    S    
Sbjct: 118 PGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC--SSPEVYGADISPNML 175

Query: 358 CAGF 361
           CAG+
Sbjct: 176 CAGY 179

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  124 bits (312), Expect = 4e-33
 Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 65/246 (26%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSY--VCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTL 80
           GQ  A G WPW V+L      N     VCGGSL++  +++TAAHC   K           
Sbjct: 4   GQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKK-----KVTDW 58

Query: 81  VIYLGKYHQHQFSD---EGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVR 137
            +  G       ++   +  +Q + V+++ I+  +++S+   DIAL++++  V    ++ 
Sbjct: 59  RLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIG 118

Query: 138 PVCL------------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVF 170
           P CL                  W     +       L           +CN         
Sbjct: 119 PGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRI 178

Query: 171 KIDS--AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMV--FKIDSAWY 226
           +  +  A Y  G +            DT            C GDSGG ++     ++++ 
Sbjct: 179 RSTNVCAGYPEGKI------------DT------------CQGDSGGPLMCKDSAENSYV 214

Query: 227 LRGIVS 232
           + GI S
Sbjct: 215 VVGITS 220

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 8/119 (6%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
            K  +    V+++ I+  +++S+   DIAL++++  V    ++ P CL      P +   
Sbjct: 75  VKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPR--- 131

Query: 305 VEGRDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
              +   V GWG+ + +  R S  L+ A + ++    C  ++ ++++        CAG+
Sbjct: 132 -VPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLC--NSTRWYNGRIRSTNVCAGY 187

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  123 bits (311), Expect = 4e-33
 Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 66/225 (29%)

Query: 23  GQKTARGQWPWHVAL-YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           G  T   ++PW   + Y+       + CGGSL++  Y++TAAHCV  +     V      
Sbjct: 26  GDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGR--VLRVVGALNK 83

Query: 82  IYLGKYHQHQFSD---------EGGVQNKQVKRVHIYPTFN--SSNYLGDIALLQLSSDV 130
           + LG+++     D              +  ++    +P +   S +   DIAL++L+  V
Sbjct: 84  VRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQV 143

Query: 131 DYSMYVRPVCLWDDSTAP----------------------LQLSAVEGTS--VCN----- 161
           +++ Y+RPVCL   +                          Q  AV       C      
Sbjct: 144 EFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQCAKTFGA 203

Query: 162 ----------------------GDSGGG-MVFKIDSAWYLRGIVS 183
                                 GDSGG  +  + +  ++L G+VS
Sbjct: 204 AGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLEGLVS 248

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 238 DGLRVCDTKHYVVFTDVKRVHIYPTFN--SSNYLGDIALLQLSSDVDYSMYVRPVCLWDD 295
             +RVC     +    ++    +P +   S +   DIAL++L+  V+++ Y+RPVCL   
Sbjct: 99  GAVRVCVPDKPIDL-GIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQP 157

Query: 296 STAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDE 355
           +          G+  TV+GWG  E  + S   +   +P+V  +QC  +      +     
Sbjct: 158 NEEVQ-----VGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVR-SS 211

Query: 356 TFCAGFR 362
             CAG  
Sbjct: 212 QLCAGGE 218

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  122 bits (308), Expect = 4e-33
 Identities = 59/220 (26%), Positives = 81/220 (36%), Gaps = 69/220 (31%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+  R +WPW V+L R       + CGGSL+   +V+TAAHCV         D  TL +
Sbjct: 4   GQEAPRSKWPWQVSL-RVRDRYWMHFCGGSLIHPQWVLTAAHCV----GPDVKDLATLRV 58

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            L + H          Q   V R+ ++P F       DIALL+L   V+ S  V  V L 
Sbjct: 59  QLREQHL-----YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP 113

Query: 142 ----------------W-----DDSTAP---LQLSAVE--GTSVCN-------------- 161
                           W     D+   P   L+   V      +C+              
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173

Query: 162 ------------------GDSGGGMVFKIDSAWYLRGIVS 183
                             GDSGG +V K++  W   G+VS
Sbjct: 174 IIRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVS 213

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 75.4 bits (186), Expect = 7e-16
 Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
              +      V R+ ++P F       DIALL+L   V+ S  V  V L      P   +
Sbjct: 64  HLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVML-----PPASET 118

Query: 304 AVEGRDGTVIGWG---YDENDRVSEELKMAIMPIVSHQQC--LWSNPQFFSQFTS---DE 355
              G    V GWG    DE       LK   +PI+ +  C   +    +         D+
Sbjct: 119 FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDD 178

Query: 356 TFCAG 360
             CAG
Sbjct: 179 MLCAG 183

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
           C GDSGG +V K++  W   G+VS
Sbjct: 190 CQGDSGGPLVCKVNGTWLQAGVVS 213

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  122 bits (308), Expect = 4e-33
 Identities = 55/233 (23%), Positives = 88/233 (37%), Gaps = 49/233 (21%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V +             G+L+  N+V+TAAH V    Y++  D+  L I
Sbjct: 4   GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAV----YEQKHDASALDI 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            +G   +              + V I+  +   + +  DIAL++L++ V  +  + P+CL
Sbjct: 54  RMGTLKRL----SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 109

Query: 142 WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRG----IVSITVARDGLRVCDTK 197
                A   +   +  +     SG G+  +   A  L      IV           C   
Sbjct: 110 -PRKEAESFMRTDDIGTA----SGWGLTQRGFLARNLMYVDIPIVDHQ-------KCTAA 157

Query: 198 HYVVFTDVANV----------------CNGDSGGGMVFKI--DSAWYLRGIVS 232
           +        +V                C GDSGG +VF       W++ GIVS
Sbjct: 158 YEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVS 210

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score = 90.4 bits (225), Expect = 3e-21
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 245 TKHYVVFTDVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCL-WDDSTAPLQL 302
              +      + V I+  +   + +  DIAL++L++ V  +  + P+CL   ++ + ++ 
Sbjct: 61  LSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMR- 119

Query: 303 SAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQC--LWSNPQFFSQFTSDETFCAG 360
                  GT  GWG  +   ++  L    +PIV HQ+C   +  P +     +    CAG
Sbjct: 120 ---TDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAG 176

Query: 361 FRN 363
             +
Sbjct: 177 LES 179

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  121 bits (307), Expect = 6e-33
 Identities = 40/204 (19%), Positives = 67/204 (32%), Gaps = 62/204 (30%)

Query: 29  GQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
           G  PW V+L   +G    + CGGSLV   +++TA  C         +      ++LG   
Sbjct: 7   GNSPWTVSLRNRQG---QHFCGGSLVKEQWILTARQCF----SSCHMPLTGYEVWLGTLF 59

Query: 89  QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL------- 141
           Q+    E  +Q   V ++   P+ +       + LL+L   V  +  V  +CL       
Sbjct: 60  QNPQHGEPSLQRVPVAKMVCGPSGS------QLVLLKLERSVTLNQRVALICLPPEWYVV 113

Query: 142 ----------W-----DDSTAPLQLSAVE---------------------------GTSV 159
                     W       +   L ++ +                                
Sbjct: 114 PPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGA 173

Query: 160 CNGDSGGGMVFKIDSAWYLRGIVS 183
           C GD GG +     ++W L GI+ 
Sbjct: 174 CEGDYGGPLACFTHNSWVLEGIII 197

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
           +    V ++   P+ +       + LL+L   V  +  V  +CL      P       G 
Sbjct: 69  LQRVPVAKMVCGPSGS------QLVLLKLERSVTLNQRVALICL-----PPEWYVVPPGT 117

Query: 309 DGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
              + GWG  +       L +A++ ++S+Q+C   N +   +    E  C   
Sbjct: 118 KCEIAGWGETKGTGNDTVLNVALLNVISNQEC---NIKHRGRVRESE-MCTEG 166

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  124 bits (312), Expect = 8e-33
 Identities = 51/243 (20%), Positives = 83/243 (34%), Gaps = 67/243 (27%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V      G       GG+L+   +++TAAH +      +   + +L +
Sbjct: 93  GQKAKMGNFPWQVFT-NIHGR-----GGGALLGDRWILTAAHTL-YPKEHEAQSNASLDV 145

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPV 139
           +LG  +  +        N  ++RV ++P +    S N+ GDIALL+L + V     + P+
Sbjct: 146 FLGHTNVEELMKL---GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 202

Query: 140 CL-----------------W----DDSTAPLQLSAVE--GTSVCNGD-SGGGMVFKIDS- 174
           CL                 +    +     L+   +       C     G   +      
Sbjct: 203 CLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQN 262

Query: 175 ---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA--WYLRG 229
              A +                 D             C GDSGG    +  +   W   G
Sbjct: 263 MFCAGHPSLKQ------------DA------------CQGDSGGVFAVRDPNTDRWVATG 298

Query: 230 IVS 232
           IVS
Sbjct: 299 IVS 301

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)

Query: 254 VKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           ++RV ++P +    S N+ GDIALL+L + V     + P+CL D+ T         G  G
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFY-----DLGLMG 217

Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQC-LWSNPQFFSQFTSDETFCAGFRN 363
            V G+G    ++++ +L+   +P+ + Q C  W   +      S   FCAG  +
Sbjct: 218 YVSGFGV-MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 270

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  122 bits (308), Expect = 1e-32
 Identities = 51/245 (20%), Positives = 80/245 (32%), Gaps = 73/245 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  +  G  PW  A+Y          C GSLV   +V++AAHC +  P       D++ +
Sbjct: 39  GSSSLPGSHPWLAAIYIG-----DSFCAGSLVHTCWVVSAAHCFSHSP-----PRDSVSV 88

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN-YLGDIALLQLSSD----VDYSMYVR 137
            LG++  +        Q   +++   Y  ++  N    D+ L++L          S +V+
Sbjct: 89  VLGQHFFN--RTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQ 146

Query: 138 PVCL-----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFK 171
           P+CL                 W     + S     L            C+     G    
Sbjct: 147 PICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG--AD 204

Query: 172 IDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYL 227
           I      A Y                 D             C GDSGG +  + +   YL
Sbjct: 205 ISPNMLCAGYFDCKS------------DA------------CQGDSGGPLACEKNGVAYL 240

Query: 228 RGIVS 232
            GI+S
Sbjct: 241 YGIIS 245

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 14/124 (11%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSN-YLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAP 299
           T        +++   Y  ++  N    D+ L++L          S +V+P+CL       
Sbjct: 98  TTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICL-----PE 152

Query: 300 LQLSAVEGRDGTVIGWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETF 357
              +   G    + GWG+ + +    S  L+ A++P+V+  +C  S+P+ +    S    
Sbjct: 153 PGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC--SSPEVYGADISPNML 210

Query: 358 CAGF 361
           CAG+
Sbjct: 211 CAGY 214

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  120 bits (304), Expect = 2e-32
 Identities = 47/236 (19%), Positives = 77/236 (32%), Gaps = 72/236 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++      P+  ++     +N +++CGG LV+  +V++AAHC+      +      + +
Sbjct: 4   GREAEAHARPYMASVQ----LNGAHLCGGVLVAEQWVLSAAHCL------EDAADGKVQV 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG +       E   +   V R   +P         D+ LLQLS        VRP+   
Sbjct: 54  LLGAHSL--SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQ 111

Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
                                     P  L  V                           
Sbjct: 112 RVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA 171

Query: 156 ---GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
                  C GD+GG +V        L G+V+      G RVC  +    ++T VA+
Sbjct: 172 ESNRRDSCKGDAGGPLVCG----GVLEGVVTS-----GSRVCGNRKKPGIYTRVAS 218

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
              DV R   +P         D+ LLQLS        VRP+                   
Sbjct: 68  RLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDV--------AP 119

Query: 310 GT---VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
           GT   V GWG  +   R  + L+  ++P++    C  +         ++   CA 
Sbjct: 120 GTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATC--NRRTHHDGAITERLMCAE 172

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  120 bits (304), Expect = 2e-32
 Identities = 42/234 (17%), Positives = 74/234 (31%), Gaps = 68/234 (29%)

Query: 26  TARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG 85
             R    W V+L R       ++CGGSL+  ++V+TA  C          D      +LG
Sbjct: 6   PTRTNIGWMVSL-RYRN---KHICGGSLIKESWVLTARQCF------PSRDLKDYEAWLG 55

Query: 86  KYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL---- 141
            +  H   DE   Q   V ++   P  +      D+ L++L+       +V  + L    
Sbjct: 56  IHDVHGRGDEKCKQVLNVSQLVYGPEGS------DLVLMKLARPAVLDDFVSTIDLPNYG 109

Query: 142 -------------W-----DDSTAPLQLSAVE--GTSVCNGDSGGGMVFKIDS---AWYL 178
                        W      +    L+++ +   G   C+    G +    +S   A   
Sbjct: 110 STIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLN-ESEICAGAE 168

Query: 179 RGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           +                             C GD GG +V +      + G++ 
Sbjct: 169 KIGSG------------------------PCEGDYGGPLVCEQHKMRMVLGVIV 198

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 19/116 (16%)

Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
               +V ++   P  +      D+ L++L+       +V  + L          +  E  
Sbjct: 68  KQVLNVSQLVYGPEGS------DLVLMKLARPAVLDDFVSTIDL-----PNYGSTIPEKT 116

Query: 309 DGTVIGWGYDENDRVSEELKMAIMPIVSHQQC---LWSNPQFFSQFTSDETFCAGF 361
             +V GWGY         L++A + I+ +++C                 E  CAG 
Sbjct: 117 SCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGK----VTLNESE-ICAGA 167

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  124 bits (313), Expect = 2e-32
 Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 41/229 (17%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V +             G+L+  N+V+TAAH V    Y++  D+  L I
Sbjct: 165 GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAV----YEQKHDASALDI 214

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            +G   +              + V I+  +   + +  DIAL++L++ V  +  + P+CL
Sbjct: 215 RMGTLKRL----SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 270

Query: 142 WDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVV 201
                     +   GT      SG G+  +   A  L   V I +     + C   +   
Sbjct: 271 PRKEAESFMRTDDIGT-A----SGWGLTQRGFLARNLMY-VDIPIV--DHQKCTAAYEKP 322

Query: 202 FTDVANV----------------CNGDSGGGMVFKI--DSAWYLRGIVS 232
                +V                C GDSGG +VF       W++ GIVS
Sbjct: 323 PYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVS 371

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 92.1 bits (229), Expect = 6e-21
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 254 VKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCL-WDDSTAPLQLSAVEGRDGT 311
            + V I+  +   + +  DIAL++L++ V  +  + P+CL   ++ + ++        GT
Sbjct: 231 SEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMR----TDDIGT 286

Query: 312 VIGWGYDENDRVSEELKMAIMPIVSHQQC---LWSNPQFFSQFTSDETFCAGF 361
             GWG  +   ++  L    +PIV HQ+C       P      T++   CAG 
Sbjct: 287 ASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM-LCAGL 338

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  120 bits (304), Expect = 2e-32
 Identities = 44/239 (18%), Positives = 78/239 (32%), Gaps = 68/239 (28%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++ +    P+  ++         +VCGG L+   +V+TAAHC       +     +  +
Sbjct: 6   GKEVSPHSRPFMASIQ----YGGHHVCGGVLIDPQWVLTAAHC-----QYRFTKGQSPTV 56

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG +   +  +E   Q  ++K+   +    S     DI L++L +    + +V+ + + 
Sbjct: 57  VLGAHSLSK--NEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIR 114

Query: 142 ---------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
                          W     D       L  V        +CN  S       I     
Sbjct: 115 SKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMV 174

Query: 175 -AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            A   +G              D+            C GD+GG ++ K         IVS
Sbjct: 175 CAGDAKGQK------------DS------------CKGDAGGPLICK----GVFHAIVS 205

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 77.6 bits (192), Expect = 9e-17
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           +K+   +    S     DI L++L +    + +V+ + +   ++         G    V 
Sbjct: 75  IKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLR------SGTKCKVT 128

Query: 314 GWGYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
           GWG  + D  R S+ L+   + ++S + C   +      F + +  CAG 
Sbjct: 129 GWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGD 178

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  119 bits (302), Expect = 2e-32
 Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 42/220 (19%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G    +   P+  ALY +       +CGG L+   +V+TAAHC              L +
Sbjct: 4   GGPCDKTSHPYQAALYTSGH----LLCGGVLIHPLWVLTAAHCKKPN----------LQV 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           +LGK++      E   +   V R  I+P ++++++  DI LL+L+     S  ++P+ L 
Sbjct: 50  FLGKHNL--RQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLE 107

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
            D +A      +          G G     D    ++    I +       C+  +    
Sbjct: 108 RDCSANTTSCHI---------LGWGKTADGDFPDTIQC-AYIHLVSR--EECEHAYPGQI 155

Query: 203 TDV----------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           T             + C GDSGG +V       +LRG+VS
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLVCG----DHLRGLVS 191

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 80.3 bits (199), Expect = 7e-18
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
            V R  I+P ++++++  DI LL+L+     S  ++P+ L  D +A             +
Sbjct: 67  SVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAN-------TTSCHI 119

Query: 313 IGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
           +GWG   +    + ++ A + +VS ++C  + P       +    CAG 
Sbjct: 120 LGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQI----TQNMLCAGD 164

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  119 bits (302), Expect = 3e-32
 Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 69/234 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +   G +P+   L  T        CGGSL+   +++TAAHCV         D+ ++V+
Sbjct: 4   GYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH--------DAVSVVV 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           YLG   Q++     G      +R+  +  FN   YL D+AL+++   V+Y+  ++P+ L 
Sbjct: 56  YLGSAVQYE-----GEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLP 109

Query: 142 ------------------W---DDSTAPLQ---------------------------LSA 153
                             W   +  T  LQ                              
Sbjct: 110 SGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDT 169

Query: 154 VEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN 207
            +G S C GDSGG  V  +     L G+VS  V+  G   C++   V F+ V +
Sbjct: 170 SDGKSPCFGDSGGPFV--LSDKNLLIGVVSF-VSGAG---CESGKPVGFSRVTS 217

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 69.1 bits (170), Expect = 8e-14
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
            +R+  +  FN   YL D+AL+++   V+Y+  ++P+ L    +     +  E    TV 
Sbjct: 71  SERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRL---PSGEELNNKFENIWATVS 126

Query: 314 GWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
           GWG    D  +  L+     ++ + +C     ++      + T C  
Sbjct: 127 GWGQSNTD--TVILQYTYNLVIDNDRC---AQEYPPGIIVESTICGD 168

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  119 bits (301), Expect = 3e-32
 Identities = 41/227 (18%), Positives = 68/227 (29%), Gaps = 64/227 (28%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+K    Q+P+  ++ + +G    + CGG+L+   +V+TAA C       +  +     +
Sbjct: 4   GRKARPRQFPFLASI-QNQG---RHFCGGALIHARFVMTAASCF------QSQNPGVSTV 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG Y       E   +            ++    L D+ LLQL  + + +  V  + L 
Sbjct: 54  VLGAYDL--RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLP 111

Query: 142 --------------------WDDSTAPLQLSAVE---------------------GTSVC 160
                                           V                         +C
Sbjct: 112 LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLTRRGGIC 171

Query: 161 NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN 207
           NGD G  +V +        G+ S       L  C       FT VA 
Sbjct: 172 NGDGGTPLVCE----GLAHGVASF-----SLGPCGRG-PDFFTRVAL 208

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 72.2 bits (178), Expect = 7e-15
 Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 24/116 (20%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
             T          ++    L D+ LLQL  + + +  V  + L      PLQ + V    
Sbjct: 68  RQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPL------PLQNATV--EA 119

Query: 310 GT---VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
           GT   V GWG      R+S   +   + +    QC                 C G 
Sbjct: 120 GTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQC------------RPNNVCTGV 163

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  119 bits (301), Expect = 3e-32
 Identities = 51/240 (21%), Positives = 85/240 (35%), Gaps = 71/240 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +   G+WPW  +L      + S+ CG +L++  ++++AAHC T        +      
Sbjct: 4   GTEVEEGEWPWQASLQW----DGSHRCGATLINATWLVSAAHCFTTYK-----NPARWTA 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
             G   +           + ++R+ ++  +   ++  DI+L +LSS V Y+  V  VCL 
Sbjct: 55  SFGVTIK------PSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLP 108

Query: 142 ----------------W----DDSTAPLQLSAVE----GTSVCNG-DSGGGMVFKIDS-- 174
                           +    +D  +   L   +      + CN   +    +       
Sbjct: 109 DASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAIT--PRML 166

Query: 175 -AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMV-FKIDSAWYLRGIVS 232
            A  L G              D             C GDSGG +V       WYL GIVS
Sbjct: 167 CAGSLEGKT------------DA------------CQGDSGGPLVSSDARDIWYLAGIVS 202

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           ++R+ ++  +   ++  DI+L +LSS V Y+  V  VCL D S          G    V 
Sbjct: 69  LRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEF-----QPGDVMFVT 123

Query: 314 GWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
           G+G    +      L+ A + ++    C  + PQ ++   +    CAG 
Sbjct: 124 GFGALKNDGYSQNHLRQAQVTLIDATTC--NEPQAYNDAITPRMLCAGS 170

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  119 bits (301), Expect = 3e-32
 Identities = 49/233 (21%), Positives = 74/233 (31%), Gaps = 72/233 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+  +    PW  AL           C G LV   +V++AAHC            ++  I
Sbjct: 4   GEDCSPHSQPWQAALVMENE----LFCSGVLVHPQWVLSAAHCF----------QNSYTI 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG  H  +   E G Q  +      +P +N      D+ L++L   V  S  +R + + 
Sbjct: 50  GLGL-HSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIA 108

Query: 142 --------------W---DDSTAPLQLSAVE----------------------------- 155
                         W    +   P  L  V                              
Sbjct: 109 SQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQD 168

Query: 156 GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
               CNGDSGG ++       YL+G+VS      G   C       V+T++  
Sbjct: 169 QKDSCNGDSGGPLICN----GYLQGLVSF-----GKAPCGQVGVPGVYTNLCK 212

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
              +      +P +N      D+ L++L   V  S  +R + +              G  
Sbjct: 65  QMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTA-------GNS 117

Query: 310 GTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             V GWG   N R+   L+   + +VS + C   +  +   +     FCAG 
Sbjct: 118 CLVSGWGLLANGRMPTVLQCVNVSVVSEEVC---SKLYDPLYHPS-MFCAGG 165

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  119 bits (301), Expect = 3e-32
 Identities = 47/234 (20%), Positives = 72/234 (30%), Gaps = 72/234 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G        PW  AL           CG  LV   +++TAAHC                +
Sbjct: 4   GSDCDMHTQPWQAALLLRPN---QLYCGAVLVHPQWLLTAAHCR----------KKVFRV 50

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG Y       E G Q  Q  +   +P ++   +  D+ L++L+  +  +  VRP+ + 
Sbjct: 51  RLGHYSLSP-VYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS 109

Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
                         W          P  L  +                            
Sbjct: 110 SHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDK 169

Query: 156 -GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
            G   C GDSGG +V        L+G+VS      G   C   +   V+T++  
Sbjct: 170 AGRDSCQGDSGGPVVCN----GSLQGLVSW-----GDYPCARPNRPGVYTNLCK 214

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 72.2 bits (178), Expect = 7e-15
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 13/111 (11%)

Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
             +   +P ++   +  D+ L++L+  +  +  VRP+ +     +        G    V 
Sbjct: 70  GVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSA-------GTKCLVS 122

Query: 314 GWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
           GWG          + L+   + ++S ++C      +  Q      FCAG +
Sbjct: 123 GWGTTKSPQVHFPKVLQCLNISVLSQKRC---EDAYPRQIDDT-MFCAGDK 169

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  119 bits (300), Expect = 4e-32
 Identities = 50/227 (22%), Positives = 84/227 (37%), Gaps = 61/227 (26%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+  +L +  G   S+ CGG+L+  ++V+TAAHC+      + +    + +
Sbjct: 4   GHEAQPHSRPYMASL-QMRGNPGSHFCGGTLIHPSFVLTAAHCL------RDIPQRLVNV 56

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG ++    + E   Q+  V +V     +++ N L DI L+QLSS  + S  V  V L 
Sbjct: 57  VLGAHNV--RTQEPTQQHFSVAQV-FLNNYDAENKLNDILLIQLSSPANLSASVATVQLP 113

Query: 142 --------------------WDDSTAPLQLSAVE--------------------GTSVCN 161
                                        L  +                        +C 
Sbjct: 114 QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICF 173

Query: 162 GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
           GDSGG ++        ++GI S       +  C T+ +   FT VA 
Sbjct: 174 GDSGGPLICD----GIIQGIDSF-----VIWGCATRLFPDFFTRVAL 211

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
            V +V     +++ N L DI L+QLSS  + S  V  V L      P Q   V    GT 
Sbjct: 74  SVAQV-FLNNYDAENKLNDILLIQLSSPANLSASVATVQL------PQQDQPV--PHGTQ 124

Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQ 338
              +GWG    +D  ++ L+   + +V+  
Sbjct: 125 CLAMGWGRVGAHDPPAQVLQELNVTVVTFF 154

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  119 bits (300), Expect = 5e-32
 Identities = 50/209 (23%), Positives = 76/209 (36%), Gaps = 69/209 (33%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P  V+L         + CGGSLV+ N+V++AAHC   +          + +
Sbjct: 4   GYECKAYSQPHQVSLNSG-----YHFCGGSLVNENWVVSAAHCYKSR----------VEV 48

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG+++      EG  Q     RV  +P ++S N   DI L++LS     + YV+PV L 
Sbjct: 49  RLGEHNI--KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106

Query: 142 --------------W----DDSTAPLQLSAVE---------------------------- 155
                         W      +    +L  +                             
Sbjct: 107 TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLE 166

Query: 156 -GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
            G   C GDSGG +V        L+G+VS
Sbjct: 167 GGKDSCQGDSGGPVVCN----GELQGVVS 191

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 77.5 bits (192), Expect = 8e-17
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
             F    RV  +P ++S N   DI L++LS     + YV+PV L              G 
Sbjct: 62  EQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPA-------GT 114

Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             TV GWG    +   S +L+   +PI+S+  C  S P      T+   FCAG+
Sbjct: 115 MCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYP---GMITNA-MFCAGY 164

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  124 bits (313), Expect = 7e-32
 Identities = 50/246 (20%), Positives = 85/246 (34%), Gaps = 53/246 (21%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
              + + + PWHV +           C G+L+S  +V+TAAHC          D     +
Sbjct: 227 ANASDQERTPWHVTIKP----KSQETCRGALISDQWVLTAAHCFRDGN-----DHSLWRV 277

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYS 133
            +G             +   +++  I P F+            Y  DIALL+L+  V  S
Sbjct: 278 NVGDPKSQ------WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMS 331

Query: 134 MYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR----GIVSITVARD 189
            + RP+CL     A L L   +G++    D    ++ K     +        ++I +   
Sbjct: 332 THARPICLPCTMEANLALRRPQGSTC--RDHENELLNKQSVPAHFVALNGSKLNINLKMG 389

Query: 190 GLR-VCDTKHYVVFTDVANV----------------------CNGDSGGGMVFKIDSAWY 226
                C        T   N+                      C G+SGG +  +    ++
Sbjct: 390 VEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFF 449

Query: 227 LRGIVS 232
             G+VS
Sbjct: 450 QVGLVS 455

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 69.6 bits (170), Expect = 3e-13
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 26/136 (19%)

Query: 254 VKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
           +++  I P F+            Y  DIALL+L+  V  S + RP+CL     A L L  
Sbjct: 292 IEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRR 351

Query: 305 VEGRDGTVIGWGYDENDRVSE--------ELKMAIMPIVSHQQC--LWSNPQFFSQFTSD 354
            +G               V          +L + +   V    C  + S  +      +D
Sbjct: 352 PQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTD 411

Query: 355 ET-------FCAGFRN 363
                     C+G + 
Sbjct: 412 VREVVTDQFLCSGTQE 427

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  118 bits (298), Expect = 8e-32
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 64/227 (28%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++     WP+ V+L     +   + CG +L++ N+V++AAHCV        V+   + +
Sbjct: 4   GRRARPHAWPFMVSLQ----LRGGHFCGATLIAPNFVMSAAHCV------ANVNVRAVRV 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG ++      E   Q   V+R+     ++  N L DI +LQL+     +  V+   L 
Sbjct: 54  VLGAHNL--SRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLP 110

Query: 142 --------------------WDDSTAPLQLSAVE--------------------GTSVCN 161
                                 +      L  +                        VC 
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCF 170

Query: 162 GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
           GDSG  +V        + GI S          C +  Y   F  VA 
Sbjct: 171 GDSGSPLVCN----GLIHGIASF-----VRGGCASGLYPDAFAPVAQ 208

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 63.3 bits (155), Expect = 7e-12
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 22/111 (19%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE-GRDGT 311
            V+R+     ++  N L DI +LQL+     +  V+   L      P Q   +  G    
Sbjct: 71  AVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQL------PAQGRRLGNGVQCL 123

Query: 312 VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            +GWG    N  ++  L+   + +V+   C                 C   
Sbjct: 124 AMGWGLLGRNRGIASVLQELNVTVVT-SLC------------RRSNVCTLV 161

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  122 bits (308), Expect = 8e-32
 Identities = 53/243 (21%), Positives = 85/243 (34%), Gaps = 67/243 (27%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V      G       GG+L+   +++TAAH +  K   +   + +L +
Sbjct: 161 GQKAKMGNFPWQVFT-NIHGR-----GGGALLGDRWILTAAHTLYPKE-HEAQSNASLDV 213

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPV 139
           +LG  +  +        N  ++RV ++P +    S N+ GDIALL+L + V     + P+
Sbjct: 214 FLGHTNVEELMKL---GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPI 270

Query: 140 CL-----------------W----DDSTAPLQLSAVE--GTSVCNGDSGGGMVFKIDS-- 174
           CL                 +    +     L+   +       C     G     + S  
Sbjct: 271 CLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQN 330

Query: 175 ---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSA--WYLRG 229
              A +                 D             C GDSGG    +  +   W   G
Sbjct: 331 MFCAGHPSLKQ------------DA------------CQGDSGGVFAVRDPNTDRWVATG 366

Query: 230 IVS 232
           IVS
Sbjct: 367 IVS 369

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)

Query: 254 VKRVHIYPTFN---SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDG 310
           ++RV ++P +    S N+ GDIALL+L + V     + P+CL D+ T         G  G
Sbjct: 231 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFY-----DLGLMG 285

Query: 311 TVIGWGYDENDRVSEELKMAIMPIVSHQQC-LWSNPQFFSQFTSDETFCAGFRN 363
            V G+G    ++++ +L+   +P+ + Q C  W   +      S   FCAG  +
Sbjct: 286 YVSGFGV-MEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 338

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  118 bits (299), Expect = 9e-32
 Identities = 46/214 (21%), Positives = 74/214 (34%), Gaps = 61/214 (28%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+      W W V+L   +     + CGGSL++ ++V+TA HC++         S T  +
Sbjct: 2   GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--------TSRTYQV 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVC 140
            LG+Y +        V       + ++P +NS+      DIAL++LS        V+   
Sbjct: 54  VLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLAN 113

Query: 141 L---------------------WDDSTAPLQLSAVE------------------------ 155
           L                     +     P +L                            
Sbjct: 114 LPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMV 173

Query: 156 -----GTSVCNGDSGGGMV-FKIDSAWYLRGIVS 183
                  S CNGDSGG +     D +W + G+ S
Sbjct: 174 CAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTS 207

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 73.0 bits (180), Expect = 4e-15
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 249 VVFTDVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE 306
           V+  +   + ++P +NS+      DIAL++LS        V+   L              
Sbjct: 69  VIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDIL-----PN 123

Query: 307 GRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
                + GWG       + ++L+ A++P V ++ C  S   ++         CAG 
Sbjct: 124 EAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHC--SQWDWWGITVKKTMVCAGG 177

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  120 bits (303), Expect = 1e-31
 Identities = 38/249 (15%), Positives = 68/249 (27%), Gaps = 70/249 (28%)

Query: 7   SCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
            C          L +  +       PW V L  +EG      CGG ++  N+V+T A C 
Sbjct: 81  QCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEG---KDFCGGVIIRENFVLTTAKCS 137

Query: 67  TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQL 126
                        + +                   ++  VH++  +++     D++LL+L
Sbjct: 138 LL--------HRNITVKTYFNRT-----SQDPLMIKITHVHVHMRYDADAGENDLSLLEL 184

Query: 127 SSDVDYSMYVRPVCL--------------------W----DDSTAPLQLSAVE------- 155
              +       PVC                     W     D    L    V        
Sbjct: 185 EWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTLVEGEEC 244

Query: 156 -----------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
                              +  +   G  +  +   +W+L G++          V    H
Sbjct: 245 GQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREHRGSWFLTGVLG------SQPVGGQAH 298

Query: 199 YVVFTDVAN 207
            V+ T V+ 
Sbjct: 299 MVLVTKVSR 307

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 87.8 bits (218), Expect = 9e-20
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 244 DTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
            T    +   +  VH++  +++     D++LL+L   +       PVC  +   A   L 
Sbjct: 151 RTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLI 210

Query: 304 AVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
                 G + GW       +   L    + +V  ++C     Q  +   +  T+C  
Sbjct: 211 P--RTRGLLSGWAR-NGTDLGNSLTTRPVTLVEGEECG----QVLNVTVTTRTYCER 260

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  118 bits (297), Expect = 1e-31
 Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 71/210 (33%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   ARG  PW VAL           CGG LV+  +V+TAAHC   +            +
Sbjct: 4   GAPCARGSHPWQVALLSGNQ----LHCGGVLVNERWVLTAAHCKMNE----------YTV 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           +LG         +   Q  +  +   +P +++  ++ D+ L++L+S    S  V+ V L 
Sbjct: 50  HLGSDTL----GDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLP 105

Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
                         W      D T P  L  V+                           
Sbjct: 106 SRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIP 165

Query: 156 --GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
               + CNGDSGG +V +      L+G+VS
Sbjct: 166 DSKKNACNGDSGGPLVCR----GTLQGLVS 191

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 72.6 bits (179), Expect = 5e-15
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
             +   +P +++  ++ D+ L++L+S    S  V+ V L      P       G   TV 
Sbjct: 66  ASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPP-------GTTCTVS 118

Query: 314 GWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
           GWG     +     +L    + ++S Q C     + +     +   CAG 
Sbjct: 119 GWGTTTSPDVTFPSDLMCVDVKLISPQDCT----KVYKDLLENSMLCAGI 164

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  117 bits (296), Expect = 2e-31
 Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 42/223 (18%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G ++     P+   L       L  +CGG L+S  +V+TAAHC              + +
Sbjct: 4   GVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCK----------GREITV 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG +       E   Q  +V++  I+ ++NS   L DI LL+L   V+ +  V  V L 
Sbjct: 54  ILGAHDV--RKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPL- 110

Query: 143 DDSTAPLQLSAVEGTSVCN----GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH 198
                P     +   ++C     G +G         ++ LR  V + +  +  + C    
Sbjct: 111 -----PSPSDFIHPGAMCWAAGWGKTGVRDPT----SYTLRE-VELRIMDE--KACVDYR 158

Query: 199 YVVFTD---------VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           Y  +           +     GDSGG ++          GIVS
Sbjct: 159 YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVS 197

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 75.6 bits (187), Expect = 3e-16
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 17/115 (14%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
            V++  I+ ++NS   L DI LL+L   V+ +  V  V L      P     +    G  
Sbjct: 71  KVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPL------PSPSDFI--HPGAM 122

Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
               GWG     D  S  L+   + I+  + C       +  +      C G   
Sbjct: 123 CWAAGWGKTGVRDPTSYTLREVELRIMDEKAC-----VDYRYYEYKFQVCVGSPT 172

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  118 bits (297), Expect = 2e-31
 Identities = 51/215 (23%), Positives = 83/215 (38%), Gaps = 64/215 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+      WPW V+L         + CGG+LV  ++V+TAAHC+          S T  +
Sbjct: 4   GEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCI--------SSSRTYRV 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVC 140
            LG++     ++E G    +V ++ ++  +NS+  +   DIALL+L+S V  +  ++  C
Sbjct: 56  VLGRHSLS--TNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGC 113

Query: 141 ---------------------LWDDSTAPLQLSAVE------------------------ 155
                                L  +  +P  L   +                        
Sbjct: 114 LPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMI 173

Query: 156 ------GTSVCNGDSGGGMV-FKIDSAWYLRGIVS 183
                   S CNGDSGG +     +  W + GIVS
Sbjct: 174 CAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVS 208

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
            +   +   V ++ ++  +NS+  +   DIALL+L+S V  +  ++  CL          
Sbjct: 65  NEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL-----PAAGT 119

Query: 303 SAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
                    V GWG    N    + L+   + +V +  C  S P ++         CAG 
Sbjct: 120 ILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATC--SKPGWWGSTVKTNMICAGG 177

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  117 bits (296), Expect = 3e-31
 Identities = 52/238 (21%), Positives = 77/238 (32%), Gaps = 70/238 (29%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +    +  + VALY +    L   CGG+L++  +V+TAAHC  K             I
Sbjct: 4   GDECNINEHRFLVALYTSRSRTL--FCGGTLINQEWVLTAAHCDRKN----------FRI 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG  H  +  +E        ++     + N + +  DI L++L S V  S ++ P  L 
Sbjct: 52  KLGM-HSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLP 110

Query: 142 --------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS---- 174
                         W      + T P     V        +C             S    
Sbjct: 111 SSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCR-APYPEFELPATSRTLC 169

Query: 175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
           A  L G              DT            C GDSGG ++         +GI S
Sbjct: 170 AGILEGGK------------DT------------CKGDSGGPLICN----GQFQGIAS 199

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 79.9 bits (198), Expect = 1e-17
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 10/115 (8%)

Query: 249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
                 ++     + N + +  DI L++L S V  S ++ P  L     +        G 
Sbjct: 66  QTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSV-------GS 118

Query: 309 DGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
              ++GWG          +      + ++ ++ C    P+F    TS  T CAG 
Sbjct: 119 VCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSR-TLCAGI 172

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score =  113 bits (286), Expect = 4e-31
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 14/119 (11%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++   G WPW V+L    G    + CGGSL++ N+V+TAAHC               V+
Sbjct: 4   GEEAVPGSWPWQVSLQDKTG---FHFCGGSLINENWVVTAAHCGVTTSD---------VV 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
             G++ Q   S    +Q  ++ +V     +NS     DI LL+LS+   +S  V  VCL
Sbjct: 52  VAGEFDQG--SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCL 108

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
            +    + +V     +NS     DI LL+LS+   +S  V  VCL              G
Sbjct: 64  KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCL-----PSASDDFAAG 118

Query: 308 RDGTVIGWGY 317
                 GWG 
Sbjct: 119 TTCVTTGWGL 128

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  116 bits (293), Expect = 5e-31
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 74/234 (31%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +    +  +   +Y         +CGG+L++  +V+TA HC              + I
Sbjct: 4   GDECNINEHRFLALVYAN-----GSLCGGTLINQEWVLTARHCDRGN----------MRI 48

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
           YLG  H  +  ++  ++    ++     T N + +  DI L++L+  V  S ++ P+ L 
Sbjct: 49  YLGM-HNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP 107

Query: 142 --------------W-----DDSTAPLQLSAVE--------------------------- 155
                         W      ++T P                                  
Sbjct: 108 SNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATTLCAGILE 167

Query: 156 -GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
            G   C GDSGG ++         +GI+S+     G   C       ++T V +
Sbjct: 168 GGKDTCKGDSGGPLICN----GQFQGILSV-----GGNPCAQPRKPGIYTKVFD 212

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 74.9 bits (185), Expect = 7e-16
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
            K  +     ++     T N + +  DI L++L+  V  S ++ P+ L  +  +      
Sbjct: 59  NKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSV----- 113

Query: 305 VEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             G    ++GWG     N  + +    A + I+ +  C  +         +  T CAG 
Sbjct: 114 --GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGL-----AATTLCAGI 165

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  118 bits (298), Expect = 8e-31
 Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 46/235 (19%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G       +PW V              GG+L++  +V+TAAH V          +    +
Sbjct: 86  GSDADIKNFPWQVFFDN-------PWAGGALINEYWVLTAAHVV--------EGNREPTM 130

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFN-------SSNYLGDIALLQLSSDVDYSMY 135
           Y+G       S     +    + V I+P +         +N+  DIAL++L   V     
Sbjct: 131 YVGSTSVQT-SRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPT 189

Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRG----IVSITVARDGL 191
           V P+CL   S+    +    G  +    SG G   K D A  L+     +  +   ++  
Sbjct: 190 VSPICLPGTSSDYNLMDGDLGL-I----SGWGRTEKRDRAVRLKAARLPVAPLRKCKEVK 244

Query: 192 RVCDTKHYVVFTDVANV-----------CNGDSGGGMVFKIDSA---WYLRGIVS 232
               T     +    N+           C GDSGG    +  +    +Y  G+VS
Sbjct: 245 VEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVS 299

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 87.9 bits (218), Expect = 9e-20
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 254 VKRVHIYPTFN-------SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE 306
            + V I+P +         +N+  DIAL++L   V     V P+CL   S+     + ++
Sbjct: 150 PEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSS---DYNLMD 206

Query: 307 GRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQC-----LWSNPQFFSQFTSDETFCAGF 361
           G  G + GWG  E    +  LK A +P+   ++C             +   +    CAG 
Sbjct: 207 GDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGG 266

Query: 362 R 362
            
Sbjct: 267 E 267

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  122 bits (308), Expect = 8e-31
 Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 58/252 (23%)

Query: 22  YGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV 81
           + + T   + PW   +           C G++VS  +V+TAAHC T           ++ 
Sbjct: 459 HRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD-----KEHSIK 513

Query: 82  IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDY 132
           + +G             ++ +++ V  +P +N +          Y  D+AL++L + + Y
Sbjct: 514 VSVGGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKY 563

Query: 133 SMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS--------- 183
              +RP+CL         L     T+         ++   D                   
Sbjct: 564 GQTIRPICLPCTEGTTRALRLPPTTTC--QQQKEELLPAQDIKALFVSEEEKKLTRKEVY 621

Query: 184 -ITVARDGLRVCDTKHYVVFTDVANV----------------------CNGDSGGGMVFK 220
                + G    D ++   +  V ++                      C GDSGG ++  
Sbjct: 622 IKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH 681

Query: 221 IDSAWYLRGIVS 232
             S +   G++S
Sbjct: 682 KRSRFIQVGVIS 693

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 65.5 bits (159), Expect = 9e-12
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 28/137 (20%)

Query: 253 DVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS 303
           +++ V  +P +N +          Y  D+AL++L + + Y   +RP+CL         L 
Sbjct: 524 EIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR 583

Query: 304 AVEGRDGTVIGWGYDEND--------RVSEELKMAIMPIVSHQQC-----------LWSN 344
                                        ++L    + I +  +             +  
Sbjct: 584 LPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDK 643

Query: 345 PQFFSQFTSDETFCAGF 361
            +  S+  +    C G 
Sbjct: 644 VKDISEVVTPRFLCTGG 660

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  115 bits (290), Expect = 1e-30
 Identities = 54/239 (22%), Positives = 85/239 (35%), Gaps = 75/239 (31%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   + G +P+ V++ R    N    CGGSL++ N V+TAAHCV+              I
Sbjct: 4   GTSASAGDFPFIVSISR----NGGPWCGGSLLNANTVLTAAHCVSG------YAQSGFQI 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
             G   +       G     +  V ++P+++ +N   D+A+L+LS+ +     +    L 
Sbjct: 54  RAGSLSR-----TSGGITSSLSSVRVHPSYSGNNN--DLAILKLSTSIPSGGNIGYARLA 106

Query: 142 ----------------W-----DDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS-- 174
                           W       S+ P+ L  V       + C    G   +   +   
Sbjct: 107 ASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAIT--NQMF 164

Query: 175 -AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            A    G              D+            C GDSGG +V   DS+  L G VS
Sbjct: 165 CAGVSSGGK------------DS------------CQGDSGGPIV---DSSNTLIGAVS 196

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score = 76.0 bits (188), Expect = 3e-16
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
           + + +  V ++P+++ +N   D+A+L+LS+ +     +    L    + P     V G  
Sbjct: 65  ITSSLSSVRVHPSYSGNNN--DLAILKLSTSIPSGGNIGYARLAASGSDP-----VAGSS 117

Query: 310 GTVIGWGY-DENDRVSEE-LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
            TV GWG   E    +   L    +PIVS   C     Q+ +   +++ FCAG  +
Sbjct: 118 ATVAGWGATSEGGSSTPVNLLKVTVPIVSRATC---RAQYGTSAITNQMFCAGVSS 170

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  115 bits (290), Expect = 1e-30
 Identities = 41/210 (19%), Positives = 65/210 (30%), Gaps = 65/210 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+   L        S  CGG L+  N+V+TAAHC             ++ +
Sbjct: 4   GTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA----------GRSITV 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG ++     +E   Q  +V +   +P +N+S    DI LL+L      ++ V  +   
Sbjct: 54  TLGAHNI--TEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFP 111

Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
                                        L  V+                          
Sbjct: 112 SQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNP 171

Query: 156 --GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
               S   GDSGG ++         +GIVS
Sbjct: 172 RKTKSAFKGDSGGPLLCA----GVAQGIVS 197

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 74.9 bits (185), Expect = 7e-16
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
           +V +   +P +N+S    DI LL+L      ++ V  +        P Q + V    G  
Sbjct: 71  EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF------PSQFNFV--PPGRM 122

Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
             V GWG        S+ L+   + ++  Q C       F  F  +   C G   
Sbjct: 123 CRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC-----SHFRDFDHNLQLCVGNPR 172

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  115 bits (290), Expect = 1e-30
 Identities = 55/237 (23%), Positives = 80/237 (33%), Gaps = 77/237 (32%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++      PW  AL++ E      +CGG LV   +V+TAAHC  +K            +
Sbjct: 4   GRECIPHSQPWQAALFQGER----LICGGVLVGDRWVLTAAHCKKQK----------YSV 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG---DIALLQLSSDVDYSMYVRPV 139
            LG +       +   Q  QV +   +P +N+SN      DI L++L +  +    V+PV
Sbjct: 50  RLGDHSLQS--RDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPV 107

Query: 140 CL---------------W-----DDSTAPLQLSAVE------------------------ 155
            L               W          P  L+  E                        
Sbjct: 108 QLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCA 167

Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
               G   C GDSGG +V        L+GI S      G   C       V+T +  
Sbjct: 168 GSSNGADTCQGDSGGPLVCD----GMLQGITSW-----GSDPCGKPEKPGVYTKICR 215

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 253 DVKRVHIYPTFNSSNYLG---DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
            V +   +P +N+SN      DI L++L +  +    V+PV L +            G+ 
Sbjct: 67  QVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKV-------GQK 119

Query: 310 GTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
             + GWG      +     L  A + I S  +C  + P    + T     CAG  
Sbjct: 120 CIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYP---GKITEG-MVCAGSS 170

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  114 bits (288), Expect = 2e-30
 Identities = 43/212 (20%), Positives = 66/212 (31%), Gaps = 67/212 (31%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G + +    P+       +       CGG LV   +V+TAAHC             ++ +
Sbjct: 4   GNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK----------GRSMTV 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG ++    + E   Q   V +   +P +N  +   DI LL+L  +   +  VRP+ L 
Sbjct: 54  TLGAHNI--KAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLP 111

Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
                                 D   P  L  V+                          
Sbjct: 112 RRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVG 171

Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
                 +    DSGG +V K        GIVS
Sbjct: 172 DSKIKGASFEEDSGGPLVCK----RAAAGIVS 199

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 79.5 bits (197), Expect = 1e-17
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
            V +   +P +N  +   DI LL+L  +   +  VRP+ L      P + + V  + G  
Sbjct: 71  PVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNL------PRRNAHV--KPGDE 122

Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
             V GWG    +    + L    + +   Q C     QF S +      C G   
Sbjct: 123 CYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVC---ESQFQSSYNRANEICVGDSK 174

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  114 bits (288), Expect = 3e-30
 Identities = 52/239 (21%), Positives = 84/239 (35%), Gaps = 72/239 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+ V L     ++   +C G+L++ ++V+TAAHC   K            +
Sbjct: 4   GNEVTPHSRPYMVLLS----LDRKTICAGALIAKDWVLTAAHCNLNKRS---------QV 50

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG +   +  +E   Q   VK+   YP ++ +   GD+ LLQL+     + YV  + L 
Sbjct: 51  ILGAHSITR--EEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLP 108

Query: 142 --------------------WDDSTAPLQLSAVE----GTSVCNGDSGGGMVFKIDS--- 174
                                + ++    L  VE       VCN  +       I     
Sbjct: 109 KKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMV 168

Query: 175 -AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            A  LRG              D+            CNGDSG  ++ +       RG+ S
Sbjct: 169 CAGSLRGGR------------DS------------CNGDSGSPLLCE----GVFRGVTS 199

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
            VK+   YP ++ +   GD+ LLQL+     + YV  + L      P +   V  + GT 
Sbjct: 68  LVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHL------PKKGDDV--KPGTM 119

Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
             V GWG    +   S+ L+   + I+  + C   N   F+        CAG   
Sbjct: 120 CQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLR 174

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  114 bits (287), Expect = 4e-30
 Identities = 55/220 (25%), Positives = 78/220 (35%), Gaps = 37/220 (16%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+++     P+   L           CGG LV  ++V+TAAHC              + +
Sbjct: 4   GRESRPHSRPYMAYLQIQSPAG-QSRCGGFLVREDFVLTAAHCW----------GSNINV 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG ++      E   Q+   +R   +P +N      DI LLQLS  V  +  V PV L 
Sbjct: 53  TLGAHNI--QRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVAL- 109

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                P     +   ++C   +G G V        LR  V + V RD  R C        
Sbjct: 110 -----PRAQEGLRPGTLCTV-AGWGRVSMRRGTDTLRE-VQLRVQRD--RQCLRIFGSYD 160

Query: 203 TD----------VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                             GDSGG ++          GIVS
Sbjct: 161 PRRQICVGDRRERKAAFKGDSGGPLLCN----NVAHGIVS 196

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 78.3 bits (194), Expect = 5e-17
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
             +R   +P +N      DI LLQLS  V  +  V PV L               R GT 
Sbjct: 70  TARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGL--------RPGTL 121

Query: 312 --VIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
             V GWG     R ++ L+   + +   +QC     + F  +      C G R 
Sbjct: 122 CTVAGWGRVSMRRGTDTLREVQLRVQRDRQC----LRIFGSYDPRRQICVGDRR 171

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  113 bits (286), Expect = 6e-30
 Identities = 48/237 (20%), Positives = 72/237 (30%), Gaps = 77/237 (32%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +    +    VA + + G    + C G+L++  +V+TAAHC                +
Sbjct: 4   GDECNINEHRSLVAFFNSTG----FFCSGTLINEEWVLTAAHCDNTN----------FQM 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPT-FNSSNYLGDIALLQLSSDVDYSMYVRPVCL 141
            LG + +         Q +  K   I P   N      DI L++L S V  S ++ P+ L
Sbjct: 50  KLGVHSK--KVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSL 107

Query: 142 ---------------W-----DDSTAPLQLSAVE-------------------------- 155
                          W        T P                                 
Sbjct: 108 PSSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAG 167

Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
               G   C GDSGG ++         +GIVS      G   C       V+T V +
Sbjct: 168 ILEGGKDTCGGDSGGPLICN----GQFQGIVSF-----GAHPCGQGLKPGVYTKVFD 215

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 72.2 bits (178), Expect = 8e-15
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 13/115 (11%)

Query: 250 VFTDVKRVHIYPT-FNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGR 308
              + K   I P   N      DI L++L S V  S ++ P+ L     +        G 
Sbjct: 64  QTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSV-------GS 116

Query: 309 DGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
              ++GWG          +    A + ++    C      +    T   T CAG 
Sbjct: 117 VCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVC---QAGYPELLTEYRTLCAGI 168

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  113 bits (284), Expect = 8e-30
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 48/224 (21%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+    G++P+ V+L R  G   S+ CG S++  N V+TAAHCV     D   + + L +
Sbjct: 4   GKDAPVGKYPYQVSL-RLSG---SHRCGASILDNNNVLTAAHCV-----DGLSNLNRLKV 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           ++G  +              V+   +   ++      D+AL+ L++ + ++  V+P+ L 
Sbjct: 55  HVGTNYL-----SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKL- 108

Query: 143 DDSTAPLQLSAVEGTSVC-----NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK 197
                      +E          +   GG      ++   L+ I  I   +     C+  
Sbjct: 109 -----STNDEDLESNPCTLTGWGSTRLGG------NTPNALQEIELIVHPQK---QCERD 154

Query: 198 HYVVFTD---------VANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            + V  D             C+GDSGG +V          GIVS
Sbjct: 155 QWRV-IDSHICTLTKRGEGACHGDSGGPLVAN----GAQIGIVS 193

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score = 77.2 bits (191), Expect = 9e-17
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVI 313
           V+   +   ++      D+AL+ L++ + ++  V+P+ L            +E    T+ 
Sbjct: 70  VEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKL------STNDEDLESNPCTLT 123

Query: 314 GWGY-DENDRVSEELKMAIMPIVSHQQC 340
           GWG           L+   + +   +QC
Sbjct: 124 GWGSTRLGGNTPNALQEIELIVHPQKQC 151

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  119 bits (299), Expect = 8e-30
 Identities = 52/263 (19%), Positives = 88/263 (33%), Gaps = 70/263 (26%)

Query: 2   CYRDVSCGT-VVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVI 60
               +SCG     +  +  +  G++   G  PW VA+    G      CGG  +   +++
Sbjct: 303 LLPKLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASG----ITCGGIYIGGCWIL 358

Query: 61  TAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGD 120
           TAAHC+      +        I+          D   +  + V R+  +  +N+  Y  D
Sbjct: 359 TAAHCLRASKTHR------YQIWTTVVDWIH-PDLKRIVIEYVDRIIFHENYNAGTYQND 411

Query: 121 IALLQLSSDVDYSM----YVRPVCL-----------------W-----DDSTAPLQLSAV 154
           IAL+++  D +          P C+                 W     ++    LQ   V
Sbjct: 412 IALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEV 471

Query: 155 EGTSVCNGDSGGGMVFKIDS----AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCN 210
           +  S C+   G       +     A    G +            D             C 
Sbjct: 472 KLISNCSKFYGNRF---YEKEMECAGTYDGSI------------DA------------CK 504

Query: 211 GDSGGGMV-FKIDSAWYLRGIVS 232
           GDSGG +V    ++  Y+ G+VS
Sbjct: 505 GDSGGPLVCMDANNVTYVWGVVS 527

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 78.4 bits (193), Expect = 5e-16
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 17/136 (12%)

Query: 232 SITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM----YV 287
            I          D K  V+   V R+  +  +N+  Y  DIAL+++  D +         
Sbjct: 373 QIWTTVVDWIHPDLKRIVIEY-VDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRS 431

Query: 288 RPVCL-WDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQ 346
            P C+ W                  V GWG ++++     L+   + ++S+    + N  
Sbjct: 432 IPACVPWSPYLFQ------PNDTCIVSGWGREKDNERVFSLQWGEVKLISNCSKFYGN-- 483

Query: 347 FFSQFTSDETFCAGFR 362
              +F   E  CAG  
Sbjct: 484 ---RFYEKEMECAGTY 496

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  113 bits (285), Expect = 9e-30
 Identities = 60/246 (24%), Positives = 83/246 (33%), Gaps = 86/246 (34%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
            Q       PWHVA+YR       Y CGG L+  N+V+TAAHC   K            +
Sbjct: 7   SQVDCENSQPWHVAVYRFNK----YQCGGVLLDRNWVLTAAHCYNDK----------YQV 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
           +LGK   +   DE   Q++ V +   +P FN S           +Y  D+ LL+LS   D
Sbjct: 53  WLGKN--NFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPAD 110

Query: 132 YSMYVRPVCL---------------W-----DDSTAPLQLSAVE---------------- 155
            +  V+P+ L               W          P  L  V                 
Sbjct: 111 ITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMK 170

Query: 156 -------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VV 201
                        G+  C  DSGG ++        L+GI S      G   C       V
Sbjct: 171 VTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSW-----GPEPCGEPTEPSV 221

Query: 202 FTDVAN 207
           +T +  
Sbjct: 222 YTKLIK 227

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 24/122 (19%)

Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
            V +   +P FN S           +Y  D+ LL+LS   D +  V+P+ L  +      
Sbjct: 70  LVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKL-- 127

Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
                G      GWG       +  ++L+   + ++ ++ C   +     + T     CA
Sbjct: 128 -----GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDC---DKAHEMKVTDA-MLCA 178

Query: 360 GF 361
           G 
Sbjct: 179 GE 180

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  112 bits (284), Expect = 1e-29
 Identities = 44/211 (20%), Positives = 72/211 (34%), Gaps = 67/211 (31%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+   L        S++CGG LV  ++V+TAAHC+            ++ +
Sbjct: 4   GHEAKPHSRPYMAFLLFKTS-GKSHICGGFLVREDFVLTAAHCL----------GSSINV 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG ++      E   Q   V+R   +P +N      DI LL+L+   D +  V P+ L 
Sbjct: 53  TLGAHNI--MERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLP 110

Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
                                 +  +  +L  V+                          
Sbjct: 111 RSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGD 170

Query: 156 ---GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
                +  +GDSGG +V         +GIVS
Sbjct: 171 PSKRKNSFSGDSGGPLVCN----GVAQGIVS 197

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 74.8 bits (185), Expect = 7e-16
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT- 311
            V+R   +P +N      DI LL+L+   D +  V P+ L      P  L+ V  + G  
Sbjct: 70  PVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINL------PRSLAEV--KPGMM 121

Query: 312 --VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             V GWG    N   +++L+   + + S ++C     +F +     +  CAG 
Sbjct: 122 CSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKC---IARFKNYIPFTQ-ICAGD 170

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  111 bits (281), Expect = 3e-29
 Identities = 52/238 (21%), Positives = 77/238 (32%), Gaps = 76/238 (31%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G + A+G++P+ V L        S  CGG+L + + V+TAAHCV         ++ ++  
Sbjct: 4   GTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCV-----SGSGNNTSITA 50

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
             G                +  +V   P F    Y  D AL++L+  +      +P    
Sbjct: 51  TGGVVDLQ----SSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPI-----NQPTLKI 101

Query: 143 DDSTAP----------------------LQLSAVE--GTSVCNGDSGGGMVFKIDS---A 175
             +TA                       L  + V     + C   S   +V   +    A
Sbjct: 102 ATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVA--NEMICA 159

Query: 176 WYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKI-DSAWYLRGIVS 232
            Y                 DT            C GDSGG M  K     W   GIVS
Sbjct: 160 GYDTKQE------------DT------------CQGDSGGPMFRKDNADEWVQVGIVS 193

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 77.6 bits (192), Expect = 7e-17
 Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 15/115 (13%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
           V     +V   P F    Y  D AL++L+  +      +P      +TA           
Sbjct: 63  VKVRSTKVLQAPGFTKETYGKDWALIKLAQPI-----NQPTLKIATTTAY------NQGT 111

Query: 310 GTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
            TV GWG   E       L  A +P VS   C   +   F    ++   CAG+  
Sbjct: 112 FTVAGWGANREGGSQQRYLLKANVPFVSDAAC--RSSSSFILVANEM-ICAGYDT 163

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  111 bits (281), Expect = 3e-29
 Identities = 49/246 (19%), Positives = 78/246 (31%), Gaps = 88/246 (35%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G K  +   PW VA+         Y+CGG L+  ++VITAAHC +              +
Sbjct: 4   GYKCEKNSQPWQVAVIN------EYLCGGVLIDPSWVITAAHCYSNN----------YQV 47

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
            LG+ +  +  DE   Q + V++   +P +              ++  D+ LL LS   D
Sbjct: 48  LLGRNNLFK--DEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPAD 105

Query: 132 YSMYVRPVCL---------------W-----DDSTAPLQLSAVE---------------- 155
            +  V+ + L               W      +      L  V                 
Sbjct: 106 ITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDN 165

Query: 156 -------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VV 201
                        G   C GDSGG ++        L+GI S      G   C       +
Sbjct: 166 VTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSG-----GATPCAKPKTPAI 216

Query: 202 FTDVAN 207
           +  +  
Sbjct: 217 YAKLIK 222

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 24/123 (19%)

Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
            V++   +P +              ++  D+ LL LS   D +  V+ + L         
Sbjct: 65  LVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKV-- 122

Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
                G      GWG        VS +L+   + ++S+++C+    + +    +D   CA
Sbjct: 123 -----GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCI----ETYKDNVTDVMLCA 173

Query: 360 GFR 362
           G  
Sbjct: 174 GEM 176

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  111 bits (280), Expect = 4e-29
 Identities = 43/211 (20%), Positives = 70/211 (33%), Gaps = 65/211 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+KT   Q PW VA+ RT     S  CGG+++S  +V+TAAHCV  +        +T+VI
Sbjct: 3   GEKTDIKQVPWTVAV-RTYPGEESLTCGGAILSQWFVLTAAHCVFDQ------KPETIVI 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMY-VRPVCL 141
                      ++ G ++           +       DIA+L+LS  +       +P  L
Sbjct: 56  QYE---STNLWEDPG-KSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKL 111

Query: 142 ---------------------WDDSTAPLQLSAVE------------------------- 155
                                         L + +                         
Sbjct: 112 PDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCA 171

Query: 156 ---GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
              G S+ +GD+G   V +      L G+ +
Sbjct: 172 QKVGVSLESGDAGDPTVQQ----DTLVGVAA 198

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 10/113 (8%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMY-VRPVCLWDDSTAPLQLSAVEGR 308
                        +       DIA+L+LS  +       +P  L D    P       G 
Sbjct: 68  KSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRP-----KTGS 122

Query: 309 DGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG 360
           D  V G+G     D    +LK A + +V   +C     ++   F S + FCA 
Sbjct: 123 DVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDEC---RTKYGPIFLSLQVFCAQ 172

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  111 bits (280), Expect = 5e-29
 Identities = 50/234 (21%), Positives = 76/234 (32%), Gaps = 71/234 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +    + P+ VALY     + +  C G+L++  +V+TAAHC          D   + I
Sbjct: 4   GDECNINEHPFLVALYT--SASSTIHCAGALINREWVLTAAHC----------DRRNIRI 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG  H     +E         +     T   +    DI L++L   V YS ++ PV L 
Sbjct: 52  KLGM-HSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLP 110

Query: 142 --------------W---DDSTAPLQLSAVE----------------------------- 155
                         W     +T P                                    
Sbjct: 111 SRSRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILK 170

Query: 156 -GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
            G   C+GDSGG ++        + GIV+      G   C       V+T V +
Sbjct: 171 GGRDTCHGDSGGPLICN----GEMHGIVAG-----GSEPCGQHLKPAVYTKVFD 215

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRD 309
           +     +     T   +    DI L++L   V YS ++ PV L   S          G  
Sbjct: 67  IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGV-------GSR 119

Query: 310 GTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
             ++GWG        +      + IV H+ C    P +        T CAG 
Sbjct: 120 CRIMGWGKISTTTYPDVPHCTNIFIVKHKWC---EPLYPWVPADSRTLCAGI 168

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  111 bits (279), Expect = 5e-29
 Identities = 44/212 (20%), Positives = 67/212 (31%), Gaps = 68/212 (32%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+   L   +       CGG L+  ++V+TAAHC             ++ +
Sbjct: 4   GHEAKPHSRPYMAYLMIWDQ-KSLKRCGGFLIRDDFVLTAAHCW----------GSSINV 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCL- 141
            LG ++  +   E   Q   VKR   +P +N  N+  DI LLQL      +  V+P+ L 
Sbjct: 53  TLGAHNIKE--QEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLP 110

Query: 142 --------------------WDDSTAPLQLSAVE-------------------------- 155
                                        L  V+                          
Sbjct: 111 SNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVG 170

Query: 156 ----GTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
                 +   GDSGG +V         +GIVS
Sbjct: 171 DPEIKKTSFKGDSGGPLVCN----KVAQGIVS 198

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 80.6 bits (200), Expect = 7e-18
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE-GRDGT 311
            VKR   +P +N  N+  DI LLQL      +  V+P+ L      P   + V+ G+  +
Sbjct: 70  PVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRL------PSNKAQVKPGQTCS 123

Query: 312 VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
           V GWG      + S  L+   M +   ++C          + S    C G   
Sbjct: 124 VAGWGQTAPLGKHSHTLQEVKMTVQEDRKC---ESDLRHYYDSTIELCVGDPE 173

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  111 bits (280), Expect = 5e-29
 Identities = 52/239 (21%), Positives = 78/239 (32%), Gaps = 77/239 (32%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++      P+  +L R    N S++CGG LV   +V+TAAHC+ ++          L +
Sbjct: 4   GREVIPHSRPYMASLQR----NGSHLCGGVLVHPKWVLTAAHCLAQRM-------AQLRL 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLG-DIALLQLSSDVDYSMYVRPVCL 141
            LG +       +       +K    +P +     L  D+ALLQL   V  S  +RP+ L
Sbjct: 53  VLGLHTL-----DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLAL 107

Query: 142 ---------------------WDDSTAPLQLSAVE------------------------- 155
                                         L  ++                         
Sbjct: 108 PSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVC 167

Query: 156 ------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDVAN 207
                   + C GDSGG +V        L G++S        RVC       V T VA 
Sbjct: 168 LAADSKDQAPCKGDSGGPLVCG--KGRVLAGVLSF-----SSRVCTDIFKPPVATAVAP 219

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 253 DVKRVHIYPTFNSSNYLG-DIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGT 311
            +K    +P +     L  D+ALLQL   V  S  +RP+ L                 GT
Sbjct: 67  HIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVV--------AAGT 118

Query: 312 ---VIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
              + GWG   +  R+S  L+   + ++  + C  +N +F++   S    C   
Sbjct: 119 RCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMC--NNSRFWNGSLSPSMVCLAA 170

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  110 bits (278), Expect = 1e-28
 Identities = 58/233 (24%), Positives = 89/233 (38%), Gaps = 55/233 (23%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G    +   PW VA+Y        ++CGG L+  N+V+TAAHC            D   +
Sbjct: 4   GFNCEKNSQPWQVAVYY----QKEHICGGVLLDRNWVLTAAHCY----------VDQYEV 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
           +LGK     F +E   Q++ V +   +P FN S           ++  D+ LL+LS   D
Sbjct: 50  WLGKNKL--FQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPAD 107

Query: 132 YSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMV--FKIDSAWYLRGIVSITVARD 189
            +  V+P+ L      P               SG G +   +      L+  V IT+  +
Sbjct: 108 ITDVVKPIALPTKEPKPGSKCLA---------SGWGSITPTRWQKPDDLQC-VFITLLPN 157

Query: 190 GLRVCDTKHYVVFTDV----------ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
               C   +    TDV           + C  DSGG ++        L+G  S
Sbjct: 158 --ENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTS 204

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 24/122 (19%)

Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
            V +   +P FN S           ++  D+ LL+LS   D +  V+P+ L      P  
Sbjct: 67  LVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKP-- 124

Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
                G      GWG       +  ++L+   + ++ ++ C      +  + T     CA
Sbjct: 125 -----GSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENC---AKVYLQKVTDV-MLCA 175

Query: 360 GF 361
           G 
Sbjct: 176 GE 177

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  109 bits (276), Expect = 1e-28
 Identities = 56/246 (22%), Positives = 84/246 (34%), Gaps = 86/246 (34%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +  +   PW V +          VCGG LV   +V+TAAHC+  K           VI
Sbjct: 4   GWECEKHSQPWQVLVAS----RGRAVCGGVLVHPQWVLTAAHCIRNK----------SVI 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
            LG++    F  E   Q  QV     +P ++ S           +   D+ LL+LS   +
Sbjct: 50  LLGRH--SLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAE 107

Query: 132 YSMYVRPVCL---------------W-----DDSTAPLQLSAVE---------------- 155
            +  V+ + L               W     ++   P +L  V+                
Sbjct: 108 LTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQK 167

Query: 156 -------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VV 201
                        G S C+GDSGG +V        L+GI S      G   C       +
Sbjct: 168 VTKFMLCAGRWTGGKSTCSGDSGGPLVCN----GVLQGITSW-----GSEPCALPERPSL 218

Query: 202 FTDVAN 207
           +T V +
Sbjct: 219 YTKVVH 224

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 24/122 (19%)

Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
            V     +P ++ S           +   D+ LL+LS   + +  V+ + L     A   
Sbjct: 67  QVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPAL-- 124

Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
                G      GWG    E     ++L+   + ++S+  C   +P    + T     CA
Sbjct: 125 -----GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHP---QKVTKF-MLCA 175

Query: 360 GF 361
           G 
Sbjct: 176 GR 177

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  112 bits (281), Expect = 3e-28
 Identities = 63/249 (25%), Positives = 89/249 (35%), Gaps = 77/249 (30%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+ T+ G+WPW V+L      + +++CGGSL+S ++V+TAAHC      ++        +
Sbjct: 121 GRDTSLGRWPWQVSLR----YDGAHLCGGSLLSGDWVLTAAHCF----PERNRVLSRWRV 172

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTF------NSSNYLGDIALLQLSSDVDYSMYV 136
           + G   Q             V+ V  +  +      NS     DIAL+ LSS +  + Y+
Sbjct: 173 FAGAVAQASPH----GLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYI 228

Query: 137 RPVCL-----------------W----DDSTAPLQLSAVE----GTSVCNG-DSGGGMVF 170
           +PVCL                 W            L           VCNG D  G  + 
Sbjct: 229 QPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIK 288

Query: 171 KIDS---AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMV----FKIDS 223
                  A Y  G +            D             C GDSGG  V         
Sbjct: 289 --PKMFCAGYPEGGI------------DA------------CQGDSGGPFVCEDSISRTP 322

Query: 224 AWYLRGIVS 232
            W L GIVS
Sbjct: 323 RWRLCGIVS 331

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 77.5 bits (191), Expect = 5e-16
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 14/124 (11%)

Query: 245 TKHYVVFTDVKRVHIYPTF------NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTA 298
              + +   V+ V  +  +      NS     DIAL+ LSS +  + Y++PVCL     A
Sbjct: 180 ASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA 239

Query: 299 PLQLSAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETF 357
                 V+G+  TV GWG      + +  L+ A +PI+S+  C  +   F+      + F
Sbjct: 240 L-----VDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC--NGADFYGNQIKPKMF 292

Query: 358 CAGF 361
           CAG+
Sbjct: 293 CAGY 296

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  108 bits (273), Expect = 5e-28
 Identities = 54/246 (21%), Positives = 82/246 (33%), Gaps = 86/246 (34%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +  +   PW VA+Y        + CGG LV   +V+TAAHC++              I
Sbjct: 4   GWECEKHSKPWQVAVYH----QGHFQCGGVLVHPQWVLTAAHCMSDD----------YQI 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
           +LG+++  +  DE   Q  QV    + P F+ S           +   D+ LL+L+    
Sbjct: 50  WLGRHNLSK--DEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPAR 107

Query: 132 YSMYVRPVCL---------------W-----DDSTAPLQLSAVE---------------- 155
            +  V+ + L               W       +     L  VE                
Sbjct: 108 ITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEK 167

Query: 156 -------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VV 201
                          S+C GDSGG ++         +GI S      G   C   +   V
Sbjct: 168 MTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSW-----GYSECADFNDNFV 218

Query: 202 FTDVAN 207
           FT V  
Sbjct: 219 FTKVMP 224

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 24/122 (19%)

Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 301
            V    + P F+ S           +   D+ LL+L+     +  V+ + L         
Sbjct: 67  QVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKL-- 124

Query: 302 LSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA 359
                G      GWG      +R S  L+   + + S+++C     + + +  ++   CA
Sbjct: 125 -----GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCA----RAYPEKMTEFVLCA 175

Query: 360 GF 361
             
Sbjct: 176 TH 177

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  107 bits (270), Expect = 1e-27
 Identities = 58/247 (23%), Positives = 86/247 (34%), Gaps = 87/247 (35%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +  +   PW  ALY        + CGG LV   +V+TAAHC+          SD   +
Sbjct: 4   GWECEQHSQPWQAALYHFST----FQCGGILVHRQWVLTAAHCI----------SDNYQL 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD 131
           +LG++  + F DE   Q   V     +P FN S           +Y  D+ LL+L+   D
Sbjct: 50  WLGRH--NLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPAD 107

Query: 132 -YSMYVRPVCL---------------W-----DDSTAPLQLSAVE--------------- 155
             +  V+ V L               W     ++ + P  L  V+               
Sbjct: 108 TITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQ 167

Query: 156 --------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-V 200
                         G   C GDSGG ++        L+G+ S      G   C T +   
Sbjct: 168 KVTDFMLCVGHLEGGKDTCVGDSGGPLMCD----GVLQGVTSW-----GYVPCGTPNKPS 218

Query: 201 VFTDVAN 207
           V   V +
Sbjct: 219 VAVRVLS 225

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 25/123 (20%)

Query: 253 DVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVD-YSMYVRPVCLWDDSTAPL 300
            V     +P FN S           +Y  D+ LL+L+   D  +  V+ V L  +     
Sbjct: 67  HVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEV- 125

Query: 301 QLSAVEGRDGTVIGWGY--DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
                 G      GWG    EN    ++L+   + I+ + +C         + T     C
Sbjct: 126 ------GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDEC---KKAHVQKVTDF-MLC 175

Query: 359 AGF 361
            G 
Sbjct: 176 VGH 178

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  102 bits (257), Expect = 8e-26
 Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 58/233 (24%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+K+   + PW V +      +    CGGS+++ N+VITAA CV             + I
Sbjct: 4   GKKSDITKEPWAVGVLV----DEKPFCGGSILTANFVITAAQCV------DGTKPSDISI 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYS-MYVRPVCL 141
           + G  ++          +   K++     ++      + A+++    +       + + L
Sbjct: 54  HYGSSYR-----TTKGTSVMAKKI-YIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIEL 107

Query: 142 WDDSTAPLQLSAVEGTSVC------NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
                 P  L   E  +        + +         + +  L    + TV     + C+
Sbjct: 108 ------PSLLYDPEPDTSVLVSGWGSTNFKSL-----EYSGDLME-ANFTVVDR--KSCE 153

Query: 196 TKHYVVFTDVANV----------------CNGDSGGGMVFKIDSAWYLRGIVS 232
            + Y        +                  GD+G   V        L G+ S
Sbjct: 154 -EQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQN----GTLVGVAS 201

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score = 69.5 bits (171), Expect = 6e-14
 Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 12/115 (10%)

Query: 254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYS-MYVRPVCLWDDSTAPLQLSAVEGRDGTV 312
            K++     ++      + A+++    +       + + L       L           V
Sbjct: 69  AKKI-YIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIEL-----PSLLYDPEPDTSVLV 122

Query: 313 IGWGY--DENDRVSEELKMAIMPIVSHQQC--LWSNPQFFSQFTSDETFCAGFRN 363
            GWG    ++   S +L  A   +V  + C   +   +          FCAG   
Sbjct: 123 SGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGV-FCAGGEY 176

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  107 bits (267), Expect = 2e-25
 Identities = 63/257 (24%), Positives = 88/257 (34%), Gaps = 72/257 (28%)

Query: 2   CYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVIT 61
              D     V   K    V  G       WPW V+L    G    + CGG+L+S  +V+T
Sbjct: 544 PSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFG---MHFCGGTLISPEWVLT 600

Query: 62  AAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDI 121
           AAHC+ K P        +  + LG + +     E  VQ  +V R+ + PT        DI
Sbjct: 601 AAHCLEKSP-----RPSSYKVILGAHQEVNL--EPHVQEIEVSRLFLEPTRK------DI 647

Query: 122 ALLQLSSDVDYSMYVRPVCL-----------------W-----DDSTAPLQLSAVE---- 155
           ALL+LSS    +  V P CL                 W           L+ + +     
Sbjct: 648 ALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIEN 707

Query: 156 -------------------------GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDG 190
                                    GT  C GDSGG +V      + L+G+ S      G
Sbjct: 708 KVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSW-----G 762

Query: 191 LRVCDTKHYVVFTDVAN 207
           L         V+  V+ 
Sbjct: 763 LGCARPNKPGVYVRVSR 779

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 74.7 bits (183), Expect = 8e-15
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG 307
           +V   +V R+ + PT        DIALL+LSS    +  V P CL             + 
Sbjct: 629 HVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACL-----PSPNYVVADR 677

Query: 308 RDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
            +  + GWG  +    +  LK A +P++ ++ C  +  +F +        CAG 
Sbjct: 678 TECFITGWGETQGTFGAGLLKEAQLPVIENKVC--NRYEFLNGRVQSTELCAGH 729

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 72.5 bits (179), Expect = 2e-16
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++  +   PW VA+Y       S+ CGG LV+  +V+TAAHC           +D   +
Sbjct: 4   GRECEKNSHPWQVAIYHYS----SFQCGGVLVNPKWVLTAAHCK----------NDNYEV 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS 115
           +LG+++  +  +E   Q   V     +P FN S
Sbjct: 50  WLGRHNLFE--NENTAQFFGVTADFPHPGFNLS 80

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 264 NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGY----DE 319
           +  +Y  D+ LL+L S    +  V+ + L      P Q     G      GWG      +
Sbjct: 2   DGKDYSHDLMLLRLQSPAKITDAVKVLEL------PTQ-EPELGSTCEASGWGSIEPGPD 54

Query: 320 NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
           +    +E++   + ++ +  C  ++P    + T     CAG+
Sbjct: 55  DFEFPDEIQCVQLTLLQNTFCADAHPD---KVTES-MLCAGY 92

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 55/122 (45%)

Query: 113 NSSNYLGDIALLQLSSDVDYSMYVRPVCL---------------W-------DDSTAPLQ 150
           +  +Y  D+ LL+L S    +  V+ + L               W       DD   P +
Sbjct: 2   DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDE 61

Query: 151 LSAVE-----------------------------GTSVCNGDSGGGMVFKIDSAWYLRGI 181
           +  V+                             G   C GDSGG ++         +GI
Sbjct: 62  IQCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICN----GMWQGI 117

Query: 182 VS 183
            S
Sbjct: 118 TS 119

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 54.2 bits (130), Expect = 9e-09
 Identities = 31/205 (15%), Positives = 63/205 (30%), Gaps = 33/205 (16%)

Query: 29  GQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
              P++   Y T G      C G+L++ N ++T  HCV            ++        
Sbjct: 15  RVAPYNSIAYITFG---GSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPG----- 66

Query: 89  QHQFSDEGGVQNKQVKRVHIYP-TFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTA 147
                      +  +   ++     N+     D A+++  +++  +  V    +   +  
Sbjct: 67  --MNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNT--VGYRSIRQVTNL 122

Query: 148 PLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVAN 207
                 + G       S G       S W + G V+           DT           
Sbjct: 123 TGTTIKISGYPGDKMRSTGK-----VSQWEMSGSVTREDTNLAYYTIDT----------- 166

Query: 208 VCNGDSGGGMVFKIDSAWYLRGIVS 232
             +G+SG  M+   D    + G+ +
Sbjct: 167 -FSGNSGSAML---DQNQQIVGVHN 187

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 26/206 (12%), Positives = 52/206 (25%), Gaps = 27/206 (13%)

Query: 31  WPWHVALYRTEGINLSYVCGGSLV---SVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKY 87
            P    ++        +VC  ++V   + + V TA HC+      +   +          
Sbjct: 6   SPHIGKVF-FSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAP----- 59

Query: 88  HQHQFSDEGGVQNKQVKRVHIYPTF-NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDST 146
                  E GV     + +     + N  ++  D A   L +    ++  +         
Sbjct: 60  AYDYGESEHGVWA--AEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTA----- 112

Query: 147 APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVA 206
           +P+  +   G             F         G  +        +              
Sbjct: 113 SPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPMGSSTQGIPC---------- 162

Query: 207 NVCNGDSGGGMVFKIDSAWYLRGIVS 232
           N+  G SGG       +        S
Sbjct: 163 NMTGGSSGGPWFLGNGTGGAQNSTNS 188

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 15/105 (14%)

Query: 30  QWPW-HVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
              +  V   + E    +++  G +V  + ++T  H V         D   L  +    +
Sbjct: 16  NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVV----DATHGDPHALKAFPSAIN 71

Query: 89  QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYS 133
           Q  + + GG   +Q+            +  GD+A+++ S +    
Sbjct: 72  QDNYPN-GGFTAEQI---------TKYSGEGDLAIVKFSPNEQNK 106

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query: 155 EGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
            G S C GDSGG +V K + AW L GIVS
Sbjct: 38  SGVSSCMGDSGGPLVCKKNGAWTLVGIVS 66

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 15/24 (62%), Positives = 17/24 (70%)

Query: 209 CNGDSGGGMVFKIDSAWYLRGIVS 232
           C GDSGG +V K + AW L GIVS
Sbjct: 43  CMGDSGGPLVCKKNGAWTLVGIVS 66

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 61/366 (16%), Positives = 105/366 (28%), Gaps = 104/366 (28%)

Query: 66  VTKKPYD-----KPVDSDTLVIY---LGKYHQ--HQFSDEGGVQN-----KQVKRVHIYP 110
           ++K+  D     K   S TL ++   L K  +   +F +E    N       +K     P
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 111 TFNSSNYLGDIALLQLSSDVDYSMYV-RPVCLWDDSTAPLQLSAVEGTSVCNGDSGGG-- 167
           +  +  Y+     L   + V     V R         A L+L   +   +  G  G G  
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GVLGSGKT 164

Query: 168 ---------------MVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVC--- 209
                          M FKI   W       + +       C++    V   +  +    
Sbjct: 165 WVALDVCLSYKVQCKMDFKI--FW-------LNLKN-----CNSPE-TVLEMLQKLLYQI 209

Query: 210 ------NGDSGGGMVFKIDSA-WYLRGIVSITVARDGL----RVCDTKHYVVF------- 251
                   D    +  +I S    LR ++      + L     V + K +  F       
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 252 -----------------TDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWD 294
                            T +   H   T           LL    D       R V    
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDLPREVL--- 323

Query: 295 DSTAPLQLS--AVEGRDG--TVIGWGYDENDRVSEELKMAI--MPIVSHQQCLWSNPQFF 348
            +T P +LS  A   RDG  T   W +   D+++  ++ ++  +    +++         
Sbjct: 324 -TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----L 378

Query: 349 SQFTSD 354
           S F   
Sbjct: 379 SVFPPS 384

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 35/202 (17%)

Query: 30  QWPWH-VALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
              +  V   + E    +++  G +V  + ++T  H V         D   L  +    +
Sbjct: 16  NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVV----DATHGDPHALKAFPSAIN 71

Query: 89  QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
           Q  + + GG   +Q+            +  GD+A+++ S +              +   P
Sbjct: 72  QDNYPN-GGFTAEQIT---------KYSGEGDLAIVKFSPNEQNKHI-------GEVVKP 114

Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANV 208
             +S    T V            I    Y       T+     ++   K   +  D  + 
Sbjct: 115 ATMSNNAETQV--NQ-------NITVTGYPGDKPVATMWESKGKITYLKGEAMQYD-LST 164

Query: 209 CNGDSGGGMVFKIDSAWYLRGI 230
             G+SG  +    +    + GI
Sbjct: 165 TGGNSGSPV---FNEKNEVIGI 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	100.0
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.97
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.96
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.92
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.92
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.91
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.91
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.9
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.89
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.89
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.88
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.86
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	99.84
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	99.83
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	99.83
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	99.83
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	99.82
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	99.82
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	99.82
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	99.81
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	99.81
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	99.81
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	99.81
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	99.81
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	99.81
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	99.81
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	99.8
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	99.8
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	99.8
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	99.8
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	99.8
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	99.8
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	99.8
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	99.8
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	99.8
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	99.8
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	99.8
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	99.8
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	99.79
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	99.79
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	99.79
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	99.79
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	99.79
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	99.79
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	99.79
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	99.79
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	99.79
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	99.79
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	99.79
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	99.79
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	99.79
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	99.79
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	99.79
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	99.79
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	99.78
1md8_A	329	C1R complement serine protease; innate immunity, a	99.78
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	99.78
1elv_A	333	Complement C1S component; trypsin-like serin prote	99.78
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	99.78
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	99.78
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	99.78
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	99.78
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	99.78
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	99.78
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	99.78
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	99.78
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.77
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	99.77
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	99.77
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	99.77
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	99.77
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	99.77
1aut_C	250	Activated protein C; serine proteinase, plasma cal	99.77
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	99.77
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.76
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	99.76
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	99.76
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.76
2aiq_A	231	Protein C activator; snake venom serine proteinase	99.76
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	99.76
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	99.76
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	99.75
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	99.75
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	99.74
1gpz_A	399	Complement C1R component; hydrolase, activation, i	99.74
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	99.74
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	99.74
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	99.74
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	99.73
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	99.73
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	99.72
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	99.72
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.72
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	99.72
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	99.72
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	99.71
1a7s_A	225	Heparin binding protein; serine protease homolog,	99.7
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	99.7
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	99.69
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.66
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	99.65
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	99.65
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	99.63
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.62
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.61
3k6y_A	237	Serine protease, possible membrane-associated seri	99.6
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	99.57
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.53
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.49
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.47
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.46
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.45
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.43
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.4
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.39
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.36
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.33
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.29
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.29
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.13
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.1
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.09
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.08
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.05
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.03
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.92
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.82
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	98.7
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.63
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	98.59
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	98.49
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	98.33
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.28
2w5e_A	163	Putative serine protease; coiled coil, transmembra	98.2
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	98.08
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	98.07
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	98.04
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	97.99
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	97.85
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	97.85
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	97.69
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	97.65
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.6
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	96.94
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	96.63
3k6y_A	237	Serine protease, possible membrane-associated seri	96.33
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	96.32
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	95.95
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	95.49
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	94.74
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	94.03
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	93.85
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	93.57
3syj_A	1011	Adhesion and penetration protein autotransporter;	93.16
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	92.99
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	92.71
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	92.15
1lvm_A	229	Catalytic domain of the nuclear inclusion protein	91.18
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	91.16
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	91.05
1hpg_A	187	Glutamic acid specific protease; serine protease,	87.18
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	86.04
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	85.64
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	82.6

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=1.6e-44  Score=317.10  Aligned_cols=227  Identities=27%  Similarity=0.452  Sum_probs=175.1

Q ss_pred             CCcccc-CCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEece
Q psy15989          8 CGTVVY-NKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGK   86 (363)
Q Consensus         8 CG~~~~-~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~   86 (363)
                      ||++.. +..+.||+||++|.+++|||||+|+........++||||||+++||||||||+.+        ...+.|++|.
T Consensus         1 cg~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~--------~~~~~V~~G~   72 (251)
T 1pyt_D            1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISN--------TLTYRVALGK   72 (251)
T ss_dssp             CCCCSSCCCSSSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT--------TCCEEEEESC
T ss_pred             CCCCccCCccCCccCCCEECCCCCCCceEEEEEEcCCCcceEEEeEEecCCEEEECHHHhCC--------CceEEEEEcc
Confidence            787632 2345799999999999999999998654434578999999999999999999963        3568999999


Q ss_pred             ecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCc
Q psy15989         87 YHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGG  166 (363)
Q Consensus        87 ~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~  166 (363)
                      +++.... +...+.+.|+++++||+|+..+..||||||+|++|+.|++.|+|||||.....      ......|. .+||
T Consensus        73 ~~~~~~~-~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~Gw  144 (251)
T 1pyt_D           73 NNLEVED-EAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSL------LPQDYPCF-VTGW  144 (251)
T ss_dssp             SBTTCSC-CSSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCC------CCTTCEEE-ECBC
T ss_pred             cccccCC-CCCcEEEEEEEEEECCCCCCCCCCCCEEEEEECCCcccCCCeeeeEcCCCccc------CCCCCEEE-EEec
Confidence            9875432 24457889999999999999889999999999999999999999999976541      11223455 6888


Q ss_pred             cceEEecCeeEEeeeeEEEEeecCeeecccc----------ceEEec-CCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        167 GMVFKIDSAWYLRGIVSITVARDGLRVCDTK----------HYVVFT-DVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~~-~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      |.+...+.  ....|+...+++++...|...          +.|... ...+.|.|||||||++..+++|+|+||+|++.
T Consensus       145 G~~~~~~~--~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~  222 (251)
T 1pyt_D          145 GRLYTNGP--IAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFGS  222 (251)
T ss_dssp             CCSSCCSC--CCSBCBCCEEECBCHHHHTSTTTTTTTCCTTEEEECCSCSSCCCCSCTTCEEEEESSSSEEEEEEEEECC
T ss_pred             ccCCCCCC--cccchheeEeEeeCHHHcchhhccCCCcCCCeEEecCCCCCccCCCCCCCceEEEECCCEEEEEEEEECC
Confidence            87543221  123466777888888889642          234433 33589999999999998889999999999942


Q ss_pred             ecCcceecC-CCcceEEEeeeE
Q psy15989        236 ARDGLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       236 ~~~g~~~c~-~~~~~v~~~V~~  256 (363)
                          ...|. ...+.+|++|..
T Consensus       223 ----~~~C~~~~~p~vyt~V~~  240 (251)
T 1pyt_D          223 ----GLSCNTFKKPTVFTRVSA  240 (251)
T ss_dssp             ----SSCTTBTTBCEEEEEGGG
T ss_pred             ----CCCCCCCCCCeEEEEHHH
Confidence                12465 367899999875

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=1.2e-44  Score=316.73  Aligned_cols=222  Identities=29%  Similarity=0.475  Sum_probs=171.2

Q ss_pred             CCccccC---CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEe
Q psy15989          8 CGTVVYN---KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYL   84 (363)
Q Consensus         8 CG~~~~~---~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~   84 (363)
                      ||.+...   ....||+||.+|.+++|||||+|+...   ..++||||||+++||||||||+..         ..+.|++
T Consensus         1 cg~~~~~p~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~---~~~~CgGtLI~~~~VLTAAHC~~~---------~~~~v~~   68 (245)
T 1t8o_A            1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKT---GFHFCGGSLINENWVVTAAHCGVT---------TSDVVVA   68 (245)
T ss_dssp             CCCCSSCCCCC----CBTCEECCTTSSTTEEEEECTT---CCEEEEEEEEETTEEEECGGGCCC---------TTSEEEE
T ss_pred             CCCCcccccccCCCceECCEECCCCCCCceEEEEcCC---CCeEEEEEEeeCCEEEEcHHhCcC---------CCcEEEE
Confidence            7765322   123599999999999999999998643   268999999999999999999864         3467999


Q ss_pred             ceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCC
Q psy15989         85 GKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS  164 (363)
Q Consensus        85 G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~  164 (363)
                      |.+++....  ...+.+.|.++++||+|+..+..||||||+|++|+.|++.|+|||||.....      ......|. .+
T Consensus        69 G~~~~~~~~--~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~------~~~~~~~~-v~  139 (245)
T 1t8o_A           69 GEFDQGSSS--EKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDD------FAAGTTCV-TT  139 (245)
T ss_dssp             SCSBTTCSS--SCCEEEEEEEEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCC------CCTTCEEE-EE
T ss_pred             eeeecCCCC--CCcEEEEEEEEEeCCCCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCccC------CCCCCEEE-EE
Confidence            998876543  4568899999999999999899999999999999999999999999976541      11123455 67


Q ss_pred             CccceEEecCeeEEeeeeEEEEeecCeeeccc--------cceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEe
Q psy15989        165 GGGMVFKIDSAWYLRGIVSITVARDGLRVCDT--------KHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVA  236 (363)
Q Consensus       165 G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~--------~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~  236 (363)
                      |||.....+. .....|+...+++++...|..        .+.|......+.|.|||||||++..+++|+|+||+|++  
T Consensus       140 GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g--  216 (245)
T 1t8o_A          140 GWGLTRYTNA-NTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWG--  216 (245)
T ss_dssp             ESCCSCC--C-CCCSBCEEEEEEEECHHHHHHHHGGGCCTTEEEEECSSCBCCTTCTTCEEEEEETTEEEEEEEEEEC--
T ss_pred             EeCCCCCCCC-CCcchheEEEEeeEcchhhhHhhcCcCCCceEEccCCCCccCcccCcCCEEEEECCEEEEEEEEEeC--
Confidence            8886543221 123456778888888888963        23466656678999999999999999999999999994  


Q ss_pred             cCcceecCCCcceEEEeeeE
Q psy15989        237 RDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       237 ~~g~~~c~~~~~~v~~~V~~  256 (363)
                         ..+|....+.+|++|..
T Consensus       217 ---~~c~~~~~p~vyt~V~~  233 (245)
T 1t8o_A          217 ---SSTCSTSTPGVYARVTA  233 (245)
T ss_dssp             ---CTTCCTTSEEEEEEGGG
T ss_pred             ---CCCCCCCCCEEEEEHHH
Confidence               34555577899999865

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=3.1e-44  Score=320.19  Aligned_cols=232  Identities=23%  Similarity=0.411  Sum_probs=174.4

Q ss_pred             CCCCCccccCCccceeecCeecCCCCCcceEEEEEeeCC-ceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEE
Q psy15989          5 DVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGI-NLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIY   83 (363)
Q Consensus         5 ~~~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~-~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~   83 (363)
                      +..||.+   ....||+||.+|.+++|||||+|+..... ...++||||||+++||||||||+.....  ......+.|+
T Consensus        11 ~~~CG~~---~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~--~~~~~~~~V~   85 (278)
T 2olg_A           11 PNDCGYQ---VEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVL--RVVGALNKVR   85 (278)
T ss_dssp             CSSCSCC---CCCCCSCCSSBCCTTSSTTEEEEEEECTTCCEEEEEEEEECSSSEEEECGGGTSTHHH--HHTCEEEEEE
T ss_pred             hhHhCCC---CCCCceECCEECCCCCCCceEEEEEecCCCCcceeEEEEEEeCCEEEEhHHhCCCccc--ccccceeEEE
Confidence            5589975   34679999999999999999999876422 2478999999999999999999964200  0012468899


Q ss_pred             eceecccccCC---------CCCceeeeeeEEEECCCCCCCCC--CCCeEEEEeCCcccCCCCccceEecCCCCCCceee
Q psy15989         84 LGKYHQHQFSD---------EGGVQNKQVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLS  152 (363)
Q Consensus        84 ~G~~~~~~~~~---------~~~~~~~~V~~i~~hp~y~~~~~--~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~  152 (363)
                      +|.+++....+         ....+.+.|+++++||+|+..+.  .||||||||++|+.|+++|+|||||.....     
T Consensus        86 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~-----  160 (278)
T 2olg_A           86 LGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEE-----  160 (278)
T ss_dssp             ESCSBTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCC-----
T ss_pred             eCcccCCCCccccccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCCC-----
Confidence            99998764321         12457889999999999987765  799999999999999999999999976541     


Q ss_pred             eeeceeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccc-----------eEEec-CCCccCcccccceeEEE
Q psy15989        153 AVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH-----------YVVFT-DVANVCNGDSGGGMVFK  220 (363)
Q Consensus       153 ~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~-----------~~~~~-~~~~~C~gdsGgpl~~~  220 (363)
                       ......|. .+|||.+....   ....++...+++++...|...+           .|... ...+.|.|||||||++.
T Consensus       161 -~~~g~~~~-v~GWG~t~~~~---~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGGPL~~~  235 (278)
T 2olg_A          161 -VQVGQRLT-VVGWGRTETGQ---YSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAE  235 (278)
T ss_dssp             -CCTTCEEE-EEESCCSSSCC---CCSBCEEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECCTTCTTCCCCCTTCEEEEE
T ss_pred             -cCCCCEEE-EEcCCcCCCCC---ccchhhcccccccCHHHHHHHhccccccCCCceEeeecCCCCeeCCCccCcceEEE
Confidence             11123455 67888653211   2345778888999999997432           24332 34689999999999998


Q ss_pred             -EcCccEEEEEEEEEEecCcceecC-CCcceEEEeeeEE
Q psy15989        221 -IDSAWYLRGIVSITVARDGLRVCD-TKHYVVFTDVKRV  257 (363)
Q Consensus       221 -~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~~v~~~V~~i  257 (363)
                       .+++|+|+||+|++     . .|. ...+.+|++|..+
T Consensus       236 ~~~~~~~l~GIvS~g-----~-~C~~~~~p~vyt~V~~y  268 (278)
T 2olg_A          236 RANQQFFLEGLVSFG-----A-TCGTEGWPGIYTKVGKY  268 (278)
T ss_dssp             EGGGEEEEEEEEEEC-----C-BCSTTCBCEEEEEGGGG
T ss_pred             cCCCcEEEEEEEEEC-----C-CCCCCCCCcEEeEHHHH
Confidence             46789999999994     2 465 4568999998763

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=322.15  Aligned_cols=232  Identities=28%  Similarity=0.462  Sum_probs=170.8

Q ss_pred             CCCCCccccCCccceeecCeecCCCCCcceEEEEEeeC-CceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEE
Q psy15989          5 DVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEG-INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIY   83 (363)
Q Consensus         5 ~~~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~-~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~   83 (363)
                      +.+||++. ..++.||+||++|.+++|||||+|+.... ....|+||||||+++||||||||+.+..     ....+.|+
T Consensus        10 ~~~CG~~~-~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHCv~~~~-----~~~~~~v~   83 (276)
T 2vnt_A           10 KFQCGQKT-LRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP-----KKEDYIVY   83 (276)
T ss_dssp             CCCTTCCC-C-----CCSSEECCGGGSTTEEEEEEECSSSCEEEEEEEEEEETTEEEECGGGTTTCC-----CGGGEEEE
T ss_pred             CCCCCCcC-CCCCCcEECCEECCCCCCCcEEEEEEecCCCcceeEEEEEEeeCCEEEECcccccCCC-----CCccEEEE
Confidence            45899873 45578999999999999999999987643 3346899999999999999999997642     34578999


Q ss_pred             eceecccccCCCCCceeeeeeEEEECCCCCCCC--CCCCeEEEEeCCcc----cCCCCccceEecCCCCCCceeeeeece
Q psy15989         84 LGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN--YLGDIALLQLSSDV----DYSMYVRPVCLWDDSTAPLQLSAVEGT  157 (363)
Q Consensus        84 ~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~--~~nDIALl~L~~~~----~~~~~v~picL~~~~~~~~~~~~~~~~  157 (363)
                      +|.+++....  ...+.+.|+++++||+|+...  ..||||||+|+.++    .|++.|+|||||......     ..+ 
T Consensus        84 ~g~~~~~~~~--~~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~-----~~~-  155 (276)
T 2vnt_A           84 LGRSRLNSNT--QGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDP-----QFG-  155 (276)
T ss_dssp             ESCCBSSSCC--TTCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCC-----CTT-
T ss_pred             eeeeeccCCC--CceEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccccccccccccc-----ccc-
Confidence            9999887654  667899999999999998654  46899999999765    588999999998765411     112 


Q ss_pred             eeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccce----------EEe--cCCCccCcccccceeEEEEcCcc
Q psy15989        158 SVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY----------VVF--TDVANVCNGDSGGGMVFKIDSAW  225 (363)
Q Consensus       158 ~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~----------~~~--~~~~~~C~gdsGgpl~~~~~~~~  225 (363)
                      ..|. ..||+.....+. .....++...+++++...|...+.          +..  ....+.|.|||||||++..+++|
T Consensus       156 ~~~~-~~g~G~~~~~~~-~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~~~~  233 (276)
T 2vnt_A          156 TSCE-ITGFGKENSTDY-LYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRM  233 (276)
T ss_dssp             CEEE-EEESCCSSTTCS-CCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEETTEE
T ss_pred             ceEE-EEEeeccccCCC-CcchhheeeeeeEecHHHhhhhhccCcccCccceeeccCCCCCCCCCCCCCCeEEEeeCCeE
Confidence            2333 455654322111 122345566778888888975321          222  22468999999999999999999


Q ss_pred             EEEEEEEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        226 YLRGIVSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       226 ~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      +|+||+||     |..+|....+.+|++|..+
T Consensus       234 ~lvGIvS~-----G~~C~~~~~P~vyt~V~~y  260 (276)
T 2vnt_A          234 TLTGIVSW-----GRGCALKDKPGVYTRVSHF  260 (276)
T ss_dssp             EEEEEEEE-----CSSSSBTTBCEEEEEGGGG
T ss_pred             EEEEEEEE-----CCCCCCCCCCEEEEEHHHH
Confidence            99999999     4445556778999998764

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=1e-44  Score=336.27  Aligned_cols=235  Identities=23%  Similarity=0.367  Sum_probs=177.8

Q ss_pred             CCCCCccccCCccceeecC-eecCCCCCcceEEEEEeeC----CceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCc
Q psy15989          5 DVSCGTVVYNKAQPLVTYG-QKTARGQWPWHVALYRTEG----INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDT   79 (363)
Q Consensus         5 ~~~CG~~~~~~~~~rIvgG-~~a~~~~~Pw~v~l~~~~~----~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~   79 (363)
                      +..||.++......||+|| .+|..++|||||+|+....    ....++||||||+++||||||||+.....    ....
T Consensus       115 ~~~CG~~~~~~~~~rIvgG~~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~----~~~~  190 (394)
T 2b9l_A          115 PSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQS----NLDA  190 (394)
T ss_dssp             CCCTTBCCTTCSSCEEESCSSBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHGGGTT----CGGG
T ss_pred             CCCCCCCCCCCCCceeeCCccccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceecCCCC----Cccc
Confidence            4579987433345699999 8999999999999976431    12368999999999999999999975321    2367


Q ss_pred             EEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceee
Q psy15989         80 LVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSV  159 (363)
Q Consensus        80 ~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~  159 (363)
                      +.|++|.+++....+....+.+.|+++++||+|+..+..||||||+|++|+.|+++|+|||||.....      ..+ ..
T Consensus       191 ~~V~~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~------~~~-~~  263 (394)
T 2b9l_A          191 IKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQI------FDS-TE  263 (394)
T ss_dssp             EEEEESCCBTTCCCSSSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCC------CCC-SC
T ss_pred             EEEEeceeeccCCcCCCccEEEEEEEEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCcccC------ccC-CE
Confidence            99999999876543223468899999999999999889999999999999999999999999976541      112 34


Q ss_pred             ecCCCCccceEEecCeeEEeeeeEEEEeecCeeecccc---------------ceEEe-cCCCccCcccccceeEEEE--
Q psy15989        160 CNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK---------------HYVVF-TDVANVCNGDSGGGMVFKI--  221 (363)
Q Consensus       160 c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~---------------~~~~~-~~~~~~C~gdsGgpl~~~~--  221 (363)
                      |. .+|||.+...........|+.+.+++++...|...               +.|+. ...++.|.|||||||++..  
T Consensus       264 ~~-v~GWG~t~~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~g~d~C~GDSGGPLv~~~~~  342 (394)
T 2b9l_A          264 CF-ASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPLFCPDPR  342 (394)
T ss_dssp             EE-EEECCTTTTTCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBSSCSCCSSCTTCEEEEEETT
T ss_pred             EE-EEeccCccCCCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCCCCCcCCCCCcchhhEEEEcC
Confidence            55 67888643211111234577888899999999632               23443 2356899999999999973  


Q ss_pred             -cCccEEEEEEEEEEecCcceecC-CCcceEEEeeeEE
Q psy15989        222 -DSAWYLRGIVSITVARDGLRVCD-TKHYVVFTDVKRV  257 (363)
Q Consensus       222 -~~~~~l~Gi~s~~~~~~g~~~c~-~~~~~v~~~V~~i  257 (363)
                       +++|+|+||+||     |.. |. ...+.+|++|..+
T Consensus       343 ~~~~~~lvGIvS~-----G~~-C~~~~~PgVYT~V~~y  374 (394)
T 2b9l_A          343 NPSRYMQMGIVAW-----GIG-CGDENVPGVYANVAHF  374 (394)
T ss_dssp             EEEEEEEEEEESC-----TTC-CCBSSSCEEEEEGGGG
T ss_pred             CCCeEEEEEEEEE-----CCC-CCCCCCCeEEEEHHHh
Confidence             568999999999     433 54 5678999998763

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=1.3e-44  Score=324.06  Aligned_cols=228  Identities=29%  Similarity=0.497  Sum_probs=165.8

Q ss_pred             cceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCC
Q psy15989         17 QPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEG   96 (363)
Q Consensus        17 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~   96 (363)
                      +.||+||.+|.+++|||||+|+....  ..++||||||+++||||||||+.............+.|++|.+++.... ..
T Consensus        28 ~~rIvgG~~a~~~~~Pw~v~l~~~~~--~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~-~~  104 (289)
T 2bdy_A           28 DGRIVEGSDAEIGMSPWQVMLFRKSP--QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYE-RN  104 (289)
T ss_dssp             ---CBSCEECCTTSCTTEEEEEETTT--TEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCC-TT
T ss_pred             CCeEECCEECCCCCCCCeEEEEECCC--CCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccccC-CC
Confidence            46999999999999999999976432  3789999999999999999999642211112456799999999875433 13


Q ss_pred             CceeeeeeEEEECCCCCC-CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC-
Q psy15989         97 GVQNKQVKRVHIYPTFNS-SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS-  174 (363)
Q Consensus        97 ~~~~~~V~~i~~hp~y~~-~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~-  174 (363)
                      ..+.+.|+++++||+|+. .++.||||||+|++|+.|+++|+|||||.......   .......|. .+|||.+..... 
T Consensus       105 ~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~---~~~~g~~~~-v~GWG~~~~~~~~  180 (289)
T 2bdy_A          105 IEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAAS---LLQAGYKGR-VTGWGNLKETWTA  180 (289)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHH---HCCTTCEEE-EEESSCSSCC---
T ss_pred             cceeeeeEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCcccccc---ccCCCCEEE-EECCCcCCCcccc
Confidence            356788999999999984 56789999999999999999999999986532000   000112344 678886432110 


Q ss_pred             ---eeEEeeeeEEEEeecCeeecccc--------ceEEec-----CCCccCcccccceeEEEE--cCccEEEEEEEEEEe
Q psy15989        175 ---AWYLRGIVSITVARDGLRVCDTK--------HYVVFT-----DVANVCNGDSGGGMVFKI--DSAWYLRGIVSITVA  236 (363)
Q Consensus       175 ---~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~~-----~~~~~C~gdsGgpl~~~~--~~~~~l~Gi~s~~~~  236 (363)
                         ......|+...+++++...|...        +.|+..     ...+.|.|||||||++..  +++|+|+||+||+  
T Consensus       181 ~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g--  258 (289)
T 2bdy_A          181 NVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWG--  258 (289)
T ss_dssp             ----CCCSBCEEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEEC--
T ss_pred             CccccccccceEEEEEEECHHHhhccccCcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEEC--
Confidence               00134577888999999999643        235432     246899999999999987  7899999999994  


Q ss_pred             cCcceecC-CCcceEEEeeeEE
Q psy15989        237 RDGLRVCD-TKHYVVFTDVKRV  257 (363)
Q Consensus       237 ~~g~~~c~-~~~~~v~~~V~~i  257 (363)
                         . .|. ...+.+|++|..+
T Consensus       259 ---~-~C~~~~~p~vyt~V~~y  276 (289)
T 2bdy_A          259 ---E-GCDRDGKYGFYTHVFRL  276 (289)
T ss_dssp             ---S-SSSCTTCCEEEEETGGG
T ss_pred             ---C-CCCCCCCCEEEEEHHHH
Confidence               3 354 4678999998753

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=8.3e-44  Score=311.60  Aligned_cols=216  Identities=30%  Similarity=0.402  Sum_probs=167.0

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+.... ...++||||||+++||||||||+....    .....+.|++|.+++.     ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-~~~~~CgGtLIs~~~VLTAAHC~~~~~----~~~~~~~v~~g~~~~~-----~~~~   70 (245)
T 2f9n_A            1 IVGGQEAPRSKWPWQVSLRVRDR-YWMHFCGGSLIHPQWVLTAAHCVGPDV----KDLATLRVQLREQHLY-----YQDQ   70 (245)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS-SEEEEEEEEEEETTEEEECGGGGCSSC----CCGGGEEEECSCSBTT-----TTCC
T ss_pred             CCCCeECCCCCCCcEEEEEEcCC-CcceEEEEEEeeCCEEEECHHhCCCCC----CCcceEEEEeCCcccc-----cCce
Confidence            79999999999999999987532 247899999999999999999996421    1346799999998765     3346


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....      ......|. .+|||.+..........
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~~~~~~  143 (245)
T 2f9n_A           71 LLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASET------FPPGMPCW-VTGWGDVDNDEPLPPPF  143 (245)
T ss_dssp             CBCEEEEEECTTCCSSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCC------CCTTCCEE-EEESCCSBTTBCCCTTC
T ss_pred             EEEEEEEEECCCccCCCCCCcEEEEEeCCCCcCCCCccccCCCCcccC------CCCCCEEE-EEEeCCCCCCCCCCccc
Confidence            789999999999999889999999999999999999999999976541      11223455 67888653322111112


Q ss_pred             eeeEEEEeecCeeecccc-----------------ceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCccee
Q psy15989        180 GIVSITVARDGLRVCDTK-----------------HYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRV  242 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~-----------------~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~  242 (363)
                      .|+...+++++...|...                 +.|......+.|.|||||||++..+++|+|+||+|++     ..+
T Consensus       144 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g-----~~C  218 (245)
T 2f9n_A          144 PLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWG-----EGC  218 (245)
T ss_dssp             BCEEEECCEECHHHHHHHHHTTCCSCTTSCCSCTTEEEECCSSSBCCTTCTTCEEEEEETTEEEEEEEEEEC-----SSS
T ss_pred             cceEEEEEEcCHHHhhhhhcccccccccccccccccEeecCCCCCcCCCCCCCceEEEECCEEEEEEEEEeC-----CCC
Confidence            467778888888888532                 2455555678999999999999999999999999994     333


Q ss_pred             cCCCcceEEEeeeEE
Q psy15989        243 CDTKHYVVFTDVKRV  257 (363)
Q Consensus       243 c~~~~~~v~~~V~~i  257 (363)
                      +....+.+|++|..+
T Consensus       219 ~~~~~p~vyt~V~~y  233 (245)
T 2f9n_A          219 AQPNRPGIYTRVTYY  233 (245)
T ss_dssp             SBTTBCEEEEEGGGG
T ss_pred             CCCCCCeEEEEHHHH
Confidence            344678999998753

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=3.4e-43  Score=306.83  Aligned_cols=214  Identities=28%  Similarity=0.427  Sum_probs=166.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+........++||||||+++||||||||+..        ...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~--------~~~~~V~~G~~~~~~~~--~~~~   70 (241)
T 1bru_P            1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS--------SRTYRVVLGRHSLSTNE--PGSL   70 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT--------TSCEEEEESCSBSSSCC--TTCE
T ss_pred             CCCCeECCCCCcCcEEEEEEecCCceeeEEEeEEeeCCEEEEcHHhccc--------CCceEEEEEcccccCCC--CccE
Confidence            7999999999999999998754333468999999999999999999962        25689999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCC--CCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~--nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.|+++++||+|+..+..  ||||||||++|+.|+++|+|||||.....      ......|. .+|||.....+  ..
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~--~~  141 (241)
T 1bru_P           71 AVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTI------LPNNYVCY-VTGWGRLQTNG--AS  141 (241)
T ss_dssp             EEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCC------CCTTCEEE-EEESCCSSTTS--CC
T ss_pred             EEEEEEEEECCCCCCCCCCCCCcEEEEEeCCCcccCCccCCcccCCCcCC------CCCCCEEE-EEEccccCCCC--CC
Confidence            8999999999999988777  99999999999999999999999976541      11123455 67887653211  12


Q ss_pred             EeeeeEEEEeecCeeecccc----------ceEEec-CCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecC-
Q psy15989        178 LRGIVSITVARDGLRVCDTK----------HYVVFT-DVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCD-  244 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~----------~~~~~~-~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~-  244 (363)
                      ...|+...+++++...|...          +.|... ...+.|.|||||||++.. +++|+|+||+|++.    ...|. 
T Consensus       142 ~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~----~~~C~~  217 (241)
T 1bru_P          142 PDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGS----SLGCNY  217 (241)
T ss_dssp             CSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEECCSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECB----TTBSSC
T ss_pred             CccceeCEEEEecHHHhCcccccCCcCCCceEeecCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcC----CCCCCC
Confidence            34567788888888889753          234442 346899999999999987 78999999999942    11465 


Q ss_pred             CCcceEEEeeeE
Q psy15989        245 TKHYVVFTDVKR  256 (363)
Q Consensus       245 ~~~~~v~~~V~~  256 (363)
                      ...+.+|++|..
T Consensus       218 ~~~p~vyt~V~~  229 (241)
T 1bru_P          218 YHKPSVFTRVSN  229 (241)
T ss_dssp             TTCCEEEEEGGG
T ss_pred             CCCCcEEEEHHH
Confidence            367899999875

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=2.2e-43  Score=315.36  Aligned_cols=226  Identities=24%  Similarity=0.418  Sum_probs=172.3

Q ss_pred             CCCCccccCC--ccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEE
Q psy15989          6 VSCGTVVYNK--AQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIY   83 (363)
Q Consensus         6 ~~CG~~~~~~--~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~   83 (363)
                      ..||.+....  ...||+||.+|.+++|||||+|+..     .++||||||+++||||||||+....     ....+.|+
T Consensus        20 ~~CG~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~-----~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~~~~V~   89 (283)
T 1yc0_A           20 QACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG-----DSFCAGSLVHTCWVVSAAHCFSHSP-----PRDSVSVV   89 (283)
T ss_dssp             -CCSCCSCC-------CBSCEECCTTSSTTEEEEEET-----TEEEEEEEEETTEEEECGGGGTTCC-----CGGGEEEE
T ss_pred             CCcCCcccccccCcCceECCeECCCCCCCeEEEEEcC-----CcEEEEEEeeCCEEEECHHHcCCCC-----CCceEEEE
Confidence            4699873221  2369999999999999999999753     5789999999999999999997531     24679999


Q ss_pred             eceecccccCCCCCceeeeeeEEEECCCCCC-CCCCCCeEEEEeCCc----ccCCCCccceEecCCCCCCceeeeeecee
Q psy15989         84 LGKYHQHQFSDEGGVQNKQVKRVHIYPTFNS-SNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGTS  158 (363)
Q Consensus        84 ~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~-~~~~nDIALl~L~~~----~~~~~~v~picL~~~~~~~~~~~~~~~~~  158 (363)
                      +|.+++....  ...+.+.|+++++||+|+. .+..||||||+|++|    +.|+++|+|||||.....      .....
T Consensus        90 ~G~~~~~~~~--~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~------~~~g~  161 (283)
T 1yc0_A           90 LGQHFFNRTT--DVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGST------FPAGH  161 (283)
T ss_dssp             ESCCBTTCCC--SSCEEECEEEEEECTTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCC------CCTTC
T ss_pred             EeeeecccCC--CceEEEeeEEEEecCccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCC------CCCCC
Confidence            9999876543  4568899999999999988 778999999999999    899999999999975431      11223


Q ss_pred             eecCCCCccceEEecCeeEEeeeeEEEEeecCeeecccc----------ceEEec--CCCccCcccccceeEEEEcCccE
Q psy15989        159 VCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----------HYVVFT--DVANVCNGDSGGGMVFKIDSAWY  226 (363)
Q Consensus       159 ~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~  226 (363)
                      .|. .+|||....... .....|+...+++++...|...          +.|...  ...+.|.|||||||++..+++|+
T Consensus       162 ~~~-v~GwG~~~~~~~-~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g~~~  239 (283)
T 1yc0_A          162 KCQ-IAGWGHLDENVS-GYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAY  239 (283)
T ss_dssp             EEE-EEESSCSBTTBC-SCCSBCEEEEEEBCCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEE
T ss_pred             EEE-EEEeCccCCCCC-ccCchheEeEEEEECHHHhcCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEECCcEE
Confidence            455 688886543211 1234577888899999999742          234432  24689999999999999899999


Q ss_pred             EEEEEEEEEecCcceecC-CCcceEEEeeeEE
Q psy15989        227 LRGIVSITVARDGLRVCD-TKHYVVFTDVKRV  257 (363)
Q Consensus       227 l~Gi~s~~~~~~g~~~c~-~~~~~v~~~V~~i  257 (363)
                      |+||+|++     . .|. ...+.+|++|..+
T Consensus       240 l~GIvS~g-----~-~C~~~~~p~vyt~V~~y  265 (283)
T 1yc0_A          240 LYGIISWG-----D-GCGRLHKPGVYTRVANY  265 (283)
T ss_dssp             EEEEEEEC-----S-TTTCTTCCEEEEEGGGG
T ss_pred             EEEEEEEC-----C-CCCCCCCCeEEEEhhhH
Confidence            99999994     3 354 4678999998763

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=1.5e-43  Score=308.64  Aligned_cols=215  Identities=26%  Similarity=0.403  Sum_probs=167.1

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+.... ...++||||||+++||||||||+....     .+..+.|++|.++.....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-~~~~~CgGtLI~~~~VLTAAHC~~~~~-----~~~~~~v~~G~~~~~~~~--~~~~   72 (238)
T 3bg8_A            1 IVGGTASVRGEWPWQVTLHTTSP-TQRHLCGGSIIGNQWILTAAHCFYGVE-----SPKILRVYSGILNQSEIK--EDTS   72 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEECSS-SCEEEEEEEEEETTEEEECGGGGTTCC-----CGGGEEEECSCSBGGGCC--TTSC
T ss_pred             CCCCeECCCCCcCcEEEEEeecC-CCcEEEEEEEeeCCEEEECHHHCCCCC-----CCceEEEEEeeccCCcCC--CCce
Confidence            78999999999999999986532 237899999999999999999997532     346789999998876543  4567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.++|||||.....      ......|. .+|||.....+.  ...
T Consensus        73 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~  143 (238)
T 3bg8_A           73 FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGER------NVIYTDCW-VTGWGYRKLRDK--IQN  143 (238)
T ss_dssp             CEEEEEEEECTTCCCGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGGG------SSCCCCEE-EEESCCSSSSCC--CCS
T ss_pred             EEeeEEEEECCCCCCCCCCCcEEEEEECCccccCCCcccCCCCCCccC------cCCCCeEE-EEecCCCCCCCC--hhh
Confidence            889999999999998888999999999999999999999999875431      01122444 677875432221  234


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .|+...+++++...|...         +.|...  ...+.|.|||||||++..+++|+|+||+|++     ..++....+
T Consensus       144 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g-----~~C~~~~~p  218 (238)
T 3bg8_A          144 TLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWG-----EGCAQRERP  218 (238)
T ss_dssp             BCEEEECCEECHHHHHHHCTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEC-----SSSSCTTCC
T ss_pred             hhcEeeEEEECHHHhhhhhcCCCCCCCeEeecCCCCCCCcCCCCCCcceEEEECCeEEEEEEEEEC-----CCCCCCCCC
Confidence            567778888888889632         234432  3568999999999999999999999999994     333344678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       219 ~vyt~V~~  226 (238)
T 3bg8_A          219 GVYTNVVE  226 (238)
T ss_dssp             EEEEEGGG
T ss_pred             cEEEeHHH
Confidence            99999875

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=4.1e-43  Score=306.40  Aligned_cols=215  Identities=26%  Similarity=0.430  Sum_probs=167.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+.... ...++||||||+++||||||||+....     ....+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-~~~~~CgGtLI~~~~VLTAAHC~~~~~-----~~~~~~v~~G~~~~~~~~--~~~~   72 (241)
T 2any_A            1 IVGGTESSWGEWPWQVSLQVKLT-AQRHLCGGSLIGHQWVLTAAHCFDGLP-----LQDVWRIYSGILELSDIT--KDTP   72 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESS-SEEEEEEEEEEETTEEEECGGGGSSCC-----CSTTEEEECSCSBGGGCC--TTSC
T ss_pred             CCCCEECCCCCCCcEEEEEEEcC-CCceEEEEEEecCCEEEECHHHcCCCC-----CCccEEEEeeeeeccccc--cCce
Confidence            78999999999999999987532 347899999999999999999997532     235789999998876543  4557


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|+++++|||||.....      ......|. .+|||.....+.  ...
T Consensus        73 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~  143 (241)
T 2any_A           73 FSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDT------STIYTNCW-VTGWGFSKEKGE--IQN  143 (241)
T ss_dssp             CBCEEEEEECTTCCTTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSCC------STTCSEEE-EEESSCSSTTCC--CCS
T ss_pred             EEeeEEEEECCCCCCCCCCCCeEEEEeCCcccCCCCcceeEcCCcccC------CCCCCeEE-EEecccCCCCCC--cCc
Confidence            789999999999999889999999999999999999999999976541      11123454 678876432211  234


Q ss_pred             eeeEEEEeecCeeeccccc---------eEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTKH---------YVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~---------~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .|+...+++++...|...+         .|...  ...+.|.|||||||++..+++|+|+||+|++     ..++....+
T Consensus       144 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g-----~~c~~~~~p  218 (241)
T 2any_A          144 ILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWG-----EGCARREQP  218 (241)
T ss_dssp             BCEEEEEEEECHHHHHTTSCTTCSCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEC-----SSSSCTTCC
T ss_pred             hhheeEeEEeCHHHhhhHhccCCCCcCcEeecCCCCCCccCCCCCCCcEEEEECCEEEEEEEEEec-----CCCCCCCCC
Confidence            4677788888888996432         34432  3468999999999999999999999999994     333345678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       219 ~vyt~V~~  226 (241)
T 2any_A          219 GVYTKVAE  226 (241)
T ss_dssp             EEEEEGGG
T ss_pred             eEEEEHHH
Confidence            99999875

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=6.7e-43  Score=304.84  Aligned_cols=214  Identities=27%  Similarity=0.445  Sum_probs=166.9

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...+....++||||||+++||||||||+..        ...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~--------~~~~~v~~G~~~~~~~~--~~~~   70 (240)
T 1gvk_B            1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR--------ELTFRVVVGEHNLNQNN--GTEQ   70 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCS--------CCCEEEEESCSBTTSCC--SCCE
T ss_pred             CCCCeECCCCCcCEEEEEEecCCCccCceEEEEEeeCCEEEECHHHCCC--------CcceEEEECCeecccCC--Ccce
Confidence            7899999999999999998644332368999999999999999999964        25689999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCC--CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~--~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.|+++++||+|+..+.  .||||||+|++|+.|+++|+|||||.....      ......|. .+|||.....+  ..
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~------~~~~~~~~-v~GwG~~~~~~--~~  141 (240)
T 1gvk_B           71 YVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTI------LANNSPCY-ITGWGLTRTNG--QL  141 (240)
T ss_dssp             EEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCC------CCTTCCEE-EEESCBSSTTC--CB
T ss_pred             EEEEEEEEECCCCCCCCCCCCCcEEEEEECCccccCCCccceecCCCCCC------CCCCCEEE-EEecCcCCCCC--Cc
Confidence            899999999999998877  899999999999999999999999976541      11123454 67888653211  12


Q ss_pred             EeeeeEEEEeecCeeecccc----------ceEEe-cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-C
Q psy15989        178 LRGIVSITVARDGLRVCDTK----------HYVVF-TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-T  245 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~----------~~~~~-~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~  245 (363)
                      ...|+...+++++...|...          +.|.. ....+.|.|||||||++..+++|+|+||+|++.    ...|. .
T Consensus       142 ~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~----~~~C~~~  217 (240)
T 1gvk_B          142 AQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVS----RLGCNVT  217 (240)
T ss_dssp             CSBCEEEECCEECHHHHTSTTTTGGGCCTTEEEECCSSSCBCCTTCTTCEEEEEETTEEEEEEEEEECB----TTBSSCT
T ss_pred             chhccEEEEEEEcHHHhccccccCccCCcceEeecCCCCCcccCCCCcCceEEEECCcEEEEEEEEEeC----CCCCCCC
Confidence            34567778888888889642          23444 234689999999999999889999999999941    12465 4


Q ss_pred             CcceEEEeeeE
Q psy15989        246 KHYVVFTDVKR  256 (363)
Q Consensus       246 ~~~~v~~~V~~  256 (363)
                      ..+.+|++|..
T Consensus       218 ~~p~vyt~V~~  228 (240)
T 1gvk_B          218 RKPTVFTRVSA  228 (240)
T ss_dssp             TCCEEEEEGGG
T ss_pred             CCCcEEEeHHH
Confidence            67899999875

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=2.9e-43  Score=311.25  Aligned_cols=215  Identities=29%  Similarity=0.482  Sum_probs=168.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+....     ....+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLI~~~~VLTAAhC~~~~~-----~~~~~~v~~g~~~~~~~~--~~~~   69 (261)
T 3gyl_B            1 ITGGSSAVAGQWPWQVSITYEG----VHVCGGSLVSEQWVLSAAHCFPSEH-----HKEAYEVKLGAHQLDSYS--EDAK   69 (261)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEECSSSEEEECGGGSCTTS-----CGGGEEEEESCSBTTSCC--SSCE
T ss_pred             CCCCcCCCCCCCCcEEEEeeCC----ceEEEEEEEcCCEEEECHHHCCCCC-----CcccEEEEeCceeccCCC--CCce
Confidence            7899999999999999998654    7899999999999999999996432     346799999999887554  5567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|+++|+|||||.....      ......|. .+|||............
T Consensus        70 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~~~~~~  142 (261)
T 3gyl_B           70 VSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQAS------FPNGLHCT-VTGWGHVAPSVSLLTPK  142 (261)
T ss_dssp             EECEEEEEECTTCCSTTCSCCCEEEEESSCCCCBTTBCCCBCCCTTCC------CCTTCEEE-EEESSCSBTTBCCCTTC
T ss_pred             EEEEEEEEECCCcCCCCCCCcEEEEEECCCccCCCceeccCCCCcccC------CCCCCEEE-EEecCCCCCCCCccCCc
Confidence            899999999999999999999999999999999999999999876541      11223455 67888653322111134


Q ss_pred             eeeEEEEeecCeeecccc----------------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcce
Q psy15989        180 GIVSITVARDGLRVCDTK----------------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLR  241 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~----------------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~  241 (363)
                      .++...+.+++...|...                +.|..  ....+.|.|||||||++..+++|+|+||+|++     ..
T Consensus       143 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~lvGI~S~g-----~~  217 (261)
T 3gyl_B          143 PLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWG-----DA  217 (261)
T ss_dssp             BCEEEEEEEECHHHHHHHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEECCC-----CC
T ss_pred             cceEEEEEEECHHHhhhhhcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEeCCEEEEEEEEecC-----CC
Confidence            467778888888888632                23443  34578999999999999999999999999994     33


Q ss_pred             ecCCCcceEEEeeeEE
Q psy15989        242 VCDTKHYVVFTDVKRV  257 (363)
Q Consensus       242 ~c~~~~~~v~~~V~~i  257 (363)
                      ++....+.+|++|..+
T Consensus       218 c~~~~~p~vyt~v~~~  233 (261)
T 3gyl_B          218 CGARNRPGVYTLASSY  233 (261)
T ss_dssp             SSCTTCCEEEEEGGGG
T ss_pred             CCCCCCCCEEEEHHHh
Confidence            3334678999998753

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=8.9e-43  Score=311.97  Aligned_cols=221  Identities=24%  Similarity=0.400  Sum_probs=167.4

Q ss_pred             eecCeecCCCCCcceEEEEEee--CCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCC---
Q psy15989         20 VTYGQKTARGQWPWHVALYRTE--GINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSD---   94 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~--~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~---   94 (363)
                      |+||.+|.+++|||||+|+...  .....|+||||||+++||||||||+....     ....+.|++|.+++.....   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~~~~v~~G~~~~~~~~~~~~   75 (290)
T 1fiw_A            1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKK-----KVTDWRLIFGAKEVEWGTNKPV   75 (290)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTTTEEEEEEEEEEEETTEEEECGGGGSSCC-----SGGGEEEEESCSBCCTTCCSCC
T ss_pred             CCCCEECCCCCCCcEEEEEEeccCCCccceEEEEEEeeCCEEEECHHhCCCCC-----CCcceEEEecceEEeccCCCcC
Confidence            7999999999999999997642  12246899999999999999999997532     2457899999987653221   


Q ss_pred             CCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC
Q psy15989         95 EGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS  174 (363)
Q Consensus        95 ~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~  174 (363)
                      ....+.+.|+++++||+|+..+..||||||||++|+.|+++|+|||||......     ......|. .+|||.+...+.
T Consensus        76 ~~~~~~~~V~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~-----~~~~~~~~-v~GWG~~~~~~~  149 (290)
T 1fiw_A           76 KPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGP-----PRVPQTCW-VAGWGFLQENAR  149 (290)
T ss_dssp             CTTCEEEEEEEEEECTTCBTTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCS-----CCSSCEEE-EEESCCSSTTCS
T ss_pred             CCCceEEEEEEEEECCCCCCCCCCCCEEEEEECCccccCCccccccCCCccccC-----cCCCCeEE-EEEeccCCCCCC
Confidence            134578899999999999998999999999999999999999999999754311     11123455 678886532211


Q ss_pred             eeEEeeeeEEEEeecCeeecccc----------ceEEec--CCCccCcccccceeEEEE--cCccEEEEEEEEEEecCcc
Q psy15989        175 AWYLRGIVSITVARDGLRVCDTK----------HYVVFT--DVANVCNGDSGGGMVFKI--DSAWYLRGIVSITVARDGL  240 (363)
Q Consensus       175 ~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~~--~~~~~C~gdsGgpl~~~~--~~~~~l~Gi~s~~~~~~g~  240 (363)
                       .....|+...+++++...|...          +.|+..  ...+.|.|||||||++..  +++|+|+||+|++     .
T Consensus       150 -~~~~~L~~~~v~i~~~~~C~~~~~~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g-----~  223 (290)
T 1fiw_A          150 -RTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWG-----V  223 (290)
T ss_dssp             -SCCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEEC-----S
T ss_pred             -CCCceeeEEEEEEecHHHhccccccCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEEC-----C
Confidence             1123477888888999999742          235542  246899999999999986  6889999999994     3


Q ss_pred             eecCCCcceEEEeeeEE
Q psy15989        241 RVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       241 ~~c~~~~~~v~~~V~~i  257 (363)
                      .++....+.+|++|..+
T Consensus       224 ~C~~~~~p~vyt~V~~y  240 (290)
T 1fiw_A          224 GCARAKRPGVYTSTWSY  240 (290)
T ss_dssp             SSSBTTBCEEEEESGGG
T ss_pred             CCCCCCCCeEEEEHHHh
Confidence            33345678999998763

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=1e-42  Score=306.09  Aligned_cols=216  Identities=28%  Similarity=0.429  Sum_probs=167.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeC--CceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCC
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEG--INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGG   97 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~--~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~   97 (363)
                      |+||.+|.+++|||||+|+....  ....++||||||+++||||||||+....     .+..+.|++|.++.....  ..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~-----~~~~~~V~~G~~~~~~~~--~~   73 (252)
T 1rtf_B            1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERF-----PPHHLTVILGRTYRVVPG--EE   73 (252)
T ss_dssp             CBSSEECCGGGSTTEEEEEEEC----CEEEEEEEEECSSSEEEECGGGGTTCC-----CGGGEEEEESCSBSSSCC--TT
T ss_pred             CCCCeECCCCCcCCEEEEEEecCCCCCCCEEEEEEEEeCCEEEECHHHCCCCC-----CcccEEEEeCcccccCCC--Cc
Confidence            78999999999999999986431  2347899999999999999999997531     346799999998775433  45


Q ss_pred             ceeeeeeEEEECCCCCCCCCCCCeEEEEeCCc----ccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEec
Q psy15989         98 VQNKQVKRVHIYPTFNSSNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKID  173 (363)
Q Consensus        98 ~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~----~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~  173 (363)
                      .+.+.|+++++||+|+..+..||||||+|++|    +.|++.|+|||||.....      ......|. .+|||......
T Consensus        74 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~  146 (252)
T 1rtf_B           74 EQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQ------LPDWTECE-LSGYGKHEALS  146 (252)
T ss_dssp             CEEEEEEEEEECTTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCC------CCTTCEEE-EEESCCSSTTC
T ss_pred             ceEEEEEEEEeCCCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCcccc------CCCCCEEE-EEEcCCCCCCC
Confidence            68899999999999999999999999999999    899999999999976541      11223455 67887543211


Q ss_pred             CeeEEeeeeEEEEeecCeeeccccc----------eEEecCC--------CccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        174 SAWYLRGIVSITVARDGLRVCDTKH----------YVVFTDV--------ANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       174 ~~~~~~~l~~~~~~~~~~~~C~~~~----------~~~~~~~--------~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                       ......|+...+++++...|...+          .|.....        .+.|.|||||||++..+++|+|+||+|++ 
T Consensus       147 -~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~~~~~l~Gi~S~g-  224 (252)
T 1rtf_B          147 -PFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWG-  224 (252)
T ss_dssp             -SSCCSBCEEEEEEECCGGGSSTTTTTTCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEETTEEEEEEEEEEC-
T ss_pred             -ccccchheEeeeEEecHHHhhhhhccCCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEeCCcEEEEEEEEEc-
Confidence             112345677888899999997432          3443322        67999999999999989999999999994 


Q ss_pred             ecCcceecC-CCcceEEEeeeE
Q psy15989        236 ARDGLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       236 ~~~g~~~c~-~~~~~v~~~V~~  256 (363)
                          . .|. ...+.+|++|..
T Consensus       225 ----~-~C~~~~~p~vyt~V~~  241 (252)
T 1rtf_B          225 ----L-GCGQKDVPGVYTKVTN  241 (252)
T ss_dssp             ----S-SSSCTTCCEEEEEGGG
T ss_pred             ----C-CCCCCCCCeEEEEHHH
Confidence                3 354 456899999865

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=4.9e-43  Score=324.03  Aligned_cols=222  Identities=28%  Similarity=0.456  Sum_probs=169.5

Q ss_pred             CCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEece
Q psy15989          7 SCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGK   86 (363)
Q Consensus         7 ~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~   86 (363)
                      +||++  .....||+||.+|.+++|||||+|+...    .++||||||+++||||||||+....    ..+..+.|++|.
T Consensus       107 ~Cg~~--~~~~~rIvgG~~a~~~~~Pw~v~l~~~~----~~~CgGsLIs~~~VLTAAHCv~~~~----~~~~~~~V~~G~  176 (372)
T 1z8g_A          107 DCGRR--KLPVDRIVGGRDTSLGRWPWQVSLRYDG----AHLCGGSLLSGDWVLTAAHCFPERN----RVLSRWRVFAGA  176 (372)
T ss_dssp             CCSCC--CCC---CBSCEECCTTSSTTEEEEEETT----EEEEEEEESSSSEEEECGGGCCGGG----CCGGGEEEEESC
T ss_pred             ccCCc--CCCCCceECCEECCCCCCCcEEEEEeCC----ceEEEEEEecCCEEEEChhhcCCCC----CccceEEEEEee
Confidence            68976  2456799999999999999999998643    7999999999999999999995321    134679999999


Q ss_pred             ecccccCCCCCceeeeeeEEEECCCC------CCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeee
Q psy15989         87 YHQHQFSDEGGVQNKQVKRVHIYPTF------NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVC  160 (363)
Q Consensus        87 ~~~~~~~~~~~~~~~~V~~i~~hp~y------~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c  160 (363)
                      +++..    ...+.+.|++|++||+|      +..+..||||||||++|+.|+++|+|||||.... .     ......|
T Consensus       177 ~~~~~----~~~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~-~-----~~~g~~~  246 (372)
T 1z8g_A          177 VAQAS----PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQ-A-----LVDGKIC  246 (372)
T ss_dssp             SBTTC----TTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTC-C-----CCTTCEE
T ss_pred             EeccC----CCCcEEEEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCccc-C-----CCCCCEE
Confidence            87643    33467899999999999      7778899999999999999999999999997654 1     1122355


Q ss_pred             cCCCCccceEEecCeeEEeeeeEEEEeecCeeecccc----------ceEEec--CCCccCcccccceeEEEEc----Cc
Q psy15989        161 NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----------HYVVFT--DVANVCNGDSGGGMVFKID----SA  224 (363)
Q Consensus       161 ~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~~--~~~~~C~gdsGgpl~~~~~----~~  224 (363)
                      . .+|||.+...+.  ....|+...+++++...|...          +.|+..  ...+.|.|||||||++...    ++
T Consensus       247 ~-v~GWG~t~~~~~--~~~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~  323 (372)
T 1z8g_A          247 T-VTGWGNTQYYGQ--QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPR  323 (372)
T ss_dssp             E-EEESSBSSTTSC--BCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCE
T ss_pred             E-EEecCCCCCCCC--CCceeeEEEEEecChHHhCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCC
Confidence            5 688886532221  234577888888999999742          234432  2468999999999999875    88


Q ss_pred             cEEEEEEEEEEecCcceecC-CCcceEEEeeeEE
Q psy15989        225 WYLRGIVSITVARDGLRVCD-TKHYVVFTDVKRV  257 (363)
Q Consensus       225 ~~l~Gi~s~~~~~~g~~~c~-~~~~~v~~~V~~i  257 (363)
                      |+|+||+|++     . .|. ...+.+|++|..+
T Consensus       324 ~~lvGIvS~G-----~-~C~~~~~p~vyt~V~~y  351 (372)
T 1z8g_A          324 WRLCGIVSWG-----T-GCALAQKPGVYTKVSDF  351 (372)
T ss_dssp             EEEEEEEEEB-----S-SSSCTTCCEEEEEGGGG
T ss_pred             EEEEEEEEeC-----C-CCCCCCCCeEEEEHHHH
Confidence            9999999994     3 354 4678999998763

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=1.1e-42  Score=303.80  Aligned_cols=219  Identities=28%  Similarity=0.393  Sum_probs=169.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+....   .++||||||+++||||||||+.+........+..+.|++|.++..... ....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~-~~~~~   76 (241)
T 3ncl_A            1 VVGGTDADEGEWPWQVSLHALGQ---GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRS-APGVQ   76 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTT---EEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTT-STTCE
T ss_pred             CCCCeECCCCCCCcEEEEEcCCC---ceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCC-CCCce
Confidence            78999999999999999986532   689999999999999999999764332223467899999998876542 24568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....      ......|. .+|||.......  ...
T Consensus        77 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~  147 (241)
T 3ncl_A           77 ERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHV------FPAGKAIW-VTGWGHTQYGGT--GAL  147 (241)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCC------CCTTCEEE-EEESSBSSTTSC--BCS
T ss_pred             EEEEEEEEECCCCCCCCCCCcEEEEEECCCCcccCccCceEcCCcccC------CCCCCEEE-EEEecccCCCCC--cCc
Confidence            899999999999999999999999999999999999999999976541      11223455 678876532211  233


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEe--cCCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVF--TDVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~--~~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .++...+.+++...|...        +.|..  ....+.|.|||||||++.. +++|+|+||+|++     ..++....+
T Consensus       148 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g-----~~c~~~~~p  222 (241)
T 3ncl_A          148 ILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWG-----DGCAQRNKP  222 (241)
T ss_dssp             BCEEEEEEECCHHHHHHHSTTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEEC-----SSSSCTTCC
T ss_pred             eeeEEeEEEECHHHhhhhcccCCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEEC-----CCCCCCCCC
Confidence            467788888899999642        23443  3356899999999999765 7889999999994     334445678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       223 ~vyt~v~~  230 (241)
T 3ncl_A          223 GVYTRLPL  230 (241)
T ss_dssp             EEEEESGG
T ss_pred             eEEEEHHH
Confidence            99999865

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=1.5e-42  Score=302.04  Aligned_cols=215  Identities=25%  Similarity=0.324  Sum_probs=165.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+.....+..++||||||+++||||||||+.....   .++..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~---~~~~~~~v~~G~~~~~~~~--~~~~   75 (237)
T 2f91_A            1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDY---ENPSGLQIVAGELDMSVNE--GSEQ   75 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCT---TSCCSEEEEESCSBTTSCC--SCCE
T ss_pred             CCCccCCCCCCCCcEEEEEEecCCCCcceEEEEEeeCCEEEEcHHhCCCCcc---CCcccEEEEECCeeccCCC--CccE
Confidence            7899999999999999998653222124499999999999999999975321   1356799999999876433  4458


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....       .+ ..|. .+|||.....+.  ...
T Consensus        76 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-------~~-~~~~-v~GwG~~~~~~~--~~~  144 (237)
T 2f91_A           76 IITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHT-------AT-GDVI-VTGWGTTSEGGN--TPD  144 (237)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCC-------CC-SEEE-EEESCCSSTTCC--CCS
T ss_pred             EEEEEEEEECCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCCCCC-------CC-CcEE-EEECCcCCCCCC--ccc
Confidence            899999999999999889999999999999999999999999976541       12 2344 577876532211  234


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCc
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKH  247 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~  247 (363)
                      .|+...+++++...|...         +.|...  ...+.|.|||||||++..+++|+|+||+|++     . .|. ...
T Consensus       145 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g-----~-~C~~~~~  218 (237)
T 2f91_A          145 VLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWG-----Y-GCARPGY  218 (237)
T ss_dssp             BCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEE-----S-SSSCTTC
T ss_pred             eeeEEEEeEcCHHHhhhhhCCCCcCCCeEEEecCCCCCCCCCCcCCCCeEEecCCCEEEEEEEEec-----C-CCCCCCC
Confidence            467778888888888632         234432  3568999999999999988999999999995     2 354 467


Q ss_pred             ceEEEeeeE
Q psy15989        248 YVVFTDVKR  256 (363)
Q Consensus       248 ~~v~~~V~~  256 (363)
                      +.+|++|..
T Consensus       219 p~vyt~V~~  227 (237)
T 2f91_A          219 PGVYTEVSY  227 (237)
T ss_dssp             CEEEEEGGG
T ss_pred             CcEEEEHHH
Confidence            899999875

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=8.2e-43  Score=303.48  Aligned_cols=214  Identities=24%  Similarity=0.484  Sum_probs=167.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+....    ..+..+.|++|.+...... ....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLI~~~~VLTAAHC~~~~~----~~~~~~~v~~g~~~~~~~~-~~~~~   71 (235)
T 4dgj_A            1 IVGGSDAKEGAWPWVVGLYYDD----RLLCGASLVSSDWLVSAAHCVYGRN----LEPSKWTAILGLHMKSNLT-SPQTV   71 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEECSSSEEEECHHHHTTSC----SSGGGEEEEESCCBTTCCS-CTTCE
T ss_pred             CCCCccCCCCCCCcEEEEeeCC----CeEEEEEEeeCCEEEECHHhcCCCC----CCCccEEEEEeeecccccC-CCcee
Confidence            7899999999999999998753    7899999999999999999996532    2456799999998765433 24557


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|+++|+|||||.....      ......|. .+|||.....+.  ...
T Consensus        72 ~~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~  142 (235)
T 4dgj_A           72 PRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQV------FPPGRNCS-IAGWGTVVYQGT--TAD  142 (235)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCC------CCTTCEEE-EEESSBSSTTCC--BCS
T ss_pred             EEeEEEEEECCCCCCCCCCCeEEEEEECCccccCCcccccCCCCcccC------CCCCCEEE-EEecccCCCCCc--cch
Confidence            788999999999999999999999999999999999999999976641      11223455 678875432211  234


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .|+...+++.+...|...         +.|..  ....+.|.|||||||++..+++|+|+||+|++     ..++....+
T Consensus       143 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~Gi~S~g-----~~c~~~~~p  217 (235)
T 4dgj_A          143 ILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFG-----YECALPNRP  217 (235)
T ss_dssp             BCEEEEEEEECHHHHHHHCTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEC-----SSSSCTTCC
T ss_pred             hheEeEeeecCHHHhhhhccCccCCCCeEeecCCCCCCccCCCCCCCeEEEEECCcEEEEEEEEEc-----CCCCCCCCC
Confidence            577788888888899642         23443  23458999999999999999999999999994     334445678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       218 ~vyt~V~~  225 (235)
T 4dgj_A          218 GVYARVSR  225 (235)
T ss_dssp             EEEEEGGG
T ss_pred             EEEeeHHH
Confidence            99999865

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=2.9e-44  Score=327.98  Aligned_cols=218  Identities=20%  Similarity=0.345  Sum_probs=159.8

Q ss_pred             CCCccccC-CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEec
Q psy15989          7 SCGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG   85 (363)
Q Consensus         7 ~CG~~~~~-~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G   85 (363)
                      .||++..+ ....||+||++|.+++|||||+|+...    .++||||||+++||||||||+....      .....+..+
T Consensus        89 ~CG~p~~~~~~~~RIvGG~~a~~g~~Pw~v~l~~~~----~~~CGGsLIs~~~VLTAAHCv~~~~------~~~~~~~~~  158 (347)
T 4f4o_C           89 VCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHH----NLTSGATLINEQWLLTTAKNLRLGH------KNDTKAKDI  158 (347)
T ss_dssp             CCSCCSSCC-----CCSCCBCCSCCCTTCEEEECTT----CCEEECCBCSSSEEEECHHHHTTTS------CTTCCHHHH
T ss_pred             CCCCCCCCCCCCCeEECCEECCCCCCCcEEEEEeCC----CEEEEEEEEcCCEEEeCcccccCCC------CCcceEEee
Confidence            69987433 345799999999999999999998644    7899999999999999999996432      122333333


Q ss_pred             eecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCC
Q psy15989         86 KYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSG  165 (363)
Q Consensus        86 ~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G  165 (363)
                      ...+....  ...+.+.|+++++||+|+    .||||||||++|++|+++|+|||||..+..       .....|. .+|
T Consensus       159 ~~~~~~~~--~~~~~~~V~~i~~HP~y~----~nDIALlkL~~~v~~~~~v~PicLp~~~~~-------~~g~~~~-v~G  224 (347)
T 4f4o_C          159 APTLRLYV--GKKQEVEIEKVIFHPDNS----TVDIGLIKLKQKVPVNERVMPICLPSKDYV-------NVGLVGY-VSG  224 (347)
T ss_dssp             GGGCEEEE--TTTEEECEEEEEECSCTT----TCCCEEEEESSCCCCSSSCCCCBCCSSCCC-------CTTCEEE-EEE
T ss_pred             eeeeeecC--CCeEEEEEEEEEECcCCC----CCCEEEEEECCCccCCCceeeeecCccccC-------CCCcEEE-Eec
Confidence            33332222  456889999999999996    489999999999999999999999976651       1223454 678


Q ss_pred             ccceEEecCeeEEeeeeEEEEeecCeeecccc-------------------------ceEEe--cCCCccCcccccceeE
Q psy15989        166 GGMVFKIDSAWYLRGIVSITVARDGLRVCDTK-------------------------HYVVF--TDVANVCNGDSGGGMV  218 (363)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-------------------------~~~~~--~~~~~~C~gdsGgpl~  218 (363)
                      |+.....   .....|+...+++++.+.|...                         +.|+.  ...++.|+|||||||+
T Consensus       225 WG~~~~~---~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv  301 (347)
T 4f4o_C          225 WGRNANL---NFTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFA  301 (347)
T ss_dssp             CSBCTTS---SBCSSCEEEEEEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEE
T ss_pred             cccCCCC---CCCccceEEEEEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceE
Confidence            8754221   1234577888999998888532                         22332  2346899999999999


Q ss_pred             EEE--cCccEEEEEEEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        219 FKI--DSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       219 ~~~--~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      +..  +++|+|+||+||+.      .|....+.+|++|..+
T Consensus       302 ~~~~~~~~~~lvGIvS~G~------~C~~~~pgVYTrVs~y  336 (347)
T 4f4o_C          302 VHDKDDDTWYAAGILSFDK------SCRTAEYGVYVRVTSI  336 (347)
T ss_dssp             EEETTTTEEEEEEEEEECC------CTTTSSCEEEEEHHHH
T ss_pred             EEeCCCCEEEEEEEEEeCC------CCCCCCCeEEEEHHHH
Confidence            865  67899999999942      4877778999998754

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=1.4e-42  Score=302.15  Aligned_cols=214  Identities=27%  Similarity=0.424  Sum_probs=167.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+........++||||||+++||||||||+..        ...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~--------~~~~~V~~G~~~~~~~~--~~~~   70 (236)
T 1elt_A            1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDS--------ARTWRVVLGEHNLNTNE--GKEQ   70 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSS--------CCCEEEEESCSBTTSCC--SCCE
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCceeeEEEEEEEeCCEEEECHHhhCC--------cCceEEEEccccCCCCC--CCcE
Confidence            7899999999999999998764433358999999999999999999964        35789999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCC--CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~--~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.|+++++||+|+....  .||||||||++|+.|++.|+|||||.....      ......|. .+|||.....+  ..
T Consensus        71 ~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~------~~~~~~~~-v~GwG~~~~~~--~~  141 (236)
T 1elt_A           71 IMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQI------LPNNNPCY-ITGWGKTSTGG--PL  141 (236)
T ss_dssp             EECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCC------CCTTCCEE-EEESCCSSTTC--CC
T ss_pred             EEEEEEEEECCCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCCcccc------CCCCCEEE-EEeCCCcCCCC--Cc
Confidence            899999999999998876  899999999999999999999999976541      11122444 57777643211  12


Q ss_pred             EeeeeEEEEeecCeeecccc----------ceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CC
Q psy15989        178 LRGIVSITVARDGLRVCDTK----------HYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TK  246 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~----------~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~  246 (363)
                      ...|+...+++++...|...          +.|......+.|.|||||||++..+++|+|+||+|++.    ...|. ..
T Consensus       142 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~----~~~C~~~~  217 (236)
T 1elt_A          142 SDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVS----SSGCNASK  217 (236)
T ss_dssp             CSBCEEEECCEECHHHHTSTTTTGGGSCTTEEEECCSSCBCCTTCTTCEEEEEETTEEEEEEEEEECC----SSCTTCTT
T ss_pred             ChhheEeEeeecCHHHhccccccCCcCCcceEEecCCCCccCCCCCCCeeEEEECCEEEEEEEEEEeC----CCCCCCCC
Confidence            34566778888888889753          23454445789999999999999899999999999941    22465 46


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .+.+|++|..
T Consensus       218 ~p~vyt~V~~  227 (236)
T 1elt_A          218 KPTVFTRVSA  227 (236)
T ss_dssp             CCEEEEEGGG
T ss_pred             CCeEEEEHHH
Confidence            7899999865

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=8.1e-43  Score=324.97  Aligned_cols=229  Identities=25%  Similarity=0.390  Sum_probs=172.8

Q ss_pred             CCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEece
Q psy15989          7 SCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGK   86 (363)
Q Consensus         7 ~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~   86 (363)
                      .||..    ...||+||.+|.+++|||||+|+........++||||||+++||||||||+...      ....+.|++|.
T Consensus       110 ~CG~~----~~~rIvgG~~a~~~e~Pw~v~L~~~~~g~~~~~CGGsLIs~~~VLTAAHCv~~~------~~~~~~V~lG~  179 (408)
T 2xxl_A          110 DCGNF----LSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGL------QNDLYEIRLGE  179 (408)
T ss_dssp             CCSCC----CCCCCCSSCBCCTTSSTTEEEEEEECSSSEEEEEEEEEEETTEEEECGGGTTTC------TTTEEEEEESC
T ss_pred             ccCCC----CCCceECCEECCCCCCCcEEEEEeecCCceeEEEEEEEEECCEEEEcHHhcCCC------CCceEEEEeee
Confidence            79932    457999999999999999999987543234789999999999999999999753      24578999999


Q ss_pred             ecccccCC----------CCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeec
Q psy15989         87 YHQHQFSD----------EGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG  156 (363)
Q Consensus        87 ~~~~~~~~----------~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~  156 (363)
                      +++....+          ....+.+.|+++++||+|+..+..||||||||++|+.|+++|+|||||.......   ....
T Consensus       180 ~~~~~~~~~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~---~~~~  256 (408)
T 2xxl_A          180 HRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKE---KAEQ  256 (408)
T ss_dssp             SBTTCSCCEEEETTEEEECCCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHH---HTTT
T ss_pred             eECCCccchhhcccccccCCceEEEeEEEEEeCCCCCccccccceEEEEECCccccccCccccCCCCcccccc---cccC
Confidence            98765431          1245788999999999999989999999999999999999999999986532000   0001


Q ss_pred             eeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeecccc--------ceEEec-CCCccCcccccceeEE------EE
Q psy15989        157 TSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK--------HYVVFT-DVANVCNGDSGGGMVF------KI  221 (363)
Q Consensus       157 ~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~~-~~~~~C~gdsGgpl~~------~~  221 (363)
                      ...|. .+|||.+....   ....|+...+++++...|...        +.|+.. ..++.|.|||||||++      ..
T Consensus       257 ~~~~~-v~GWG~t~~~~---~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~iCAg~~~g~d~C~GDSGGPL~~~~~~~~~~  332 (408)
T 2xxl_A          257 ISTYF-VTGWGTTENGS---SSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEY  332 (408)
T ss_dssp             CSEEE-EEECCCBTTBC---SCSBCEEEEEEEECHHHHHHHHTSCCCTTEEEECCSCSSSGGGSCTTCEEEEEECCTTCS
T ss_pred             CCEEE-EEEeCcCCCCC---CCchheEeeeeecCHHHHHHHhcccCCCceEeecCCCCCccCCCcccChhhcCccceEEE
Confidence            12444 67888653222   234577888888999999642        234433 3568999999999954      44


Q ss_pred             cCccEEEEEEEEEEecCcceecCC-CcceEEEeeeEE
Q psy15989        222 DSAWYLRGIVSITVARDGLRVCDT-KHYVVFTDVKRV  257 (363)
Q Consensus       222 ~~~~~l~Gi~s~~~~~~g~~~c~~-~~~~v~~~V~~i  257 (363)
                      +++|+|+||+||     |...|.. ..+.+|++|..+
T Consensus       333 ~~~~~l~GIvS~-----G~~~Cg~~~~PgVYTrVs~y  364 (408)
T 2xxl_A          333 APKMVEFGIVSQ-----GVVTCGQISLPGLYTNVGEY  364 (408)
T ss_dssp             SCEEEEEEEEEE-----CCCCTTSCCCCEEEEEGGGG
T ss_pred             CCEEEEEEEEEE-----CCCCCCCCCCCeEEEEHHHH
Confidence            568999999999     4334654 568999998764

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=6.1e-43  Score=306.89  Aligned_cols=215  Identities=29%  Similarity=0.473  Sum_probs=163.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...   ..++||||||+++||||||||+..        ...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---~~~~CgGsLI~~~~VLTAAHC~~~--------~~~~~v~~G~~~~~~~~--~~~~   67 (250)
T 1aut_C            1 LIDGKMTRRGDSPWQVVLLDSK---KKLACGAVLIHPSWVLTAAHCMDE--------SKKLLVRLGEYDLRRWE--KWEL   67 (250)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT---SCEEEEEEEEETTEEEECGGGSSS--------CSCCEEEESCCBTTCCC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEecCC---CceEEEEEEeeCCEEEEChHHcCC--------CCceEEEEcccccCCCC--CccE
Confidence            7999999999999999997532   268999999999999999999964        34678999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCee---
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAW---  176 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~---  176 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|+++|+|||||........  .......|. .+|||.........   
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~--~~~~g~~~~-v~GwG~~~~~~~~~~~~  144 (250)
T 1aut_C           68 DLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERE--LNQAGQETL-VTGWGYHSSREKEAKRN  144 (250)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHT--TTSTTCEEE-EEECCCCCSCCSCCCSS
T ss_pred             EEEEEEEEECCCCCCCCCCCcEEEEEECCcccCCCceeeeEcCCCcccccc--ccCCCCEEE-EEEeCCCCCCCcccccc
Confidence            899999999999999899999999999999999999999999864310000  000112444 57787653322110   


Q ss_pred             EEeeeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-C
Q psy15989        177 YLRGIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-T  245 (363)
Q Consensus       177 ~~~~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~  245 (363)
                      ....|+...+++++...|...        +.|...  ...+.|.|||||||++..+++|+|+||+|++     . .|. .
T Consensus       145 ~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~g~~~l~GI~S~g-----~-~C~~~  218 (250)
T 1aut_C          145 RTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWG-----E-GCGLL  218 (250)
T ss_dssp             CSSBCEEEEEEEECHHHHHHHCSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEC-----S-SSSCT
T ss_pred             ccceeeEEEEEEecHHHhhHHhccCCCCCEEEeCCCCCCCCCCCCCCchheEEEECCeEEEEEEEEEC-----C-CCCCC
Confidence            012466778888888889632        234432  3468999999999999888999999999994     3 354 4


Q ss_pred             CcceEEEeeeE
Q psy15989        246 KHYVVFTDVKR  256 (363)
Q Consensus       246 ~~~~v~~~V~~  256 (363)
                      ..+.+|++|..
T Consensus       219 ~~p~vyt~V~~  229 (250)
T 1aut_C          219 HNYGVYTKVSR  229 (250)
T ss_dssp             TCCEEEECGGG
T ss_pred             CCCEEEEEHHH
Confidence            67899999875

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=1e-42  Score=304.92  Aligned_cols=221  Identities=28%  Similarity=0.425  Sum_probs=167.0

Q ss_pred             CCCCccccCC--ccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEE
Q psy15989          6 VSCGTVVYNK--AQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIY   83 (363)
Q Consensus         6 ~~CG~~~~~~--~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~   83 (363)
                      .+||++....  ...||+||++|.+++|||||+|+...   ..++||||||+++||||||||+....     .+..+.|+
T Consensus         2 ~~cg~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~---~~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~~~~v~   73 (247)
T 1ddj_A            2 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF---GMHFCGGTLISPEWVLTAAHCLEKSP-----RPSSYKVI   73 (247)
T ss_dssp             CCTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTT---SCEEEEEEEEETTEEEECGGGGTTCS-----CGGGCEEE
T ss_pred             CccCCCCCCCcccCCCcCCCEECCCCCCCcEEEEEcCC---CCeEEEEEEeeCCEEEEcHHHcCCCC-----CCccEEEE
Confidence            4799863221  24699999999999999999997542   26899999999999999999997532     34578999


Q ss_pred             eceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCC
Q psy15989         84 LGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGD  163 (363)
Q Consensus        84 ~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~  163 (363)
                      +|.++.....  ...+.+.|.+++.||.      .||||||||++|+.|+++|+|||||.....      ......|. .
T Consensus        74 ~G~~~~~~~~--~~~~~~~v~~~~~hp~------~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v  138 (247)
T 1ddj_A           74 LGAHQEVNLE--PHVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYV------VADRTECF-I  138 (247)
T ss_dssp             ESCSBSSSCC--TTCEEEEEEEEEECTT------SCSCEEEEESSCCCCCSSCCCCBCCCTTCC------CCTTCEEE-E
T ss_pred             EcccccCccC--CceEEEEeeeEEcCCC------CCcEEEEEeCCceeeCCCEEeeecCCcccC------CCCCCEEE-E
Confidence            9998765433  4567889999999996      479999999999999999999999976541      11223454 6


Q ss_pred             CCccceEEecCeeEEeeeeEEEEeecCeeecccc----------ceEEec--CCCccCcccccceeEEEEcCccEEEEEE
Q psy15989        164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIV  231 (363)
Q Consensus       164 ~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~  231 (363)
                      +|||.+.....   ...|+...+++++...|...          +.|...  ...+.|.|||||||++..+++|+|+||+
T Consensus       139 ~GwG~~~~~~~---~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~  215 (247)
T 1ddj_A          139 TGWGETQGTFG---AGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVT  215 (247)
T ss_dssp             EECCCCSSSTT---TTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEE
T ss_pred             EEcccCCCCCC---CccceEEeeeecCHHHhcchhccCCCCcCCeEeecCCCCCCccccCcCcCcEEEEECCcEEEEEEE
Confidence            78876432111   23466778888888889642          234432  3468999999999999988899999999


Q ss_pred             EEEEecCcceecCCCcceEEEeeeEE
Q psy15989        232 SITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       232 s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      |+     +..++....+.+|++|..+
T Consensus       216 S~-----g~~C~~~~~p~vyt~V~~y  236 (247)
T 1ddj_A          216 SW-----GLGCARPNKPGVYVRVSRF  236 (247)
T ss_dssp             CG-----GGCCBBTTBCEEEEEGGGS
T ss_pred             EE-----CCCCCCCCCCEEEEEhHHh
Confidence            99     4333344678999998753

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=2.8e-42  Score=299.45  Aligned_cols=208  Identities=25%  Similarity=0.410  Sum_probs=161.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..+    .++||||||+++||||||||+....     .+..+.|++|.+..      ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAhC~~~~~-----~~~~~~v~~G~~~~------~~~~   65 (232)
T 2oq5_A            1 IVGGTEVEEGEWPWQASLQWDG----SHRCGATLINATWLVSAAHCFTTYK-----NPARWTASFGVTIK------PSKM   65 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGGSSCC-----CGGGEEEEESSBST------TCSE
T ss_pred             CCCCEECCCCCCCeeEEEEeCC----CeeEEEEEEcCCEEEECHHHcCCCC-----CCceEEEEEeeEEC------CCce
Confidence            7899999999999999998643    7999999999999999999997532     34678999998642      3347


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....      ......|. .+|||.....+.  ...
T Consensus        66 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~  136 (232)
T 2oq5_A           66 KRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYE------FQPGDVMF-VTGFGALKNDGY--SQN  136 (232)
T ss_dssp             EEEEEEEEECTTCCTTCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCC------CCTTCEEE-EEESCCSSTTCC--CCS
T ss_pred             EEeEEEEEeCCCCCCCCCCCCEEEEEecCCCccCCceeEeECCCcccc------CCCCCEEE-EEECCccCCCCC--CCc
Confidence            889999999999999889999999999999999999999999976541      11123454 677875432111  234


Q ss_pred             eeeEEEEeecCeeecccc----------ceEEec--CCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecCCC
Q psy15989        180 GIVSITVARDGLRVCDTK----------HYVVFT--DVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCDTK  246 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~----------~~~~~~--~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~~~  246 (363)
                      .|+...+++++...|...          +.|...  ...+.|.|||||||++.. +++|+|+||+|++     ..++...
T Consensus       137 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g-----~~C~~~~  211 (232)
T 2oq5_A          137 HLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWG-----DECAKPN  211 (232)
T ss_dssp             BCEEEEEEEECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEEC-----SSSSBTT
T ss_pred             eeeEeEEEEeCHHHcCCccccCCccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeC-----CCCCCCC
Confidence            567778888888899742          235443  236899999999999975 6789999999994     3333346


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .+.+|++|..
T Consensus       212 ~p~vyt~V~~  221 (232)
T 2oq5_A          212 KPGVYTRVTA  221 (232)
T ss_dssp             BCEEEEETGG
T ss_pred             CCeEEEEhHH
Confidence            7899999865

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=1.1e-42  Score=306.21  Aligned_cols=215  Identities=28%  Similarity=0.465  Sum_probs=164.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+..+    .++||||||+++||||||||+....     ....+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~~~~-----~~~~~~v~~G~~~~~~~~--~~~~   69 (254)
T 2bz6_H            1 IVGGKVCPKGECPWQVLLLVNG----AQLCGGTLINTIWVVSAAHCFDKIK-----NWRNLIAVLGEHDLSEHD--GDEQ   69 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEECSSSEEEECGGGGTTCS-----CGGGEEEEESCCBTTCCC--SCCE
T ss_pred             CCCCEECCCCCcCCEEEEEeCC----CcEEEEEEecCCEEEECHHHcCCCC-----CcceEEEEECCcccCCCC--CCcE
Confidence            7999999999999999998532    7899999999999999999997532     235699999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|+++|+|||||.......   .......|. .+|||.....+.  ...
T Consensus        70 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~---~~~~~~~~~-v~GwG~~~~~~~--~~~  143 (254)
T 2bz6_H           70 SRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSER---TLAFVRFSL-VSGWGQLLDRGA--TAL  143 (254)
T ss_dssp             EEEEEEEEEETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHH---TGGGCCEEE-EEESCBSSTTSC--BCS
T ss_pred             EEEEEEEEECCCCCCCCCcCcEEEEEECCccccCCCccceECCCCccccc---cccCCCcEE-EEeCcccCCCCC--CCh
Confidence            89999999999999988999999999999999999999999986542000   001112444 577775432211  123


Q ss_pred             eeeEEEEeecCeeecccc-------------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC
Q psy15989        180 GIVSITVARDGLRVCDTK-------------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD  244 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~-------------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~  244 (363)
                      .|+...+++++...|...             +.|...  ...+.|.|||||||++..+++|+|+||+|++     .. |.
T Consensus       144 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~~~l~GI~S~g-----~~-C~  217 (254)
T 2bz6_H          144 ELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWG-----QG-CA  217 (254)
T ss_dssp             BCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEEC-----SS-SS
T ss_pred             hheeeeeeeecHHHHhhhhhccccCCccCCCEEeecCCCCCCccccccCCCceEEeECCEEEEEEEEEEC-----CC-CC
Confidence            466777888888888532             234332  2368999999999999988999999999994     33 54


Q ss_pred             -CCcceEEEeeeEE
Q psy15989        245 -TKHYVVFTDVKRV  257 (363)
Q Consensus       245 -~~~~~v~~~V~~i  257 (363)
                       ...+.+|++|..+
T Consensus       218 ~~~~p~vyt~V~~~  231 (254)
T 2bz6_H          218 TVGHFGVYTRVSQY  231 (254)
T ss_dssp             CTTCCEEEEEGGGG
T ss_pred             CCCCCeEEEEHHHH
Confidence             4678999998763

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=4.2e-42  Score=299.85  Aligned_cols=209  Identities=20%  Similarity=0.310  Sum_probs=162.9

Q ss_pred             ceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCC
Q psy15989         18 PLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGG   97 (363)
Q Consensus        18 ~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~   97 (363)
                      .||+||++|.+++|||||+|+..+    .++||||||+++||||||||+....     ....+.|++|.+++....  ..
T Consensus         1 ~rIvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~~~~-----~~~~~~v~~G~~~~~~~~--~~   69 (240)
T 1mza_A            1 MEIIGGKEVSPHSRPFMASIQYGG----HHVCGGVLIDPQWVLTAAHCQYRFT-----KGQSPTVVLGAHSLSKNE--AS   69 (240)
T ss_dssp             CCCCCCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGSCTTC-----SCSCEEEEESCSBSSSCC--TT
T ss_pred             CceECCEECCCCCCCeEEEEeeCC----ceEEEEEEecCCEEEECHHhCCCCC-----CCCCeEEEeCceecCCCC--Cc
Confidence            379999999999999999998643    7999999999999999999986421     245789999999876543  45


Q ss_pred             ceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989         98 VQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus        98 ~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.+.|+++++||+|+..+..||||||+|++|+.|++.|+|||||.....      ..+ ..|. .+|||.+...+. ..
T Consensus        70 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~------~~~-~~~~-v~GwG~~~~~~~-~~  140 (240)
T 1mza_A           70 KQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSL------RSG-TKCK-VTGWGATDPDSL-RP  140 (240)
T ss_dssp             CEEEEEEEEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCC------CTT-CEEE-EEECCCSSTTCS-SC
T ss_pred             eEEEEEEEEEeCCCccCCCCCceEEEEEeCCCcccCCceeeeecCCcccC------CCC-CEEE-EEeCCcCCCCCC-Cc
Confidence            68899999999999999889999999999999999999999999974321      112 3454 678886532211 02


Q ss_pred             EeeeeEEEEeecCeeecc--cc----------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceec
Q psy15989        178 LRGIVSITVARDGLRVCD--TK----------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC  243 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~--~~----------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c  243 (363)
                      ...|+...+++++...|.  ..          +.|...  ...+.|.|||||||++..    +|+||+|++     . .|
T Consensus       141 ~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~~----~l~Gi~S~g-----~-~C  210 (240)
T 1mza_A          141 SDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKG----VFHAIVSGG-----H-EC  210 (240)
T ss_dssp             CSBCEEEEEEECCHHHHTSTTTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEETT----EEEEEECSS-----C-CS
T ss_pred             cccceEeEEEEeCHHHcCCcceeCCCCcCCCCeEeecCCCCCCccCCCCCCCeeEECC----EEEEEEEEC-----C-CC
Confidence            345778888999999997  21          234442  346899999999999843    899999984     3 46


Q ss_pred             C-CCcceEEEeeeE
Q psy15989        244 D-TKHYVVFTDVKR  256 (363)
Q Consensus       244 ~-~~~~~v~~~V~~  256 (363)
                      . ...+.+|++|..
T Consensus       211 ~~~~~p~vyt~v~~  224 (240)
T 1mza_A          211 GVATKPGIYTLLTK  224 (240)
T ss_dssp             SCTTCCEEEEECCH
T ss_pred             CCCCCCcEEEeChH
Confidence            5 367899999865

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=5.4e-42  Score=298.87  Aligned_cols=212  Identities=21%  Similarity=0.374  Sum_probs=167.1

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||+|+|+...  ...++||||||+++||||||||+...      .+..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--~~~~~CgGtLIs~~~VLTAAHC~~~~------~~~~~~v~~G~~~~~~~~--~~~~   70 (238)
T 1ym0_A            1 IVGGIEARPYEFPWQVSVRRKS--SDSHFCGGSIINDRWVVCAAHCMQGE------APALVSLVVGEHDSSAAS--TVRQ   70 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEEGG--GTEEEEEEEEEETTEEEECHHHHTTC------CGGGEEEEESCSBTTSCC--SSCE
T ss_pred             CCCCEECCCCccCCEEEEEeCC--CCceEEEEEEeeCCEEEECHHhCCCC------CCceEEEEEcccccCCCC--CCce
Confidence            7899999999999999998753  23789999999999999999999753      346799999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....      ..+ ..|. .+|||.....+. ....
T Consensus        71 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~------~~~-~~~~-~~GwG~~~~~~~-~~~~  141 (238)
T 1ym0_A           71 THDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPAND------YVY-RKSQ-CSGWGTINSGGV-CCPA  141 (238)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCC------CTT-CEEE-EEESCCSSTTCC-SCCS
T ss_pred             EEEEEEEEECCCCCCCCCcccEEEEEeCCCccccCcccccCCCCCcCC------CCC-CceE-EEeecCCCCCCC-cCCc
Confidence            899999999999999889999999999999999999999999976541      111 2344 577775432211 1134


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEecC--C--CccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecCC
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVFTD--V--ANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCDT  245 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~~~--~--~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~~  245 (363)
                      .|+...+++.+...|...         +.|....  .  .+.|.|||||||++.. +++|+|+||+|++     . .|..
T Consensus       142 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g-----~-~C~~  215 (238)
T 1ym0_A          142 VLRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWG-----I-GCAS  215 (238)
T ss_dssp             BCEEEEEEECCHHHHHHHCTTSCCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEEC-----S-SSSS
T ss_pred             cceEEEEEeeCHHHHhHhhcccccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeEC-----C-CCCC
Confidence            567788888888889632         2344332  2  6899999999999987 7899999999994     2 4766


Q ss_pred             CcceEEEeeeE
Q psy15989        246 KHYVVFTDVKR  256 (363)
Q Consensus       246 ~~~~v~~~V~~  256 (363)
                      ..+.+|++|..
T Consensus       216 ~~p~vyt~v~~  226 (238)
T 1ym0_A          216 GYPGVYSRVGF  226 (238)
T ss_dssp             SSCEEEEEHHH
T ss_pred             CCCcEEEEHHH
Confidence            77899999865

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=5.6e-42  Score=300.57  Aligned_cols=212  Identities=25%  Similarity=0.414  Sum_probs=166.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..     .++||||||+++||||||||+....     ....+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~-----~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~~~~V~~G~~~~~~~~--~~~~   68 (248)
T 2r0l_A            1 IIGGSSSLPGSHPWLAAIYIG-----DSFCAGSLVHTCWVVSAAHCFSHSP-----PRDSVSVVLGQHFFNRTT--DVTQ   68 (248)
T ss_dssp             CBSCEECCTTSSTTEEEEEET-----TEEEEEEEEETTEEEECGGGGTTCC-----CGGGEEEEESCCBTTCCC--SSCE
T ss_pred             CCCCccCCCCCCCeEEEEEcC-----CceEEEEEEcCCEEEECHHHcCCCC-----CcCcEEEEEEeEEcCCCC--CccE
Confidence            789999999999999999763     5789999999999999999997531     246799999999876543  4568


Q ss_pred             eeeeeEEEECCCCCC-CCCCCCeEEEEeCCc----ccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC
Q psy15989        100 NKQVKRVHIYPTFNS-SNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS  174 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~-~~~~nDIALl~L~~~----~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~  174 (363)
                      .+.|+++++||+|+. ....||||||+|++|    +.|+++|+|||||.....      ......|. .+|||.......
T Consensus        69 ~~~v~~i~~hp~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~  141 (248)
T 2r0l_A           69 TFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGST------FPAGHKCQ-IAGWGHLDENVS  141 (248)
T ss_dssp             EECEEEEEECTTCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCC------CCTTCEEE-EEESCCSSSSCC
T ss_pred             EEeeeEEEeCCccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCC------CCCCCEEE-EEEccccCCCCC
Confidence            899999999999988 778999999999999    899999999999975441      11223455 678886532211


Q ss_pred             eeEEeeeeEEEEeecCeeecccc----------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCccee
Q psy15989        175 AWYLRGIVSITVARDGLRVCDTK----------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRV  242 (363)
Q Consensus       175 ~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~  242 (363)
                       .....|+...+++++...|...          +.|...  ...+.|.|||||||++..+++|+|+||+|++     . .
T Consensus       142 -~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g-----~-~  214 (248)
T 2r0l_A          142 -GYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWG-----D-G  214 (248)
T ss_dssp             -SCCSBCEEEEEEBCCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEEC-----S-T
T ss_pred             -CCCchheEEEEeeeCHHHhCCccccCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEECCcEEEEEEEEeC-----C-C
Confidence             1234577888889999999742          234432  2468999999999999999999999999994     2 3


Q ss_pred             cC-CCcceEEEeeeEE
Q psy15989        243 CD-TKHYVVFTDVKRV  257 (363)
Q Consensus       243 c~-~~~~~v~~~V~~i  257 (363)
                      |. ...+.+|++|..+
T Consensus       215 C~~~~~p~vyt~V~~~  230 (248)
T 2r0l_A          215 CGRLHKPGVYTRVANY  230 (248)
T ss_dssp             TTCTTCCEEEEEGGGG
T ss_pred             CCCCCCCcEEEEHHHH
Confidence            54 4678999998753

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=1.7e-42  Score=298.63  Aligned_cols=203  Identities=24%  Similarity=0.374  Sum_probs=160.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..+    .++||||||+++||||||||+....     +...+.|++|.+++.     ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~~~~-----~~~~~~v~~G~~~~~-----~~~~   66 (222)
T 1eq9_A            1 IVGGKDAPVGKYPYQVSLRLSG----SHRCGASILDNNNVLTAAHCVDGLS-----NLNRLKVHVGTNYLS-----ESGD   66 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEECSSSEEEECHHHHTTCS-----CGGGEEEEESCSBTT-----SCCE
T ss_pred             CCCCEECCCCCcceEEEEEeCC----CeEEEEEEeeCCEEEEhhhcCCCCC-----CCceEEEEECceecC-----CCCe
Confidence            7899999999999999998643    7899999999999999999996531     246799999998774     4458


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|++.|+|||||.....       .....|. .+|||.....+  ....
T Consensus        67 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~-------~~~~~~~-v~GwG~~~~~~--~~~~  136 (222)
T 1eq9_A           67 VYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDED-------LESNPCT-LTGWGSTRLGG--NTPN  136 (222)
T ss_dssp             EEEEEEEEECTTCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTT-------CTTSEEE-EEECCCSSTTC--CCCS
T ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCccccCCceEccCCCCCCcC-------CCCCEEE-EEcccccCCCC--cccc
Confidence            899999999999999889999999999999999999999999976651       1122444 57787653211  1234


Q ss_pred             eeeEEEEeecCeeecc-c------cceEEec-CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEE
Q psy15989        180 GIVSITVARDGLRVCD-T------KHYVVFT-DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF  251 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~-~------~~~~~~~-~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~  251 (363)
                      .|+...+++.+...|. .      .+.|... ...+.|.|||||||++..    +|+||+|++     . .|....+.+|
T Consensus       137 ~L~~~~~~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g-----~-~C~~~~p~vy  206 (222)
T 1eq9_A          137 ALQEIELIVHPQKQCERDQWRVIDSHICTLTKRGEGACHGDSGGPLVANG----AQIGIVSFG-----S-PCALGEPDVY  206 (222)
T ss_dssp             BCEEEEEEEECHHHHHHHSSSCCTTEEEECCCTTCBCCTTCTTCEEEETT----EEEEEEEEC-----S-TTTSSSCEEE
T ss_pred             hheEeEEEEeCHHHhCcccCCCCccEEeecCCCCCeeeeCCccceEEECC----EEEEEEEEC-----C-CcCCCCCCEE
Confidence            5677788888888997 2      2344443 356899999999999843    899999994     2 4766778999


Q ss_pred             EeeeE
Q psy15989        252 TDVKR  256 (363)
Q Consensus       252 ~~V~~  256 (363)
                      ++|..
T Consensus       207 t~V~~  211 (222)
T 1eq9_A          207 TRVSS  211 (222)
T ss_dssp             EEGGG
T ss_pred             EEHHH
Confidence            99875

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.7e-43  Score=328.35  Aligned_cols=229  Identities=28%  Similarity=0.475  Sum_probs=168.8

Q ss_pred             cceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCC
Q psy15989         17 QPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEG   96 (363)
Q Consensus        17 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~   96 (363)
                      ..||+||.+|.+++|||||+|+....  ..++||||||+++||||||||+.............+.|++|.+++.... ..
T Consensus       163 ~~RIvgG~~a~~g~~Pw~v~l~~~~~--~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~-~~  239 (424)
T 3nxp_A          163 DGRIVEGSDAEIGMSPWQVMLFRKSP--QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYE-RN  239 (424)
T ss_dssp             SSCCCCCEECCTTSCTTEEEEEETTT--TEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCC-TT
T ss_pred             CCeeECCEECCCCCCCCEEEEeecCC--CCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccccC-CC
Confidence            56999999999999999999976532  2789999999999999999999632211122456899999999876543 13


Q ss_pred             CceeeeeeEEEECCCCC-CCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEe---
Q psy15989         97 GVQNKQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKI---  172 (363)
Q Consensus        97 ~~~~~~V~~i~~hp~y~-~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~---  172 (363)
                      ..+.+.|++|++||+|+ ..++.||||||+|++|+.|+++|+|||||.......   .......|. .+|||.+...   
T Consensus       240 ~~~~~~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~---~~~~g~~~~-v~GWG~t~~~~~~  315 (424)
T 3nxp_A          240 IEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAAS---LLQAGYKGR-VTGWGNLKETWTA  315 (424)
T ss_dssp             TCEEECEEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHH---HHHHCSEEE-EEESSHHHHHHHH
T ss_pred             ceeEEEEEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCcccccc---cccCCCeEE-EEecCCCCccCcc
Confidence            45677899999999998 457889999999999999999999999986542000   001122455 6888864321   


Q ss_pred             -cCeeEEeeeeEEEEeecCeeecccc--------ceEEec-----CCCccCcccccceeEEEE--cCccEEEEEEEEEEe
Q psy15989        173 -DSAWYLRGIVSITVARDGLRVCDTK--------HYVVFT-----DVANVCNGDSGGGMVFKI--DSAWYLRGIVSITVA  236 (363)
Q Consensus       173 -~~~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~~-----~~~~~C~gdsGgpl~~~~--~~~~~l~Gi~s~~~~  236 (363)
                       ........|+.+.+++++...|...        +.|+..     ...+.|.|||||||++..  +++|+|+||+||+  
T Consensus       316 ~~~~~~~~~L~~~~v~ii~~~~C~~~~~~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G--  393 (424)
T 3nxp_A          316 NVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWG--  393 (424)
T ss_dssp             C----CCSBCEEEEEEBCCHHHHHHTCSSCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCS--
T ss_pred             ccCCCCCccceEEEeeEEcHHHhhhhccCcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeC--
Confidence             0111134577888999999999643        234432     234899999999999986  7899999999994  


Q ss_pred             cCcceecCCCcceEEEeeeEE
Q psy15989        237 RDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       237 ~~g~~~c~~~~~~v~~~V~~i  257 (363)
                         ..++....+.+|++|..+
T Consensus       394 ---~~C~~~~~pgVyT~Vs~y  411 (424)
T 3nxp_A          394 ---EGCDRDGKYGFYTHVFRL  411 (424)
T ss_dssp             ---SCTTTCCSCEEEEECTTC
T ss_pred             ---CCCCCCCCCEEEEEHHHH
Confidence               333334678999998653

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=1.7e-42  Score=302.59  Aligned_cols=214  Identities=26%  Similarity=0.423  Sum_probs=163.0

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||+|+|+...   ..++||||||+++||||||||+..        ...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---~~~~CgGtLIs~~~VLTAAhC~~~--------~~~~~V~~G~~~~~~~~--~~~~   67 (241)
T 2jkh_A            1 IVGGQECKDGECPWQALLINEE---NEGFCGGTILSEFYILTAAHCLYQ--------AKRFKVRVGDRNTEQEE--GGEA   67 (241)
T ss_dssp             CBSSEECCTTSSTTEEEEECTT---SCEEEEEEECSSSEEEECGGGGGS--------CSSCEEEESCSBTTCCC--SCCE
T ss_pred             CCCCEECCCCCcCcEEEEEcCC---CCcEEEEEEeeCCEEEEcHHHcCC--------CCcEEEEECCccCCCCC--CCcE
Confidence            7899999999999999997532   268999999999999999999964        24688999998876543  4567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|+++|+|||||.......   .......|. .+|||.....+.  ...
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~---~~~~~~~~~-v~GwG~~~~~~~--~~~  141 (241)
T 2jkh_A           68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAES---TLMTQKTGI-VSGFGRTHEKGE--QST  141 (241)
T ss_dssp             EECEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHH---HTTTSSEEE-EEESCBSSTTSC--BCS
T ss_pred             EEEeEEEEeCCCCCCCCCCCcEEEEEECCcccCCCCEeeeEcCCCCcccc---cccCCCeEE-EEecCCCCCCCC--cCc
Confidence            89999999999999988999999999999999999999999986532000   000112444 577775432111  123


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .|+...+++++...|...        +.|...  ...+.|.|||||||++..+++|+|+||+|++     ..++....+.
T Consensus       142 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g-----~~C~~~~~p~  216 (241)
T 2jkh_A          142 RLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWG-----EGCARKGKYG  216 (241)
T ss_dssp             BCEEEEEEEECHHHHHHHCSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEEC-----SSSSCTTCCE
T ss_pred             cccEeeeccccHHHhcccccCcCCCCeEEeeCCCCCCccCcCcCCCeeEEEECCEEEEEEEEEEC-----CCCCCCCCce
Confidence            466777888888888632        234432  3468999999999999988999999999994     3333346789


Q ss_pred             EEEeeeEE
Q psy15989        250 VFTDVKRV  257 (363)
Q Consensus       250 v~~~V~~i  257 (363)
                      +|++|..+
T Consensus       217 vyt~V~~~  224 (241)
T 2jkh_A          217 IYTKVTAF  224 (241)
T ss_dssp             EEEEGGGG
T ss_pred             EEEEhHHH
Confidence            99998753

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=1.6e-42  Score=301.53  Aligned_cols=210  Identities=29%  Similarity=0.476  Sum_probs=162.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||+|+|+...    .++||||||+++||||||||+..        ...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAhC~~~--------~~~~~v~~G~~~~~~~~--~~~~   66 (235)
T 2wph_S            1 VVGGEDAKPGQFPWQVVLNGKV----DAFCGGSIVNEKWIVTAAHCVET--------GVKITVVAGEHNIEETE--HTEQ   66 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEESSS----TTCEEEEEEETTEEEECGGGCCT--------TSCCEEEESCCBTTSCC--SCCE
T ss_pred             CCCCEECCCCCCCeEEEEccCC----CeeEEEEEEeCCEEEECHHHCcC--------CCCEEEEEcccccCCCC--CCcE
Confidence            7899999999999999997543    67899999999999999999964        23588999999876543  4568


Q ss_pred             eeeeeEEEECCCCCC--CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNS--SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~--~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.|.++++||+|+.  .+..||||||||++|+.|+++|+|||||.......    ......|. .+|||.....+.  .
T Consensus        67 ~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~----~~~~~~~~-v~GwG~~~~~~~--~  139 (235)
T 2wph_S           67 KRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNI----FLKFGSGY-VSGWGRVFHKGR--S  139 (235)
T ss_dssp             EEEEEEEEECTTTTSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHH----HHHTCEEE-EEESSBSSTTSC--B
T ss_pred             EeeeEEEEeCCCCcccCCcCCCCEEEEEECCcCcCCCCccccCCCCCccccc----ccCCccEE-EEeCCCccCCCC--c
Confidence            899999999999988  67889999999999999999999999986542000    00112444 577875432211  2


Q ss_pred             EeeeeEEEEeecCeeecccc--------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CC
Q psy15989        178 LRGIVSITVARDGLRVCDTK--------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TK  246 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~--------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~  246 (363)
                      ...|+...+++.+...|...        +.|..  ....+.|.|||||||++..+++|+|+||+|++     .. |. ..
T Consensus       140 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g-----~~-C~~~~  213 (235)
T 2wph_S          140 ALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWG-----EE-CAMKG  213 (235)
T ss_dssp             CSBCEEEEEEEECHHHHHHTCSSCCCTTEEEESCTTCSCBCCTTCTTCEEEEEETTEEEEEEEEEEC-----SS-SSCTT
T ss_pred             cchheEeeeeeeCHHHhcCcccCCCCCCEEEeCCCCCCCccCCCCCCCceEEeECCeEEEEEEEEEC-----CC-CCCCC
Confidence            34467778888888889632        23443  23468999999999999989999999999994     33 54 46


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .+.+|++|..
T Consensus       214 ~p~vyt~V~~  223 (235)
T 2wph_S          214 KYGIYTKVSR  223 (235)
T ss_dssp             CCEEEEEGGG
T ss_pred             CCeEEEEHHH
Confidence            7899999865

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=8.7e-42  Score=297.53  Aligned_cols=206  Identities=27%  Similarity=0.407  Sum_probs=161.1

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+...       ...+.|++|.+++..     ..+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~~~-------~~~~~v~~G~~~~~~-----~~~   64 (240)
T 2zgc_A            1 IIGGREVIPHSRPYMASLQRNG----SHLCGGVLVHPKWVLTAAHCLAQR-------MAQLRLVLGLHTLDS-----PGL   64 (240)
T ss_dssp             CBTCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGGCSC-------GGGEEEEESCSBSSS-----CCE
T ss_pred             CCCCEECCCCCcCcEEEEEeCC----CeEEEEEEEcCCEEEEcHHhcCCC-------CCCEEEEecccccCC-----CCe
Confidence            7999999999999999998632    799999999999999999999652       237899999987753     347


Q ss_pred             eeeeeEEEECCCCCCCC-CCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEE
Q psy15989        100 NKQVKRVHIYPTFNSSN-YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL  178 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~-~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~  178 (363)
                      .+.|+++++||+|+..+ ..||||||||++|+.|+++|+|||||.....      ......|. .+|||.....+  ...
T Consensus        65 ~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~--~~~  135 (240)
T 2zgc_A           65 TFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQV------VAAGTRCS-MAGWGLTHQGG--RLS  135 (240)
T ss_dssp             EEEEEEEEECTTCBCTTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCC------CCTTCEEE-EEECCBSSTTC--CBC
T ss_pred             EEEEEEEEECCCCCCCCCCcccEEEEEeCCcccCCCceeeeEcCCCCCC------CCCCCEEE-EEECCcccCCC--CcC
Confidence            89999999999999876 8899999999999999999999999976541      11223455 67888653211  123


Q ss_pred             eeeeEEEEeecCeeeccc--c--------ceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-C
Q psy15989        179 RGIVSITVARDGLRVCDT--K--------HYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-T  245 (363)
Q Consensus       179 ~~l~~~~~~~~~~~~C~~--~--------~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~  245 (363)
                      ..|+...+++++...|..  .        +.|....  ..+.|.|||||||++.  +.|+|+||+|++     ...|. .
T Consensus       136 ~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~~~~l~Gi~S~g-----~~~C~~~  208 (240)
T 2zgc_A          136 RVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLVCG--KGRVLAGVLSFS-----SRVCTDI  208 (240)
T ss_dssp             SBCEEEEEEECCHHHHTSTTTTTTCCCTTEEEEECSSTTCBCCTTCTTCEEEET--TTTEEEEEECCC-----CSSTTCT
T ss_pred             ceeeeeeeeecCHHHhCCccccCCCCCCceEeeccCCCCCccCCCCccCeeEEC--CCCEEEEEEEEC-----CCCCCCC
Confidence            457788889999999975  2        2344432  4688999999999985  458999999993     23465 3


Q ss_pred             CcceEEEeeeEE
Q psy15989        246 KHYVVFTDVKRV  257 (363)
Q Consensus       246 ~~~~v~~~V~~i  257 (363)
                      ..+.+|++|..+
T Consensus       209 ~~p~vyt~V~~y  220 (240)
T 2zgc_A          209 FKPPVATAVAPY  220 (240)
T ss_dssp             TSCCEEEESGGG
T ss_pred             CCCcEEEEHHHh
Confidence            568999998763

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=8.8e-42  Score=299.25  Aligned_cols=218  Identities=26%  Similarity=0.409  Sum_probs=167.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCC-ceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCc
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGI-NLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV   98 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~-~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~   98 (363)
                      |+||++|.+++|||||+|+..... ...++||||||+++||||||||+.+..     ....+.|++|.+++....  ...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~-----~~~~~~v~~g~~~~~~~~--~~~   73 (247)
T 3mhw_U            1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP-----KKEDYIVYLGRSRLNSNT--QGE   73 (247)
T ss_dssp             CBSSEECCGGGSTTEEEEEEECTTSCEEEEEEEEEEETTEEEECGGGTTTSC-----CGGGEEEEESCCBSSSCC--TTC
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCCccceEEEEEEEeCCEEEEcHHhCcCCC-----CCccEEEEeccccccCCC--CCC
Confidence            789999999999999999876432 237899999999999999999997532     345799999999887654  567


Q ss_pred             eeeeeeEEEECCCCCCCC--CCCCeEEEEeCCc----ccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEe
Q psy15989         99 QNKQVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKI  172 (363)
Q Consensus        99 ~~~~V~~i~~hp~y~~~~--~~nDIALl~L~~~----~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~  172 (363)
                      +.+.|+++++||+|+..+  ..||||||+|++|    +.+++.++|||||.....      ......|. .+|||.....
T Consensus        74 ~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~------~~~~~~~~-v~GwG~~~~~  146 (247)
T 3mhw_U           74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYND------PQFGTSCE-ITGFGKENST  146 (247)
T ss_dssp             EEEEEEEEEECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCC------CCTTCEEE-EEESCCSSTT
T ss_pred             EEEEEEEEEECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCC------CCCCCEEE-EEecCCcCCC
Confidence            889999999999998766  5799999999999    889999999999975431      11123454 6778754322


Q ss_pred             cCeeEEeeeeEEEEeecCeeecccc----------ceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcc
Q psy15989        173 DSAWYLRGIVSITVARDGLRVCDTK----------HYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGL  240 (363)
Q Consensus       173 ~~~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~  240 (363)
                      +. .....++...+.+.+...|...          +.|....  ..+.|.|||||||++..+++|+|+||+|++     .
T Consensus       147 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~l~Gi~S~g-----~  220 (247)
T 3mhw_U          147 DY-LYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWG-----R  220 (247)
T ss_dssp             CS-SCCSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEEC-----S
T ss_pred             Cc-ccchhheeeEEEEEChHHhcCccccCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEECCCEEEEEEEEEC-----C
Confidence            11 1234566777888888889742          2344432  468999999999999999999999999994     3


Q ss_pred             eecCCCcceEEEeeeEE
Q psy15989        241 RVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       241 ~~c~~~~~~v~~~V~~i  257 (363)
                      .++....+.+|++|..+
T Consensus       221 ~c~~~~~p~vyt~V~~~  237 (247)
T 3mhw_U          221 GCALKDKPGVYTRVSHF  237 (247)
T ss_dssp             SSSBTTBCEEEEEGGGC
T ss_pred             CCCCCCCCeEEEEHHHH
Confidence            33335678999998753

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=9.7e-42  Score=299.69  Aligned_cols=215  Identities=26%  Similarity=0.465  Sum_probs=166.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCC--------CcccCCcEEEEeceecccc
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYD--------KPVDSDTLVIYLGKYHQHQ   91 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~--------~~~~~~~~~V~~G~~~~~~   91 (363)
                      |+||++|.+++|||+|+|+...+   .++||||||+++||||||||+......        ....+..+.|++|.+++..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~   77 (251)
T 3gov_B            1 IFNGRPAQKGTTPWIAMLSHLNG---QPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLR   77 (251)
T ss_dssp             CBTCEECCTTSCTTEEEEEETTC---CEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSS
T ss_pred             CCCCEECCCCCcCeEEEEeccCC---CeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecceeccC
Confidence            78999999999999999976432   689999999999999999999753110        0124568999999998754


Q ss_pred             cCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEE
Q psy15989         92 FSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFK  171 (363)
Q Consensus        92 ~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~  171 (363)
                      ..  ...+.+.|+++++||+|+..+..||||||+|++|+.|+++++|||||.....       .+ ..|. .+|||....
T Consensus        78 ~~--~~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~~-------~~-~~~~-v~GwG~~~~  146 (251)
T 3gov_B           78 SD--ENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQ-------EG-AMVI-VSGWGKQFL  146 (251)
T ss_dssp             CC--SSCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCCC-------TT-CEEE-EEECSCCTT
T ss_pred             CC--CcceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCCC-------CC-CEEE-EEcCCCCCC
Confidence            43  5678899999999999999999999999999999999999999999977651       12 2444 577775432


Q ss_pred             ecCeeEEeeeeEEEEeecCeeeccccc-----------eEEec--CCCccCcccccceeEEE--EcCccEEEEEEEEEEe
Q psy15989        172 IDSAWYLRGIVSITVARDGLRVCDTKH-----------YVVFT--DVANVCNGDSGGGMVFK--IDSAWYLRGIVSITVA  236 (363)
Q Consensus       172 ~~~~~~~~~l~~~~~~~~~~~~C~~~~-----------~~~~~--~~~~~C~gdsGgpl~~~--~~~~~~l~Gi~s~~~~  236 (363)
                      ..   ....|+...+++++...|...+           .|...  ...+.|.|||||||++.  .+++|+|+||+|++  
T Consensus       147 ~~---~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g--  221 (251)
T 3gov_B          147 QR---FPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWG--  221 (251)
T ss_dssp             SC---CCSBCEEEEEEEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEEC--
T ss_pred             CC---CCccceEEeeEEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEEC--
Confidence            11   2345778888888888896422           34432  24689999999999998  46889999999994  


Q ss_pred             cCcceecCCCcceEEEeeeE
Q psy15989        237 RDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       237 ~~g~~~c~~~~~~v~~~V~~  256 (363)
                         ..++....+.+|++|..
T Consensus       222 ---~~C~~~~~p~vyt~V~~  238 (251)
T 3gov_B          222 ---DDCGKKDRYGVYSYIHH  238 (251)
T ss_dssp             ---SSSSCSSCCEEEEETTT
T ss_pred             ---CCCCCCCCCEEEEEHHH
Confidence               33333466899999864

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=1.4e-41  Score=295.41  Aligned_cols=204  Identities=23%  Similarity=0.385  Sum_probs=160.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+..+    .++||||||+++||||||||+..         ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~~---------~~~~v~~G~~~~~~~~--~~~~   65 (234)
T 1orf_A            1 IIGGNEVTPHSRPYMVLLSLDR----KTICAGALIAKDWVLTAAHCNLN---------KRSQVILGAHSITREE--PTKQ   65 (234)
T ss_dssp             CBSCEECCTTSSTTEEEEECSS----SCEEEEEEEETTEEEECTTCCCC---------TTCEEEESCSBSSSCC--TTCE
T ss_pred             CCCCEECCCCCCCeEEEEccCC----ceEEEEEEeeCCEEEEchhcCCC---------CCceEEEeccccCcCC--CceE
Confidence            7999999999999999998643    68999999999999999999863         3468999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|+++++|||||.....      ......|. .+|||.+...+.  ...
T Consensus        66 ~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~  136 (234)
T 1orf_A           66 IMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDD------VKPGTMCQ-VAGWGRTHNSAS--WSD  136 (234)
T ss_dssp             EECEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCC------CCTTCEEE-EEESSCSSSSSC--CCS
T ss_pred             EEEEEEEEcCCCCCCCCCCCCEEEEEECCcCccCCCeeeeecCCCcCC------CCCCCEEE-EEECCcCCCCCC--ccc
Confidence            899999999999999899999999999999999999999999976541      11123454 678886532211  234


Q ss_pred             eeeEEEEeecCeeeccc------------cceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCC
Q psy15989        180 GIVSITVARDGLRVCDT------------KHYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT  245 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~------------~~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~  245 (363)
                      .|+...+++++...|..            .+.|...  ...+.|.|||||||++..    +|+||+|++.    ...|..
T Consensus       137 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~----~~~C~~  208 (234)
T 1orf_A          137 TLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG----VFRGVTSFGL----ENKCGD  208 (234)
T ss_dssp             BCEEEEEEEECHHHHTSTTTTTTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT----EEEEEEEECC----TTCTTC
T ss_pred             cceEeEEEeeCHHHcCCccccccCCccCCCEEEecCCCCCCcCCCCCCCCeEEECC----EEEEEEEEcC----CCCCCC
Confidence            57778888889999972            3345543  457899999999999843    8999999942    124654


Q ss_pred             -CcceEEEeee
Q psy15989        246 -KHYVVFTDVK  255 (363)
Q Consensus       246 -~~~~v~~~V~  255 (363)
                       ..+.+|++|.
T Consensus       209 ~~~p~vyt~v~  219 (234)
T 1orf_A          209 PRGPGVYILLS  219 (234)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCCCEEEEch
Confidence             6789999987

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=5.6e-42  Score=296.58  Aligned_cols=204  Identities=27%  Similarity=0.431  Sum_probs=160.9

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...   ..++||||||+++||||||||+..        ...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---~~~~CgGtLI~~~~VLTAAHC~~~--------~~~~~V~~G~~~~~~~~--~~~~   67 (228)
T 1fxy_A            1 IVGGYNCKDGEVPWQALLINEE---NEGFCGGTILSEFYILTAAHCLYQ--------AKRFKVRVGDRNTEQEE--GGEA   67 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT---SCEEEEEEECSSSEEEECGGGTTS--------CSSCEEEEECSCTTTCC--CCEE
T ss_pred             CCCCEECCCCCcCcEEEEEcCC---CCeeEEEEEeeCCEEEECHHHCCC--------CCcEEEEECccCccccC--CCcE
Confidence            7899999999999999997542   268999999999999999999953        25688999998876543  5568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|+++|+|||||....       ..+ ..|. .+|||.+...+. ....
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-------~~~-~~~~-v~GwG~~~~~~~-~~~~  137 (228)
T 1fxy_A           68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPP-------ATG-TKCL-ISGWGNTASSGA-DYPD  137 (228)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTT-CEEE-EEESSCCCSSSC-CCCS
T ss_pred             EEEEEEEEECCCCCCCCCcCcEEEEEECCcccCCCceeccCCCCCCC-------CCC-CEEE-EEecCccCCCCC-CCCc
Confidence            89999999999999989999999999999999999999999997654       112 2454 678886533221 1234


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcc
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~  248 (363)
                      .|+...+++++...|...        +.|..  ....+.|.|||||||++..    +|+||+|++     . .|. ...+
T Consensus       138 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g-----~-~C~~~~~p  207 (228)
T 1fxy_A          138 ELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNG----QLQGVVSWG-----D-GCAQKNKP  207 (228)
T ss_dssp             SCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEEEEEEEC-----S-SSSBTTBC
T ss_pred             cceEEEEEEeCHHHhHhhcCCCCCCCEEEeccCCCCCccccCccccceEECC----EEEEEEEEC-----C-CCCCCCCC
Confidence            577788889999899642        23443  2356899999999999853    899999994     3 354 5678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       208 ~vyt~V~~  215 (228)
T 1fxy_A          208 GVYTKVYN  215 (228)
T ss_dssp             EEEEEGGG
T ss_pred             EEEEEhHH
Confidence            99999875

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=4.5e-42  Score=336.68  Aligned_cols=230  Identities=27%  Similarity=0.441  Sum_probs=169.9

Q ss_pred             CcCCCCCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEE
Q psy15989          2 CYRDVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLV   81 (363)
Q Consensus         2 ~~~~~~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~   81 (363)
                      |.....||..    ...||+||.+|.+++|||||+|+.... ...++||||||+++||||||||+....     .+..+.
T Consensus       374 C~~~~~Cg~~----~~~rIvgG~~a~~~~~Pw~v~L~~~~~-~~~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~~~~  443 (625)
T 2f83_A          374 CKMDNECTTK----IKPRIVGGTASVRGEWPWQVTLHTTSP-TQRHLCGGSIIGNQWILTAAHCFYGVE-----SPKILR  443 (625)
T ss_dssp             GGGSCSSCSC----CCSCCCSSSSCCTTSSTTEEEEEECSS-SSEEEEEEEECSSSEEEECGGGGSSCC-----CGGGEE
T ss_pred             cccccccCCC----CCCceECCEECCCCCCCeEEEEEEecC-CCcEEEEEEEECCCEEEEcHHhCCCCC-----CCceEE
Confidence            5566789975    468999999999999999999986532 237899999999999999999997532     345789


Q ss_pred             EEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeec
Q psy15989         82 IYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCN  161 (363)
Q Consensus        82 V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~  161 (363)
                      |++|.+++....  ...+.+.|++|++||+|+..+..||||||+|++|+.|+++|+|||||......     . ....|.
T Consensus       444 V~~G~~~~~~~~--~~~~~~~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~-----~-~~~~~~  515 (625)
T 2f83_A          444 VYSGILNQSEIK--EDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRN-----V-IYTDCW  515 (625)
T ss_dssp             EEESCSBGGGCC--SSCCCEEEEEEEECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTT-----C-CCCCEE
T ss_pred             EEEEeccCCCCC--CCceEEeEEEEEECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccCCc-----c-CCCEEE
Confidence            999998876543  34567899999999999998899999999999999999999999999754311     1 122455


Q ss_pred             CCCCccceEEecCeeEEeeeeEEEEeecCeeeccccce---------EEe--cCCCccCcccccceeEEEEcCccEEEEE
Q psy15989        162 GDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY---------VVF--TDVANVCNGDSGGGMVFKIDSAWYLRGI  230 (363)
Q Consensus       162 g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~---------~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi  230 (363)
                       .+|||.....+.  ....|+...+++++...|...+.         ++.  ....+.|.|||||||++..+++|+|+||
T Consensus       516 -v~GWG~~~~~~~--~s~~L~~~~v~i~~~~~C~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~lvGI  592 (625)
T 2f83_A          516 -VTGWGYRKLRDK--IQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGI  592 (625)
T ss_dssp             -ECBCC------C--CCSBCBCCEECCCCHHHHHTTCTTSCCCTTBCCC----------CCCTTCEEEEEETTEEEEEEE
T ss_pred             -EEEecCCCCCCc--CCcccEEEEEEEcCHHHHHHHhccCCCCCCeEEeecCCCCCcCCCCCcccceEEEECCeEEEEEE
Confidence             789997654322  23457788889999999975431         222  2246899999999999998999999999


Q ss_pred             EEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        231 VSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       231 ~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      +|++     ..++....+.+|++|..+
T Consensus       593 vS~G-----~~C~~~~~P~vyT~V~~y  614 (625)
T 2f83_A          593 TSWG-----EGCAQRERPGVYTNVVEY  614 (625)
T ss_dssp             EEEC-----CC----CCCCEEEEGGGG
T ss_pred             EEeC-----CCCCCCCCCeEEEEHHHH
Confidence            9994     333234678999998753

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=8.3e-42  Score=295.69  Aligned_cols=207  Identities=24%  Similarity=0.377  Sum_probs=161.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..+    .++||||||+++||||||||+...      ....+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~~~------~~~~~~v~~G~~~~~~~~--~~~~   68 (228)
T 2xw9_A            1 ILGGREAEAHARPYMASVQLNG----AHLCGGVLVAEQWVLSAAHCLEDA------ADGKVQVLLGAHSLSQPE--PSKR   68 (228)
T ss_dssp             CBCC-CCCTTSCTTEEEEEETT----EEEEEEEEEETTEEEECGGGGSSC------TTCCEEEEESCSBSSSCC--TTCE
T ss_pred             CCCCeECCCCCCCcEEEEEECC----CeEEEEEEEeCCEEEEcHHhCCCC------CCCceEEEEcccccCCCC--Ccce
Confidence            7899999999999999998643    789999999999999999999642      345789999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|.++++||+|+..+..||||||+|++|+.|++.++|||||.....      ......|. .+|||.....+.  ...
T Consensus        69 ~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~------~~~g~~~~-v~GwG~~~~~~~--~~~  139 (228)
T 2xw9_A           69 LYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRD------VAPGTLCD-VAGWGIVNHAGR--RPD  139 (228)
T ss_dssp             EEEEEEEEECTTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCC------CCTTC-CE-EEESSCCSTTCC--CCS
T ss_pred             EEEEEEEEeCCCCCCCCCCCcEEEEEeCCCcccCCCeeecccCCcccC------CCCCCEEE-EEEecccCCCCC--CCc
Confidence            899999999999999999999999999999999999999999975431      11122444 678876532211  234


Q ss_pred             eeeEEEEeecCeeeccccc----------eEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCC-Ccc
Q psy15989        180 GIVSITVARDGLRVCDTKH----------YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT-KHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~----------~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~-~~~  248 (363)
                      .|+...+++++...|...+          .|......+.|.|||||||++..    +|+||+|+     +...|.. ..+
T Consensus       140 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~C~GDsGgPL~~~~----~l~Gi~s~-----g~~~C~~~~~p  210 (228)
T 2xw9_A          140 SLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDAGGPLVCGG----VLEGVVTS-----GSRVCGNRKKP  210 (228)
T ss_dssp             BCEEEECCEECHHHHTSTTTTTTCCCTTEEEECCSSCBCCTTCTTCEEEETT----EEEEEECC-----SCCCSSCTTSC
T ss_pred             hheEEEEEEcChhHhcCccccCCcccCCEEecCCCCCccCCCCCcccEEECC----EEEEEEee-----cCCcCCCCCCC
Confidence            5677788888888896432          34544567899999999999843    89999998     4335654 678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       211 ~vyt~V~~  218 (228)
T 2xw9_A          211 GIYTRVAS  218 (228)
T ss_dssp             EEEEEGGG
T ss_pred             cEEEEHHH
Confidence            99999865

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=1.8e-41  Score=293.27  Aligned_cols=203  Identities=25%  Similarity=0.327  Sum_probs=159.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..... ..++||||||+++||||||||+..          .+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~-~~~~CgGtLI~~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~--~~~~   67 (227)
T 1iau_A            1 IIGGHEAKPHSRPYMAYLMIWDQK-SLKRCGGFLIRDDFVLTAAHCWGS----------SINVTLGAHNIKEQE--PTQQ   67 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSS-CEEEEEEEEEETTEEEECGGGCCS----------EEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCeECCCCCcCcEEEEEEECCC-CceEEEEEEEcCCEEEECHHhCCC----------ceEEEEccccccCCC--CccE
Confidence            789999999999999999765322 258999999999999999999852          488999999876543  5578


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....      ......|. .+|||.....+.  ...
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~------~~~g~~~~-v~GwG~~~~~~~--~~~  138 (227)
T 1iau_A           68 FIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQ------VKPGQTCS-VAGWGQTAPLGK--HSH  138 (227)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCC------CCTTCEEE-EEESSCSSSSSC--CCS
T ss_pred             EEEEEEEECCCCCCCCCCCCCeEEEEECCcccCCCceecccCCCCCCC------CCCCCEEE-EEEcccCCCCCC--cCc
Confidence            899999999999999899999999999999999999999999976541      11123455 678886532111  234


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCc
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKH  247 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~  247 (363)
                      .|+...+++.+...|...         +.|....  ..+.|.|||||||++..    +|+||+|++        |. ...
T Consensus       139 ~L~~~~~~i~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g--------c~~~~~  206 (227)
T 1iau_A          139 TLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK----VAQGIVSYG--------RNNGMP  206 (227)
T ss_dssp             BCEEEEEEBCCHHHHHHHTTTTCCTTTEEEESCTTSCCBCCTTCTTSEEEETT----EEEEEEEEE--------CTTSCS
T ss_pred             eeeEeeeeeechHHhhhHhccccCCCcEEEeECCCCCCeeeecCCCchheEee----EEEEEEeEe--------cCCCCC
Confidence            577888899999999632         3344332  46899999999999943    899999993        43 346


Q ss_pred             ceEEEeeeE
Q psy15989        248 YVVFTDVKR  256 (363)
Q Consensus       248 ~~v~~~V~~  256 (363)
                      +.+|++|..
T Consensus       207 p~vyt~v~~  215 (227)
T 1iau_A          207 PRACTKVSS  215 (227)
T ss_dssp             CEEEEEGGG
T ss_pred             CeEEEEHHH
Confidence            899999865

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=1e-41  Score=300.97  Aligned_cols=225  Identities=29%  Similarity=0.484  Sum_probs=164.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+....  ..++||||||+++||||||||+.............+.|++|.++..... ....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~--~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~-~~~~~   77 (259)
T 3rm2_H            1 IVEGSDAEIGMSPWQVMLFRKSP--QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYE-RNIEK   77 (259)
T ss_dssp             CBSCEECCTTSSTTEEEEEEETT--EEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCC-TTTCE
T ss_pred             CCCCEECCCCCcCCEEEEEECCC--CceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECcccccccc-cCcce
Confidence            79999999999999999976532  3789999999999999999999643222223456899999999876543 13345


Q ss_pred             eeeeeEEEECCCCC-CCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC----
Q psy15989        100 NKQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS----  174 (363)
Q Consensus       100 ~~~V~~i~~hp~y~-~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~----  174 (363)
                      ...|+++++||+|+ ..+..||||||+|++|+.|+++|+|||||.......   .......|. .+|||.......    
T Consensus        78 ~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~---~~~~g~~~~-v~GwG~~~~~~~~~~~  153 (259)
T 3rm2_H           78 ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAAS---LLQAGYKGR-VTGWGNLKETWTANVG  153 (259)
T ss_dssp             EEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHH---HCCTTCEEE-EEESCCSSCC------
T ss_pred             eeEEEEEEECCCCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCcccccc---ccCCCCEEE-EeecCCCcCcCCcccc
Confidence            66699999999998 567889999999999999999999999986543000   000112344 577775432100    


Q ss_pred             eeEEeeeeEEEEeecCeeecccc--------ceEEec-----CCCccCcccccceeEEEE--cCccEEEEEEEEEEecCc
Q psy15989        175 AWYLRGIVSITVARDGLRVCDTK--------HYVVFT-----DVANVCNGDSGGGMVFKI--DSAWYLRGIVSITVARDG  239 (363)
Q Consensus       175 ~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~~-----~~~~~C~gdsGgpl~~~~--~~~~~l~Gi~s~~~~~~g  239 (363)
                      ......|+...+++++...|...        +.|...     ...+.|.|||||||++..  +++|+|+||+|++     
T Consensus       154 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g-----  228 (259)
T 3rm2_H          154 KGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWG-----  228 (259)
T ss_dssp             -CCCSBCEEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEEC-----
T ss_pred             ccccccceEEEEEEeCHHHhhhhhcccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEEC-----
Confidence            01134577888888999899643        234431     224899999999999987  8899999999994     


Q ss_pred             ceecCCCcceEEEeeeE
Q psy15989        240 LRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       240 ~~~c~~~~~~v~~~V~~  256 (363)
                      ..++....+.+|++|..
T Consensus       229 ~~C~~~~~p~vyt~V~~  245 (259)
T 3rm2_H          229 EGCDRDGKYGFYTHVFR  245 (259)
T ss_dssp             SSSSCTTCCEEEEETGG
T ss_pred             CCCCCCCCCeEEEEHHH
Confidence            33333457899999865

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=1.8e-41  Score=292.66  Aligned_cols=203  Identities=26%  Similarity=0.308  Sum_probs=159.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..... ..++||||||+++||||||||+..          .+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~-~~~~CgGsLI~~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~--~~~~   67 (224)
T 1cgh_A            1 IIGGRESRPHSRPYMAYLQIQSPA-GQSRCGGFLVREDFVLTAAHCWGS----------NINVTLGAHNIQRRE--NTQQ   67 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESTTT-TSCEEEEEEEETTEEEECGGGCCS----------SEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEECCC-CCeEEEEEEeeCCEEEEhHHhCCC----------CCEEEEeecccCCCC--CccE
Confidence            789999999999999999875322 258999999999999999999853          488999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....      ......|. .+|||.+.. +  ....
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~-~--~~~~  137 (224)
T 1cgh_A           68 HITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEG------LRPGTLCT-VAGWGRVSM-R--RGTD  137 (224)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTCC------CCTTCEEE-EEESCCSSS-S--CCCS
T ss_pred             EEEEEEEEcCCCCCCCCCcCCEEEEEECCCCcCCCceEeeECCCCCCC------CCCCCEEE-EEECCcCCC-C--CCCC
Confidence            899999999999999899999999999999999999999999976541      11123454 678876531 1  1234


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .|+...+++.+...|...        +.|....  ..+.|.|||||||++..    +|+||+|++     .  |....+.
T Consensus       138 ~l~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g-----~--~~~~~p~  206 (224)
T 1cgh_A          138 TLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNN----VAHGIVSYG-----K--SSGVPPE  206 (224)
T ss_dssp             BCEEEEEEBCCHHHHHHHCTTCCTTTEEEECCTTSCCBCCTTCTTCEEEETT----EEEEEEEEC-----C--TTCCSCE
T ss_pred             cceEEEEEeeCHHHHHHHhCcCCCcceEeeccCCCCCeEeeCCCccceEEcc----EEEEEEEEE-----C--CCCCCCe
Confidence            567788888898899632        3454432  46899999999999843    899999994     2  4455689


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       207 vyt~V~~  213 (224)
T 1cgh_A          207 VFTRVSS  213 (224)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            9999865

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=1.5e-41  Score=292.83  Aligned_cols=201  Identities=26%  Similarity=0.417  Sum_probs=159.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+.+          .+.|++|.+++.... +...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGsLIs~~~VLTAAHC~~~----------~~~v~~g~~~~~~~~-~~~~~   65 (223)
T 2bdg_A            1 IINGEDCSPHSQPWQAALVMEN----ELFCSGVLVHPQWVLSAAHCFQN----------SYTIGLGLHSLEADQ-EPGSQ   65 (223)
T ss_dssp             CBTCEECCTTSSTTEEEEECSS----CEEEEEEEEETTEEEECGGGCCS----------SEEEEESCSBSCGGG-CTTCE
T ss_pred             CCCCEECCCCCCCcEEEEeeCC----CEEEEEEEecCCEEEEhHHhCCC----------CeEEEEeeeecCCCC-CCCcE
Confidence            7899999999999999998643    68999999999999999999852          478999998775432 24567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||....       ..+ ..|. .+|||.+...   ....
T Consensus        66 ~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-------~~~-~~~~-v~GwG~~~~~---~~~~  133 (223)
T 2bdg_A           66 MVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCP-------TAG-NSCL-VSGWGLLANG---RMPT  133 (223)
T ss_dssp             EEEEEEEEECTTTTSSTTCSCCEEEEESSCCCCCSSCCCCCBCSSCC-------CTT-CEEE-EEESCCCTTS---CCCS
T ss_pred             EEEEEEEEeCCCCCCCCCcCcEEEEEECCcccCCCceecccCCCCCC-------CCC-CEEE-EEeCcccCCC---CCCC
Confidence            89999999999999988999999999999999999999999987654       112 2454 6788764321   1234


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcc
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~  248 (363)
                      .|+...+++++.+.|...        +.|...  ...+.|.|||||||++..    +|+||+|++     ...|. ...+
T Consensus       134 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~Gi~S~g-----~~~C~~~~~p  204 (223)
T 2bdg_A          134 VLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLICNG----YLQGLVSFG-----KAPCGQVGVP  204 (223)
T ss_dssp             BCEEEEEEBCCHHHHHHHSTTTCCTTEEEECCSTTCCBCCTTCTTCEEEETT----EEEEEEEEC-----CSSTTCTTCC
T ss_pred             cceEEEEEEeCHHHhhhhhCCCCCCCeEeccCCCCCCCcCCCCCCchheEcc----EEEEEEEec-----CCCCCCCCCC
Confidence            577888889999999742        245442  456899999999999853    899999994     33465 4678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       205 ~vyt~V~~  212 (223)
T 2bdg_A          205 GVYTNLCK  212 (223)
T ss_dssp             EEEECGGG
T ss_pred             cEEEEHHH
Confidence            99999865

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=2.3e-41  Score=291.62  Aligned_cols=200  Identities=28%  Similarity=0.420  Sum_probs=158.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..+    .++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~----------~~~~v~~G~~~~~~~~--~~~~   64 (223)
T 1lo6_A            1 LVHGGPCDKTSHPYQAALYTSG----HLLCGGVLIHPLWVLTAAHCKK----------PNLQVFLGKHNLRQRE--SSQE   64 (223)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEEEETTEEEECGGGCC----------TTCEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEecCC----CEEEEeEEecCCEEEECccCCC----------CCeEEEEcceecCCCC--CCcE
Confidence            7899999999999999997532    7899999999999999999985          2478999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|.++++||+|+..+..||||||+|++|+.|++.++|||||.....       .+ ..|. ..|||... .+  ....
T Consensus        65 ~~~v~~i~~Hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~-------~~-~~~~-v~GwG~~~-~~--~~~~  132 (223)
T 1lo6_A           65 QSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSA-------NT-TSCH-ILGWGKTA-DG--DFPD  132 (223)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTTC-------CC-CEEE-EEESSCCT-TS--SCCS
T ss_pred             EEEEEEEEECCCCCCCCCcCeEEEEEECCcccCCCceeecccCCCCCC-------CC-CEEE-EEEECCCC-CC--CcCc
Confidence            899999999999999899999999999999999999999999976541       12 2444 67887653 11  1234


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcc
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~  248 (363)
                      .|+...+++++...|...        +.|...  ...+.|.|||||||++..    .|+||+|++     ...|. ...+
T Consensus       133 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~Gi~S~g-----~~~C~~~~~p  203 (223)
T 1lo6_A          133 TIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWG-----NIPCGSKEKP  203 (223)
T ss_dssp             BCEEEEEEEECHHHHHHHSTTTCCTTEEEEECTTTCCBCCTTTTTCEEEETT----EEEEEEEEC-----CSSCCCSSSC
T ss_pred             eeeEEEEEEeCHHHhhhhhCCCCCCCeEEeecCCCCCeeccccCCCcEEeCC----EEEEEEeeC-----CCCCCCCCCC
Confidence            567778888888889642        345543  357899999999999853    799999994     23465 4678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       204 ~vyt~V~~  211 (223)
T 1lo6_A          204 GVYTNVCR  211 (223)
T ss_dssp             EEEEEGGG
T ss_pred             cEEEEHHH
Confidence            99999875

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=8e-42  Score=298.06  Aligned_cols=212  Identities=26%  Similarity=0.438  Sum_probs=156.7

Q ss_pred             cCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCc--e
Q psy15989         22 YGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV--Q   99 (363)
Q Consensus        22 gG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~--~   99 (363)
                      ||.+|.+++|||||+|+........++||||||+++||||||||+..        ...+.|++|.+++....  ...  +
T Consensus         1 gG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAhC~~~--------~~~~~v~~G~~~~~~~~--~~~~~~   70 (240)
T 1fon_A            1 NGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST--------SRTYQVVLGEYDRSVLE--GSEQVI   70 (240)
T ss_dssp             --------CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCT--------TSCEEEEEEEEETTEEE--EEEEEE
T ss_pred             CCccCCcCCcccEEEEEEecCCcEeeEEEEEEeeCCEEEECHHHCCC--------CCceEEEeeeeeccccC--CCceeE
Confidence            78999999999999998754333469999999999999999999964        35689999999876432  223  6


Q ss_pred             eeeeeEEEECCCCCCCCCC--CCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~--nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.|+++++||+|+..+..  ||||||+|++|+.|++.|+|||||.....      ......|. .+|||.....+.  .
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~--~  141 (240)
T 1fon_A           71 PINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDI------LPNEAPCY-ISGWGRLYTGGP--L  141 (240)
T ss_dssp             EECTTSEEECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCC------CCTTCCCE-EEECTTCCCSSS--C
T ss_pred             eeeeeEEEECCCCcCCCccCCCCEEEEEecCccccCCcccccCCCCcccC------CCCCCeEE-EEEEeEcCCCCC--C
Confidence            7889999999999988777  99999999999999999999999976541      11123444 678886543221  2


Q ss_pred             EeeeeEEEEeecCeeecccc----------ceEEecCCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecC-C
Q psy15989        178 LRGIVSITVARDGLRVCDTK----------HYVVFTDVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCD-T  245 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~----------~~~~~~~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~-~  245 (363)
                      ...|+...+++++...|...          +.|......+.|.|||||||++.. +++|+|+||+|++.    ...|. .
T Consensus       142 ~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~----~~~C~~~  217 (240)
T 1fon_A          142 PDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVS----AFGCNTI  217 (240)
T ss_dssp             CSBCEEEECCEECHHHHTSTTTTGGGCCTTEEEECCSSSCSTTSCTTCEEEEECSSSCEEEEEEEEECC----TTCSSBT
T ss_pred             ChhheEEEEeeeCHHHhccceecCCccccceEeecCCCCcccCCCCCCeEEeEcCCCCEEEEEEEEEcC----CCCCCCC
Confidence            34567788888888889742          234444447899999999999987 78899999999942    12465 4


Q ss_pred             CcceEEEeeeE
Q psy15989        246 KHYVVFTDVKR  256 (363)
Q Consensus       246 ~~~~v~~~V~~  256 (363)
                      ..+.+|++|..
T Consensus       218 ~~p~vyt~V~~  228 (240)
T 1fon_A          218 KKPTVFTRVSA  228 (240)
T ss_dssp             TBCEEEEEGGG
T ss_pred             CCCcEEEEhHH
Confidence            67899999875

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=2.8e-41  Score=294.86  Aligned_cols=216  Identities=24%  Similarity=0.407  Sum_probs=165.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+...+ ...++||||||+++||||||||+...      .+..+.|++|.+++...   ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-~~~~~CgGtLIs~~~VLTAAHC~~~~------~~~~~~v~~G~~~~~~~---~~~~   70 (241)
T 1m9u_A            1 VIGGTNASPGEFPWQLSQQRQSG-SWSHSCGASLLSSTSALSASHCVDGV------LPNNIRVIAGLWQQSDT---SGTQ   70 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESS-SEEEEEEEEECSSSEEEECHHHHTTC------CGGGEEEEESCSBTTCC---TTCE
T ss_pred             CCCCeECCCCCcCeEEEEEecCC-ceeeeeEEEEEeCCEEEecHHhCCCC------CcceEEEEEEeecCCCC---CCce
Confidence            78999999999999999987643 34689999999999999999999652      35679999999887642   4468


Q ss_pred             eeeeeEEEECCCC--CCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTF--NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y--~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.|+++++||+|  +..+..||||||+|++|+.|++.|+|||||......     ..+ ..|. .+|||.....+.  .
T Consensus        71 ~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~-----~~~-~~~~-v~GwG~~~~~~~--~  141 (241)
T 1m9u_A           71 TANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNND-----YAG-TTCV-ISGWGRTDGTNN--L  141 (241)
T ss_dssp             EEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCC-----CTT-CEEE-EEESSCSSSSSC--C
T ss_pred             EEEEEEEEeCCCcCCCCCcccccEEEEEecCccccCCCccccCcCCCcCCC-----CCC-CEEE-EEeCcccCCCCC--c
Confidence            8999999999999  777789999999999999999999999999762211     112 3454 678876532211  2


Q ss_pred             EeeeeEEEEeecCeeeccccc------------eEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceec
Q psy15989        178 LRGIVSITVARDGLRVCDTKH------------YVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC  243 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~~------------~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c  243 (363)
                      ...|+...+++++...|...+            .|...  ...+.|.|||||||++.. ++|+|+||+|+.+.. +..++
T Consensus       142 ~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~l~Gi~S~~~~~-g~~C~  219 (241)
T 1m9u_A          142 PDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSS-GLGAC  219 (241)
T ss_dssp             CSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSEEEEEEEEECCBC-TTSCB
T ss_pred             ccceeEeeEEEEcHHHhhhhhcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeC-CCEEEEEEEEEeccC-CCCcc
Confidence            345778888889988996421            23332  246899999999999975 889999999993311 22333


Q ss_pred             CCCcceEEEeeeE
Q psy15989        244 DTKHYVVFTDVKR  256 (363)
Q Consensus       244 ~~~~~~v~~~V~~  256 (363)
                      ....+.+|++|..
T Consensus       220 ~~~~p~vyt~V~~  232 (241)
T 1m9u_A          220 LPDYPSVYTRVSA  232 (241)
T ss_dssp             CTTSCEEEEEGGG
T ss_pred             CCCCCEEEEEhHH
Confidence            4467899999875

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=1.8e-41  Score=292.15  Aligned_cols=199  Identities=28%  Similarity=0.406  Sum_probs=157.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+. +    .++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~----~~~CgGsLIs~~~VLTAAHC~~----------~~~~v~~G~~~~~~~~--~~~~   63 (222)
T 1hj8_A            1 IVGGYECKAYSQPHQVSLNS-G----YHFCGGSLVNENWVVSAAHCYK----------SRVEVRLGEHNIKVTE--GSEQ   63 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEES-S----SEEEEEEEEETTEEEECGGGCC----------SSCEEEESCSBTTSCC--SCCE
T ss_pred             CCCCEECCCCCCCEEEEEEc-C----CcEEEeEEecCCEEEECHHhcC----------CCeEEEEcccccccCC--CCcE
Confidence            78999999999999999963 1    6899999999999999999985          2468999999876443  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||....       ..+ ..|. .+|||.+...+.  ...
T Consensus        64 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~-~~~~-v~GwG~~~~~~~--~~~  132 (222)
T 1hj8_A           64 FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCA-------PAG-TMCT-VSGWGNTMSSTA--DSN  132 (222)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSCC-------CTT-CEEE-EEESSCCCCSSC--CTT
T ss_pred             EEEEEEEEECCCCCCCCCCCcEEEEEECCcccCCCceeccCCCCCCC-------CCC-CEEE-EEECCCCCCCCC--CCc
Confidence            89999999999999988999999999999999999999999997654       112 2454 678886533211  123


Q ss_pred             eeeEEEEeecCeeeccccc--------eEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcc
Q psy15989        180 GIVSITVARDGLRVCDTKH--------YVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~--------~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~  248 (363)
                      .|+...+++++...|...+        .|..  ....+.|.|||||||++..    .|+||+|++     . .|. ...+
T Consensus       133 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g-----~-~C~~~~~p  202 (222)
T 1hj8_A          133 KLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWG-----Y-GCAEPGNP  202 (222)
T ss_dssp             BCEEEEEEBCCHHHHHHHSTTCCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEEC-----S-SSSCTTCC
T ss_pred             eeEEEEEEEcCHHHhhhhccCCCCCCeEEeccCCCCCccCCCCcccceEECC----EEEEEEeec-----C-CCCCCCcC
Confidence            5677888888988997432        3443  2356899999999999843    799999994     3 355 4678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       203 ~vyt~v~~  210 (222)
T 1hj8_A          203 GVYAKVCI  210 (222)
T ss_dssp             EEEEEGGG
T ss_pred             cEEEEhHH
Confidence            99999875

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=2.5e-41  Score=290.60  Aligned_cols=205  Identities=24%  Similarity=0.388  Sum_probs=163.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+...      +...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLI~~~~VLTAAHC~~~~------~~~~~~v~~G~~~~~~~~--~~~~   68 (218)
T 2z7f_E            1 IVGGRRARPHAWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV------NVRAVRVVLGAHNLSRRE--PTRQ   68 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECHHHHTTS------CGGGCEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCccCcEEEEEeCC----CcEEEEEEccCCEEEEcHHhcCCC------CcCcEEEEEeceecCCCC--CceE
Confidence            7899999999999999998753    789999999999999999999753      346789999999876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|++++.| +|+..+..||||||||++|+.|++.|+|||||.....      ......|. .+|||.....+.  ...
T Consensus        69 ~~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~  138 (218)
T 2z7f_E           69 VFAVQRIFEN-GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR------LGNGVQCL-AMGWGLLGRNRG--IAS  138 (218)
T ss_dssp             EEEEEEEEES-CCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCC------CCTTCEEE-EEESSBCSSSCC--BCS
T ss_pred             EEEEEEEEcc-CCCCCCCCCCEEEEEECCcCcCCCceeccCcCCCCCC------CCCCCEEE-EEEeCCCCCCCC--ccc
Confidence            8999999999 9999889999999999999999999999999976541      11223455 678886533221  234


Q ss_pred             eeeEEEEeecCeeeccccceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCC-CcceEEEeeeE
Q psy15989        180 GIVSITVARDGLRVCDTKHYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT-KHYVVFTDVKR  256 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~-~~~~v~~~V~~  256 (363)
                      .|+...+++. ...|...+.|....  ..+.|.|||||||++..    +|+||+|+..   +.  |.. ..+.+|++|..
T Consensus       139 ~l~~~~~~~~-~~~C~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~----~l~Gi~S~~~---g~--C~~~~~p~vyt~V~~  208 (218)
T 2z7f_E          139 VLQELNVTVV-TSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNG----LIHGIASFVR---GG--CASGLYPDAFAPVAQ  208 (218)
T ss_dssp             BCEEEEEEEE-CTTCCTTSEEEECTTSCCBCCTTCTTCEEEETT----EEEEEEEEES---SS--TTCSSSCEEEEEGGG
T ss_pred             hheEeeeEEe-hhHcCcceeeeccCCCCCeeCCCcCCCceEEcc----EEEEEEEeCC---cc--CCCCCCCeEEEEHHH
Confidence            5667777777 78898877777654  47899999999999853    8999999942   22  654 45899999865

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=4.2e-42  Score=312.59  Aligned_cols=222  Identities=26%  Similarity=0.453  Sum_probs=163.1

Q ss_pred             CCCccccC-CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEec
Q psy15989          7 SCGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG   85 (363)
Q Consensus         7 ~CG~~~~~-~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G   85 (363)
                      .||++..+ ....||+||.+|.+++|||||+|+.      .++||||||+++||||||||+...... ......+.|++|
T Consensus        76 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~------~~~CgGsLIs~~~VLTAAHCv~~~~~~-~~~~~~~~V~~G  148 (329)
T 1md8_A           76 VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI------HGRGGGALLGDRWILTAAHTLYPKEHE-AQSNASLDVFLG  148 (329)
T ss_dssp             CCSCCSSCCCCC--CBSCCBCCTTSCTTEEEEES------SSEEEEEEETTTEEEECGGGTSCTTC------CCCCEEES
T ss_pred             CCCCCCCcccccccccCCEECCCCCCCCeEeecc------CCCcceEEecCCEEEecCCEEEeCCcc-cCCCceEEEEec
Confidence            69986322 3457999999999999999999964      346999999999999999999742211 113456789999


Q ss_pred             eecccccCCCCCceeeeeeEEEECCCCCCC---CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecC
Q psy15989         86 KYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNG  162 (363)
Q Consensus        86 ~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~---~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g  162 (363)
                      .+++...   ...+.+.|+++++||+|+..   ++.||||||||++|+.|+++|+|||||.... .     ......|. 
T Consensus       149 ~~~~~~~---~~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~-~-----~~~g~~~~-  218 (329)
T 1md8_A          149 HTNVEEL---MKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT-F-----YDLGLMGY-  218 (329)
T ss_dssp             CSBHHHH---HHHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGG-G-----GCTTCEEE-
T ss_pred             ccccccc---ccccceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCcc-c-----cCCCCEEE-
Confidence            9876432   12346789999999999865   6789999999999999999999999996543 1     11122444 


Q ss_pred             CCCccceEEecCeeEEeeeeEEEEeecCeeecccc-------------ceEEecC--CCccCcccccceeEEEE--cCcc
Q psy15989        163 DSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK-------------HYVVFTD--VANVCNGDSGGGMVFKI--DSAW  225 (363)
Q Consensus       163 ~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-------------~~~~~~~--~~~~C~gdsGgpl~~~~--~~~~  225 (363)
                      .+|||.+...    ....|+...+++++...|...             +.|+...  ..+.|.|||||||++..  +++|
T Consensus       219 v~GWG~t~~~----~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~  294 (329)
T 1md8_A          219 VSGFGVMEEK----IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRW  294 (329)
T ss_dssp             EEECCBCSSS----BCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEE
T ss_pred             EEeCCCCCCC----CCccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcE
Confidence            6788864321    234577888899999999632             2344432  56899999999999963  5789


Q ss_pred             EEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        226 YLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       226 ~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      +|+||+||+     . .|.. .+.+|++|..
T Consensus       295 ~l~GIvS~G-----~-~C~~-~~gvyT~V~~  318 (329)
T 1md8_A          295 VATGIVSWG-----I-GCSR-GYGFYTKVLN  318 (329)
T ss_dssp             EEEEEEEEC-----S-SSSS-SCEEEEEGGG
T ss_pred             EEEEEEEEC-----C-CcCC-CCcEEEEHHH
Confidence            999999994     2 3664 4799999865

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=5.6e-41  Score=290.13  Aligned_cols=203  Identities=24%  Similarity=0.314  Sum_probs=158.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+.... +..++||||||+++||||||||+..          .+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-~~~~~CgGsLI~~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~--~~~~   67 (227)
T 1euf_A            1 IIGGHEAKPHSRPYMAFLLFKTS-GKSHICGGFLVREDFVLTAAHCLGS----------SINVTLGAHNIMERE--RTQQ   67 (227)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS-SSEEEEEEEEEETTEEEECGGGCCE----------EEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCeECCCCCcCCEEEEEEeCC-CCceEEEEEEeeCCEEEECHHHCCC----------CcEEEEcccccCCCC--CccE
Confidence            79999999999999999987532 2278999999999999999999853          488999999876533  5568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....      ......|. .+|||......  ....
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~--~~~~  138 (227)
T 1euf_A           68 VIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAE------VKPGMMCS-VAGWGRLGVNM--PSTD  138 (227)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCC------CCTTCEEE-EEESCBSSTTC--CBCS
T ss_pred             EEEEEEEEeCCCCCCCCCcCceEEEEECCcCcCCCceeccCCCCcccc------CCCCCEEE-EEEEccCCCCC--CCch
Confidence            899999999999999899999999999999999999999999976541      11123444 67787643211  1234


Q ss_pred             eeeEEEEeecCeeeccccc--------eEEecCC--CccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcc
Q psy15989        180 GIVSITVARDGLRVCDTKH--------YVVFTDV--ANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~--------~~~~~~~--~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~  248 (363)
                      .|+...+++.+...|...+        .|.....  ...|.|||||||++..    +|+||+|++        |. ...+
T Consensus       139 ~L~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~----~l~Gi~S~g--------c~~~~~p  206 (227)
T 1euf_A          139 KLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPLVCNG----VAQGIVSYG--------RNDGTTP  206 (227)
T ss_dssp             BCEEEEEEBCCTHHHHTTCTTCCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEEEEEEC--------CTTCCSC
T ss_pred             hheEeEeccccHHHhhHhhcCcCCCcEEEccCCCCCCcccccCCCCceEECC----EEEEEEEEe--------CCCCCCC
Confidence            5778888999999997532        3443322  5678999999999853    899999993        43 3568


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       207 ~vyt~V~~  214 (227)
T 1euf_A          207 DVYTRISS  214 (227)
T ss_dssp             EEEEEGGG
T ss_pred             eEEEEHHH
Confidence            99999865

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=3.8e-41  Score=291.16  Aligned_cols=205  Identities=24%  Similarity=0.399  Sum_probs=160.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...   ..++||||||+++||||||||+..          .+.|++|.+++.... +...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---~~~~CgGtLIs~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~-~~~~~   66 (227)
T 2psx_A            1 IINGSDCDMHTQPWQAALLLRP---NQLYCGAVLVHPQWLLTAAHCRKK----------VFRVRLGHYSLSPVY-ESGQQ   66 (227)
T ss_dssp             CBTCEECCTTSCTTEEEEEETT---TEEEEEEEEEETTEEEECGGGCCS----------SCEEEESCCBSSCCC-CTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEecC---CCceEEEEEEcCCEEEEhHHcCCC----------CcEEEEeeeecccCC-CCCcE
Confidence            7999999999999999998653   278999999999999999999852          468999999876432 24567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|.++++||+|+..+..||||||||++|+.|++.|+|||||....       ..+ ..|. .+|||....... ....
T Consensus        67 ~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~-------~~~-~~~~-v~GwG~~~~~~~-~~~~  136 (227)
T 2psx_A           67 MFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCP-------SAG-TKCL-VSGWGTTKSPQV-HFPK  136 (227)
T ss_dssp             EEEEEEEEECTTCCSSSCTTCCEEEEESSCCCCCSSSCCCCBCSSCC-------CTT-CEEE-EEESSCSSSSSC-CCCS
T ss_pred             EEEEEEEEeCCCCCCCCCCCCEEEEEeCCCCCCCCceeeeECCCCCC-------CCC-CEEE-EEeCcccCCCCC-CCCc
Confidence            89999999999999988999999999999999999999999986543       112 2454 678886532211 1234


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEec-CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcce
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVFT-DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~~-~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~~  249 (363)
                      .|+...+++.+...|...        +.|... ...+.|.|||||||++..    +|+||+|+     +...|. ...+.
T Consensus       137 ~L~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~-----g~~~C~~~~~p~  207 (227)
T 2psx_A          137 VLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQGDSGGPVVCNG----SLQGLVSW-----GDYPCARPNRPG  207 (227)
T ss_dssp             BCEEEEEEBCCHHHHHHHSTTTCCTTEEEECCSTTCBCCTTCTTCEEEETT----EEEEEEEE-----CCSSTTCTTCCE
T ss_pred             hheEEEEEecCHhHhhhhcCCCCCCCEEcccCCCCCccCCCCCCcceeeCC----EEEEEEee-----cCCCCCCCCCCc
Confidence            577888889998899642        234443 356899999999999854    89999999     422454 46789


Q ss_pred             EEEeeeEE
Q psy15989        250 VFTDVKRV  257 (363)
Q Consensus       250 v~~~V~~i  257 (363)
                      +|++|..+
T Consensus       208 vyt~V~~~  215 (227)
T 2psx_A          208 VYTNLCKF  215 (227)
T ss_dssp             EEEEGGGC
T ss_pred             EEEEHHHh
Confidence            99998753

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=3.3e-41  Score=290.69  Aligned_cols=200  Identities=26%  Similarity=0.385  Sum_probs=157.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+ .+    .++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~----~~~CgGsLIs~~~VLTAAHC~~----------~~~~v~~G~~~~~~~~--~~~~   63 (223)
T 3mfj_A            1 IVGGYTCGANTVPYQVSLN-SG----YHFCGGSLINSQWVVSAAHCYK----------SGIQVRLGEDNINVVE--GNEQ   63 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SS----SEEEEEEEEETTEEEECGGGCC----------SSCEEEESCSSTTSCC--SCCE
T ss_pred             CCCCEECCCCcCCEEEEEE-cC----CeEEEEEEecCCEEEEhHHhcC----------CCcEEEECCceecccC--CCcE
Confidence            7899999999999999994 22    6899999999999999999983          2468999998876443  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||....       ..+ ..|. .+|||.....+. ....
T Consensus        64 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~-~~~~-v~GwG~~~~~~~-~~~~  133 (223)
T 3mfj_A           64 FISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-------SAG-TQCL-ISGWGNTKSSGT-SYPD  133 (223)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-------CTT-CEEE-EEESSCCCSSSC-CCCS
T ss_pred             EEEeeEEEECCCCCCCCCCCCEEEEEeCCCcccCCcEeeeECCCCCC-------CCC-CEEE-EEeeeccCCCCC-cccc
Confidence            89999999999999988999999999999999999999999997654       112 2454 678886532211 1234


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcc
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~  248 (363)
                      .|+...+++++.+.|...        +.|..  ....+.|.|||||||++..    +|+||+|++     . .|. ...+
T Consensus       134 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g-----~-~C~~~~~p  203 (223)
T 3mfj_A          134 VLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWG-----S-GCAQKNKP  203 (223)
T ss_dssp             SCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEEC-----S-SSSBTTBC
T ss_pred             hheEEEEEEeCHHHhhhhhcCcCCCCEEEccCCCCCCCcCCCCcccceEECC----EEEEEEEEC-----C-CCCCCCCC
Confidence            567788888999899642        23443  2356899999999999843    799999994     2 354 4678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       204 ~vyt~V~~  211 (223)
T 3mfj_A          204 GVYTKVCN  211 (223)
T ss_dssp             EEEEEGGG
T ss_pred             eEEEEHHH
Confidence            99999875

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=4.7e-41  Score=290.34  Aligned_cols=206  Identities=22%  Similarity=0.340  Sum_probs=162.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+...      ....+.|++|.+++.... ....+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLI~~~~VLTAAHC~~~~------~~~~~~V~~G~~~~~~~~-~~~~~   69 (225)
T 1a7s_A            1 IVGGRKARPRQFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ------NPGVSTVVLGAYDLRRRE-RQSRQ   69 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGC----------CCSEEEEESCSSTTSCC-TTTCE
T ss_pred             CCCCEECCCCCCCcEEEEecCC----CcEEEEEEeeCCEEEEchhccCCC------CCCceEEEEeeeECCCCC-Cccee
Confidence            7899999999999999998653    789999999999999999999753      346799999999876543 12237


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|++++.| +|+..+..||||||+|++|+.|++.++|||||.....      ......|. .+|||.....+.  ...
T Consensus        70 ~~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~  139 (225)
T 1a7s_A           70 TFSISSMSEN-GYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNAT------VEAGTRCQ-VAGWGSQRSGGR--LSR  139 (225)
T ss_dssp             EEEEEEEECS-SCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCC------CCTTCEEE-EEESCCSSTTCC--CCS
T ss_pred             EEeEEEEecc-cccCCCCcCCEEEEEcCCcccCCCceeEEEcCCCcCC------CCCCCEEE-EEeCCcCCCCCC--ccc
Confidence            8999999999 9999889999999999999999999999999976541      11123454 678876532211  234


Q ss_pred             eeeEEEEeecCeeeccccceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        180 GIVSITVARDGLRVCDTKHYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      .++...+++.+...|...+.|....  ..+.|.|||||||++..    +|+||+|++     ...|... +.+|++|..
T Consensus       140 ~l~~~~~~~~~~~~C~~~~~Ca~~~~~~~~~C~GDSGgPl~~~g----~l~Gi~S~g-----~~~C~~~-p~vyt~V~~  208 (225)
T 1a7s_A          140 FPRFVNVTVTPEDQCRPNNVCTGVLTRRGGICNGDGGTPLVCEG----LAHGVASFS-----LGPCGRG-PDFFTRVAL  208 (225)
T ss_dssp             SCEEEEEEECCGGGSCTTEEEEECSSSSCBCCTTCTTCEEEETT----EEEEEEEEE-----CSSTTSS-CEEEEEGGG
T ss_pred             ccceeeeEECCHHHhccCceEEeccCCCCCcccCCCcchheeCC----EEEEEEEEc-----cCCcCCC-CcEEEEhHH
Confidence            5677888899999999877777643  46899999999999963    899999994     2357666 899999875

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=6.8e-41  Score=289.82  Aligned_cols=205  Identities=24%  Similarity=0.288  Sum_probs=162.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+.....+..++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~----------~~~~v~~G~~~~~~~~--~~~~   68 (227)
T 3fzz_A            1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKG----------RSMTVTLGAHNIKAKE--ETQQ   68 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSSSCEEEEEEEEEETTEEEECTTCCC----------EEEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCcCCEEEEEEEeCCCceeEEEEEEEeCCEEEECcccCC----------CCcEEEEcccccCCCC--CCce
Confidence            789999999999999999876544447899999999999999999984          3589999999886554  5668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|++.++|||||.....      ......|. .+|||.....+  ....
T Consensus        69 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~--~~~~  139 (227)
T 3fzz_A           69 IIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAH------VKPGDECY-VAGWGKVTPDG--EFPK  139 (227)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCC------CCTTCEEE-EEESSCSSTTS--CCCS
T ss_pred             EEEEEEEEECcCCCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccC------CCCCCEEE-EEECCcccCCC--CCCC
Confidence            899999999999999999999999999999999999999999976651      11223455 67887643222  1235


Q ss_pred             eeeEEEEeecCeeeccc---------cceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDT---------KHYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~---------~~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .|+...+++.+...|..         ...|...  ...+.|.|||||||++..    .|+||+|++     . .|... +
T Consensus       140 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~----~l~Gi~S~g-----~-~c~~~-p  208 (227)
T 3fzz_A          140 TLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDSGGPLVCKR----AAAGIVSYG-----Q-TDGSA-P  208 (227)
T ss_dssp             BCEEEEEEBCCHHHHHHHHTTTCCTTTEEEECCCSSCBCCTTTTTTCEEEETT----EEEEEEEEC-----C-TTCSS-S
T ss_pred             eeeEEEeeeecHHHhhhhhccccCCCceEEEeCCCCCCcccccCCccceEEec----CCcEEEEEC-----C-CCCCC-C
Confidence            57788899999999963         2234432  346789999999999854    899999994     2 35433 8


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       209 ~vyt~V~~  216 (227)
T 3fzz_A          209 QVFTRVLS  216 (227)
T ss_dssp             EEEEEGGG
T ss_pred             eEEEEhHH
Confidence            89999865

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=1.2e-40  Score=287.75  Aligned_cols=202  Identities=28%  Similarity=0.418  Sum_probs=156.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGsLI~~~~VLTAAHC~~----------~~~~v~~G~~~~~~~~--~~~~   64 (225)
T 1npm_A            1 ILEGRECIPHSQPWQAALFQGE----RLICGGVLVGDRWVLTAAHCKK----------QKYSVRLGDHSLQSRD--QPEQ   64 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGCC----------SSCEEEESCSBTTC----CCCE
T ss_pred             CCCCEECCCCCcCcEEEEeeCC----ceEEEEEEECCCEEEEhHHcCC----------CCceEEEeeeEcCCCC--CCcE
Confidence            7899999999999999997532    7899999999999999999984          2478999999876543  4568


Q ss_pred             eeeeeEEEECCCC-CC--CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCee
Q psy15989        100 NKQVKRVHIYPTF-NS--SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAW  176 (363)
Q Consensus       100 ~~~V~~i~~hp~y-~~--~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~  176 (363)
                      .+.|+++++||+| +.  .+..||||||||++|+.|++.|+|||||....       ..+ ..|. .+|||....... .
T Consensus        65 ~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~-------~~~-~~~~-v~GwG~~~~~~~-~  134 (225)
T 1npm_A           65 EIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCP-------KVG-QKCI-ISGWGTVTSPQE-N  134 (225)
T ss_dssp             EECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCC-------CTT-CEEE-EEESSCSSSSSC-C
T ss_pred             EEEEEEEEECCCCCCCCccCccccEEEEeeCCcccCCCceeceECCCCCC-------CCC-CEEE-EEeCCcccCCCC-C
Confidence            8999999999999 55  66789999999999999999999999997654       112 2444 678886522111 1


Q ss_pred             EEeeeeEEEEeecCeeecccc--------ceEEec-CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CC
Q psy15989        177 YLRGIVSITVARDGLRVCDTK--------HYVVFT-DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TK  246 (363)
Q Consensus       177 ~~~~l~~~~~~~~~~~~C~~~--------~~~~~~-~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~  246 (363)
                      ....|+...+++++...|...        +.|... ...+.|.|||||||++..    +|+||+|++     ...|. ..
T Consensus       135 ~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g-----~~~C~~~~  205 (225)
T 1npm_A          135 FPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQGDSGGPLVCDG----MLQGITSWG-----SDPCGKPE  205 (225)
T ss_dssp             CCSBCEEEEEEECCHHHHHHHSTTTCCTTEEEEECTTCCBCCTTCTTCEEEETT----EEEEEEEEC-----CSSSCBTT
T ss_pred             CCccceEeEEeeecHHHhhHHhCCCCCCCEEeecCCCCCeecCCCCCchheECC----EEEEEEEeC-----CCCCCCCC
Confidence            234577788888998899642        345543 357899999999999843    799999994     23465 46


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .+.+|++|..
T Consensus       206 ~p~vyt~V~~  215 (225)
T 1npm_A          206 KPGVYTKICR  215 (225)
T ss_dssp             BCEEEEEHHH
T ss_pred             CCeEEEEHHH
Confidence            7899999865

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=1.9e-40  Score=286.36  Aligned_cols=205  Identities=25%  Similarity=0.293  Sum_probs=162.9

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||+|+|+.....+..++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~----------~~~~v~~g~~~~~~~~--~~~~   68 (224)
T 3rp2_A            1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG----------REITVILGAHDVRKRE--STQQ   68 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC----------SEEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCcEEEEEeEEeeCCEEEEchhcCC----------CCcEEEEeccccCcCC--CCcE
Confidence            789999999999999999887654557899999999999999999984          3689999999876544  5668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.++|||||.....      ......|. .+|||......  ....
T Consensus        69 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~------~~~~~~~~-v~GwG~~~~~~--~~~~  139 (224)
T 3rp2_A           69 KIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDF------IHPGAMCW-AAGWGKTGVRD--PTSY  139 (224)
T ss_dssp             EEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCC------CCTTCEEE-EEESSEEETTE--EECS
T ss_pred             EEEEEEEEECCCccCCCCCccEEEEEcCCCcccCCcccceecCCcccC------CCCCCEEE-EEeCCCCCCCC--CCCc
Confidence            899999999999999999999999999999999999999999976651      11223555 68888754221  1234


Q ss_pred             eeeEEEEeecCeeeccc-------cceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceE
Q psy15989        180 GIVSITVARDGLRVCDT-------KHYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVV  250 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~-------~~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v  250 (363)
                      .++...+.+.+...|..       ...|...  ...+.|.|||||||++..    +|+||+|++     . .|... +.+
T Consensus       140 ~l~~~~~~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g-----~-~c~~~-p~v  208 (224)
T 3rp2_A          140 TLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG----VAHGIVSYG-----H-PDAKP-PAI  208 (224)
T ss_dssp             BCEEEEEEEECGGGTTTTTCCCTTTEEEECCTTSCCBCCTTTTTCEEEETT----EEEEEEEEC-----C-TTCCS-CEE
T ss_pred             eeeEeeeeecChHHhccccccCcCCEEEecCCCCCCeeccCCCCCeEEEcc----eeeEEEEEC-----C-CCCCC-CcE
Confidence            57788888899999973       2234432  346899999999999853    999999994     3 25444 889


Q ss_pred             EEeeeE
Q psy15989        251 FTDVKR  256 (363)
Q Consensus       251 ~~~V~~  256 (363)
                      |++|..
T Consensus       209 yt~v~~  214 (224)
T 3rp2_A          209 FTRVST  214 (224)
T ss_dssp             EEEHHH
T ss_pred             EEEHHH
Confidence            998865

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=1.6e-41  Score=293.17  Aligned_cols=205  Identities=25%  Similarity=0.375  Sum_probs=160.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+..        ...+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLI~~~~VLTAAHC~~~--------~~~~~v~~G~~~~~~~~--~~~~   66 (226)
T 1azz_A            1 IVGGVEAVPNSWPHQAALFIDD----MYFCGGSLISPEWILTAAHCMDG--------AGFVDVVLGAHNIREDE--ATQV   66 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----TEEEEEEEEETTEEEECHHHHTT--------CSCEEEEESCSBSSSCC--TTCE
T ss_pred             CCCCEECCCCCcCCEEEEEECC----cEEEEEEEecCCEEEEhHHhcCC--------CCceEEEEcceEcCCCC--CccE
Confidence            7999999999999999998732    78999999999999999999963        35689999999876543  4567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|++.|+|||||.....       .+ ..|. .+|||....... ....
T Consensus        67 ~~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~-------~~-~~~~-v~GwG~~~~~~~-~~~~  136 (226)
T 1azz_A           67 TIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVG-------VG-TVVT-PTGWGLPSDSAL-GISD  136 (226)
T ss_dssp             EEEECCEEECTTCBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCCC-------TT-CEEE-EEESSCSSTTCS-SSCS
T ss_pred             EEEEEEEEECCCCCCCCCCCceEEEEECCccccCCCcccccCCCCCCC-------CC-CEEE-EEeCCccCCCCC-CCCc
Confidence            899999999999999889999999999999999999999999976541       12 2344 577775432111 1234


Q ss_pred             eeeEEEEeecCeeecccc-------ceEEec-CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEE
Q psy15989        180 GIVSITVARDGLRVCDTK-------HYVVFT-DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF  251 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~-------~~~~~~-~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~  251 (363)
                      .|+...+++++...|...       +.|... ...+.|.|||||||++.    ++|+||+|++..    ..|....+.+|
T Consensus       137 ~L~~~~~~i~~~~~C~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~----~~l~Gi~S~g~~----~~C~~~~p~vy  208 (226)
T 1azz_A          137 VLRQVDVPIMSNADCDAVYGIVTDGNICIDSTGGKGTCNGDSGGPLNYN----GLTYGITSFGAA----AGCEAGYPDAF  208 (226)
T ss_dssp             BCEECCEEEECHHHHHHHHSCCCTTEEEECCTTTCBCCTTCTTCEEEET----TEEEEEEEEEET----TCTTSCCCEEE
T ss_pred             hhEEeeEEEEChhHhhhhhCcCCCceEeecCCCCCccCCCCCCcceEEC----CEEEEEEEEECC----CCCCCCCCCEE
Confidence            466777888888888642       234432 35689999999999963    289999999531    24776778999


Q ss_pred             EeeeE
Q psy15989        252 TDVKR  256 (363)
Q Consensus       252 ~~V~~  256 (363)
                      ++|..
T Consensus       209 t~V~~  213 (226)
T 1azz_A          209 TRVTY  213 (226)
T ss_dssp             EESGG
T ss_pred             EEHHH
Confidence            99865

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=1.4e-41  Score=296.39  Aligned_cols=204  Identities=30%  Similarity=0.457  Sum_probs=137.1

Q ss_pred             ceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCC
Q psy15989         18 PLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGG   97 (363)
Q Consensus        18 ~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~   97 (363)
                      .||+||.+|.+++|||||+|+ ..   ..++||||||+++||||||||+..          .+.|++|.+++....  ..
T Consensus         2 arIvgG~~a~~~~~Pw~v~l~-~~---~~~~CgGsLIs~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~--~~   65 (240)
T 1sgf_A            2 APPVQSQVDCENSQPWHVAVY-RF---NKYQCGGVLLDRNWVLTAAHCYND----------KYQVWLGKNNFLEDE--PS   65 (240)
T ss_dssp             -----------CCCTTEEEEE-CT---TSCCEEEEECSSSEEEECGGGCCS----------CCEEEECC----C-C--TT
T ss_pred             CcccCCeECCCCCcCCEEEEE-eC---CCeEEEEEEecCCEEEECHHhCCC----------CceEEeCCcccccCC--CC
Confidence            589999999999999999994 21   168899999999999999999852          468999998875433  45


Q ss_pred             ceeeeeeEEEECCCCCCC-----------CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCc
Q psy15989         98 VQNKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGG  166 (363)
Q Consensus        98 ~~~~~V~~i~~hp~y~~~-----------~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~  166 (363)
                      .+.+.|+++++||+|+..           +..||||||+|++|+.|++.|+|||||....       ..+ ..|. .+||
T Consensus        66 ~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~-~~~~-v~Gw  136 (240)
T 1sgf_A           66 DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEP-------KLG-STCL-ASGW  136 (240)
T ss_dssp             CEEEEEEEEEECTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCC-------CTT-CEEE-EC--
T ss_pred             ceEEEEEEEEcCCCCcccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCCC-------CCC-CEEE-EEec
Confidence            688999999999999865           6789999999999999999999999997654       122 3455 7899


Q ss_pred             cceEEecCeeEEeeeeEEEEeecCeeeccccc--------eEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEe
Q psy15989        167 GMVFKIDSAWYLRGIVSITVARDGLRVCDTKH--------YVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVA  236 (363)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~--------~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~  236 (363)
                      |....... .....|+...+++++...|...+        .|...  ...+.|.|||||||++..    +|+||+|++  
T Consensus       137 G~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g--  209 (240)
T 1sgf_A          137 GSTTPIKF-KYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG----ILQGITSWG--  209 (240)
T ss_dssp             -----C----------CEEEEEECTHHHHTTCSSBCCTTEEEEEECSSSEEECCCCTTCEEEETT----EEEEEECCC--
T ss_pred             CCCCCCCC-CCCccccEEeeeEeCHHHhhhhhCCCcCCCeEeEccCCCCCCCCCCCCcCcEEEcc----EEEEEEEEC--
Confidence            87643221 12345677788888888896432        34432  345799999999999843    899999993  


Q ss_pred             cCcceecC-CCcceEEEeeeE
Q psy15989        237 RDGLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       237 ~~g~~~c~-~~~~~v~~~V~~  256 (363)
                         ...|. ...+.+|++|..
T Consensus       210 ---~~~C~~~~~p~vyt~V~~  227 (240)
T 1sgf_A          210 ---PEPCGEPTEPSVYTKLIK  227 (240)
T ss_dssp             ---CSSCCCSSCCEEEEESGG
T ss_pred             ---CCCCCCCCCCeEEEeHHH
Confidence               23465 367899999875

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=4.1e-41  Score=292.99  Aligned_cols=202  Identities=27%  Similarity=0.447  Sum_probs=158.9

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..+    .++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGsLIs~~~VLTAAHC~~----------~~~~v~~G~~~~~~~~--~~~~   64 (237)
T 1gvz_A            1 IIGGWECEKHSKPWQVAVYHQG----HFQCGGVLVHPQWVLTAAHCMS----------DDYQIWLGRHNLSKDE--DTAQ   64 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGCC----------SSCEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCeEEEEeeCC----ceEEEeEEeeCCEEEEcHHhCC----------CCCeEEEeecccccCC--CCce
Confidence            7899999999999999997642    6899999999999999999984          2478999999886543  4568


Q ss_pred             eeeeeEEEECCCCCCCCC-----------CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccc
Q psy15989        100 NKQVKRVHIYPTFNSSNY-----------LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM  168 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~-----------~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~  168 (363)
                      .+.|+++++||+|+....           .||||||+|++|+.|++.|+|||||.....       .+ ..|. .+|||.
T Consensus        65 ~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-------~~-~~~~-v~GwG~  135 (237)
T 1gvz_A           65 FHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPK-------LG-STCY-TSGWGL  135 (237)
T ss_dssp             EECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCC-------TT-CEEE-EEEEEC
T ss_pred             EEEeeeEecCCccCcccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCCCC-------CC-CEEE-EECCCc
Confidence            899999999999987666           899999999999999999999999976641       12 2444 577775


Q ss_pred             eEEecCeeEEeeeeEEEEeecCeeeccccc--------eEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecC
Q psy15989        169 VFKIDSAWYLRGIVSITVARDGLRVCDTKH--------YVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARD  238 (363)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~--------~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~  238 (363)
                      ...... .....|+...+++++.+.|...+        .|...  ...+.|.|||||||++..    +|+||+|++    
T Consensus       136 ~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g----  206 (237)
T 1gvz_A          136 ISTFTN-RGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALICDG----VFQGITSWG----  206 (237)
T ss_dssp             SCTTTC-SEEEEEEEEEEEEECGGGGCSSCGGGCCTTEEEEECSSTTCEECGGGTTCEEEETT----EEEEEECCC----
T ss_pred             ccCCCC-CCCCccEEEEEeEeChhHhhhhhhhcCCCceEEEeeCCCCCccCCCCccCcEeeCC----EEEEEEEeC----
Confidence            422111 12445778888899999997543        34443  346789999999999843    799999994    


Q ss_pred             cceecC-CCcceEEEeeeE
Q psy15989        239 GLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       239 g~~~c~-~~~~~v~~~V~~  256 (363)
                       ...|. ...+.+|++|..
T Consensus       207 -~~~C~~~~~p~vyt~V~~  224 (237)
T 1gvz_A          207 -YSECADFNDNFVFTKVMP  224 (237)
T ss_dssp             -SSSCEETTTSCCEEESGG
T ss_pred             -CCCCCCCCCCcEEEEHHH
Confidence             32465 567889999865

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=4.1e-41  Score=293.01  Aligned_cols=202  Identities=27%  Similarity=0.415  Sum_probs=158.1

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLI~~~~VLTAAHC~~----------~~~~v~~G~~~~~~~~--~~~~   64 (237)
T 1ao5_A            1 VVGGFNCEKNSQPWQVAVYYQK----EHICGGVLLDRNWVLTAAHCYV----------DQYEVWLGKNKLFQEE--PSAQ   64 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEEEETTEEEECTTCCC----------SSCEEEESCCBSSSCC--SSCE
T ss_pred             CCCCeECCCCCcCCEEEEeeCC----CeEEEEEEeeCCEEEECHHHCC----------CCCEEEecccccccCC--CCcE
Confidence            7899999999999999998643    7899999999999999999994          2478999999876433  4568


Q ss_pred             eeeeeEEEECCCCCCCCC-----------CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccc
Q psy15989        100 NKQVKRVHIYPTFNSSNY-----------LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM  168 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~-----------~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~  168 (363)
                      .+.|+++++||+|+....           .||||||+|++|+.|++.|+|||||....       ..+ ..|. .+|||.
T Consensus        65 ~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~-~~~~-v~GwG~  135 (237)
T 1ao5_A           65 HRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEP-------KPG-SKCL-ASGWGS  135 (237)
T ss_dssp             ECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCC-------CTT-CEEE-EEESCC
T ss_pred             EEEEEEEEcCCCcCcccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCCC-------CCC-CEEE-EEECCc
Confidence            889999999999987655           89999999999999999999999997654       112 3454 678876


Q ss_pred             eEEecCeeEEeeeeEEEEeecCeeecccc--------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecC
Q psy15989        169 VFKIDSAWYLRGIVSITVARDGLRVCDTK--------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARD  238 (363)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~  238 (363)
                      +..... .....|+...+++++...|...        +.|..  ....+.|.|||||||++..    +|+||+|++    
T Consensus       136 ~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g----  206 (237)
T 1ao5_A          136 ITPTRW-QKPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG----ILQGTTSYG----  206 (237)
T ss_dssp             SSCC-C-CCCSBCEEEEEEEECHHHHHHHCSSCCCTTEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEEC----
T ss_pred             cCCCCC-CCCCcccEEEEEecChhHhhhhhcccCCCCEEEEccCCCCCCCCCCCCcceEEECC----EEeEEEeEc----
Confidence            533211 1234567788888888889642        24554  2456899999999999843    899999994    


Q ss_pred             cceecC-CCcceEEEeeeE
Q psy15989        239 GLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       239 g~~~c~-~~~~~v~~~V~~  256 (363)
                       ...|. ...+.+|++|..
T Consensus       207 -~~~C~~~~~p~vyt~V~~  224 (237)
T 1ao5_A          207 -PVPCGKPGVPAIYTNLIK  224 (237)
T ss_dssp             -CSSTTCTTCCEEEECGGG
T ss_pred             -CCCCCCCCCCcEEEEHHH
Confidence             23465 357899999875

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=290.56  Aligned_cols=202  Identities=26%  Similarity=0.407  Sum_probs=158.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+.+          .+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGsLIs~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~--~~~~   64 (238)
T 1spj_A            1 IVGGWECEQHSQPWQAALYHFS----TFQCGGILVHRQWVLTAAHCISD----------NYQLWLGRHNLFDDE--NTAQ   64 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGCCS----------SEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEeCC----CeeEEEEEecCCEEEEcHHhCCC----------CceEEEEeccccCCC--CCce
Confidence            7999999999999999998643    78999999999999999999953          478999999876543  5568


Q ss_pred             eeeeeEEEECCCCC-----------CCCCCCCeEEEEeCCccc-CCCCccceEecCCCCCCceeeeeeceeeecCCCCcc
Q psy15989        100 NKQVKRVHIYPTFN-----------SSNYLGDIALLQLSSDVD-YSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGG  167 (363)
Q Consensus       100 ~~~V~~i~~hp~y~-----------~~~~~nDIALl~L~~~~~-~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~  167 (363)
                      .+.|+++++||+|+           ..+..||||||+|++|+. |++.|+|||||....       ..+ ..|. .+|||
T Consensus        65 ~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~-------~~~-~~~~-v~GwG  135 (238)
T 1spj_A           65 FVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEP-------EVG-STCL-ASGWG  135 (238)
T ss_dssp             EECEEEEEECTTSCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCC-------CTT-CEEE-EEESS
T ss_pred             EEEEEEEEcCCCccccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCCC-------CCC-CEEE-EEecC
Confidence            89999999999998           456789999999999999 999999999997654       112 2454 67887


Q ss_pred             ceEEecCeeEEeeeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEec
Q psy15989        168 MVFKIDSAWYLRGIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVAR  237 (363)
Q Consensus       168 ~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~  237 (363)
                      .+...+. .....|+...+++++...|...        +.|+..  ...+.|.|||||||++.    ++|+||+|++   
T Consensus       136 ~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~----~~l~Gi~S~g---  207 (238)
T 1spj_A          136 SIEPENF-SFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCD----GVLQGVTSWG---  207 (238)
T ss_dssp             CSSSSSC-CCCSBCEEEEEEEECHHHHHHHCSSCCCTTEEEEECTTCSSBCCTTCTTCEEEET----TEEEEEEEEC---
T ss_pred             CCCCCCC-CCcCcccEEEEeecCHHHhhhhccCCCCCCeEEeeCCCCCCCCCCCCCCCcEEEc----CEEEEEEEeC---
Confidence            6533221 1234577788888888899632        345542  35789999999999985    3899999994   


Q ss_pred             CcceecC-CCcceEEEeeeE
Q psy15989        238 DGLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       238 ~g~~~c~-~~~~~v~~~V~~  256 (363)
                        ...|. ...+.+|++|..
T Consensus       208 --~~~C~~~~~p~vyt~V~~  225 (238)
T 1spj_A          208 --YVPCGTPNKPSVAVRVLS  225 (238)
T ss_dssp             --CSSTTCTTCCEEEEEGGG
T ss_pred             --CCCCCCCCCCeEEEEHHH
Confidence              23465 467899999865

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=2.3e-40  Score=286.26  Aligned_cols=205  Identities=22%  Similarity=0.283  Sum_probs=158.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+.....+..++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~----------~~~~v~~G~~~~~~~~--~~~~   68 (226)
T 4ag1_A            1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----------RSITVTLGAHNITEEE--DTWQ   68 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECSSSSCEEEEEEEEETTEEEECGGGCC----------SEEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCCcccEEEEEEEeCCEEEECcccCC----------CCeEEEeCCcccCCCC--Ccce
Confidence            789999999999999999877544447899999999999999999984          3689999999876544  5568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|.++++||+|+..+..||||||||++|+.|++.++|||||.....      ......|. .+|||......  ....
T Consensus        69 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~------~~~~~~~~-v~GwG~~~~~~--~~~~  139 (226)
T 4ag1_A           69 KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF------VPPGRMCR-VAGWGRTGVLK--PGSD  139 (226)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSSCCCCCC-----------CCTTCEEE-EEESSBSSTTS--CBCS
T ss_pred             EEEEEEEEeCCCCCCCCCcCcEEEEEECCCCccCCceeccccCCcccC------CCCCCEEE-EEECCCCCCCC--CCCC
Confidence            899999999999999999999999999999999999999999876541      11223454 67787643211  1234


Q ss_pred             eeeEEEEeecCeeeccc-------cceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceE
Q psy15989        180 GIVSITVARDGLRVCDT-------KHYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVV  250 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~-------~~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v  250 (363)
                      .|+...+++.+...|..       ...|...  ...+.|.|||||||++.    ++|+||+|++     . .|... +.+
T Consensus       140 ~L~~~~~~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~----~~l~Gi~S~g-----~-~c~~~-p~v  208 (226)
T 4ag1_A          140 TLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVSYG-----R-SDAKP-PAV  208 (226)
T ss_dssp             BCEEEEEEEECGGGGTTSTTCCTTTEEEESCTTSCCBCCTTCTTCEEEET----TEEEEEEEEC-----B-TTCCS-CEE
T ss_pred             EeEEEEEEEcChHHcccccCcCccceEeeccCCCCCcCccCCCCCceEEc----CEEEEEEEEC-----C-CCCCC-CCE
Confidence            56778888889999972       2234432  35689999999999984    3999999994     2 35444 899


Q ss_pred             EEeeeE
Q psy15989        251 FTDVKR  256 (363)
Q Consensus       251 ~~~V~~  256 (363)
                      |++|..
T Consensus       209 yt~v~~  214 (226)
T 4ag1_A          209 FTRISH  214 (226)
T ss_dssp             EEEHHH
T ss_pred             EEEhHH
Confidence            999865

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=301.12  Aligned_cols=214  Identities=19%  Similarity=0.256  Sum_probs=154.4

Q ss_pred             CCCCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEe
Q psy15989          5 DVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYL   84 (363)
Q Consensus         5 ~~~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~   84 (363)
                      +..||++..   .     |.+|.+++|||||+|+...   ..++||||||+++||||||||+..        ...+.|++
T Consensus        46 ~c~CG~~~~---~-----g~~a~~~~~Pw~v~l~~~~---~~~~CgGtLI~~~~VLTAAHC~~~--------~~~~~V~~  106 (283)
T 3f1s_B           46 QCACGVLTS---E-----KRAPDLQDLPWQVKLTNSE---GKDFCGGVIIRENFVLTTAKCSLL--------HRNITVKT  106 (283)
T ss_dssp             TTCTTCCCC----------------CCTTEEEEECTT---SCEEEEEEEEETTEEEECHHHHTS--------CSSCEEEE
T ss_pred             ccccCcccc---C-----CccccccccCCEEEEEecC---CCeeeccEEecCCEEEEcHHhcCc--------cCceEEEE
Confidence            347887621   1     9999999999999998632   278999999999999999999953        34689999


Q ss_pred             ceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCC
Q psy15989         85 GKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS  164 (363)
Q Consensus        85 G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~  164 (363)
                      |.+++.     ...+.+.|+++++||+|+..+..||||||||++|+.|+++|+|||||.......   .......|. .+
T Consensus       107 G~~~~~-----~~~~~~~v~~i~~Hp~y~~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~---~~~~~~~~~-v~  177 (283)
T 3f1s_B          107 YFNRTS-----QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEH---LLIPRTRGL-LS  177 (283)
T ss_dssp             CTTC-C-----CCCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHH---TTTTTSCEE-EE
T ss_pred             eeeeCC-----CCcEEEEeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccc---cccCCCEEE-EE
Confidence            987653     456889999999999999999999999999999999999999999997541000   001112444 67


Q ss_pred             CccceEEecCeeEEeeeeEEEEeecCeeecccc--------ceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEe
Q psy15989        165 GGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK--------HYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVA  236 (363)
Q Consensus       165 G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~  236 (363)
                      |||..  .  ......|+...+++++...|...        +.++... ...|.|||||||++..+++|+|+||+|++  
T Consensus       178 GwG~~--~--~~~~~~L~~~~v~~~~~~~C~~~~~~~~~~~~~Ca~~~-~~~~~gDSGgPlv~~~~~~~~l~GIvS~g--  250 (283)
T 3f1s_B          178 GWARN--G--TDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSS-VAAMHWMDGSVVTREHRGSWFLTGVLGSQ--  250 (283)
T ss_dssp             ECBCC-----------CEEEEEEEECHHHHHHHHTSCCCTTEEEEECS-SCGGGBCTTCEEEEECSSCEEEEEEECCC--
T ss_pred             ECCCC--C--CCCCceeeEEEEeEeCHHHHhhhhcCCCCCCeEcccCC-CCCCCCCCCCcEEEEECCEEEEEEEEEeC--
Confidence            88861  1  11245577888999999999643        3344432 34667899999999989999999999983  


Q ss_pred             cCcceecCCCcceEEEeeeEE
Q psy15989        237 RDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       237 ~~g~~~c~~~~~~v~~~V~~i  257 (363)
                         . +|....+.+|++|..+
T Consensus       251 ---~-c~~~~~p~vyt~V~~y  267 (283)
T 3f1s_B          251 ---P-VGGQAHMVLVTKVSRY  267 (283)
T ss_dssp             ---S-GGGCSSEEEEEEGGGG
T ss_pred             ---C-CCCCCcceEEEEhHHh
Confidence               2 4566678999998764

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=5.3e-41  Score=292.30  Aligned_cols=202  Identities=26%  Similarity=0.369  Sum_probs=157.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+..          ...|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGsLIs~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~--~~~~   64 (237)
T 2zch_P            1 IVGGWECEKHSQPWQVLVASRG----RAVCGGVLVHPQWVLTAAHCIRN----------KSVILLGRHSLFHPE--DTGQ   64 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEESSS----SEEEEEEEEETTEEEECGGGCCS----------SCEEEESCSBSSSCC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEeeCC----CeEEEEEEecCCEEEEcHHhcCC----------CceEEEecccccCCC--CCcE
Confidence            7999999999999999997543    78999999999999999999964          246899998876543  4568


Q ss_pred             eeeeeEEEECCCCCCCCC-----------CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccc
Q psy15989        100 NKQVKRVHIYPTFNSSNY-----------LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM  168 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~-----------~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~  168 (363)
                      .+.|+++++||+|+....           .||||||+|++|+.|++.|+|||||....       ..+ ..|. .+|||.
T Consensus        65 ~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~~-------~~~-~~~~-v~GwG~  135 (237)
T 2zch_P           65 VFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEP-------ALG-TTCY-ASGWGS  135 (237)
T ss_dssp             EEEEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-------CTT-CEEE-EEESCC
T ss_pred             EEEEEEEecCCCcchhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCCC-------CCC-CEEE-EEeCCc
Confidence            899999999999987654           78999999999999999999999998654       112 2454 678886


Q ss_pred             eEEecCeeEEeeeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecC
Q psy15989        169 VFKIDSAWYLRGIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARD  238 (363)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~  238 (363)
                      ....+. .....|+...+++.+...|...        +.|...  ...+.|.|||||||++..    +|+||+|++    
T Consensus       136 ~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g----  206 (237)
T 2zch_P          136 IEPEEF-LTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG----VLQGITSWG----  206 (237)
T ss_dssp             SSSSSC-CCCSBCEEEEEEEECHHHHHHHCSSBCCTTEEEEECTTCSCBCCTTCTTCEEESSS----SEEEEEEEC----
T ss_pred             cCCCCC-cCCcccEEeEEEEeCHHHhcccccCCCCceEEeecCCCCCCcccCCCccCeEEECC----EEEEEEEeC----
Confidence            532211 1134567788888888889642        345442  346899999999999853    899999994    


Q ss_pred             cceecC-CCcceEEEeeeE
Q psy15989        239 GLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       239 g~~~c~-~~~~~v~~~V~~  256 (363)
                       ...|. ...+.+|++|..
T Consensus       207 -~~~C~~~~~p~vyt~V~~  224 (237)
T 2zch_P          207 -SEPCALPERPSLYTKVVH  224 (237)
T ss_dssp             -CSSTTCTTCCEEEEEGGG
T ss_pred             -cCCCCCCCCCcEEEEHHH
Confidence             33464 467899999875

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=1.2e-40  Score=287.45  Aligned_cols=200  Identities=29%  Similarity=0.440  Sum_probs=156.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+. +   ..++||||||+++||||||||+.          ..+.|++|.+++..    ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~---~~~~CgGtLI~~~~VLTAAHC~~----------~~~~v~~G~~~~~~----~~~~   62 (224)
T 2qxi_A            1 IIDGAPCARGSHPWQVALLS-G---NQLHCGGVLVNERWVLTAAHCKM----------NEYTVHLGSDTLGD----RRAQ   62 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEE-T---TEEEEEEEEEETTEEEECGGGCC----------SCEEEEESCSBTTC----TTSE
T ss_pred             CCCCeECCCCCCCCEEEEee-C---CCeEEEEEEecCCEEEEhHHcCC----------CCcEEEEeeeecCC----CccE
Confidence            78999999999999999953 2   15589999999999999999983          25889999987752    4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|++.|+|||||....       ..+ ..|. .+|||.....+. ....
T Consensus        63 ~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~-~~~~-v~GwG~~~~~~~-~~~~  132 (224)
T 2qxi_A           63 RIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE-------PPG-TTCT-VSGWGTTTSPDV-TFPS  132 (224)
T ss_dssp             EEEECEEEECTTCCTTTCTTCCEEEECSSCCCCBTTBCCCCCCSSCC-------CTT-CEEE-EEESSCSSSSSC-CCCS
T ss_pred             EEEEEEEEECCCCCCCCCcCcEEEEEeCCCCcCCCceeeEECCCCCC-------CCC-CEEE-EEeCCccCCCCC-CCCh
Confidence            89999999999999988999999999999999999999999997654       112 2444 678876532111 1234


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcc
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~  248 (363)
                      .|+...+++++...|...        +.|...  ...+.|.|||||||++..    .|+||+|++     ...|. ...+
T Consensus       133 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g-----~~~C~~~~~p  203 (224)
T 2qxi_A          133 DLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCRG----TLQGLVSWG-----TFPCGQPNDP  203 (224)
T ss_dssp             BCEEEEEEEECHHHHHHHHGGGCCTTEEEEECTTCCCBCCTTCTTCEEEETT----EEEEEEEEC-----CSSSCCTTCC
T ss_pred             hheEEEeeecCHHHhhHHhcCcCCCCeEEecCCCCCCccCCCCccccEEECC----EEEEEEEeC-----CCCCCCCCCC
Confidence            567778888888889642        245542  356899999999999843    799999994     23465 3678


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       204 ~vyt~V~~  211 (224)
T 2qxi_A          204 GVYTQVCK  211 (224)
T ss_dssp             EEEEEGGG
T ss_pred             eEEEEHHH
Confidence            99999865

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=8.7e-41  Score=313.12  Aligned_cols=223  Identities=25%  Similarity=0.444  Sum_probs=169.2

Q ss_pred             CCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEece
Q psy15989          7 SCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGK   86 (363)
Q Consensus         7 ~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~   86 (363)
                      .||.+. .....||+||.+|.+++|||||+|+.      .++||||||+++||||||||+.....    ++..+.|++|.
T Consensus       150 ~CG~~~-~~~~~rIvgG~~a~~~~~Pw~v~l~~------~~~CgGsLIs~~~VLTAAHC~~~~~~----~~~~~~V~~G~  218 (403)
T 1zjk_A          150 VCGLSA-RTTGGQIYGGQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAVYEQKH----DASALDIRMGT  218 (403)
T ss_dssp             CCCCCS-SCCSCCCSSCEECCTTSSTTEEEEEE------SCCEEEEEETTTEEEECHHHHGGGTT----CSTTEEEEESC
T ss_pred             CCCCCC-CCCCccccCCcCCCCCCcCCEeEecc------CCceEEEEecCCEEEEcHHhCCCCCC----CcceEEEEccc
Confidence            799873 23467999999999999999999975      35799999999999999999975321    25679999999


Q ss_pred             ecccccCCCCCceeeeeeEEEECCCCCCC-CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCC
Q psy15989         87 YHQHQFSDEGGVQNKQVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSG  165 (363)
Q Consensus        87 ~~~~~~~~~~~~~~~~V~~i~~hp~y~~~-~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G  165 (363)
                      ++..    +...+.+.|+++++||+|+.. ++.||||||||++|+.|+++|+|||||.......    ......|. .+|
T Consensus       219 ~~~~----~~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~----~~~~~~~~-v~G  289 (403)
T 1zjk_A          219 LKRL----SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESF----MRTDDIGT-ASG  289 (403)
T ss_dssp             SBTT----CSCCEEEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGG----SSTTCEEE-EEE
T ss_pred             cccC----CCCceEEeEEEEEECCCCCCCCCCcccEEEEEeCCcCcCCCceecccCCCcccccc----cCCCCeEE-EEc
Confidence            8632    145688999999999999987 7899999999999999999999999997653100    01112444 678


Q ss_pred             ccceEEecCeeEEeeeeEEEEeecCeeecccc--------------ceEEec--CCCccCcccccceeEEEE--cCccEE
Q psy15989        166 GGMVFKIDSAWYLRGIVSITVARDGLRVCDTK--------------HYVVFT--DVANVCNGDSGGGMVFKI--DSAWYL  227 (363)
Q Consensus       166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~--------------~~~~~~--~~~~~C~gdsGgpl~~~~--~~~~~l  227 (363)
                      ||.+...   .....|+...+++++...|...              +.|+..  ...+.|.|||||||++..  +++|+|
T Consensus       290 WG~~~~~---~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l  366 (403)
T 1zjk_A          290 WGLTQRG---FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFV  366 (403)
T ss_dssp             SCTTSSS---CCCSBCEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEE
T ss_pred             CCcCCCC---ccCcccEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEE
Confidence            8865321   1234577888888898889632              234432  256899999999999975  578999


Q ss_pred             EEEEEEEEecCcceecCC-CcceEEEeeeEE
Q psy15989        228 RGIVSITVARDGLRVCDT-KHYVVFTDVKRV  257 (363)
Q Consensus       228 ~Gi~s~~~~~~g~~~c~~-~~~~v~~~V~~i  257 (363)
                      +||+|++     ...|.. ..+.+|++|..+
T Consensus       367 ~GIvS~g-----~~~C~~~~~p~vyt~V~~y  392 (403)
T 1zjk_A          367 GGIVSWG-----SMNCGEAGQYGVYTKVINY  392 (403)
T ss_dssp             EEEEEEE-----CSCC--CCCCEEEEEGGGG
T ss_pred             EEEEEEC-----CCCCCCCCCCeEEEEHHHH
Confidence            9999995     224653 568999998763

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=1.8e-40  Score=286.34  Aligned_cols=201  Identities=25%  Similarity=0.363  Sum_probs=159.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+.     ..++|+||||+++||||||||+..          .+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-----~~~~C~GtLI~~~~VLTAAhC~~~----------~~~v~~g~~~~~~~~--~~~~   63 (223)
T 4i8h_A            1 IVGGYTCGANTVPYQVSLNS-----GYHFCGGSLINSQWVVSAAHCYKS----------GIQVRLGEDNINVVE--GNEQ   63 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEES-----SSEEEEEEECSSSEEEECGGGCCS----------SCEEEESCSSTTSCC--SCCE
T ss_pred             CCCCEECCCCCCCeEEEecC-----CCcEEEEEEEcCCEEEecHHhCCC----------CcEEEEccccccccC--CCcE
Confidence            78999999999999999972     167899999999999999999853          478999998876544  5567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.|++.++|||||.....       .+ ..|. ..|||.....+. ....
T Consensus        64 ~~~v~~~~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~-------~~-~~~~-v~GwG~~~~~~~-~~~~  133 (223)
T 4i8h_A           64 FISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-------AG-TQCL-ISGWGNTKSSGT-SYPD  133 (223)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCCC-------TT-CEEE-EEESSCCCSSSC-CCCS
T ss_pred             EEEEeEEEECcCCCCCCCcCCEEEEEECCcCcCCCceeceECCCCCCC-------CC-CEEE-EEecccccCCCC-Cccc
Confidence            899999999999999999999999999999999999999999977641       12 2444 578876543221 1234


Q ss_pred             eeeEEEEeecCeeeccccc--------eEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKH--------YVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~--------~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .++...+++++...|...+        .|..  ....+.|.|||||||++..    +|+||+|++     ..++....+.
T Consensus       134 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g-----~~c~~~~~p~  204 (223)
T 4i8h_A          134 VLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWG-----SGCAQKNKPG  204 (223)
T ss_dssp             SCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEEC-----SSSSCTTCCE
T ss_pred             cceEEEeeecCHHHHHHhhCCCCCCCeEeccCCCCCCccCCCCCCCcEEECC----EEEEEEEcC-----CCCCCCCCCe
Confidence            5677888888988896432        3443  3457899999999999854    899999994     3334456789


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       205 vyt~v~~  211 (223)
T 4i8h_A          205 VYTKVCN  211 (223)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            9999865

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=3.6e-41  Score=294.41  Aligned_cols=209  Identities=26%  Similarity=0.463  Sum_probs=156.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+.      .++||||||+++||||||||+...... ......+.|++|.+++...   ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~------~~~CgGtLIs~~~VLTAAHC~~~~~~~-~~~~~~~~v~~G~~~~~~~---~~~~   70 (242)
T 2qy0_B            1 IIGGQKAKMGNFPWQVFTNI------HGRGGGALLGDRWILTAAHTLYPKEHE-AQSNASLDVFLGHTNVEEL---MKLG   70 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEES------SSEEEEEEETTTEEEECHHHHSCSSCC-C----CCEEEESCSBHHHH---HHHC
T ss_pred             CCCCEECCCCCCCcEEEEcc------CCCEEEEEEeCCEEEEcHHhccccccc-cCCCceEEEEEeecccccc---cccc
Confidence            79999999999999999964      357999999999999999999743211 1134578899999876432   1235


Q ss_pred             eeeeeEEEECCCCCCC---CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCee
Q psy15989        100 NKQVKRVHIYPTFNSS---NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAW  176 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~---~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~  176 (363)
                      .+.|+++++||+|+..   +..||||||||++|+.|++.|+|||||.... .     ......|. .+|||.....    
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-~-----~~~~~~~~-v~GwG~~~~~----  139 (242)
T 2qy0_B           71 NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT-F-----YDLGLMGY-VSGFGVMEEK----  139 (242)
T ss_dssp             CCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGG-G-----GCTTCEEE-EEECCCCSSS----
T ss_pred             ceeEEEEEECCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCcc-c-----cCCCCeEE-EEeeccCCCc----
Confidence            6789999999999865   6789999999999999999999999997543 1     11122444 5788865321    


Q ss_pred             EEeeeeEEEEeecCeeeccc-------------cceEEecC--CCccCcccccceeEEE--EcCccEEEEEEEEEEecCc
Q psy15989        177 YLRGIVSITVARDGLRVCDT-------------KHYVVFTD--VANVCNGDSGGGMVFK--IDSAWYLRGIVSITVARDG  239 (363)
Q Consensus       177 ~~~~l~~~~~~~~~~~~C~~-------------~~~~~~~~--~~~~C~gdsGgpl~~~--~~~~~~l~Gi~s~~~~~~g  239 (363)
                      ....|+...+++++...|..             .+.|....  ..+.|.|||||||++.  .+++|+|+||+|++     
T Consensus       140 ~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g-----  214 (242)
T 2qy0_B          140 IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWG-----  214 (242)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEEC-----
T ss_pred             CCccceEEEEEEeCHHHHHHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEEC-----
Confidence            23457778888889888963             22344432  5689999999999996  36789999999994     


Q ss_pred             ceecCCCcceEEEeeeE
Q psy15989        240 LRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       240 ~~~c~~~~~~v~~~V~~  256 (363)
                      . .|.. .+.+|++|..
T Consensus       215 ~-~C~~-~~~vyt~V~~  229 (242)
T 2qy0_B          215 I-GCSR-GYGFYTKVLN  229 (242)
T ss_dssp             S-SSSS-SCEEEEEGGG
T ss_pred             C-CcCC-CCcEEEEHHH
Confidence            2 4664 4789999875

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=1.7e-40  Score=286.63  Aligned_cols=203  Identities=26%  Similarity=0.398  Sum_probs=156.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+..+    .++||||||+++||||||||+...      ....+.|++|.+++.     ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLI~~~~VLTAAHC~~~~------~~~~~~v~~G~~~~~-----~~~~   65 (224)
T 1pq7_A            1 IVGGTSASAGDFPFIVSISRNG----GPWCGGSLLNANTVLTAAHCVSGY------AQSGFQIRAGSLSRT-----SGGI   65 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECHHHHTTS------CGGGEEEEESCSBSS-----SSSE
T ss_pred             CCCCEECCCCCcCeEEEEEECC----CeEEEEEEecCCEEEEcHHccCCC------CCCceEEEeCcceec-----CCCE
Confidence            7899999999999999998542    789999999999999999999753      346799999998764     4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..  .||||||||++|+.|++.++|||||......     ..+ ..|. .+|||.....+. ....
T Consensus        66 ~~~v~~i~~hp~y~~~--~~DiALl~L~~~~~~~~~v~picL~~~~~~~-----~~g-~~~~-v~GwG~~~~~~~-~~~~  135 (224)
T 1pq7_A           66 TSSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGSDP-----VAG-SSAT-VAGWGATSEGGS-STPV  135 (224)
T ss_dssp             EECEEEEEECTTCBTT--BTCCEEEEESSCCCCBTTBCCCCBCCTTCCC-----CTT-CEEE-EEESCCSSTTCS-CCCS
T ss_pred             EEEEEEEEECCCCCCC--CCCEEEEEeCCCCcCCCcccceecCCcccCC-----CCC-CEEE-EEecCCcCCCCC-cccc
Confidence            8999999999999876  8999999999999999999999999533210     112 3454 678876532211 1234


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCc
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKH  247 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~  247 (363)
                      .|+...+++++...|...         +.|..  ....+.|.|||||||++. ++  +|+||+|++     . .|. ...
T Consensus       136 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~g--~l~Gi~S~g-----~-~C~~~~~  206 (224)
T 1pq7_A          136 NLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDS-SN--TLIGAVSWG-----N-GCARPNY  206 (224)
T ss_dssp             BCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEECT-TC--CEEEEEEEC-----S-SSSCTTC
T ss_pred             eeeEeEEEEEcHHHhhHhhcCCCCCCCeEEeecCCCCCCCCcCCCCcceECc-CC--eEEEEEEeC-----C-CCCCCCC
Confidence            567788888888889632         23443  235789999999999985 33  899999994     3 365 467


Q ss_pred             ceEEEeeeE
Q psy15989        248 YVVFTDVKR  256 (363)
Q Consensus       248 ~~v~~~V~~  256 (363)
                      +.+|++|..
T Consensus       207 p~vyt~V~~  215 (224)
T 1pq7_A          207 SGVYASVGA  215 (224)
T ss_dssp             CEEEEETTT
T ss_pred             CeEEEEHHH
Confidence            899999865

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=2e-40  Score=289.67  Aligned_cols=210  Identities=26%  Similarity=0.462  Sum_probs=161.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+  .    .++||||||+++||||||||+....    .....+.|++|.++...    ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~--~----~~~CgGtLI~~~~VLTAAhC~~~~~----~~~~~~~v~~g~~~~~~----~~~~   66 (242)
T 3tvj_B            1 IYGGQKAKPGDFPWQVLIL--G----GTTAAGALLYDNWVLTAAHAVYEQK----HDASALDIRMGTLKRLS----PHYT   66 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEE--S----SEEEEEEEETTTEEEECHHHHSTTT----TCSSCCEEEESCSBTTC----SCCE
T ss_pred             CcCCeeCCCCCCCCEEEEe--c----CCcEEEEEecCCEEEECHHHCCCCC----CCcceEEEEeccccccC----cccc
Confidence            7899999999999999997  2    6899999999999999999996531    14567899999987653    3347


Q ss_pred             eeeeeEEEECCCCCC-CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEE
Q psy15989        100 NKQVKRVHIYPTFNS-SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL  178 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~-~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~  178 (363)
                      .+.|+++++||+|+. .+..||||||||++|+.|+++|+|||||.......    ......|. .+|||.+...   ...
T Consensus        67 ~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~----~~~~~~~~-~~GwG~~~~~---~~~  138 (242)
T 3tvj_B           67 QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESF----MRTDDIGT-ASGWGLTQRG---FLA  138 (242)
T ss_dssp             EEEEEEEEECTTCCTTSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGGG----SCTTCEEE-EEESCCCTTS---SCC
T ss_pred             eeeEEEEEeCCCCCCCCCCcCcEEEEEECCccccCCCEecCCcCCCccccc----ccCCCEEE-EEEeCCCCCC---CcC
Confidence            888999999999987 66889999999999999999999999997653100    11122444 5778764321   123


Q ss_pred             eeeeEEEEeecCeeecccc--------------ceEEe--cCCCccCcccccceeEEEE--cCccEEEEEEEEEEecCcc
Q psy15989        179 RGIVSITVARDGLRVCDTK--------------HYVVF--TDVANVCNGDSGGGMVFKI--DSAWYLRGIVSITVARDGL  240 (363)
Q Consensus       179 ~~l~~~~~~~~~~~~C~~~--------------~~~~~--~~~~~~C~gdsGgpl~~~~--~~~~~l~Gi~s~~~~~~g~  240 (363)
                      ..|+...+++++...|...              +.|..  ....+.|.|||||||++..  +++|+|+||+|++     .
T Consensus       139 ~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g-----~  213 (242)
T 3tvj_B          139 RNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWG-----S  213 (242)
T ss_dssp             SBCEEEEEEBCCHHHHHHHHHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEE-----E
T ss_pred             ccceEEeeeEEcHHHHHHhhccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeC-----C
Confidence            4577788889999899642              23443  2347899999999999974  6789999999994     2


Q ss_pred             eecC-CCcceEEEeeeE
Q psy15989        241 RVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       241 ~~c~-~~~~~v~~~V~~  256 (363)
                      ..|. ...+.+|++|..
T Consensus       214 ~~C~~~~~p~vyt~V~~  230 (242)
T 3tvj_B          214 MNCGEAGQYGVYTKVIN  230 (242)
T ss_dssp             SSTTCTTCCEEEEEGGG
T ss_pred             CCCCCCCCCeEEEEHHH
Confidence            3454 456899999865

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=2.4e-40  Score=286.80  Aligned_cols=207  Identities=26%  Similarity=0.347  Sum_probs=159.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+........++||||||+++||||||||+.+        ...+.|++|.++...     ..+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~--------~~~~~v~~G~~~~~~-----~~~   67 (230)
T 2hlc_A            1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD--------AVSVVVYLGSAVQYE-----GEA   67 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTT--------EEEEEEEESCSBTTC-----CSE
T ss_pred             CCCCeECCCCCCCcEEEEEEEecCCCCEEEEEEEeeCCEEEECHHHCCC--------CcceEEEEeeeecCC-----CCe
Confidence            7899999999999999998754334479999999999999999999963        356899999987653     237


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|+ |+.|++.|+|||||.......    ......|. .+|||......     .
T Consensus        68 ~~~v~~i~~hp~y~~~~~~~DiALl~L~-~~~~~~~v~picLp~~~~~~~----~~~~~~~~-v~GwG~~~~~~-----~  136 (230)
T 2hlc_A           68 VVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEELNN----KFENIWAT-VSGWGQSNTDT-----V  136 (230)
T ss_dssp             EEECSEEEECTTCBTTTTBTCCEEEECS-CCCCCSSCCCCBCCCGGGGGC----CCTTCEEE-EEESSCCSSCC-----C
T ss_pred             EEEEEEEEECCCCCCCCccccEEEEEec-CCCcCCcEeeeEcCCcccccc----ccCCcEEE-EEeeeecCCCC-----c
Confidence            8899999999999998999999999999 999999999999987653100    00112344 57787643221     3


Q ss_pred             eeeEEEEeecCeeeccccc---------eEEe-cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKH---------YVVF-TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~---------~~~~-~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .++...+.+++...|...+         .|.. ....+.|.|||||||++..  .++|+||+|++.    ...|....+.
T Consensus       137 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPl~~~~--~~~l~Gi~S~g~----~~~C~~~~p~  210 (230)
T 2hlc_A          137 ILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPFVLSD--KNLLIGVVSFVS----GAGCESGKPV  210 (230)
T ss_dssp             BCEEEEEEEECHHHHHTTSCTTSSCTTEEEECCTTSCBCCTTCTTCEEEEGG--GTEEEEEEEECC----TTCTTSCCCE
T ss_pred             eeEEEEEEEeCHHHhhhhhCCCcccCCeEEecCCCCCCcCCCCCCCeeEECc--CCEEEEEEEEeC----CCCCCCCCCC
Confidence            4566777788888886432         2333 3456899999999999864  459999999942    1357777789


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       211 vyt~V~~  217 (230)
T 2hlc_A          211 GFSRVTS  217 (230)
T ss_dssp             EEEEGGG
T ss_pred             EEEEhHH
Confidence            9999875

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=3.2e-40  Score=286.97  Aligned_cols=200  Identities=25%  Similarity=0.397  Sum_probs=157.0

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+.      .++||||||+++||||||||+.          ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~------~~~CgGsLIs~~~VLTAAHC~~----------~~~~v~~G~~~~~~~~--~~~~   62 (235)
T 1ton_A            1 IVGGYKCEKNSQPWQVAVIN------EYLCGGVLIDPSWVITAAHCYS----------NNYQVLLGRNNLFKDE--PFAQ   62 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES------SSEEEEEEEETTEEEECGGGCC----------SCCEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCcCcEEEEcc------CCeEEEEEecCCEEEEcHHhCC----------CCcEEEeCcccccCCC--Ccce
Confidence            78999999999999999974      2789999999999999999984          2468999999875433  4568


Q ss_pred             eeeeeEEEECCCCCC-----------CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccc
Q psy15989        100 NKQVKRVHIYPTFNS-----------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM  168 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~-----------~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~  168 (363)
                      .+.|+++++||+|+.           .+..||||||+|++|+.|++.|+|||||....       ..+ ..|. .+|||.
T Consensus        63 ~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~-~~~~-v~GwG~  133 (235)
T 1ton_A           63 RRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEP-------KVG-STCL-ASGWGS  133 (235)
T ss_dssp             EECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCC-------CTT-CEEE-EEESSC
T ss_pred             EEEEEEEEeCCCCcccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCCC-------CCC-CEEE-EEecCC
Confidence            899999999999987           67889999999999999999999999997654       112 3454 678876


Q ss_pred             eEEecCeeEEeeeeEEEEeecCeeeccccc--------eEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecC
Q psy15989        169 VFKIDSAWYLRGIVSITVARDGLRVCDTKH--------YVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARD  238 (363)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~--------~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~  238 (363)
                      ...... .....|+...+++.+...|...+        .|...  ...+.|.|||||||++..    +|+||+|++    
T Consensus       134 ~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g----  204 (235)
T 1ton_A          134 TNPSEM-VVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG----VLQGITSGG----  204 (235)
T ss_dssp             SSSSSC-CCCSBCEEEEEEEECGGGCGGGGSTTGGGGEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEECCC----
T ss_pred             CCCCCC-ccCccceEEEEEEeCHHHHHHHhcCcCCCCeEeeccCCCCCcCCCCCCccccEECC----EEEEEEeeC----
Confidence            532211 12345777888888999997532        35543  356899999999999842    899999984    


Q ss_pred             cceecC-CCcceEEEeeeE
Q psy15989        239 GLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       239 g~~~c~-~~~~~v~~~V~~  256 (363)
                       ...|. ...+.+|++|..
T Consensus       205 -~~~C~~~~~p~vyt~V~~  222 (235)
T 1ton_A          205 -ATPCAKPKTPAIYAKLIK  222 (235)
T ss_dssp             -CSSCSCTTCCEEEEEGGG
T ss_pred             -CCCCCCCCCCeEEEEHHH
Confidence             23465 367899999875

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=8.6e-40  Score=285.14  Aligned_cols=205  Identities=23%  Similarity=0.341  Sum_probs=160.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+ +|||||+|+..+    .++||||||+++||||||||+...      ....+.|++|.+++....+....+
T Consensus         1 IvgG~~a~~-~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~~~------~~~~~~v~~G~~~~~~~~~~~~~~   69 (240)
T 1si5_H            1 VVNGIPTRT-NIGWMVSLRYRN----KHICGGSLIKESWVLTARQCFPSR------DLKDYEAWLGIHDVHGRGDEKCKQ   69 (240)
T ss_dssp             CBSCEECSS-CCTTEEEEEESS----SEEEEEEEEETTEEEEEGGGCSSS------CGGGEEEEESCSBSSCSTTTTTCE
T ss_pred             CCCCeeCCC-CCCeEEEEEeCC----CeEEEEEEeeCCEEEEhHHhcCCC------CCccEEEEEeeeecCCCCCCCcce
Confidence            789999999 999999998753    789999999999999999999753      256799999999886553335568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|++++.||+      .||||||+|++|+.|+++|+|||||.....      ......|. .+|||......   ...
T Consensus        70 ~~~v~~~~~~p~------~~DiALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~---~~~  133 (240)
T 1si5_H           70 VLNVSQLVYGPE------GSDLVLMKLARPAVLDDFVSTIDLPNYGST------IPEKTSCS-VYGWGYTGLIN---YDG  133 (240)
T ss_dssp             EEEEEEEEECSS------TTCEEEEEESSCCCCSSSCCCCBCCCTTCC------CCTTCEEE-EEESSCCCCSS---CCC
T ss_pred             EEEEEEEEcCCC------CCcEEEEEECCccccCCceeccCcCCcCCC------CCCCCEEE-EEEeCCCCCCC---CCC
Confidence            899999999986      689999999999999999999999976431      11223454 67888653322   123


Q ss_pred             eeeEEEEeecCeeeccccc----------eEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CC
Q psy15989        180 GIVSITVARDGLRVCDTKH----------YVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TK  246 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~----------~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~  246 (363)
                      .|+...+++++...|...+          .|....  ..+.|.|||||||++..+++|+|+||+|++     . .|. ..
T Consensus       134 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g-----~-~C~~~~  207 (240)
T 1si5_H          134 LLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPG-----R-GCAIPN  207 (240)
T ss_dssp             BCEEEEEEEECGGGTCC-------CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSC-----S-CSSCTT
T ss_pred             eeEEEEEeecCHHHhhhhhcCCccCCCCEEeecCCCCCCEeccCCCCCcEEEEECCcEEEEEEEEEC-----C-CCCCCC
Confidence            5677888888888997533          233322  468999999999999999999999999984     2 354 46


Q ss_pred             cceEEEeeeEE
Q psy15989        247 HYVVFTDVKRV  257 (363)
Q Consensus       247 ~~~v~~~V~~i  257 (363)
                      .+.+|++|..+
T Consensus       208 ~p~vyt~V~~y  218 (240)
T 1si5_H          208 RPGIFVRVAYY  218 (240)
T ss_dssp             CCEEEEEGGGG
T ss_pred             CCcEEEEHHHH
Confidence            78999998763

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=6.7e-40  Score=282.36  Aligned_cols=208  Identities=27%  Similarity=0.374  Sum_probs=161.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+.... ...++||||||+++||||||||+...      ....+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-~~~~~CgGtLIs~~~VLTAAHC~~~~------~~~~~~v~~G~~~~~~~~--~~~~   71 (221)
T 1fuj_A            1 IVGGHEAQPHSRPYMASLQMRGN-PGSHFCGGTLIHPSFVLTAAHCLRDI------PQRLVNVVLGAHNVRTQE--PTQQ   71 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTB-TTCCCEEEEEEETTEEEECGGGGSSS------CGGGEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCcCCEEEEEEecC-CCCEEEEEEEecCCEEEEchHhcCcC------CCCceEEEEeeeeccCCC--CceE
Confidence            78999999999999999987532 12688999999999999999999753      245799999999876543  5578


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++| +|+..+..||||||+|++|+.|++.++|||||.....      ......|. .+|||.....+.  ...
T Consensus        72 ~~~v~~i~~h-~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~------~~~~~~~~-~~GwG~~~~~~~--~~~  141 (221)
T 1fuj_A           72 HFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQP------VPHGTQCL-AMGWGRVGAHDP--PAQ  141 (221)
T ss_dssp             EEEEEEEEEC-CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCC------CCTTCEEE-EEESSBSCSSSC--BCS
T ss_pred             EEEEEEEEeC-CCCCCCCcccEEEEEeCCccccCCcceeeECCCCcCC------CCCCCEEE-EEEeCCCCCCCC--HHH
Confidence            8999999999 9999889999999999999999999999999976641      11223455 678876532211  123


Q ss_pred             eeeEEEEeecCeeeccccceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCC-CcceEEEeeeE
Q psy15989        180 GIVSITVARDGLRVCDTKHYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT-KHYVVFTDVKR  256 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~-~~~~v~~~V~~  256 (363)
                      .|+...+++. ...|.....|....  ..+.|.|||||||++..    +|+||+|+..     ..|.. ..+.+|++|..
T Consensus       142 ~l~~~~~~~~-~~~C~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~s~~~-----~gC~~~~~p~vyt~v~~  211 (221)
T 1fuj_A          142 VLQELNVTVV-TFFCRPHNICTFVPRRKAGICFGDSGGPLICDG----IIQGIDSFVI-----WGCATRLFPDFFTRVAL  211 (221)
T ss_dssp             BCEEEEEEEE-CTTCCTTEEEEECSSSSCBCCTTCTTCEEEETT----EEEEEEEECS-----SSTTCSSSCEEEEEGGG
T ss_pred             HhhcccceEE-eeecCCceeeeccCCCCCCCCCCCCCCeeEECC----EEeEEEEEec-----cCCCCCCCCcEEEeHHH
Confidence            4566677777 67898777777643  56899999999999843    8999999842     12654 56899999865

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=285.25  Aligned_cols=206  Identities=25%  Similarity=0.392  Sum_probs=157.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||+   +++|||||+|+...   ..++||||||+++||||||||+....    .+...+.|++|.+++....++...+
T Consensus         1 IvgG~---~~~~Pw~v~l~~~~---~~~~CgGtLI~~~~VLTAAHC~~~~~----~~~~~~~v~~G~~~~~~~~~~~~~~   70 (234)
T 2asu_B            1 VVGGH---PGNSPWTVSLRNRQ---GQHFCGGSLVKEQWILTARQCFSSCH----MPLTGYEVWLGTLFQNPQHGEPSLQ   70 (234)
T ss_dssp             CBSCE---ECCCTTEEEEECTT---SCEEEEEEEEETTEEEEEGGGSSCTT----CCCTTCEEEESCSBSSCCTTCTTCE
T ss_pred             CCCcc---cCCCcceEEeeccC---CCEEEEEEEEeCCEEEECHHHcCCCC----CCcccEEEEEeeeeccCCCCCCceE
Confidence            78998   68999999998642   27899999999999999999996532    1356789999999876542235668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+      .||||||+|++|+.|+++|+|||||.....      ......|. .+|||.+.....   ..
T Consensus        71 ~~~v~~i~~hp~------~~DiALl~L~~~v~~~~~v~picLp~~~~~------~~~~~~~~-v~GwG~~~~~~~---~~  134 (234)
T 2asu_B           71 RVPVAKMVCGPS------GSQLVLLKLERSVTLNQRVALICLPPEWYV------VPPGTKCE-IAGWGETKGTGN---DT  134 (234)
T ss_dssp             EEEEEEEEECST------TCCEEEEEESSCCCCSSSSCCCBCCCTTCC------CCTTCEEE-EEESSCCTTSSC---TT
T ss_pred             EEEEEEEecCCC------CCCeEEEEeCCcCcCCCcEeccCCCCcccc------CCCCCEEE-EEeCCccCCCCC---Cc
Confidence            899999999997      479999999999999999999999976531      11123454 678876532211   23


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcc
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~  248 (363)
                      .|+...+++++...|...        +.|...  ...+.|.|||||||++..+++|+|+||+|++     . .|. ...+
T Consensus       135 ~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g-----~-~C~~~~~p  208 (234)
T 2asu_B          135 VLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPN-----R-VCARSRWP  208 (234)
T ss_dssp             BCEEEEEEEECHHHHHHHTTTCCCTTEEEECCCSSCCBCCTTCTTCEEEEEETTEEEEEEEECCC-----S-SSSCTTCC
T ss_pred             cceEEEeeEEcHHHcccccCCccCcceEeecCCCCCCeeccCCCCCceEEEECCeEEEEEEEEcC-----C-CCCCCCCC
Confidence            467778888888889632        234432  2468999999999999999999999999984     3 354 4678


Q ss_pred             eEEEeeeEE
Q psy15989        249 VVFTDVKRV  257 (363)
Q Consensus       249 ~v~~~V~~i  257 (363)
                      .+|++|..+
T Consensus       209 ~vyt~V~~~  217 (234)
T 2asu_B          209 AVFTRVSVF  217 (234)
T ss_dssp             EEEEEGGGS
T ss_pred             eEEEEHHHH
Confidence            999998763

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=2.3e-40  Score=302.35  Aligned_cols=216  Identities=26%  Similarity=0.425  Sum_probs=154.8

Q ss_pred             CCCccccC-CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEec
Q psy15989          7 SCGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG   85 (363)
Q Consensus         7 ~CG~~~~~-~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G   85 (363)
                      .||++..+ ....||+||.+|.+++|||||+|.       .++||||||+++||||||||+...        ....|++|
T Consensus        69 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~-------~~~CgGsLIs~~~VLTAAHC~~~~--------~~~~v~~G  133 (333)
T 1elv_A           69 VCGVPREPFEEKQRIIGGSDADIKNFPWQVFFD-------NPWAGGALINEYWVLTAAHVVEGN--------REPTMYVG  133 (333)
T ss_dssp             CCSCCSSCC-----CBTCEECCGGGSTTEEEEE-------TTEEEEEEEETTEEEECHHHHTTC--------SSCCEECS
T ss_pred             CcCCCCCcccccceeecCcccCCCCcCeEEEec-------CCceeEEEecCCEEEehhheeCCC--------CCCeEEEe
Confidence            69987322 245799999999999999999993       237999999999999999999753        22378999


Q ss_pred             eecccccCCCCCceeeee---eEEEECCCCCC-------CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeee
Q psy15989         86 KYHQHQFSDEGGVQNKQV---KRVHIYPTFNS-------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE  155 (363)
Q Consensus        86 ~~~~~~~~~~~~~~~~~V---~~i~~hp~y~~-------~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~  155 (363)
                      .+++..    ...+.+.|   +++++||+|+.       .++.||||||||++|+.|+++|+|||||..... ..   ..
T Consensus       134 ~~~~~~----~~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~-~~---~~  205 (333)
T 1elv_A          134 STSVQT----SRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSD-YN---LM  205 (333)
T ss_dssp             CSBCC-----------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGG-GC---CC
T ss_pred             eeeccc----CccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCccc-cc---cc
Confidence            987632    22345555   99999999984       567899999999999999999999999976531 00   01


Q ss_pred             ceeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccc-----------------eEEe-cCCCccCccccccee
Q psy15989        156 GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH-----------------YVVF-TDVANVCNGDSGGGM  217 (363)
Q Consensus       156 ~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~-----------------~~~~-~~~~~~C~gdsGgpl  217 (363)
                      ....|. .+|||.+....   ....|+...+++++...|...+                 .|+. ....+.|.|||||||
T Consensus       206 ~g~~~~-v~GWG~t~~~~---~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~~~~~C~GDSGGPL  281 (333)
T 1elv_A          206 DGDLGL-ISGWGRTEKRD---RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAF  281 (333)
T ss_dssp             TTCEEE-EEESCCCSSCS---SCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECSTTCBCCTTCTTCEE
T ss_pred             CCcEEE-EEECcCcCCCC---cCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCCCCCcCcCcCCCce
Confidence            123454 67888653321   2345777888888888886432                 2333 235689999999999


Q ss_pred             EEEE--cC-ccEEEEEEEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        218 VFKI--DS-AWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       218 ~~~~--~~-~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      ++..  ++ +|+|+||+||+     . .|..  +.+|++|..+
T Consensus       282 ~~~~~~~~~~~~l~GIvS~g-----~-~C~~--~~vyt~V~~y  316 (333)
T 1elv_A          282 AVQDPNDKTKFYAAGLVSWG-----P-QCGT--YGLYTRVKNY  316 (333)
T ss_dssp             EEECSSCTTCEEEEEEEEEC-----S-STTS--EEEEEEGGGG
T ss_pred             EEEECCCCcEEEEEEEEeeC-----C-CCCC--CcEEeEHHHH
Confidence            9975  34 89999999994     2 4663  7899998763

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=1.8e-40  Score=310.77  Aligned_cols=223  Identities=26%  Similarity=0.447  Sum_probs=162.0

Q ss_pred             CCCccccC-CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEec
Q psy15989          7 SCGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG   85 (363)
Q Consensus         7 ~CG~~~~~-~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G   85 (363)
                      .||++..+ ....||+||.+|.+++|||||+|..      .++||||||+++||||||||+....... .....+.|++|
T Consensus       144 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~------~~~CgGsLIs~~~VLTAAHC~~~~~~~~-~~~~~~~v~~G  216 (399)
T 1gpz_A          144 VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNI------HGRGGGALLGDRWILTAAHTLYPKEHEA-QSNASLDVFLG  216 (399)
T ss_dssp             CCSCCSSCCCSSCCCCSCEECCTTSSTTEEEEES------SSEEEEEEETTTEEEECGGGTSCTTC------CCCEEEES
T ss_pred             CCCCcCCcccCCCEEECCEECCCCCCCCEEEECC------CCCeEEEEeCCCEEEeChhccccccccc-CCcceEEEEec
Confidence            69976322 2357999999999999999999853      3469999999999999999997532111 12356789999


Q ss_pred             eecccccCCCCCceeeeeeEEEECCCCCCC---CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecC
Q psy15989         86 KYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNG  162 (363)
Q Consensus        86 ~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~---~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g  162 (363)
                      .+++....   ..+.+.|++|++||+|+..   ++.||||||||++|+.|+++|+|||||.... .     ......|. 
T Consensus       217 ~~~~~~~~---~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-~-----~~~~~~~~-  286 (399)
T 1gpz_A          217 HTNVEELM---KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT-F-----YDLGLMGY-  286 (399)
T ss_dssp             CSBHHHHH---HTCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGG-G-----GCTTCEEE-
T ss_pred             cccccccc---cccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCcc-c-----cCCCCEEE-
Confidence            98764321   1246789999999999753   5679999999999999999999999997653 1     11122454 


Q ss_pred             CCCccceEEecCeeEEeeeeEEEEeecCeeeccccc-------------eEEec--CCCccCcccccceeEEEE--cCcc
Q psy15989        163 DSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH-------------YVVFT--DVANVCNGDSGGGMVFKI--DSAW  225 (363)
Q Consensus       163 ~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~-------------~~~~~--~~~~~C~gdsGgpl~~~~--~~~~  225 (363)
                      .+|||.+...    ....|+...+++++...|...+             .|+..  ...+.|.|||||||++..  +++|
T Consensus       287 v~GwG~~~~~----~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~  362 (399)
T 1gpz_A          287 VSGFGVMEEK----IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRW  362 (399)
T ss_dssp             EEECC---------CCSBCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEE
T ss_pred             EEccCCCCCc----cCccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeE
Confidence            6888875431    2345778888888888996432             23332  246899999999999876  5789


Q ss_pred             EEEEEEEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        226 YLRGIVSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       226 ~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      +|+||+||+     . .|.. .+.+|++|..+
T Consensus       363 ~l~GivS~g-----~-~C~~-~~~vyt~V~~y  387 (399)
T 1gpz_A          363 VATGIVSWG-----I-GCSR-GYGFYTKVLNY  387 (399)
T ss_dssp             EEEEEECCC-----T-TTTT-TEEEEEEGGGG
T ss_pred             EEEEEEEeC-----C-CcCC-CCeEEEEhHHh
Confidence            999999994     2 3654 47999998763

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=4.2e-40  Score=285.35  Aligned_cols=202  Identities=23%  Similarity=0.374  Sum_probs=157.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+. +    .++||||||+++||||||||+..          .+.|++|.+++.... +...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~----~~~CgGsLIs~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~-~~~~~   64 (231)
T 2aiq_A            1 VIGGDECNINEHRFLALVYA-N----GSLCGGTLINQEWVLTARHCDRG----------NMRIYLGMHNLKVLN-KDALR   64 (231)
T ss_dssp             CBSCEECCTTSCTTEEEEEE-T----TEEEEEEECSSSEEEECGGGCCS----------SCEEEESCSCTTSCC-TTCEE
T ss_pred             CCCCeECCCCCCCeEEEEEc-C----CCeEEEEEEeCCEEEEcHHcCCC----------CCEEEEecccccccC-CCceE
Confidence            79999999999999999973 2    57899999999999999999853          478999998876432 23457


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+.....||||||||++|+.|++.|+|||||.....       .+ ..|. .+|||.....+. ....
T Consensus        65 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~-------~~-~~~~-v~GwG~~~~~~~-~~~~  134 (231)
T 2aiq_A           65 RFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPS-------VG-SVCR-IMGWGTITSPNA-TLPD  134 (231)
T ss_dssp             ECEEEEECCSSCCSSSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCCC-------TT-CEEE-EEESSCSSSSSC-CCCS
T ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEecCCCCCCCcEEeeECCCCCCC-------CC-CEEE-EEeCCccCCCCC-ccCc
Confidence            789999999999999889999999999999999999999999976651       12 2444 677876432111 1234


Q ss_pred             eeeEEEEeecCeeecccc-------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcce
Q psy15989        180 GIVSITVARDGLRVCDTK-------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~-------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~~  249 (363)
                      .++...+++++...|...       +.|..  ....+.|.|||||||++..    +|+||+|++     ...|. ...+.
T Consensus       135 ~l~~~~~~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g-----~~~C~~~~~p~  205 (231)
T 2aiq_A          135 VPHCANINILDYAVCQAAYKGLAATTLCAGILEGGKDTCKGDSGGPLICNG----QFQGILSVG-----GNPCAQPRKPG  205 (231)
T ss_dssp             SCEEEEEEEECHHHHHHHCTTCCSSEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEEE-----CSSTTCTTCCE
T ss_pred             hhhhccceecchhhhhhhhcCCCcCcEEeccCCCCCcccCCcCCCcEEECC----EEEEEEEEe-----CCCCCCCCCCE
Confidence            566778888888889642       23444  3457899999999999853    899999994     23465 36789


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       206 vyt~V~~  212 (231)
T 2aiq_A          206 IYTKVFD  212 (231)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            9999875

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=4.3e-39  Score=279.82  Aligned_cols=204  Identities=25%  Similarity=0.333  Sum_probs=157.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+...  ...++||||||+++||||||||+.          ..+.|++|.++..... .....
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--~~~~~CgGtLI~~~~VLTAAHC~~----------~~~~v~~g~~~~~~~~-~~~~~   67 (234)
T 3s9c_A            1 VVGGDECNINEHPFLVALYTSA--SSTIHCAGALINREWVLTAAHCDR----------RNIRIKLGMHSKNIRN-EDEQI   67 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT--EEEEEEEEEEEETTEEEECGGGCC----------TTEEEEESCSSSSSCC-TTCEE
T ss_pred             CCCCeeCCCCCCCeEEEEEECC--CCcEEEeeEEeeCCEEEEchhhcC----------CCceEEEeeccccccc-CCcce
Confidence            7899999999999999997642  237899999999999999999985          3588999998876543 13334


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...+.++++||+|+..+..||||||+|++|+.|++.|+|||||.....       .+ ..|. .+|||.+...   ....
T Consensus        68 ~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~~-------~~-~~~~-v~GwG~~~~~---~~~~  135 (234)
T 3s9c_A           68 RVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRG-------VG-SRCR-IMGWGKISTT---TYPD  135 (234)
T ss_dssp             ECEEEEECCSSCSSTTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCCC-------TT-CEEE-EEESSCSBTT---BCCS
T ss_pred             EEeeeEEEeCCCCCCCCCcCceEEEEECCccccCCcccccccCCCCCC-------CC-CeEE-EEeeCCCCCC---CCCc
Confidence            456677778999999899999999999999999999999999987651       12 3455 6788865322   1234


Q ss_pred             eeeEEEEeecCeeeccccc---------eEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCC-Cc
Q psy15989        180 GIVSITVARDGLRVCDTKH---------YVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT-KH  247 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~---------~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~-~~  247 (363)
                      .++...+.+++...|...+         .|..  ....+.|.|||||||++..    .|+||+|++     ...|.. ..
T Consensus       136 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~----~l~Gi~S~g-----~~~C~~~~~  206 (234)
T 3s9c_A          136 VPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPLICNG----EMHGIVAGG-----SEPCGQHLK  206 (234)
T ss_dssp             SCEEEEEEEECGGGTTTTCTTSCTTSSEEEEECTTSSCBCCTTCTTCEEEETT----EEEEEEEEC-----CSSTTCTTC
T ss_pred             cccccceEecCHHHhhhcccCCCCCcceEEeecCCCCCccCCCCCCCeEEEeC----CcEEEEEEe-----CCCCCCCCC
Confidence            5677788888888997533         3443  3457899999999999854    699999994     344654 46


Q ss_pred             ceEEEeeeEE
Q psy15989        248 YVVFTDVKRV  257 (363)
Q Consensus       248 ~~v~~~V~~i  257 (363)
                      +.+|++|..+
T Consensus       207 p~vyt~V~~y  216 (234)
T 3s9c_A          207 PAVYTKVFDY  216 (234)
T ss_dssp             CEEEEEGGGG
T ss_pred             CcEEEEhHHh
Confidence            8999998753

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=5.3e-40  Score=318.46  Aligned_cols=223  Identities=23%  Similarity=0.338  Sum_probs=131.4

Q ss_pred             CCCCccccC-CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEe
Q psy15989          6 VSCGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYL   84 (363)
Q Consensus         6 ~~CG~~~~~-~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~   84 (363)
                      ..||.+... ....||+||.+|.+++|||||+|+...    .++||||||+++||||||||+...      ....+.|++
T Consensus       307 ~~CG~~~~~~~~~~rIvgG~~a~~g~~Pw~v~l~~~~----~~~CGGsLIs~~~VLTAAHCv~~~------~~~~~~V~~  376 (565)
T 2xrc_A          307 LSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDAS----GITCGGIYIGGCWILTAAHCLRAS------KTHRYQIWT  376 (565)
T ss_dssp             CCCCC--------------------CCTTBCEEEESS----SCCCCCEEEETTEEEECHHHHTTC------SSCCEEEEC
T ss_pred             cccCCCCCcccCCCceECCEECCCCCCCcEEEEecCC----ceeeeEEEEeCCEEEEChhhcccC------CCcceEEEE
Confidence            479987322 345799999999999999999998533    688999999999999999999753      346789999


Q ss_pred             ceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCC----CccceEecCCCCCCceeeeeeceeee
Q psy15989         85 GKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM----YVRPVCLWDDSTAPLQLSAVEGTSVC  160 (363)
Q Consensus        85 G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~----~v~picL~~~~~~~~~~~~~~~~~~c  160 (363)
                      |.+++.... ....+.+.|++|++||+|+..++.||||||+|++|+.|++    .++|||||.... .     ......|
T Consensus       377 G~~~~~~~~-~~~~~~~~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~-~-----~~~g~~~  449 (565)
T 2xrc_A          377 TVVDWIHPD-LKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPY-L-----FQPNDTC  449 (565)
T ss_dssp             --------------CEEEEEEEEECTTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTT-S-----SCTTCEE
T ss_pred             EEeeccCCC-CCccEEEEEEEEEeCCCCCCCcccccceeeeeccccccccccccceeeeecCCccc-c-----cCCCCEE
Confidence            998765322 1345788999999999999999999999999999999875    689999997654 1     1122345


Q ss_pred             cCCCCccceEEecCeeEEeeeeEEEEeecCeeecccc---------ceEEec--CCCccCcccccceeEEEE-cCccEEE
Q psy15989        161 NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK---------HYVVFT--DVANVCNGDSGGGMVFKI-DSAWYLR  228 (363)
Q Consensus       161 ~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~---------~~~~~~--~~~~~C~gdsGgpl~~~~-~~~~~l~  228 (363)
                      . .+|||.+....   ....|+...+++++.  |...         +.++..  ...+.|.|||||||++.. +++|+|+
T Consensus       450 ~-v~GWG~t~~~~---~~~~L~~~~v~i~~~--C~~~~~~~~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~~lv  523 (565)
T 2xrc_A          450 I-VSGWGREKDNE---RVFSLQWGEVKLISN--CSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVW  523 (565)
T ss_dssp             E-EEC----------------CEEEEEECSC--THHHHTTSCCTTTEEEEEEC----------CCCEEEEECTTCCEEEE
T ss_pred             E-EEeCccCCCCC---ccceeeEEeeeehHH--hHHhhccCcCCCceEEeCCCCCCCccCCCccccceEEEeCCCcEEEE
Confidence            5 78998764422   234466677777663  7531         334432  235899999999999976 6789999


Q ss_pred             EEEEEEEecCcceecC-CCcceEEEeeeEE
Q psy15989        229 GIVSITVARDGLRVCD-TKHYVVFTDVKRV  257 (363)
Q Consensus       229 Gi~s~~~~~~g~~~c~-~~~~~v~~~V~~i  257 (363)
                      ||+||+.      .|. ...+.+|++|..+
T Consensus       524 GIvS~G~------~C~~~~~PgVYTrVs~y  547 (565)
T 2xrc_A          524 GVVSWGE------NCGKPEFPGVYTKVANY  547 (565)
T ss_dssp             EEECC------------CCCCEEEEEGGGG
T ss_pred             EEEeeCC------CCCCCCCCEEEEEHHHH
Confidence            9999952      354 4678999998764

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=1.1e-39  Score=283.68  Aligned_cols=204  Identities=20%  Similarity=0.246  Sum_probs=161.1

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||||+|+...    .++||||||+++||||||||+...      ....+.|++|.+++.     ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLIs~~~VLTAAHC~~~~------~~~~~~v~~G~~~~~-----~~~~   65 (235)
T 3h7t_A            1 IIGGKKSDITKEPWAVGVLVDE----KPFCGGSILTANFVITAAQCVDGT------KPSDISIHYGSSYRT-----TKGT   65 (235)
T ss_dssp             CBTCEECCTTTSTTEEEEEETT----SCCEEEEESSSSEEEECHHHHTTC------CGGGEEEEESCSBSS-----SSSE
T ss_pred             CCCCEECCCCCCCcEEEEecCC----CceEeEEEeeCCEEEECHHHCCCC------CCCeeEEEcCccccc-----cCCc
Confidence            7899999999999999998753    678999999999999999999642      457899999998875     3348


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCC-CccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEE
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM-YVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL  178 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~-~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~  178 (363)
                      .+.|+++++| +|++.+..||||||+|++|+.|++ .++|||||.... .     ......|. .+|||.+...+. ...
T Consensus        66 ~~~v~~i~~h-~y~~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~-~-----~~~~~~~~-v~GwG~~~~~~~-~~~  136 (235)
T 3h7t_A           66 SVMAKKIYIV-RYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLY-D-----PEPDTSVL-VSGWGSTNFKSL-EYS  136 (235)
T ss_dssp             EEEEEEEEEC-SCBTTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTC-C-----CCTTCEEE-EEECCCSSTTCC-CCC
T ss_pred             eeeeeeEEee-ecCCCCCCCCeEEEEeccccccCCccccceecCcccc-C-----CCCCCeEE-EEecCCCCCCCC-chh
Confidence            8999999999 999999999999999999999999 999999997763 1     11223455 678886532210 123


Q ss_pred             eeeeEEEEeecCeeecccc-------------ceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceec
Q psy15989        179 RGIVSITVARDGLRVCDTK-------------HYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC  243 (363)
Q Consensus       179 ~~l~~~~~~~~~~~~C~~~-------------~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c  243 (363)
                      ..|+...+++++...|...             +.|....  ..+.|.|||||||++..    .|+||+|++     . .|
T Consensus       137 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g-----~-~C  206 (235)
T 3h7t_A          137 GDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNG----TLVGVASYI-----S-SM  206 (235)
T ss_dssp             SBCEEEEEEEECHHHHHHHHHTTTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEETT----EEEEEECCC-----T-TC
T ss_pred             HHHhhCCCceeCHHHHHHHhhhcccCccccCCeEecCCCCCCCccccCCCCCceeeCC----eEEEEEEec-----C-CC
Confidence            4577888888888889632             2344432  57899999999999843    599999994     3 37


Q ss_pred             CCCcceEEEeeeEE
Q psy15989        244 DTKHYVVFTDVKRV  257 (363)
Q Consensus       244 ~~~~~~v~~~V~~i  257 (363)
                      ....+.+|++|..+
T Consensus       207 ~~~~p~vyt~v~~~  220 (235)
T 3h7t_A          207 PSEFPSVFLRVGYY  220 (235)
T ss_dssp             CTTSCEEEEEGGGG
T ss_pred             CCCCCceEEEHHHH
Confidence            66778999998753

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=4e-39  Score=280.72  Aligned_cols=206  Identities=24%  Similarity=0.357  Sum_probs=157.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+...  ...++||||||+++||||||||+..          .+.|++|.++..... .....
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--~~~~~CgGtLI~~~~VLTAAHC~~~----------~~~v~~g~~~~~~~~-~~~~~   67 (238)
T 4e7n_A            1 IIGGDECNINEHRFLVALYTSR--SRTLFCGGTLINQEWVLTAAHCDRK----------NFRIKLGMHSKKVPN-EDEQT   67 (238)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT--TCCEEEEEEECSSSEEEECGGGCCS----------SCEEEESCSCSSSCC-TTCEE
T ss_pred             CCCCeeCCCCCcCcEEEEEECC--CCCEEEEEEEecCCEEEEhHHcCCC----------CCeEEeceeeccccC-CCcee
Confidence            7899999999999999997653  2378999999999999999999852          478999998776543 13334


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.++++++||+|+.....||||||+|++|+.|++.|+|||||.....       .+ ..|. ..|||.+..... ....
T Consensus        68 ~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~-------~~-~~~~-v~GwG~~~~~~~-~~~~  137 (238)
T 4e7n_A           68 RVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPS-------VG-SVCR-IMGWGRISPTEG-TYPD  137 (238)
T ss_dssp             ECEEEEECSSTTCCCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCCC-------TT-CEEE-EEESSCSSSSSC-CCCS
T ss_pred             EeeeeeEEcCCCCCCCCCCCcEEEEEeCCCccCCCceeeeeCCCCCCC-------CC-CEEE-EEECCCCCCCCC-CCCc
Confidence            556777888999999999999999999999999999999999987652       12 2444 677876533221 1234


Q ss_pred             eeeEEEEeecCeeeccccc-----------eEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-C
Q psy15989        180 GIVSITVARDGLRVCDTKH-----------YVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-T  245 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~-----------~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~  245 (363)
                      .++...+.+++...|...+           .|..  ....+.|.|||||||++..    .|+||+|++     ...|. .
T Consensus       138 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g-----~~~C~~~  208 (238)
T 4e7n_A          138 VPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNG----QFQGIASWG-----DDPCAQP  208 (238)
T ss_dssp             SCEEEEEEEECGGGGTTTCGGGCCCSCCSEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEEC-----CSSTTCT
T ss_pred             cceEeeccccCHHHHhhhcccccCCCCCCeEEeCCCCCCCccCCCCCCcceEECC----EEEEEEEEe-----CCCCCCC
Confidence            5677788888888997533           2333  3357899999999999854    699999994     34354 3


Q ss_pred             CcceEEEeeeEE
Q psy15989        246 KHYVVFTDVKRV  257 (363)
Q Consensus       246 ~~~~v~~~V~~i  257 (363)
                      ..+.+|++|..+
T Consensus       209 ~~p~vyt~V~~~  220 (238)
T 4e7n_A          209 HKPAAYTKVFDH  220 (238)
T ss_dssp             TCCEEEEESGGG
T ss_pred             CCCeEEEEhHHH
Confidence            678999998753

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=9.6e-39  Score=277.62  Aligned_cols=204  Identities=25%  Similarity=0.353  Sum_probs=155.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+...    .++||||||+++||||||||+..          .+.|++|.++..... .....
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGtLI~~~~VLTAAHC~~~----------~~~v~~g~~~~~~~~-~~~~~   65 (234)
T 3s69_A            1 VIGGDECNINEHRSLVAFFNST----GFFCSGTLINEEWVLTAAHCDNT----------NFQMKLGVHSKKVLN-EDEQT   65 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEECSS----CEEEEEEEEETTEEEECGGGCCS----------SCEEEESCCCSSSCC-TTCEE
T ss_pred             CCCCccCCCCCCceEEEEeeCC----CeEEeEEEeeCCEEEEchhhCCC----------CceEEeccccccccc-CCcce
Confidence            7899999999999999997643    78999999999999999999852          478999998776543 12334


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...++.++.||+|+..+..||||||+|++|+.|++.++|||||.....       .+ ..|. ..|||....... ....
T Consensus        66 ~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~-------~~-~~~~-v~GwG~~~~~~~-~~~~  135 (234)
T 3s69_A           66 RNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPS-------VG-SVCH-IMGWGSITPIKV-TYPD  135 (234)
T ss_dssp             ECEEEEEECTTCCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCCC-------TT-CEEE-EEESSCSSSSSC-CCCS
T ss_pred             eeceEEEECCCccCCCCCcccEEEEeeCCcCCCCCcceeeecCCCCCC-------CC-CEEE-EEECCCCCCCCc-Cccc
Confidence            455666777999999999999999999999999999999999987651       12 3455 678876532211 1234


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCC-Cc
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT-KH  247 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~-~~  247 (363)
                      .++...+.+.+...|...         ..|..  ....+.|.|||||||++..    .|+||+|+     +...|.. ..
T Consensus       136 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~-----g~~~C~~~~~  206 (234)
T 3s69_A          136 VPYCAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPLICNG----QFQGIVSF-----GAHPCGQGLK  206 (234)
T ss_dssp             SCEEEEEEEECHHHHHHHCTTCCTTSCEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEE-----CCSSTTCTTC
T ss_pred             ccceeEEeecCHHHHhhhcccccCCcceEeccCCCCCCccCCCCCccceEEcC----EEEEEEEE-----cccccCCCCC
Confidence            466777888888888642         23443  3357899999999999854    69999999     4444654 46


Q ss_pred             ceEEEeeeEE
Q psy15989        248 YVVFTDVKRV  257 (363)
Q Consensus       248 ~~v~~~V~~i  257 (363)
                      +.+|++|..+
T Consensus       207 p~vyt~V~~~  216 (234)
T 3s69_A          207 PGVYTKVFDY  216 (234)
T ss_dssp             CEEEEEGGGG
T ss_pred             CcEEeeHHHH
Confidence            8999998653

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=4.5e-39  Score=292.03  Aligned_cols=204  Identities=19%  Similarity=0.230  Sum_probs=157.1

Q ss_pred             CeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeee
Q psy15989         23 GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ  102 (363)
Q Consensus        23 G~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~  102 (363)
                      |.+|.+++|||||+|+...   ..++||||||+++||||||||+..        ...+.|++|.+++.     ...+.+.
T Consensus        97 G~~a~~~~~Pw~v~l~~~~---~~~~CgGtLIs~~~VLTAAHC~~~--------~~~~~V~~G~~~~~-----~~~~~~~  160 (317)
T 3h5c_B           97 KRAPDLQDLPWQVKLTNSE---GKDFCGGVIIRENFVLTTAKCSLL--------HRNITVKTYFNRTS-----QDPLMIK  160 (317)
T ss_dssp             CSSCCTTCCTTEEEEECSS---SCEEEEEEEEETTEEEECHHHHHS--------CSSCEEEECTTSCT-----TSCEEEE
T ss_pred             cccCccCCCCcEEEEeccC---CceeeeeEEeeCCEEEEChHhcCc--------CCceEEEEeeecCC-----CCcEEEE
Confidence            8999999999999998543   278999999999999999999953        34689999987654     4568899


Q ss_pred             eeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeee
Q psy15989        103 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIV  182 (363)
Q Consensus       103 V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~  182 (363)
                      |+++++||+|+..+..||||||||++|+.|+++|+|||||.......   .......|. .+|||..  ..  .....|+
T Consensus       161 v~~i~~Hp~y~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~---~~~~~~~~~-v~GwG~~--~~--~~~~~L~  232 (317)
T 3h5c_B          161 ITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEH---LLIPRTRGL-LSGWARN--GT--DLGNSLT  232 (317)
T ss_dssp             EEEEEECTTCBTTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHH---TTTTTSCEE-EEBCCTT--CC--SSSCCCB
T ss_pred             eeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceeCCCcccccc---cccCCCeEE-EEecCCC--CC--CCCccce
Confidence            99999999999999999999999999999999999999987641000   000112344 6788761  11  1234567


Q ss_pred             EEEEeecCeeecccc--------ceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEee
Q psy15989        183 SITVARDGLRVCDTK--------HYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV  254 (363)
Q Consensus       183 ~~~~~~~~~~~C~~~--------~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V  254 (363)
                      ...+++++...|...        +.++.. ....|.|||||||++..+++|+|+||+|++     . .|....+.+|++|
T Consensus       233 ~~~v~~~~~~~C~~~~~~~~~~~~~Ca~~-~~~~~~gDsGgPl~~~~~~~~~l~Gi~S~g-----~-~~~~~~p~vyt~V  305 (317)
T 3h5c_B          233 TRPVTLVEGEECGQVLNVTVTTRTYCERS-SVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-----P-VGGQAHMVLVTKV  305 (317)
T ss_dssp             CCEEEEECHHHHHHHHTCCCCTTEEEEEC-SCCCCCCCTTCEEEEEETTEEEEEEEECCC-----C-SSCCTTEEEEEEG
T ss_pred             EEEEEEECHHHHhhhhcCcCCCceeECCC-CCCCcCCCCCCCEEEecCCEEEEEEEEEEC-----C-CCCCCcceEEEEh
Confidence            778888888889643        234432 234788999999999999999999999983     1 4556678999998


Q ss_pred             eEE
Q psy15989        255 KRV  257 (363)
Q Consensus       255 ~~i  257 (363)
                      ..+
T Consensus       306 ~~y  308 (317)
T 3h5c_B          306 SRY  308 (317)
T ss_dssp             GGC
T ss_pred             HHh
Confidence            753

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=2.8e-38  Score=272.80  Aligned_cols=199  Identities=26%  Similarity=0.383  Sum_probs=153.1

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+        ++||||||+++||||||||+....     ....+.|++|.+++..    ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~--------~~CgGtLI~~~~VLTAAHC~~~~~-----~~~~~~v~~G~~~~~~----~~~~   63 (224)
T 3beu_A            1 VVGGTRAAQGEFPFMVRLS--------MGCGGALYAQDIVLTAAHCVSGSG-----NNTSITATGGVVDLQS----SSAV   63 (224)
T ss_dssp             CBTCEECCTTTSTTEEEET--------TTEEEEEEETTEEEECGGGSCSSE-----EBCCCEEEESCSBTTC----TTCE
T ss_pred             CCCCeECCCCCCCEEEEEC--------CceeEEEeeCCEEEEChhhcCCCC-----CcceEEEEeeEeecCC----CCce
Confidence            7899999999999999994        359999999999999999997531     2456889999987753    3347


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|.++++||+|+..+..||||||||++|+.+    +|+||+.....       .+ ..|. .+|||.....+.  ...
T Consensus        64 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~----~~i~l~~~~~~-------~~-~~~~-v~GwG~~~~~~~--~~~  128 (224)
T 3beu_A           64 KVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ----PTLKIATTTAY-------NQ-GTFT-VAGWGANREGGS--QQR  128 (224)
T ss_dssp             EEEEEEEEECTTCCCGGGSCCCEEEEESSCCCS----CCCEECCSSTT-------SS-SEEE-EEESSCSSTTCC--CCS
T ss_pred             EEEEEEEEeCCCcCCCcCCCCEEEEEeCCCCCC----Ccccccccccc-------CC-CEEE-EEecCccCCCCc--ccc
Confidence            889999999999999889999999999999964    58999865441       12 2444 678876432211  234


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEec--CCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecC-CC
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVFT--DVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCD-TK  246 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~~--~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~-~~  246 (363)
                      .|+...+++++...|...         +.|...  ...+.|.|||||||++.. +++|+|+||+|++.      .|. ..
T Consensus       129 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~------~C~~~~  202 (224)
T 3beu_A          129 YLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGE------GCARKG  202 (224)
T ss_dssp             BCEEEEEEEECHHHHHHHCSSCCCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSCEEEEEEEEEES------SSSCTT
T ss_pred             eeeEeeCcccCHHHhhhhcCCccCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCCEEEEEEeccCC------CCCCCC
Confidence            467778888888889642         234432  346899999999999986 67899999999952      354 46


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .+.+|++|..
T Consensus       203 ~p~vyt~V~~  212 (224)
T 3beu_A          203 KYGVYTEVST  212 (224)
T ss_dssp             CCEEEEEHHH
T ss_pred             CCeEEEEHHH
Confidence            7899999865

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=2.7e-38  Score=314.14  Aligned_cols=222  Identities=28%  Similarity=0.420  Sum_probs=169.9

Q ss_pred             CCCCCccccCC--ccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEE
Q psy15989          5 DVSCGTVVYNK--AQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI   82 (363)
Q Consensus         5 ~~~CG~~~~~~--~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V   82 (363)
                      ..+||++....  ...||+||.+|.+++|||||+|+...   ..++||||||+++||||||||+....     .+..+.|
T Consensus       545 ~~~CG~~~~~~~~~~~RIvGG~~a~~~~~PW~VsL~~~~---~~~~CGGSLIs~~wVLTAAHCv~~~~-----~~~~~~V  616 (791)
T 4dur_A          545 SFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF---GMHFCGGTLISPEWVLTAAHCLEKSP-----RPSSYKV  616 (791)
T ss_dssp             SCCTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTT---SCEEEEEEEEETTEEEECGGGGSSCC-----CGGGCEE
T ss_pred             ccCcCCcccccccCCCceECCEECCCCCCCeEEEEEecC---CCeEEEEEEEeCCEEEECHHHcCCcC-----CCceEEE
Confidence            35799863221  24699999999999999999997543   27899999999999999999996532     3467899


Q ss_pred             EeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecC
Q psy15989         83 YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNG  162 (363)
Q Consensus        83 ~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g  162 (363)
                      ++|.++.....  ...+.+.|.++++||.      .||||||+|++|+.|++.|+|||||.....      ......|. 
T Consensus       617 ~lG~~~~~~~~--~~~q~~~V~~i~~hp~------~nDIALLkL~~pv~~s~~V~PIcLP~~~~~------~~~g~~~~-  681 (791)
T 4dur_A          617 ILGAHQEVNLE--PHVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYV------VADRTECF-  681 (791)
T ss_dssp             EESCCBSSSCC--TTCEEEEEEEEEECTT------CCSCEEEEESSCCCCCSSCCCCBCCCTTCC------CCTTCEEE-
T ss_pred             EeccccccCCC--CccEEEEEEEEECCCC------CCceEEEEecCccccCCceeeeeccCcccc------cCCCCEEE-
Confidence            99999876544  5678899999999997      379999999999999999999999976541      11223455 


Q ss_pred             CCCccceEEecCeeEEeeeeEEEEeecCeeecccc----------ceEEe--cCCCccCcccccceeEEEEcCccEEEEE
Q psy15989        163 DSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGI  230 (363)
Q Consensus       163 ~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi  230 (363)
                      .+|||.+....   ....|+...+.+++...|...          +.++.  ....+.|.|||||||++..+++|+|+||
T Consensus       682 vsGWG~t~~~~---~s~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~LvGI  758 (791)
T 4dur_A          682 ITGWGETQGTF---GAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGV  758 (791)
T ss_dssp             EEECCCC---C---CTTBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEETTEEEEEEE
T ss_pred             EEEeCCCCCCC---CCCeeEEEEEEEeCHHHhhcccccCCCCCCCeEEeccCCCCCCCCCCCcccceEEEeCCeEEEEEE
Confidence            68888754321   123467788888998999743          12332  2346899999999999999999999999


Q ss_pred             EEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        231 VSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       231 ~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      +|+     |..++....+++|++|..+
T Consensus       759 vS~-----G~gC~~~~~PgVYTrVs~y  780 (791)
T 4dur_A          759 TSW-----GLGCARPNKPGVYVRVSRF  780 (791)
T ss_dssp             CCT-----TTCCBBTTBCEEEEEGGGT
T ss_pred             EEe-----CCCCCCCCCCeEEEEHHHH
Confidence            999     4433345678999998753

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=2.1e-38  Score=274.34  Aligned_cols=205  Identities=27%  Similarity=0.301  Sum_probs=159.5

Q ss_pred             cCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceee
Q psy15989         22 YGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNK  101 (363)
Q Consensus        22 gG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~  101 (363)
                      ||.+|.+++|||||+|+.... ...++||||||+++||||||||+...      ....+.|++|.+++...   ...+.+
T Consensus         2 gG~~a~~~~~Pw~v~l~~~~~-~~~~~CgGtLI~~~~VLTAAHC~~~~------~~~~~~v~~g~~~~~~~---~~~~~~   71 (228)
T 3h7o_A            2 GGEKTDIKQVPWTVAVRTYPG-EESLTCGGAILSQWFVLTAAHCVFDQ------KPETIVIQYESTNLWED---PGKSDP   71 (228)
T ss_dssp             CCEECCGGGSTTEEEEEECGG-GCCEEEEEEESSSSEEEECHHHHTTS------CGGGCEEEESCSBTTTB---CCEEEC
T ss_pred             CCccCCcCCCCeEEEEeecCC-CCceEeeeEEeeCCEEEEcHHhcccC------CCCcEEEEecccccccC---CCceee
Confidence            899999999999999987542 12449999999999999999999743      35678999999887643   345888


Q ss_pred             eeeEEEECCCCCCCCCCCCeEEEEeCCcccCCC-CccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEee
Q psy15989        102 QVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM-YVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRG  180 (363)
Q Consensus       102 ~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~-~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~  180 (363)
                      .|+++++| +|+..+..||||||+|++|+.|++ .++|||||.....      ......|. .+|||.....+.  ....
T Consensus        72 ~v~~i~~h-~y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~------~~~~~~~~-v~GwG~~~~~~~--~~~~  141 (228)
T 3h7o_A           72 YVSHVYLS-FYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFR------PKTGSDVL-VSGYGDGQTMDP--KDHD  141 (228)
T ss_dssp             CEEEEEES-SCBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCC------CCTTCEEE-EEECCCSSCSCG--GGGB
T ss_pred             eEEEEEcc-ccCCCCccCCEEEEEECCcccccccccccccCCccccC------CCCCCeeE-EEEEecCCCCCC--cccc
Confidence            99999999 999999999999999999999999 9999999977631      11123444 677775433211  1234


Q ss_pred             eeEEEEeecCeeecccc---------ceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEE
Q psy15989        181 IVSITVARDGLRVCDTK---------HYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF  251 (363)
Q Consensus       181 l~~~~~~~~~~~~C~~~---------~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~  251 (363)
                      |+...+++++...|...         ..|......+.|.|||||||++..    .|+||+|++     . .|....+.+|
T Consensus       142 L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g-----~-~c~~~~p~vy  211 (228)
T 3h7o_A          142 LKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKVGVSLESGDAGDPTVQQD----TLVGVAAYF-----P-KRPEGAPEVF  211 (228)
T ss_dssp             CEEEEEEEECHHHHHHHHTTSCCCSSEEEEECTTCCCCGGGTTCEEEETT----EEEEEECCC-----T-TCCTTCCEEE
T ss_pred             cccceeEEEcHHHHHHHhcCccCCceEEecCCCCCcCCCCCCCCcceecC----eEEEEEeec-----C-cCCCCCCcEE
Confidence            67788888888889632         245555568899999999999843    699999984     2 3666778999


Q ss_pred             EeeeE
Q psy15989        252 TDVKR  256 (363)
Q Consensus       252 ~~V~~  256 (363)
                      ++|..
T Consensus       212 t~v~~  216 (228)
T 3h7o_A          212 TKVGS  216 (228)
T ss_dssp             EEGGG
T ss_pred             EEHHH
Confidence            99875

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=1.3e-37  Score=300.55  Aligned_cols=205  Identities=25%  Similarity=0.401  Sum_probs=137.2

Q ss_pred             CCCCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEe
Q psy15989          5 DVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYL   84 (363)
Q Consensus         5 ~~~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~   84 (363)
                      +..||..        .++|.+|.+++|||||+|+...    .|+||||||+++||||||||+....     ....+.|++
T Consensus       217 ~~~CG~~--------~~~g~~a~~~~~Pw~v~l~~~~----~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~~~~V~~  279 (509)
T 2odp_A          217 DTICGVG--------NMSANASDQERTPWHVTIKPKS----QETCRGALISDQWVLTAAHCFRDGN-----DHSLWRVNV  279 (509)
T ss_dssp             SCCSSCC--------CCCTTSCHHHHCTTEEEEEC--------CEEEEECSSSEEEECGGGC-------------CEEEE
T ss_pred             CcccCCc--------CCCCCccccCCCCcEEEEEeCC----CcEEEEEEEcCCEEEEcHHHcCCCC-----CcceEEEEe
Confidence            4579976        3689999999999999997543    7899999999999999999996521     245689999


Q ss_pred             ceecccccCCCCCceeeeeeEEEECCCCCCC---------CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeee
Q psy15989         85 GKYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE  155 (363)
Q Consensus        85 G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~---------~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~  155 (363)
                      |.++.      ...+.+.|+++++||+|+..         ++.||||||+|++|+.|+++|+|||||........+... 
T Consensus       280 G~~~~------~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~-  352 (509)
T 2odp_A          280 GDPKS------QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRP-  352 (509)
T ss_dssp             CCTTC------TTCEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCC-
T ss_pred             CCccc------CCCceeeeEEEEECCCCccccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccC-
Confidence            99764      33578899999999999874         578999999999999999999999999643100000001 


Q ss_pred             ceeeecCCCCccceEEecCeeEEeee--eEEEEee---cCeeecccc---------------------ceEEe-cCCCcc
Q psy15989        156 GTSVCNGDSGGGMVFKIDSAWYLRGI--VSITVAR---DGLRVCDTK---------------------HYVVF-TDVANV  208 (363)
Q Consensus       156 ~~~~c~g~~G~~~~~~~~~~~~~~~l--~~~~~~~---~~~~~C~~~---------------------~~~~~-~~~~~~  208 (363)
                      ....|. ..||+.............+  ....+.+   .+...|...                     +.|.. ....+.
T Consensus       353 ~g~~~~-~~g~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~  431 (509)
T 2odp_A          353 QGSTCR-DHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESP  431 (509)
T ss_dssp             TTCCHH-HHHHHHSCSSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECCTTCCCC
T ss_pred             CCCccc-cccccccccccceeeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCCCCCCcc
Confidence            112344 4566543211000000000  1122222   245566531                     23443 245689


Q ss_pred             CcccccceeEEEEcCccEEEEEEEEE
Q psy15989        209 CNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       209 C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      |.|||||||++..+++|+|+||+||+
T Consensus       432 C~GDSGGPL~~~~~~~~~l~GIvS~G  457 (509)
T 2odp_A          432 CKGESGGAVFLERRFRFFQVGLVSWG  457 (509)
T ss_dssp             CGGGTTCEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCccCceEEEECCeEEEEEEEEEc
Confidence            99999999999999999999999995

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=1.9e-36  Score=291.76  Aligned_cols=223  Identities=23%  Similarity=0.369  Sum_probs=150.5

Q ss_pred             CCCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEec
Q psy15989          6 VSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG   85 (363)
Q Consensus         6 ~~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G   85 (363)
                      ..||....        .+..+.+++|||||+|+........++||||||+++||||||||+....     ....+.|++|
T Consensus       209 ~~CG~~~~--------~~~~~~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~~~~v~~G  275 (497)
T 1rrk_A          209 SLCGMVWE--------HRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD-----KEHSIKVSVG  275 (497)
T ss_dssp             TCTTCCCC--------CTTCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTC-----CGGGEEEEET
T ss_pred             CCCCCCCC--------CCCCCCccccCcEEEEEEEcCCCCCceeEEEEecCCEEEECHHhCCCCC-----CceEEEEEeC
Confidence            47997621        2456788999999999864322237899999999999999999996431     2457899999


Q ss_pred             eecccccCCCCCceeeeeeEEEECCCCCCC---------CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeec
Q psy15989         86 KYHQHQFSDEGGVQNKQVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEG  156 (363)
Q Consensus        86 ~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~---------~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~  156 (363)
                      .+          .+.+.|+++++||+|+..         ++.||||||+|++|+.|+++|+|||||........+. ...
T Consensus       276 ~~----------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~-~~~  344 (497)
T 1rrk_A          276 GE----------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR-LPP  344 (497)
T ss_dssp             TC----------SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTT-CCT
T ss_pred             Cc----------cceeeeEEEEeCCCccccccccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccc-cCC
Confidence            64          256789999999999864         5789999999999999999999999996431000000 011


Q ss_pred             eeeecCCCCccceEEecC-----eeEEeeeeEEEEeecC---eeeccc--------------------cceEEecC----
Q psy15989        157 TSVCNGDSGGGMVFKIDS-----AWYLRGIVSITVARDG---LRVCDT--------------------KHYVVFTD----  204 (363)
Q Consensus       157 ~~~c~g~~G~~~~~~~~~-----~~~~~~l~~~~~~~~~---~~~C~~--------------------~~~~~~~~----  204 (363)
                      ...|+ ..||+.......     ......|+...+++.+   ...|..                    .+.|....    
T Consensus       345 ~~~~~-~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~  423 (497)
T 1rrk_A          345 TTTCQ-QQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYA  423 (497)
T ss_dssp             TCCHH-HHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSC
T ss_pred             CCchh-cccccccCCccccceeeccCCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCC
Confidence            12444 345553211000     0011235566666666   467853                    22455432    


Q ss_pred             CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-----CCcc----eEEEeeeEE
Q psy15989        205 VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-----TKHY----VVFTDVKRV  257 (363)
Q Consensus       205 ~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-----~~~~----~v~~~V~~i  257 (363)
                      ..+.|.|||||||++..+++|+|+||+||+.    ...|.     ...|    .+|++|..+
T Consensus       424 ~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~----~~~C~~~~~~~~~P~~~r~vyt~V~~~  481 (497)
T 1rrk_A          424 DPNTCRGDSGGPLIVHKRSRFIQVGVISWGV----VDVCKNQKRQKQVPAHARDFHINLFQV  481 (497)
T ss_dssp             CCCCCGGGTTCEEEEEETTEEEEEEEEEEES----CCCC--------CCTTCEEEEEEGGGG
T ss_pred             CCcCCCCCCCCeeEEEeCCEEEEEEEEEecC----CCCCCCccccCCCCCccceeeeeHHHH
Confidence            3579999999999999999999999999952    11465     2334    388888653

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=100.00  E-value=2.1e-35  Score=232.53  Aligned_cols=129  Identities=33%  Similarity=0.588  Sum_probs=107.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...   ..++||||||+++||||||||+..         ..+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---~~~~CgGsLIs~~~VLTAAHC~~~---------~~~~v~~G~~~~~~~~--~~~~   66 (131)
T 1yph_C            1 IVNGEEAVPGSWPWQVSLQDKT---GFHFCGGSLINENWVVTAAHCGVT---------TSDVVVAGEFDQGSSS--EKIQ   66 (131)
T ss_dssp             CBTCEECCTTSSTTEEEEECTT---SCEEEEEEEEETTEEEECGGGCCC---------TTSEEEESCSBTTCSS--SCCE
T ss_pred             CCCCEECCCCCcCcEEEEEeCC---CCEEEEEEEeeCCEEEECHHHCCC---------CCeEEEEeEccCCCCC--CceE
Confidence            7899999999999999998632   268999999999999999999863         3468999999876443  4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccce
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMV  169 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~  169 (363)
                      .+.|+++++||+|+..+..||||||||++|+.|+++|+|||||.... .     ......|. .+|||.+
T Consensus        67 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~-~-----~~~g~~~~-v~GWG~t  129 (131)
T 1yph_C           67 KLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASD-D-----FAAGTTCV-TTGWGLT  129 (131)
T ss_dssp             EEEEEEEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTC-C-----CCTTCEEE-EEESCCS
T ss_pred             EEEEEEEEeCCCCCCCCCCCCEEEEEECCcccCCCcCcceECCCccc-C-----CCCCCEEE-EEcCCcc
Confidence            89999999999999999999999999999999999999999997654 1     11223566 7888853

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=100.00  E-value=1.7e-33  Score=283.71  Aligned_cols=224  Identities=23%  Similarity=0.382  Sum_probs=147.4

Q ss_pred             CCCCCccccCCccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEe
Q psy15989          5 DVSCGTVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYL   84 (363)
Q Consensus         5 ~~~CG~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~   84 (363)
                      ...||..        ..+|.++.+++|||||+|.........++||||||+++||||||||+....     ....+.|++
T Consensus       450 ~~~CG~~--------~~~~~~~~~~~~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~~~~V~~  516 (741)
T 3hrz_D          450 LSLCGMV--------WEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD-----KEHSIKVSV  516 (741)
T ss_dssp             TTSTTCC--------CCC---CCTTTCTTEEEEEECCCC-----EEEEECSSSEEEECGGGCC----------CCEEEEE
T ss_pred             ccccccc--------cccCCcccccCcCCeEEEEEEeCCCCCCEEEEEEecCCEEEEchhhccccC-----CcceEEEEe
Confidence            3568865        335889999999999999764333347899999999999999999997531     346789999


Q ss_pred             ceecccccCCCCCceeeeeeEEEECCCCCCCC---------CCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeee
Q psy15989         85 GKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSN---------YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVE  155 (363)
Q Consensus        85 G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~---------~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~  155 (363)
                      |...          +.+.|+++++||+|+..+         +.||||||+|++|+.|+++|+|||||........+. ..
T Consensus       517 G~~~----------~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~-~~  585 (741)
T 3hrz_D          517 GGEK----------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR-LP  585 (741)
T ss_dssp             TTCS----------CCEEEEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTT-CC
T ss_pred             CCCc----------eEEEEEEEEECCCCCcccccccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhc-cC
Confidence            9642          567899999999998654         689999999999999999999999985431000000 01


Q ss_pred             ceeeecCCCCccceEEecCe-----eEEeeeeEEEEeecC---eeeccc--------------------cceEEecC---
Q psy15989        156 GTSVCNGDSGGGMVFKIDSA-----WYLRGIVSITVARDG---LRVCDT--------------------KHYVVFTD---  204 (363)
Q Consensus       156 ~~~~c~g~~G~~~~~~~~~~-----~~~~~l~~~~~~~~~---~~~C~~--------------------~~~~~~~~---  204 (363)
                      ....|. ..||+........     .....|+...+.+.+   ...|..                    .+.|....   
T Consensus       586 ~~~~~~-~~gwg~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~  664 (741)
T 3hrz_D          586 PTTTCQ-QQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPY  664 (741)
T ss_dssp             TTCCHH-HHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSS
T ss_pred             CCCccc-cccccccccccccceeccccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCC
Confidence            122444 5666654221100     011235555666555   455654                    12344433   


Q ss_pred             -CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCC----Ccc-----eEEEeeeEE
Q psy15989        205 -VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT----KHY-----VVFTDVKRV  257 (363)
Q Consensus       205 -~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~----~~~-----~v~~~V~~i  257 (363)
                       ..+.|.|||||||++..+++|+|+||+||+.    ...|..    ..+     .+|++|..+
T Consensus       665 ~~~~~C~GDSGGPL~~~~~~~~~lvGIvS~G~----~~~C~~~~~~~~p~~~~~~vyt~V~~~  723 (741)
T 3hrz_D          665 ADPNTCRGDSGGPLIVHKRSRFIQVGVISWGV----VDVCKNQKRQKQVPAHARDFHINLFQV  723 (741)
T ss_dssp             CCCCCCGGGTTCEEEEEETTEEEEEEEEEEES----SCCCC------CCCTTCEEEEEEGGGS
T ss_pred             CCCCcCcCcccCceEEeeCCeEEEEEEEeecC----CcccCCcccccCCCCCccceEEEhHHh
Confidence             4679999999999999999999999999952    124654    455     788888763

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.97  E-value=2.1e-33  Score=240.63  Aligned_cols=195  Identities=12%  Similarity=0.066  Sum_probs=139.4

Q ss_pred             ccceeecCeecCCCCCcc--eEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccC
Q psy15989         16 AQPLVTYGQKTARGQWPW--HVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFS   93 (363)
Q Consensus        16 ~~~rIvgG~~a~~~~~Pw--~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~   93 (363)
                      ...||+||.     +|||  ++.+.  .   ..++||||||+++||||||||+.+.....  -...+.|++|.+++... 
T Consensus         7 ~~~rI~~g~-----~~P~~~~~~~~--~---~~~~CgGtLIs~~~VLTAAHCv~~~~~~~--~~~~~~v~~G~~~~~~~-   73 (215)
T 1p3c_A            7 GRTKVANTR-----VAPYNSIAYIT--F---GGSSCTGTLIAPNKILTNGHCVYNTASRS--YSAKGSVYPGMNDSTAV-   73 (215)
T ss_dssp             CCEECSCTT-----STTGGGEEEEE--C---SSCEEEEEEEETTEEEECHHHHEETTTTE--ECCCCEEEETCBTTBCT-
T ss_pred             CCEEecCCC-----cCCCeEEEEEE--c---CCceEEEEEEeCCEEEECccEeccCCCCc--cccceEEEEcccCCCCC-
Confidence            457899995     5788  34443  2   16899999999999999999997532100  01233899999887532 


Q ss_pred             CCCCceeeeeeEEEECCCCC-CCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEe
Q psy15989         94 DEGGVQNKQVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKI  172 (363)
Q Consensus        94 ~~~~~~~~~V~~i~~hp~y~-~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~  172 (363)
                          .+.+.|+++++||+|+ ..+..||||||||++|  |++.++|||||....       ..+ ..|. .+|||.....
T Consensus        74 ----~~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~--~~~~v~pi~l~~~~~-------~~g-~~~~-~~Gwg~~~~~  138 (215)
T 1p3c_A           74 ----NGSANMTEFYVPSGYINTGASQYDFAVIKTDTN--IGNTVGYRSIRQVTN-------LTG-TTIK-ISGYPGDKMR  138 (215)
T ss_dssp             ----TCCEEEEEEECCHHHHHHCCGGGCCEEEEESSC--HHHHHCCCCBCCCSC-------CTT-CEEE-EEECCHHHHH
T ss_pred             ----CCeEEEEEEEeCCccccCCCcccCEEEEEECCC--CcccceeeecCCCcc-------cCC-CeEE-EecCCCCCcc
Confidence                3478999999999994 5677899999999996  678999999997654       112 2444 6788754221


Q ss_pred             cCeeEEeeeeEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEE
Q psy15989        173 DSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT  252 (363)
Q Consensus       173 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~  252 (363)
                      .   ....++...+.+++...|...+     ...+.|.|||||||++. ++  +|+||+|++.      .|. ..+.+|+
T Consensus       139 ~---~~~~l~~~~~~~~~~~~c~~~~-----~~~~~C~GDSGgPl~~~-~g--~lvGi~S~g~------~c~-~~p~v~t  200 (215)
T 1p3c_A          139 S---TGKVSQWEMSGSVTREDTNLAY-----YTIDTFSGNSGSAMLDQ-NQ--QIVGVHNAGY------SNG-TINGGPK  200 (215)
T ss_dssp             H---HSSCCCEEEEEECCEECSSEEE-----ECCCCCTTCTTCEEECT-TS--CEEEECCEEE------GGG-TEEEEEB
T ss_pred             c---ccceechhccCccCcccchhee-----eccccCCCCCCCeeEcc-CC--eEEEEEeccc------CCC-ccCceeE
Confidence            1   1123456667778888897543     25689999999999975 22  8999999953      355 6678888


Q ss_pred             eeeE
Q psy15989        253 DVKR  256 (363)
Q Consensus       253 ~V~~  256 (363)
                      +|..
T Consensus       201 ~v~~  204 (215)
T 1p3c_A          201 ATAA  204 (215)
T ss_dssp             CCHH
T ss_pred             echH
Confidence            8764

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.96  E-value=5.7e-30  Score=218.99  Aligned_cols=177  Identities=14%  Similarity=0.128  Sum_probs=120.0

Q ss_pred             CCCCCcceEEEEEeeCCceeEEEEEEEee---CCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeee
Q psy15989         27 ARGQWPWHVALYRTEGINLSYVCGGSLVS---VNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQV  103 (363)
Q Consensus        27 ~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs---~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V  103 (363)
                      .+++|||++.|++... ...|+||||||+   ++||||||||+.......  ....+.|++|.++..     ...+.+.|
T Consensus         2 ~~~~~p~~g~l~~~~~-~~~~~CgGslI~s~s~~~VLTAAHC~~~~~~~~--~~~~~~v~~G~~~~~-----~~~~~~~v   73 (218)
T 3cp7_A            2 NPADSPHIGKVFFSTN-QGDFVCSANIVASANQSTVATAGHCLHDGNGGQ--FARNFVFAPAYDYGE-----SEHGVWAA   73 (218)
T ss_dssp             -CTTCTTEEEEEEEET-TEEEEEEEEEBCCTTSCEEEECGGGTBCCTTCB--BCEEEEEEETCSSSC-----CTTCCEEE
T ss_pred             CCCCCceEEEEEEEcC-CCCeEEEEEEEecCCCCEEEEChHhcCcCCCCe--eecCEEEECcccCCC-----CCccEEEE
Confidence            3689999999987543 347999999999   999999999996421110  124688899987643     22346889


Q ss_pred             eEEEECCCCCC-CCCCCCeEEEEeCCc--ccCCCCcc-ceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        104 KRVHIYPTFNS-SNYLGDIALLQLSSD--VDYSMYVR-PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       104 ~~i~~hp~y~~-~~~~nDIALl~L~~~--~~~~~~v~-picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      +++++||+|+. .+..||||||||++|  +.|++.|+ |++|+....        .+ ..|. .+|||........ .+ 
T Consensus        74 ~~~~~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~~--------~g-~~~~-v~GwG~~~~~~~~-~l-  141 (218)
T 3cp7_A           74 EELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQP--------RG-QYYS-AYGYPAAAPFNGQ-EL-  141 (218)
T ss_dssp             EEEEECHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSCC--------SS-CEEE-EEECCCSTTCCSS-SC-
T ss_pred             EEEEECcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeecCC--------CC-CEEE-EEeCCCCCCCCCc-ee-
Confidence            99999999974 467899999999999  88989999 999975322        12 2344 5777754211110 00 


Q ss_pred             eeeEEEEeecCeeeccccceEE-ecC-----CCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        180 GIVSITVARDGLRVCDTKHYVV-FTD-----VANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~~~-~~~-----~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                                  ..|....... ...     ....|.|||||||++..+++++|+||+||+.
T Consensus       142 ------------~~C~~~~~~~~~~~~~~~~~Ca~~~GDSGGPlv~~~~g~~~lvGIvS~G~  191 (218)
T 3cp7_A          142 ------------HSCHGTATNDPMGSSTQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYGY  191 (218)
T ss_dssp             ------------EEEEEECEECTTSSSCEEEECCCCTTCTTCEEEESSSSSSCEEEECCEEE
T ss_pred             ------------eEeeeeEEcCCCCCceEEecCCCCCCCcCCeeEEccCCCeEEEEEEcccc
Confidence                        1232110000 000     0113579999999998777789999999963

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.92  E-value=2.8e-25  Score=158.68  Aligned_cols=79  Identities=32%  Similarity=0.589  Sum_probs=68.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+...    .++||||||+++||||||||+..          .+.|++|.+++....  ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----~~~CgGslIs~~~VLTAAHC~~~----------~~~v~~G~~~~~~~~--~~~~   64 (80)
T 2pka_A            1 IIGGRECEKNSHPWQVAIYHYS----SFQCGGVLVNPKWVLTAAHCKND----------NYEVWLGRHNLFENE--NTAQ   64 (80)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEEEETTEEEECGGGCCS----------CCEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----ceEEEEEEEcCCEEEECHHHCCC----------CcEEEEeeeEcCCCC--CCcE
Confidence            7899999999999999998642    78999999999999999999853          357999999876543  4568


Q ss_pred             eeeeeEEEECCCCCC
Q psy15989        100 NKQVKRVHIYPTFNS  114 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~  114 (363)
                      .+.|+++++||+|+.
T Consensus        65 ~~~v~~i~~Hp~y~~   79 (80)
T 2pka_A           65 FFGVTADFPHPGFNL   79 (80)
T ss_dssp             EEEEEEEEECTTTTT
T ss_pred             EEEEEEEEECcCCCC
Confidence            899999999999975

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.92  E-value=2.8e-25  Score=193.40  Aligned_cols=177  Identities=19%  Similarity=0.161  Sum_probs=112.9

Q ss_pred             ecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeee
Q psy15989         25 KTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVK  104 (363)
Q Consensus        25 ~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~  104 (363)
                      ++.+++|||++.++.....  .++|||+||+++||||||||+.....    ....+.+..|.+...........+.+.++
T Consensus        35 ~a~~~~~p~~~~v~i~~~~--~~~c~G~lI~~~~VLTAaHcv~~~~~----~~~~v~~~~G~~~~~~~~~~~~~~~~~~~  108 (242)
T 1agj_A           35 EKDRQKYPYNTIGNVFVKG--QTSATGVLIGKNTVLTNRHIAKFANG----DPSKVSFRPSINTDDNGNTETPYGEYEVK  108 (242)
T ss_dssp             TTGGGSTTGGGEEEEEETT--TEEEEEEECSSSEEEECHHHHGGGTT----CGGGEEEEETCEECTTSCEECTTCCEEEE
T ss_pred             cccccccccceEEEEEECC--CccEEEEEEeCCEEEEChhhcccCCC----CceEEEEecCccccccccccccCCceeEE
Confidence            4788999999877544321  58999999999999999999975321    11245555587754311000112467788


Q ss_pred             EEEECCCCCCCCCCCCeEEEEeCCccc---CCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeee
Q psy15989        105 RVHIYPTFNSSNYLGDIALLQLSSDVD---YSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGI  181 (363)
Q Consensus       105 ~i~~hp~y~~~~~~nDIALl~L~~~~~---~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l  181 (363)
                      .++.|| |+   ..+|||||+|++|+.   |++.++|+||+.....      ..+ ..|. ..|||......      .+
T Consensus       109 ~i~~~~-~~---~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~~~------~~g-~~~~-v~Gwg~~~~~~------~l  170 (242)
T 1agj_A          109 EILQEP-FG---AGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDL------KDG-DKLE-LIGYPFDHKVN------QM  170 (242)
T ss_dssp             EEESCT-TC---TTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTC------CTT-CEEE-EEECCTTTSTT------CC
T ss_pred             EEEeCC-CC---CCCcEEEEEEcCCCccccccccccceecCccccC------CCC-CEEE-EEeCCCCCCCc------cc
Confidence            899999 74   468999999999964   6678999999854321      112 2333 56777532211      12


Q ss_pred             eEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        182 VSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       182 ~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      ....+.+.+...+    .   ......|.|||||||+..   ...|+||+|++.
T Consensus       171 ~~~~~~~~~~~~~----~---~~~~~~c~GdSGGPl~~~---~g~lvGI~s~g~  214 (242)
T 1agj_A          171 HRSEIELTTLSRG----L---RYYGFTVPGNSGSGIFNS---NGELVGIHSSKV  214 (242)
T ss_dssp             EEEEEEECCGGGS----E---EEECCCCGGGTTCEEECT---TSEEEEEEEEEE
T ss_pred             eeeeeeEecCCce----E---EEeCCcCCCCCchHhccc---CCEEEEEEeccc
Confidence            2223333322111    1   112478999999999953   348999999953

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.91  E-value=5.8e-24  Score=188.01  Aligned_cols=172  Identities=15%  Similarity=0.201  Sum_probs=112.0

Q ss_pred             cCCCCCcceEEE--EEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeee
Q psy15989         26 TARGQWPWHVAL--YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQV  103 (363)
Q Consensus        26 a~~~~~Pw~v~l--~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V  103 (363)
                      +..++|||++.+  +.... ...++|+|+||+++||||||||+.....    ....+.|++|.++.....  .  ..+.+
T Consensus        12 ~~~~~~P~~~~v~i~~~~~-~~~~~C~G~lI~~~~VLTAAHCv~~~~~----~~~~i~V~~G~~~~~~~~--~--g~~~~   82 (274)
T 2o8l_A           12 TDTTNGHYAPVTYIQVEAP-TGTFIASGVVVGKDTLLTNKHVVDATHG----DPHALKAFPSAINQDNYP--N--GGFTA   82 (274)
T ss_dssp             SSTTSGGGTTEEEEEEEET-TEEEEEEEEEEETTEEEECHHHHHTTTT----CGGGEEEEETCCBTTBCT--T--CCEEE
T ss_pred             cCCCCCCcceEEEEEEEcC-CCCEEEEEEEEECCEEEEChhhCcccCC----CcceEEEEecccCccccc--C--ccEEE
Confidence            567889998764  33222 2368999999999999999999965321    124589999987654322  1  24678


Q ss_pred             eEEEECCCCCCCCCCCCeEEEEeCCcc---cCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEee
Q psy15989        104 KRVHIYPTFNSSNYLGDIALLQLSSDV---DYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRG  180 (363)
Q Consensus       104 ~~i~~hp~y~~~~~~nDIALl~L~~~~---~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~  180 (363)
                      .+++.|+.      .+|||||||++++   .|++.++|+||+.....      ..+ ..|. ..|||........+...+
T Consensus        83 ~~i~~~~~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~------~~g-~~v~-v~Gwg~~~~~~~~~~~~g  148 (274)
T 2o8l_A           83 EQITKYSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAET------QTN-QNIT-VTGYPGDKPVATMWESKG  148 (274)
T ss_dssp             EEEEECSS------SSCCEEEEECCCTTSCCTTTSSCCCEECCCTTC------CTT-CEEE-EEECCTTSSTTCEEEEEE
T ss_pred             EEEEeCCC------CCcEEEEEecCcccccccccccccccccccccc------cCC-CEEE-EEECCCCCCCceEEecCc
Confidence            88999863      5799999999997   47889999999864321      112 2333 567764321111111122


Q ss_pred             eeEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        181 IVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       181 l~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      +....         ...   .+....+.|.|||||||+..   .+.|+||+|++.
T Consensus       149 ~i~~~---------~~~---~i~~~~~~c~GdSGGPLv~~---~g~lvGIvS~G~  188 (274)
T 2o8l_A          149 KITYL---------KGE---AMQYDLSTTGGNSGSPVFNE---KNEVIGIHWGGV  188 (274)
T ss_dssp             EEEEE---------ETT---EEEESCCCCTTCTTCEEECT---TSCEEEEEEEEE
T ss_pred             eEEec---------CCC---eEEeCcccCCCCchhheecc---CCeEEEEEeCcc
Confidence            21110         011   11224678999999999953   358999999963

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.91  E-value=2.8e-24  Score=189.36  Aligned_cols=173  Identities=15%  Similarity=0.209  Sum_probs=111.3

Q ss_pred             cCCCCCcceEEEEEee-CCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeee
Q psy15989         26 TARGQWPWHVALYRTE-GINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVK  104 (363)
Q Consensus        26 a~~~~~Pw~v~l~~~~-~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~  104 (363)
                      +..++|||++.++... .....++|||+||+++||||||||+.....    ....+.|++|.++.....  .  ..+.+.
T Consensus        12 ~~~~~~P~~~~v~l~~~~~~g~~~CgG~lI~~~~VLTAAHCv~~~~~----~~~~i~V~~G~~~~~~~~--~--g~~~~~   83 (268)
T 1wcz_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHG----DPHALKAFPSAINQDNYP--N--GGFTAE   83 (268)
T ss_dssp             SCTTSGGGTTEEEEEEEC-CCEEEEEEEECSSSEEEECHHHHGGGTT----CGGGEEEEETCCBTTBCT--T--CCEEEE
T ss_pred             cCCCCCCccEEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCCCccC----CcceEEEEecccCccccc--C--CcEEEE
Confidence            5678999987643321 112368999999999999999999975321    124689999988764332  1  246788


Q ss_pred             EEEECCCCCCCCCCCCeEEEEeCCcc---cCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeee
Q psy15989        105 RVHIYPTFNSSNYLGDIALLQLSSDV---DYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGI  181 (363)
Q Consensus       105 ~i~~hp~y~~~~~~nDIALl~L~~~~---~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l  181 (363)
                      +++.|+.      .+|||||||++++   .|++.++|+||+.....      ..+. .|. .+|||........+...++
T Consensus        84 ~i~~~~~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~------~~g~-~v~-v~Gwg~~~~~~~~~~~~g~  149 (268)
T 1wcz_A           84 QITKYSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAET------QVNQ-NIT-VTGYPGDKPVATMWESKGK  149 (268)
T ss_dssp             EEEECSS------SSCCEEEEECCCTTSCCHHHHSCCCCBCCCSSC------CTTC-EEE-EEECCTTSSTTCEEEEEEE
T ss_pred             EEecCCC------CCcEEEEEecCcccccccccccceeeccccccc------CCCC-EEE-EEECCCCCCCceEEeecce
Confidence            8888852      5899999999997   47778999999864321      1122 333 4677643211111111122


Q ss_pred             eEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        182 VSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       182 ~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      +...         ...   .+....+.|.|||||||+..   .+.|+||+|++.
T Consensus       150 i~~~---------~~~---~i~~~~~~c~GdSGGPLv~~---~g~lvGIvS~G~  188 (268)
T 1wcz_A          150 ITYL---------KGE---AMQYDLSTTGGNSGSPVFNE---KNEVIGIHWGGV  188 (268)
T ss_dssp             EEEE---------ETT---EEEESBCCCTTCTTCEEECT---TSCEEEEEEEEE
T ss_pred             EEee---------CCC---eEEEecccCCCCccCeEEcc---CCEEEEEEeCCc
Confidence            1110         011   11224688999999999953   358999999953

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.90  E-value=5.4e-24  Score=185.52  Aligned_cols=173  Identities=14%  Similarity=0.119  Sum_probs=111.0

Q ss_pred             cCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccc-cCCCCCceeeeee
Q psy15989         26 TARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQ-FSDEGGVQNKQVK  104 (363)
Q Consensus        26 a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~-~~~~~~~~~~~V~  104 (363)
                      +..++|||++.++....  ..++|+|+||+++||||||||+.....    ....+.++.|.+.... .......+.+.++
T Consensus        29 ~~~~~~P~~~~~~i~~~--~~~~c~G~lI~~~~VLTAaHcv~~~~~----~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~  102 (246)
T 1qtf_A           29 TDNARSPYNSVGTVFVK--GSTLATGVLIGKNTIVTNYHVAREAAK----NPSNIIFTPAQNRDAEKNEFPTPYGKFEAE  102 (246)
T ss_dssp             SCCSSTTGGGEEEEEET--TTEEEEEEEEETTEEEECHHHHGGGTT----CGGGEEEEETCCCCTTTTCCCCTTCCEEEE
T ss_pred             hhcCcCchhcEEEEEEC--CCceEEEEEEECCEEEECHHhCCCCCC----CceEEEEecCccccccccccccCCceEEEE
Confidence            56799999987643321  268999999999999999999965321    1246888888865432 1000122467889


Q ss_pred             EEEECCCCCCCCCCCCeEEEEeCCcc---cCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeee
Q psy15989        105 RVHIYPTFNSSNYLGDIALLQLSSDV---DYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGI  181 (363)
Q Consensus       105 ~i~~hp~y~~~~~~nDIALl~L~~~~---~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l  181 (363)
                      .++.|| |+   ..+|||||+|++++   .|++.++|+||+.....      ..+ ..|. ..|||.......      +
T Consensus       103 ~i~~hp-~~---~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~~~------~~g-~~v~-v~G~p~g~~~~~------~  164 (246)
T 1qtf_A          103 EIKESP-YG---QGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDI------AKG-DKYS-LLGYPYNYSAYS------L  164 (246)
T ss_dssp             EEESCT-TC---TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCCC------CTT-CEEE-EEECCTTTSTTC------C
T ss_pred             EEEeCC-CC---CCCCEEEEEEeCCccccccccceeeeecCCcccc------CCC-CEEE-EEECCCCCCCce------e
Confidence            999999 64   46899999999998   56778999999864331      112 2333 466653211110      1


Q ss_pred             eEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        182 VSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       182 ~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      ....+.+.+     ..     ......|.|||||||+..   ...|+||+|++.
T Consensus       165 ~~~~~~~~~-----~~-----~~~~~~~~GdSGGPlv~~---~g~lvGI~s~g~  205 (246)
T 1qtf_A          165 YQSQIEMFN-----DS-----QYFGYTEVGNSGSGIFNL---KGELIGIHSGKG  205 (246)
T ss_dssp             EEEEEEESS-----SS-----BEESCCCGGGTTCEEECT---TCCEEEEEEEEE
T ss_pred             EeeeeeecC-----cE-----EEeCCCCCCCchhheECC---CCEEEEEEeccc
Confidence            111222221     00     012467999999999952   337999999963

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.89  E-value=1.1e-23  Score=184.18  Aligned_cols=170  Identities=18%  Similarity=0.138  Sum_probs=97.4

Q ss_pred             eEEEEEEEeeC------CEEEeeccCcccCCCCCcccCCcEEEEeceecccccCC---------CCCceeeeeeEEEECC
Q psy15989         46 SYVCGGSLVSV------NYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSD---------EGGVQNKQVKRVHIYP  110 (363)
Q Consensus        46 ~~~CgGsLIs~------~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~---------~~~~~~~~V~~i~~hp  110 (363)
                      .|+||||||++      +||||||||+....    ..+..++|++|.........         +...+...+.++++|+
T Consensus        33 ~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~----~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~h~  108 (268)
T 1arb_A           33 TLACTGSLVNNTANDRKMYFLTAHHCGMGTA----STAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKAT  108 (268)
T ss_dssp             EEEEEEEEBCCTTCCCCCEEEEEGGGSCCSH----HHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEEEEE
T ss_pred             ccEEeEEEEcCCCCCCCCEEEEcHHhCCCcc----CcceEEEEEeCCCCCccccccccccccccCCcceEEeccceEecC
Confidence            79999999998      69999999986310    12345778877543211100         0112223377889998


Q ss_pred             CCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEE-----eeeeEEE
Q psy15989        111 TFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL-----RGIVSIT  185 (363)
Q Consensus       111 ~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~-----~~l~~~~  185 (363)
                      .     ..||||||||++|+..           ...             +. .+||+.+.........     ..++...
T Consensus       109 ~-----~~nDIALLrL~~~v~~-----------~~~-------------~~-vsGWG~t~~~~~~~~~~~~~~~~l~~i~  158 (268)
T 1arb_A          109 Y-----ATSDFTLLELNNAANP-----------AFN-------------LF-WAGWDRRDQNYPGAIAIHHPNVAEKRIS  158 (268)
T ss_dssp             E-----TTTTEEEEEESSCCCG-----------GGC-------------CE-EBCEECCSCCCSCEEEEECGGGCSCEEE
T ss_pred             C-----CCCceEEEEecCCCCC-----------CCc-------------eE-EeCcCccCCCCCcceeeccCCcccEEEE
Confidence            3     4689999999998531           000             11 3444433211110000     0122222


Q ss_pred             EeecCe--eecc----ccceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCC---cceEEEee
Q psy15989        186 VARDGL--RVCD----TKHYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK---HYVVFTDV  254 (363)
Q Consensus       186 ~~~~~~--~~C~----~~~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~---~~~v~~~V  254 (363)
                      +...+.  ..|.    ..+.++...  ..+.|.|||||||++.   .++|+||+||     +...|...   .|.+|++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~iCag~~~~~gdtC~gdsGgPl~~~---~~~~~Gi~s~-----g~~~C~~~~~~~p~vyt~v  230 (268)
T 1arb_A          159 NSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSP---EKRVLGQLHG-----GPSSCSATGTNRSDQYGRV  230 (268)
T ss_dssp             EECSCCEEECTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECT---TSCEEEEEEE-----CSCCTTCCGGGSEEEEEEH
T ss_pred             eeccccccccccccccCCeEEEeeecCCCCCccCcccCCcEee---CCEEEEEEee-----cCcccCCCCCCCCceEEEe
Confidence            222221  1121    233444322  3379999999999863   3579999999     43357653   78999998


Q ss_pred             eEE
Q psy15989        255 KRV  257 (363)
Q Consensus       255 ~~i  257 (363)
                      ..+
T Consensus       231 ~~~  233 (268)
T 1arb_A          231 FTS  233 (268)
T ss_dssp             HHH
T ss_pred             eee
Confidence            754

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.89  E-value=1.7e-23  Score=176.76  Aligned_cols=160  Identities=16%  Similarity=0.125  Sum_probs=99.6

Q ss_pred             cCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeE
Q psy15989         26 TARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKR  105 (363)
Q Consensus        26 a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~  105 (363)
                      +.+++|||||+++       .++|+|+||+++||||||||+....      .....|+++.....     ...+.+.+++
T Consensus         8 ~~~~~~P~~v~~~-------~~~c~G~lI~~~~VLTaaHcv~~~~------~~~~~v~v~~~~~~-----~~~~~~~~~~   69 (200)
T 2w7s_A            8 TDATKEPYNSVVA-------FVGGTGVVVGKNTIVTNKHIAKSND------IFKNRVSAHHSSKG-----KGGGNYDVKD   69 (200)
T ss_dssp             SCTTSTTGGGEEE-------ETTEEEEEEETTEEEECHHHHHHHH------HTTCCEEETCCSSS-----CCCCEECEEE
T ss_pred             eccccCCcccccc-------cceEEEEEEECCEEEEChhhcCCcc------cCCcEEEEEecCcc-----CCCcEEEEEE
Confidence            7889999999885       3469999999999999999986421      11133444443221     2335677777


Q ss_pred             EEECCCCCCCCCCCCeEEEEeCCc----ccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC-eeEEee
Q psy15989        106 VHIYPTFNSSNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS-AWYLRG  180 (363)
Q Consensus       106 i~~hp~y~~~~~~nDIALl~L~~~----~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~-~~~~~~  180 (363)
                      ++.+.   .   .+|||||||+++    +.|++.++|+||+....        .+ ..|. ..|||....... .....+
T Consensus        70 i~~~~---~---~~DiAll~l~~~~~~~~~~~~~v~pi~l~~~~~--------~g-~~v~-v~G~p~g~~~~~~~~~~~g  133 (200)
T 2w7s_A           70 IVEYP---G---KEDLAIVHVHETSTEGLNFNKNVSYTKFADGAK--------VK-DRIS-VIGYPKGAQTKYKMFESTG  133 (200)
T ss_dssp             EEECS---S---SSSCEEEEECSBCTTSCBGGGSCCCCCBCCCCC--------TT-CEEE-EEECTTHHHHTSCEEEEEE
T ss_pred             EecCC---C---cceEEEEEECCCCCCcccccccccceeccccCC--------CC-CEEE-EEECCCCCCCccceEEeEE
Confidence            77542   2   579999999996    88999999999973221        12 2233 455542111110 111112


Q ss_pred             eeEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        181 IVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       181 l~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      +.+.         +...+.   ....+.|.|||||||+..   ...|+||+|++
T Consensus       134 ~v~~---------~~~~~~---~~~~~~~~GdSGGPl~~~---~g~lvGI~s~g  172 (200)
T 2w7s_A          134 TINH---------ISGTFM---EFDAYAQPGNSGSPVLNS---KHELIGILYAG  172 (200)
T ss_dssp             EEEE---------EETTEE---EECSCCCTTCTTCEEECT---TSCEEEEEEEE
T ss_pred             EEEc---------cCCCEE---EEcceeCCCCccCeEECc---CCEEEEEEecc
Confidence            2211         111111   123578999999999953   24799999995

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.88  E-value=4e-23  Score=175.10  Aligned_cols=160  Identities=17%  Similarity=0.190  Sum_probs=100.3

Q ss_pred             ecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeee
Q psy15989         25 KTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVK  104 (363)
Q Consensus        25 ~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~  104 (363)
                      .+.+++|||||+++       .++|+|+||+++||||||||+....     ....+.+..+. ..      ...+.+.+.
T Consensus         7 ~~~~~~~P~~~~~~-------~~~c~G~lI~~~~VLTaaHcv~~~~-----~~~~v~v~~~~-~~------~~~~~~~~~   67 (204)
T 2vid_A            7 VKDTNIFPYTGVVA-------FKSATGFVVGKNTILTNKHVSKNYK-----VGDRITAHPNS-DK------GNGGIYSIK   67 (204)
T ss_dssp             CSCTTSTTGGGEEE-------CSSCEEEEEETTEEEECHHHHTTCC-----TTCEEEESCCS-SS------CCSCEEEEE
T ss_pred             eccCCcCchhheEE-------eeeEEEEEEECCEEEEChhHCCCcc-----CCceEEEEecc-cc------CCCcEEEee
Confidence            37889999999764       2369999999999999999996531     11233332221 11      223567788


Q ss_pred             EEEECCCCCCCCCCCCeEEEEeCC--------cccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCe-
Q psy15989        105 RVHIYPTFNSSNYLGDIALLQLSS--------DVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSA-  175 (363)
Q Consensus       105 ~i~~hp~y~~~~~~nDIALl~L~~--------~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~-  175 (363)
                      +++.|+.      .+|||||||++        ++.|++.++|+||+....        .+ ..|. ..|||........ 
T Consensus        68 ~i~~~~~------~~DiAll~l~~~~~~~~~~~~~~~~~v~pi~l~~~~~--------~g-~~~~-~~G~g~~~~~~~~~  131 (204)
T 2vid_A           68 KIINYPG------KEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAK--------AG-ERIK-VIGYPHPYKNKYVL  131 (204)
T ss_dssp             EEEECSS------SSCCEEEEECSEEEEEETTEEEHHHHCCCCCBCSCCC--------TT-CEEE-EEECCCCCC--CCC
T ss_pred             EEecCCC------CCeEEEEEEcCcccccccccccccccccccccCCcCC--------CC-CEEE-EEeCCCCCCCCcce
Confidence            8888652      57999999995        677888899999975221        12 2333 4677753221110 


Q ss_pred             eEEeeeeEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        176 WYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       176 ~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      ....+....   .      ....   +....+.|.|||||||+..   .+.|+||+|++
T Consensus       132 ~~~~g~v~~---~------~~~~---~~~~~~~~~GdSGGPl~~~---~g~lvGI~s~g  175 (204)
T 2vid_A          132 YESTGPVMS---V------EGSS---IVYSAHTESGNSGSPVLNS---NNELVGIHFAS  175 (204)
T ss_dssp             EEEEEEEEE---E------ETTE---EEECCCCCGGGTTCEEECT---TSCEEEEEEEE
T ss_pred             EeeccEEee---c------cCCe---EEEecccCCCCccCcEECC---CCeEEEEEecC
Confidence            111111111   0      0111   1124678999999999942   45899999995

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.86  E-value=1.4e-22  Score=172.36  Aligned_cols=160  Identities=14%  Similarity=0.136  Sum_probs=101.0

Q ss_pred             cCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeE
Q psy15989         26 TARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKR  105 (363)
Q Consensus        26 a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~  105 (363)
                      +.+++|||+|++.       .++|+|+||+++||||||||+....     ....+.|.+|...       ...+.+.+++
T Consensus         9 ~~~~~~P~~v~~~-------~~~c~G~lI~~~~VLTaaHcv~~~~-----~~~~i~v~~~~~~-------~~g~~~~~~~   69 (210)
T 2as9_A            9 KDTNNFPYNGVVS-------FKDATGFVIGKNTIITNKHVSKDYK-----VGDRITAHPNGDK-------GNGGIYKIKS   69 (210)
T ss_dssp             SCTTSTTGGGEEE-------CSSCEEEEEETTEEEECHHHHHHCC-----TTCEEEESCCGGG-------CCSCEEEEEE
T ss_pred             ecCCcCCeEEEEE-------eeeEEEEEEeCCEEEECHhHCCccC-----CCCEEEEEeCccc-------CCCCEEEEEE
Confidence            5679999999774       3469999999999999999996421     1235777666521       2235667777


Q ss_pred             EEECCCCCCCCCCCCeEEEEeCC--------cccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC-ee
Q psy15989        106 VHIYPTFNSSNYLGDIALLQLSS--------DVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS-AW  176 (363)
Q Consensus       106 i~~hp~y~~~~~~nDIALl~L~~--------~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~-~~  176 (363)
                      ++.+   +.   .+|||||+|+.        |+.|++.++|++|+....        .+. .|. ..|||....... .+
T Consensus        70 v~~~---~~---~~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~~~~--------~g~-~v~-v~G~p~~~~~~~~l~  133 (210)
T 2as9_A           70 ISDY---PG---DEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAK--------VDD-KIK-VIGYPLPAQNSFKQF  133 (210)
T ss_dssp             EEEC---SS---SSSCEEEEECSEEEEEETTEEEGGGSCCCCCBCSCCC--------TTC-EEE-EEECSSTTTTTSCCE
T ss_pred             EEeC---CC---CCcEEEEEecCccccccccccccccccceeecCCCCC--------CCC-EEE-EEeCCCCCCCCcceE
Confidence            7664   22   57999999998        688999999999973221        122 233 456654211110 01


Q ss_pred             EEeeeeEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        177 YLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       177 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      ...++++..         .....+   .....|.|||||||++. +  ..|+||+|++.
T Consensus       134 ~~~g~v~~~---------~~~~i~---~~~~~~~GdSGGPlv~~-~--g~lvGI~s~g~  177 (210)
T 2as9_A          134 ESTGTIKRI---------KDNILN---FDAYIEPGNSGSPVLNS-N--NEVIGVVYGGI  177 (210)
T ss_dssp             EEEEEEEEE---------ETTEEE---EECCCCTTCTTCEEECT-T--SCEEEEECCSC
T ss_pred             EeeeEEccc---------cCCeEE---EcCccCCCCccCcEECC-C--CeEEEEEeccc
Confidence            111222211         011111   12568999999999963 2  27899999853

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=99.84  E-value=7.7e-21  Score=163.69  Aligned_cols=106  Identities=25%  Similarity=0.371  Sum_probs=90.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..++.
T Consensus        65 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  139 (227)
T 1euf_A           65 TQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAE-----VKPGMMCSVAGWGRLGVNMPSTDK  139 (227)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCC-----CCTTCEEEEEESCBSSTTCCBCSB
T ss_pred             ccEEEEEEEEEeCCCCCCCCCcCceEEEEECCcCcCCCceeccCCCCcccc-----CCCCCEEEEEEEccCCCCCCCchh
Confidence            456778999999999999899999999999999999999999999975432     2568899999999886 4456789


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..    +...++++||||+.+
T Consensus       140 L~~~~~~i~~~~~C~~~----~~~~~~~~~~Ca~~~  171 (227)
T 1euf_A          140 LQEVDLEVQSEEKCIAR----FKNYIPFTQICAGDP  171 (227)
T ss_dssp             CEEEEEEBCCTHHHHTT----CTTCCTTTEEEESCT
T ss_pred             heEeEeccccHHHhhHh----hcCcCCCcEEEccCC
Confidence            99999999999999765    334578899999864

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=99.83  E-value=9.8e-21  Score=162.70  Aligned_cols=106  Identities=27%  Similarity=0.382  Sum_probs=89.5

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+..+..++.|
T Consensus        65 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~l  139 (224)
T 1cgh_A           65 TQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEG-----LRPGTLCTVAGWGRVSMRRGTDTL  139 (224)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESCCSSSSCCCSBC
T ss_pred             ccEEEEEEEEEcCCCCCCCCCcCCEEEEEECCCCcCCCceEeeECCCCCCC-----CCCCCEEEEEECCcCCCCCCCCcc
Confidence            356778999999999999899999999999999999999999999975432     256889999999998755668899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+    .....+.||||+..
T Consensus       140 ~~~~~~i~~~~~C~~~~----~~~~~~~~~Ca~~~  170 (224)
T 1cgh_A          140 REVQLRVQRDRQCLRIF----GSYDPRRQICVGDR  170 (224)
T ss_dssp             EEEEEEBCCHHHHHHHC----TTCCTTTEEEECCT
T ss_pred             eEEEEEeeCHHHHHHHh----CcCCCcceEeeccC
Confidence            99999999999998653    33355669999863

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=99.83  E-value=2.5e-20  Score=165.56  Aligned_cols=108  Identities=26%  Similarity=0.449  Sum_probs=90.2

Q ss_pred             eEEEeeeEEEEcCCCCCCCC--CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCcccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~--~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~  326 (363)
                      .+...|.++++||+|+..+.  .||||||||++|+.|+++|+|||||.....     ...+..|+++|||.++.+..++.
T Consensus       109 ~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~-----~~~g~~~~v~GWG~t~~~~~~~~  183 (278)
T 2olg_A          109 PIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEE-----VQVGQRLTVVGWGRTETGQYSTI  183 (278)
T ss_dssp             CEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESCCSSSCCCCSB
T ss_pred             ceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCCC-----cCCCCEEEEEcCCcCCCCCccch
Confidence            46678999999999987665  799999999999999999999999976432     35688999999999876667889


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+.. ....++++||||+..
T Consensus       184 l~~~~~~i~~~~~C~~~~~~-~~~~~~~~~~Ca~~~  218 (278)
T 2olg_A          184 KQKLAVPVVHAEQCAKTFGA-AGVRVRSSQLCAGGE  218 (278)
T ss_dssp             CEEEEEEBCCGGGGGGGGSS-TTCCCCTTEEEECCT
T ss_pred             hhcccccccCHHHHHHHhcc-ccccCCCceEeeecC
Confidence            99999999999999875432 122478999999854

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=99.83  E-value=2.7e-20  Score=161.06  Aligned_cols=109  Identities=25%  Similarity=0.373  Sum_probs=88.5

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..++.
T Consensus        63 ~~~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  137 (234)
T 1orf_A           63 TKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDD-----VKPGTMCQVAGWGRTHNSASWSDT  137 (234)
T ss_dssp             TCEEECEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCC-----CCTTCEEEEEESSCSSSSSCCCSB
T ss_pred             ceEEEEEEEEEcCCCCCCCCCCCCEEEEEECCcCccCCCeeeeecCCCcCC-----CCCCCEEEEEECCcCCCCCCcccc
Confidence            356788999999999999899999999999999999999999999975532     2568899999999885 3456789


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ||++.++++++++|+......+...+.++||||+.
T Consensus       138 L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~  172 (234)
T 1orf_A          138 LREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGS  172 (234)
T ss_dssp             CEEEEEEEECHHHHTSTTTTTTTTCCCTTEEEEEC
T ss_pred             ceEeEEEeeCHHHcCCccccccCCccCCCEEEecC
Confidence            99999999999999742111122234559999986

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=99.82  E-value=2.2e-20  Score=160.82  Aligned_cols=107  Identities=26%  Similarity=0.400  Sum_probs=88.8

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+..
T Consensus        65 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-----~~~g~~~~v~GwG~~~~~~~~~~~  139 (227)
T 1iau_A           65 TQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQ-----VKPGQTCSVAGWGQTAPLGKHSHT  139 (227)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCEEEEEESSCSSSSSCCCSB
T ss_pred             ccEEEEEEEEECCCCCCCCCCCCCeEEEEECCcccCCCceecccCCCCCCC-----CCCCCEEEEEEcccCCCCCCcCce
Confidence            457788999999999999999999999999999999999999999976532     2568899999999885 4456889


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+..   ....+.||||+.+
T Consensus       140 L~~~~~~i~~~~~C~~~~~~---~~~~~~~~Ca~~~  172 (227)
T 1iau_A          140 LQEVKMTVQEDRKCESDLRH---YYDSTIELCVGDP  172 (227)
T ss_dssp             CEEEEEEBCCHHHHHHHTTT---TCCTTTEEEESCT
T ss_pred             eeEeeeeeechHHhhhHhcc---ccCCCcEEEeECC
Confidence            99999999999999865322   1234559999864

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=99.82  E-value=2.8e-20  Score=159.72  Aligned_cols=104  Identities=22%  Similarity=0.412  Sum_probs=89.9

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+...|.++++||+|+..+..||||||||++|+.|+++|+|||||....       ..+..|+++|||.+..+..+..|
T Consensus        62 ~~~~~~v~~i~~Hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~-------~~~~~~~v~GwG~~~~~~~~~~l  134 (223)
T 1lo6_A           62 SQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCS-------ANTTSCHILGWGKTADGDFPDTI  134 (223)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTT-------CCCCEEEEEESSCCTTSSCCSBC
T ss_pred             CcEEEEEEEEEECCCCCCCCCcCeEEEEEECCcccCCCceeecccCCCCC-------CCCCEEEEEEECCCCCCCcCcee
Confidence            34667899999999999989999999999999999999999999997543       45789999999998766678899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+    ...++++||||+..
T Consensus       135 ~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~~  165 (223)
T 1lo6_A          135 QCAYIHLVSREECEHAY----PGQITQNMLCAGDE  165 (223)
T ss_dssp             EEEEEEEECHHHHHHHS----TTTCCTTEEEEECT
T ss_pred             eEEEEEEeCHHHhhhhh----CCCCCCCeEEeecC
Confidence            99999999999998653    34578999999853

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=99.82  E-value=3.3e-20  Score=159.23  Aligned_cols=102  Identities=23%  Similarity=0.384  Sum_probs=88.9

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccce
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELK  328 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~  328 (363)
                      .+..+|.++++||+|+..++.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+..+..++.||
T Consensus        64 ~~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-------~~~~~~~v~GwG~~~~~~~~~~L~  136 (223)
T 2bdg_A           64 SQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCP-------TAGNSCLVSGWGLLANGRMPTVLQ  136 (223)
T ss_dssp             CEEEEEEEEEECTTTTSSTTCSCCEEEEESSCCCCCSSCCCCCBCSSCC-------CTTCEEEEEESCCCTTSCCCSBCE
T ss_pred             cEEEEEEEEEeCCCCCCCCCcCcEEEEEECCcccCCCceecccCCCCCC-------CCCCEEEEEeCcccCCCCCCCcce
Confidence            4667899999999999988999999999999999999999999986542       457899999999987666788999


Q ss_pred             EEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        329 MAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ++.++++++++|++.    |...+.++||||+.
T Consensus       137 ~~~~~~~~~~~C~~~----~~~~~~~~~~Ca~~  165 (223)
T 2bdg_A          137 CVNVSVVSEEVCSKL----YDPLYHPSMFCAGG  165 (223)
T ss_dssp             EEEEEBCCHHHHHHH----STTTCCTTEEEECC
T ss_pred             EEEEEEeCHHHhhhh----hCCCCCCCeEeccC
Confidence            999999999999865    33457889999985

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=99.81  E-value=7.3e-20  Score=158.14  Aligned_cols=107  Identities=23%  Similarity=0.330  Sum_probs=89.6

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+...|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..++.|
T Consensus        64 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~L  138 (232)
T 2oq5_A           64 KMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYE-----FQPGDVMFVTGFGALKNDGYSQNHL  138 (232)
T ss_dssp             SEEEEEEEEEECTTCCTTCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCC-----CCTTCEEEEEESCCSSTTCCCCSBC
T ss_pred             ceEEeEEEEEeCCCCCCCCCCCCEEEEEecCCCccCCceeEeECCCcccc-----CCCCCEEEEEECCccCCCCCCCcee
Confidence            35568999999999999889999999999999999999999999975432     2468899999999885 44567899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+.  +...++++||||+..
T Consensus       139 ~~~~~~~~~~~~C~~~~~--~~~~~~~~~~Ca~~~  171 (232)
T 2oq5_A          139 RQAQVTLIDATTCNEPQA--YNDAITPRMLCAGSL  171 (232)
T ss_dssp             EEEEEEEECHHHHTSTTT--TTTCCCTTEEEEECT
T ss_pred             eEeEEEEeCHHHcCCccc--cCCccCCCEEeecCC
Confidence            999999999999976432  344578999999853

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=99.81  E-value=6.3e-20  Score=163.73  Aligned_cols=109  Identities=22%  Similarity=0.410  Sum_probs=89.0

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Cccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~  325 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||......    ...+..|+++|||.+..+  ..+.
T Consensus        78 ~~~~~~V~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~----~~~~~~~~v~GWG~~~~~~~~~~~  153 (290)
T 1fiw_A           78 PLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGP----PRVPQTCWVAGWGFLQENARRTSP  153 (290)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCS----CCSSCEEEEEESCCSSTTCSSCCS
T ss_pred             CceEEEEEEEEECCCCCCCCCCCCEEEEEECCccccCCccccccCCCccccC----cCCCCeEEEEEeccCCCCCCCCCc
Confidence            3566789999999999998999999999999999999999999999654321    134788999999988533  3467


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .||++.++++++++|+..+  .+...++++|||||+.
T Consensus       154 ~L~~~~v~i~~~~~C~~~~--~~~~~i~~~~iCag~~  188 (290)
T 1fiw_A          154 MLQEARVDLIDLGLCNSTR--WYNGRIRSTNVCAGYP  188 (290)
T ss_dssp             BCEEEEEEEECHHHHTSTT--TTTTCCCTTEEEEECT
T ss_pred             eeeEEEEEEecHHHhcccc--ccCCcCCCCEEEEecC
Confidence            8999999999999997542  1344688999999853

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=99.81  E-value=4.6e-20  Score=158.25  Aligned_cols=103  Identities=32%  Similarity=0.491  Sum_probs=88.5

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+. .+..+..
T Consensus        61 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~  133 (222)
T 1hj8_A           61 SEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCA-------PAGTMCTVSGWGNTMSSTADSNK  133 (222)
T ss_dssp             CCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSCC-------CTTCEEEEEESSCCCCSSCCTTB
T ss_pred             CcEEEEEEEEEECCCCCCCCCCCcEEEEEECCcccCCCceeccCCCCCCC-------CCCCEEEEEECCCCCCCCCCCce
Confidence            34667899999999999988999999999999999999999999996542       457899999999885 3456789


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ||++.++++++++|+..+    ...+.++||||+.
T Consensus       134 L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  164 (222)
T 1hj8_A          134 LQCLNIPILSYSDCNNSY----PGMITNAMFCAGY  164 (222)
T ss_dssp             CEEEEEEBCCHHHHHHHS----TTCCCTTEEEESC
T ss_pred             eEEEEEEEcCHHHhhhhc----cCCCCCCeEEecc
Confidence            999999999999998653    3457899999985

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=99.81  E-value=9.6e-20  Score=158.30  Aligned_cols=107  Identities=23%  Similarity=0.303  Sum_probs=89.3

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCC--CceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVS  324 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~--nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~  324 (363)
                      ..+..+|.++++||+|+..++.  ||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+
T Consensus        68 ~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~  142 (241)
T 1bru_P           68 GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTI-----LPNNYVCYVTGWGRLQTNGASP  142 (241)
T ss_dssp             TCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESCCSSTTSCCC
T ss_pred             ccEEEEEEEEEECCCCCCCCCCCCCcEEEEEeCCCcccCCccCCcccCCCcCC-----CCCCCEEEEEEccccCCCCCCC
Confidence            3466789999999999988777  99999999999999999999999976432     2467899999999885 44567


Q ss_pred             ccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +.||++.++++++++|++.+.  ++..++++||||+.
T Consensus       143 ~~L~~~~~~i~~~~~C~~~~~--~~~~~~~~~~Ca~~  177 (241)
T 1bru_P          143 DILQQGQLLVVDYATCSKPGW--WGSTVKTNMICAGG  177 (241)
T ss_dssp             SBCEEEEEEEECHHHHTSTTT--TGGGCCTTEEEECC
T ss_pred             ccceeCEEEEecHHHhCcccc--cCCcCCCceEeecC
Confidence            899999999999999986421  34458899999984

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=99.81  E-value=7.8e-20  Score=158.48  Aligned_cols=104  Identities=24%  Similarity=0.417  Sum_probs=88.3

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+...|.++++||+|+..++.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+. .+..++.|
T Consensus        74 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-------~~~~~~~v~GwG~~~~~~~~~~~L  146 (237)
T 2f91_A           74 EQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH-------TATGDVIVTGWGTTSEGGNTPDVL  146 (237)
T ss_dssp             CEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-------CCCSEEEEEESCCSSTTCCCCSBC
T ss_pred             cEEEEEEEEEECCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCCCC-------CCCCcEEEEECCcCCCCCCcccee
Confidence            4667899999999999988999999999999999999999999997543       347789999999885 44568899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+.   ...+.++||||+..
T Consensus       147 ~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~~  178 (237)
T 2f91_A          147 QKVTVPLVSDEDCRADYG---ADEILDSMICAGVP  178 (237)
T ss_dssp             EEEEEEEECHHHHHHHHC---TTTSCTTEEEECCT
T ss_pred             eEEEEeEcCHHHhhhhhC---CCCcCCCeEEEecC
Confidence            999999999999976532   13478899999853

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=99.81  E-value=7.7e-20  Score=157.48  Aligned_cols=107  Identities=21%  Similarity=0.336  Sum_probs=89.9

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+..
T Consensus        66 ~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  140 (227)
T 3fzz_A           66 TQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAH-----VKPGDECYVAGWGKVTPDGEFPKT  140 (227)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCEEEEEESSCSSTTSCCCSB
T ss_pred             CceEEEEEEEEECcCCCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccC-----CCCCCEEEEEECCcccCCCCCCCe
Confidence            446678999999999999999999999999999999999999999976542     3568899999999875 4556889


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+.   .....++||||+..
T Consensus       141 l~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~~  173 (227)
T 3fzz_A          141 LHEVKLTVQKDQVCESQFQ---SSYNRANEICVGDS  173 (227)
T ss_dssp             CEEEEEEBCCHHHHHHHHT---TTCCTTTEEEECCC
T ss_pred             eeEEEeeeecHHHhhhhhc---cccCCCceEEEeCC
Confidence            9999999999999986432   22357899999853

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.81  E-value=8.4e-20  Score=156.74  Aligned_cols=103  Identities=24%  Similarity=0.444  Sum_probs=88.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-C-CCccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-N-DRVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~-~~~~~  325 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+. . ...++
T Consensus        61 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~  133 (223)
T 3mfj_A           61 NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-------SAGTQCLISGWGNTKSSGTSYPD  133 (223)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-------CTTCEEEEEESSCCCSSSCCCCS
T ss_pred             CcEEEEeeEEEECCCCCCCCCCCCEEEEEeCCCcccCCcEeeeECCCCCC-------CCCCEEEEEeeeccCCCCCcccc
Confidence            35667899999999999989999999999999999999999999997543       457899999999884 2 34578


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .||++.++++++++|+..+    ...++++||||+.
T Consensus       134 ~L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  165 (223)
T 3mfj_A          134 VLKCLKAPILSDSSCKSAY----PGQITSNMFCAGY  165 (223)
T ss_dssp             SCEEEEEEBCCHHHHHHHS----TTTCCTTEEEESC
T ss_pred             hheEEEEEEeCHHHhhhhh----cCcCCCCEEEccC
Confidence            9999999999999998653    3457899999985

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=99.80  E-value=1e-19  Score=156.70  Aligned_cols=103  Identities=26%  Similarity=0.438  Sum_probs=88.3

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC-CC-ccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN-DR-VSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~-~~-~~~  325 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+.. +. .++
T Consensus        65 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-------~~~~~~~v~GwG~~~~~~~~~~~  137 (228)
T 1fxy_A           65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPP-------ATGTKCLISGWGNTASSGADYPD  137 (228)
T ss_dssp             CEEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEESSCCCSSSCCCCS
T ss_pred             CcEEEEEEEEEECCCCCCCCCcCcEEEEEECCcccCCCceeccCCCCCCC-------CCCCEEEEEecCccCCCCCCCCc
Confidence            35667899999999999989999999999999999999999999997542       4588999999998853 33 688


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .||++.++++++++|+..+    ...++++||||+.
T Consensus       138 ~l~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  169 (228)
T 1fxy_A          138 ELQCLDAPVLSQAKCEASY----PGKITSNMFCVGF  169 (228)
T ss_dssp             SCEEEEEEBCCHHHHHHHS----TTTCCTTEEEESC
T ss_pred             cceEEEEEEeCHHHhHhhc----CCCCCCCEEEecc
Confidence            9999999999999998653    3457889999985

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=99.80  E-value=1.3e-19  Score=157.21  Aligned_cols=107  Identities=23%  Similarity=0.374  Sum_probs=89.2

Q ss_pred             eEEEeeeEEEEcCCCCCCC-CCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSN-YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~-~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      .+...|.++++||+|+... +.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..++.
T Consensus        63 ~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  137 (240)
T 2zgc_A           63 GLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQV-----VAAGTRCSMAGWGLTHQGGRLSRV  137 (240)
T ss_dssp             CEEEEEEEEEECTTCBCTTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCC-----CCTTCEEEEEECCBSSTTCCBCSB
T ss_pred             CeEEEEEEEEECCCCCCCCCCcccEEEEEeCCcccCCCceeeeEcCCCCCC-----CCCCCEEEEEECCcccCCCCcCce
Confidence            3667899999999999876 8999999999999999999999999975432     2568899999999885 4566889


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+...  .|...++++||||+..
T Consensus       138 L~~~~~~~~~~~~C~~~~--~~~~~~~~~~~Ca~~~  171 (240)
T 2zgc_A          138 LRELDLQVLDTRMCNNSR--FWNGSLSPSMVCLAAD  171 (240)
T ss_dssp             CEEEEEEECCHHHHTSTT--TTTTCCCTTEEEEECS
T ss_pred             eeeeeeeecCHHHhCCcc--ccCCCCCCceEeeccC
Confidence            999999999999997621  2444578899999753

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=99.80  E-value=4.4e-20  Score=164.20  Aligned_cols=108  Identities=17%  Similarity=0.311  Sum_probs=84.9

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+..+|.++++||+|+..++.||||||||++|+.|+++|+|||||.....  ......+..++++|||. ..+..+..|
T Consensus       114 ~~~~~~v~~i~~Hp~y~~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~--~~~~~~~~~~~v~GwG~-~~~~~~~~L  190 (283)
T 3f1s_B          114 DPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFA--EHLLIPRTRGLLSGWAR-NGTDLGNSL  190 (283)
T ss_dssp             CCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHH--HHTTTTTSCEEEEECBC-C-------C
T ss_pred             CcEEEEeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCCEEeEECCCCccc--cccccCCCEEEEEECCC-CCCCCCcee
Confidence            456778999999999999999999999999999999999999999964310  00124578999999998 444568899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|++.    +...++++||||+..
T Consensus       191 ~~~~v~~~~~~~C~~~----~~~~~~~~~~Ca~~~  221 (283)
T 3f1s_B          191 TTRPVTLVEGEECGQV----LNVTVTTRTYCERSS  221 (283)
T ss_dssp             EEEEEEEECHHHHHHH----HTSCCCTTEEEEECS
T ss_pred             eEEEEeEeCHHHHhhh----hcCCCCCCeEcccCC
Confidence            9999999999999865    344689999999854

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=99.80  E-value=1.5e-19  Score=156.52  Aligned_cols=107  Identities=25%  Similarity=0.520  Sum_probs=90.1

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..++.
T Consensus        69 ~~~~~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  143 (235)
T 4dgj_A           69 QTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQV-----FPPGRNCSIAGWGTVVYQGTTADI  143 (235)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESSBSSTTCCBCSB
T ss_pred             ceeEEeEEEEEECCCCCCCCCCCeEEEEEECCccccCCcccccCCCCcccC-----CCCCCEEEEEecccCCCCCccchh
Confidence            345667999999999999999999999999999999999999999976542     3568899999999875 4566889


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+.   ...++++||||+..
T Consensus       144 L~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~~  176 (235)
T 4dgj_A          144 LQEADVPLLSNERCQQQMP---EYNITENMICAGYE  176 (235)
T ss_dssp             CEEEEEEEECHHHHHHHCT---TSCCCTTEEEECCT
T ss_pred             heEeEeeecCHHHhhhhcc---CccCCCCeEeecCC
Confidence            9999999999999986542   22478999999853

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=99.80  E-value=1.4e-19  Score=157.32  Aligned_cols=105  Identities=30%  Similarity=0.429  Sum_probs=90.0

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+..+|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+..
T Consensus        74 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  148 (241)
T 3ncl_A           74 GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHV-----FPAGKAIWVTGWGHTQYGGTGALI  148 (241)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESSBSSTTSCBCSB
T ss_pred             CceEEEEEEEEECCCCCCCCCCCcEEEEEECCCCcccCccCceEcCCcccC-----CCCCCEEEEEEecccCCCCCcCce
Confidence            346778999999999999999999999999999999999999999976532     3468899999999885 3456788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ||++.++++++++|+..    +...++++||||+.
T Consensus       149 l~~~~~~~~~~~~C~~~----~~~~~~~~~~Ca~~  179 (241)
T 3ncl_A          149 LQKGEIRVINQTTCENL----LPQQITPRMMCVGF  179 (241)
T ss_dssp             CEEEEEEECCHHHHHHH----STTTCCTTEEEEEC
T ss_pred             eeEEeEEEECHHHhhhh----cccCCCCCeEEeCC
Confidence            99999999999999865    34468899999975

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=99.80  E-value=1e-19  Score=159.12  Aligned_cols=106  Identities=23%  Similarity=0.392  Sum_probs=89.2

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+...|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. ++..+..|
T Consensus        83 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~L  157 (251)
T 1pyt_D           83 SLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSL-----LPQDYPCFVTGWGRLYTNGPIAAEL  157 (251)
T ss_dssp             CEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEECBCCCSSCCSCCCSBC
T ss_pred             cEEEEEEEEEECCCCCCCCCCCCEEEEEECCCcccCCCeeeeEcCCCccc-----CCCCCEEEEEecccCCCCCCcccch
Confidence            45678999999999999889999999999999999999999999976432     2457889999999885 44567889


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |++.++++++++|+..+.  +...++++||||+.
T Consensus       158 ~~~~~~~~~~~~C~~~~~--~~~~~~~~~~Ca~~  189 (251)
T 1pyt_D          158 QQGLQPVVDYATCSQRDW--WGTTVKETMVCAGG  189 (251)
T ss_dssp             BCCEEECBCHHHHTSTTT--TTTTCCTTEEEECC
T ss_pred             heeEeEeeCHHHcchhhc--cCCCcCCCeEEecC
Confidence            999999999999976431  23458899999985

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=99.80  E-value=6.7e-20  Score=158.90  Aligned_cols=102  Identities=25%  Similarity=0.367  Sum_probs=86.8

Q ss_pred             ceEEEeeeEEEEcCCCCCCCC-----------CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNY-----------LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~-----------~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      ..+...|.++++||+|+....           .||||||||++|+.|+++|+|||||....       ..+..|+++|||
T Consensus        62 ~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~~~~~v~GwG  134 (237)
T 1ao5_A           62 SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEP-------KPGSKCLASGWG  134 (237)
T ss_dssp             SCEECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCC-------CTTCEEEEEESC
T ss_pred             CcEEEEEEEEEcCCCcCcccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCCC-------CCCCEEEEEECC
Confidence            346678999999999987655           89999999999999999999999997542       458899999999


Q ss_pred             CCCC--CCccccceEEEeceeecccccccCccccccCCCCCeEEec
Q psy15989        317 YDEN--DRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAG  360 (363)
Q Consensus       317 ~~~~--~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag  360 (363)
                      .+..  +..++.||++.++++++++|++.+    ...++++||||+
T Consensus       135 ~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~  176 (237)
T 1ao5_A          135 SITPTRWQKPDDLQCVFITLLPNENCAKVY----LQKVTDVMLCAG  176 (237)
T ss_dssp             CSSCC-CCCCSBCEEEEEEEECHHHHHHHC----SSCCCTTEEEEE
T ss_pred             ccCCCCCCCCCcccEEEEEecChhHhhhhh----cccCCCCEEEEc
Confidence            8854  356889999999999999998653    345789999998

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=99.80  E-value=1.5e-19  Score=166.83  Aligned_cols=107  Identities=33%  Similarity=0.552  Sum_probs=89.6

Q ss_pred             eEEEeeeEEEEcCCC------CCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CC
Q psy15989        249 VVFTDVKRVHIYPTF------NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-ND  321 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y------~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~  321 (363)
                      .+...|.++++||+|      +..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+
T Consensus       184 ~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~-----~~~g~~~~v~GWG~t~~~~  258 (372)
T 1z8g_A          184 GLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA-----LVDGKICTVTGWGNTQYYG  258 (372)
T ss_dssp             SEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESSBSSTTS
T ss_pred             CcEEEEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccC-----CCCCCEEEEEecCCCCCCC
Confidence            345789999999999      77788999999999999999999999999975432     3568899999999986 44


Q ss_pred             CccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        322 RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       322 ~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ..+..||++.++++++++|+...  .+...++++|||||++
T Consensus       259 ~~~~~L~~~~v~ii~~~~C~~~~--~~~~~i~~~~iCag~~  297 (372)
T 1z8g_A          259 QQAGVLQEARVPIISNDVCNGAD--FYGNQIKPKMFCAGYP  297 (372)
T ss_dssp             CBCSBCEEEEEEEECHHHHTSTT--TTTTCCCTTEEEESCT
T ss_pred             CCCceeeEEEEEecChHHhCcch--hcCCcCCCCeEeeecC
Confidence            56889999999999999997532  2445688999999864

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=99.80  E-value=1.9e-19  Score=156.31  Aligned_cols=107  Identities=25%  Similarity=0.409  Sum_probs=89.6

Q ss_pred             ceEEEeeeEEEEcCCCCCCCC--CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVS  324 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~--~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~  324 (363)
                      ..+...|.++++||+|+..+.  .||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+
T Consensus        68 ~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~  142 (240)
T 1gvk_B           68 TEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTI-----LANNSPCYITGWGLTRTNGQLA  142 (240)
T ss_dssp             CCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCCEEEEESCBSSTTCCBC
T ss_pred             cceEEEEEEEEECCCCCCCCCCCCCcEEEEEECCccccCCCccceecCCCCCC-----CCCCCEEEEEecCcCCCCCCcc
Confidence            356678999999999998877  899999999999999999999999976432     2467899999999885 44568


Q ss_pred             ccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ..||++.++++++++|+..+.  ++..++++||||+.
T Consensus       143 ~~L~~~~~~~~~~~~C~~~~~--~~~~~~~~~~Ca~~  177 (240)
T 1gvk_B          143 QTLQQAYLPTVDYAICSSSSY--WGSTVKNSMVCAGG  177 (240)
T ss_dssp             SBCEEEECCEECHHHHTSTTT--TGGGCCTTEEEECC
T ss_pred             hhccEEEEEEEcHHHhccccc--cCccCCcceEeecC
Confidence            899999999999999976421  34458899999984

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=99.80  E-value=2.6e-19  Score=156.54  Aligned_cols=107  Identities=26%  Similarity=0.471  Sum_probs=91.6

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++++|||||....       ..+..|+++|||.+..+..+..|
T Consensus        81 ~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~-------~~~~~~~v~GwG~~~~~~~~~~L  153 (251)
T 3gov_B           81 NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQ-------QEGAMVIVSGWGKQFLQRFPETL  153 (251)
T ss_dssp             SCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCC-------CTTCEEEEEECSCCTTSCCCSBC
T ss_pred             cceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCC-------CCCCEEEEEcCCCCCCCCCCccc
Confidence            45667899999999999999999999999999999999999999997543       45789999999998766678899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+.. +...++++||||+..
T Consensus       154 ~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~Ca~~~  187 (251)
T 3gov_B          154 MEIEIPIVDHSTCQKAYAP-LKKKVTRDMICAGEK  187 (251)
T ss_dssp             EEEEEEEECHHHHHHHTTT-TTCCCCTTEEEESCT
T ss_pred             eEEeeEEECHHHhhhhhhh-ccCCCCCCcEEecCC
Confidence            9999999999999876432 133588999999864

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=99.80  E-value=1.2e-19  Score=165.47  Aligned_cols=104  Identities=27%  Similarity=0.485  Sum_probs=86.8

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccce
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELK  328 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~  328 (363)
                      .+...|+++++||+|+    .||||||||++|++|+++|+|||||..+.      ...+..++++|||.++.+..++.||
T Consensus       169 ~~~~~V~~i~~HP~y~----~nDIALlkL~~~v~~~~~v~PicLp~~~~------~~~g~~~~v~GWG~~~~~~~s~~L~  238 (347)
T 4f4o_C          169 KQEVEIEKVIFHPDNS----TVDIGLIKLKQKVPVNERVMPICLPSKDY------VNVGLVGYVSGWGRNANLNFTEHLK  238 (347)
T ss_dssp             TEEECEEEEEECSCTT----TCCCEEEEESSCCCCSSSCCCCBCCSSCC------CCTTCEEEEEECSBCTTSSBCSSCE
T ss_pred             eEEEEEEEEEECcCCC----CCCEEEEEECCCccCCCceeeeecCcccc------CCCCcEEEEeccccCCCCCCCccce
Confidence            3567899999999996    58999999999999999999999997653      2568899999999988777889999


Q ss_pred             EEEeceeecccccccCccc-------------cccCCCCCeEEeccC
Q psy15989        329 MAIMPIVSHQQCLWSNPQF-------------FSQFTSDETFCAGFR  362 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~~~~~-------------~~~~i~~~~iCag~~  362 (363)
                      ++.++++++++|++.+...             +...++++|||||..
T Consensus       239 ~~~v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~  285 (347)
T 4f4o_C          239 YVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLS  285 (347)
T ss_dssp             EEEEEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCC
T ss_pred             EEEEEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCC
Confidence            9999999999997654221             123478999999864

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=99.80  E-value=1.5e-19  Score=155.28  Aligned_cols=103  Identities=21%  Similarity=0.375  Sum_probs=88.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC--CCCccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE--NDRVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~--~~~~~~  325 (363)
                      ..+...|.++++||+|+..+..||||||||++|+.|+++|+|||||....       ..+..|+++|||.+.  ....+.
T Consensus        60 ~~~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~  132 (224)
T 2qxi_A           60 RAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE-------PPGTTCTVSGWGTTTSPDVTFPS  132 (224)
T ss_dssp             TSEEEEECEEEECTTCCTTTCTTCCEEEECSSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEESSCSSSSSCCCCS
T ss_pred             ccEEEEEEEEEECCCCCCCCCcCcEEEEEeCCCCcCCCceeeEECCCCCC-------CCCCEEEEEeCCccCCCCCCCCh
Confidence            34667899999999999989999999999999999999999999997542       457899999999884  235678


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .||++.++++++++|+..    |...+.++||||+.
T Consensus       133 ~L~~~~~~~~~~~~C~~~----~~~~~~~~~~Ca~~  164 (224)
T 2qxi_A          133 DLMCVDVKLISPQDCTKV----YKDLLENSMLCAGI  164 (224)
T ss_dssp             BCEEEEEEEECHHHHHHH----HGGGCCTTEEEEEC
T ss_pred             hheEEEeeecCHHHhhHH----hcCcCCCCeEEecC
Confidence            999999999999999765    33457899999985

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=99.79  E-value=1.5e-19  Score=157.04  Aligned_cols=106  Identities=22%  Similarity=0.491  Sum_probs=88.3

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+..+|.++++||+|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+..|
T Consensus        71 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~L  145 (241)
T 2any_A           71 TPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDT-----STIYTNCWVTGWGFSKEKGEIQNIL  145 (241)
T ss_dssp             SCCBCEEEEEECTTCCTTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSCC-----STTCSEEEEEESSCSSTTCCCCSBC
T ss_pred             ceEEeeEEEEECCCCCCCCCCCCeEEEEeCCcccCCCCcceeEcCCcccC-----CCCCCeEEEEecccCCCCCCcCchh
Confidence            34567999999999999889999999999999999999999999975432     2457899999999885 34567899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+..   ..++++||||+..
T Consensus       146 ~~~~~~~~~~~~C~~~~~~---~~~~~~~~Ca~~~  177 (241)
T 2any_A          146 QKVNIPLVTNEECQKRYQD---YKITQRMVCAGYK  177 (241)
T ss_dssp             EEEEEEEECHHHHHTTSCT---TCSCTTEEEECCT
T ss_pred             heeEeEEeCHHHhhhHhcc---CCCCcCcEeecCC
Confidence            9999999999999865422   2378999999853

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=99.79  E-value=1.8e-19  Score=156.93  Aligned_cols=105  Identities=27%  Similarity=0.450  Sum_probs=88.6

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Cccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~  325 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+...  ..++
T Consensus        79 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  153 (245)
T 1t8o_A           79 KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDD-----FAAGTTCVTTGWGLTRYTNANTPD  153 (245)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESCCSCC--CCCCS
T ss_pred             CcEEEEEEEEEeCCCCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCccC-----CCCCCEEEEEEeCCCCCCCCCCcc
Confidence            346678999999999999899999999999999999999999999975432     246889999999988532  2578


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .||++.++++++++|++.    +...+++.||||+.
T Consensus       154 ~L~~~~~~~~~~~~C~~~----~~~~~~~~~~Ca~~  185 (245)
T 1t8o_A          154 RLQQASLPLLSNTNCKKY----WGTKIKDAMICAGA  185 (245)
T ss_dssp             BCEEEEEEEECHHHHHHH----HGGGCCTTEEEEEC
T ss_pred             hheEEEEeeEcchhhhHh----hcCcCCCceEEccC
Confidence            999999999999999764    34457899999973

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=99.79  E-value=1.7e-19  Score=167.15  Aligned_cols=109  Identities=24%  Similarity=0.346  Sum_probs=89.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC---CCcc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN---DRVS  324 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~---~~~~  324 (363)
                      +.+...|+++++||+|+..++.||||||||++|+.|+++|+|||||.....      ..+..|+++|||.++.   +..+
T Consensus       208 ~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~------~~~~~~~v~GWG~t~~~~~~~~s  281 (394)
T 2b9l_A          208 PYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQI------FDSTECFASGWGKKEFGSRHRYS  281 (394)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCC------CCCSCEEEEECCTTTTTCTTSSC
T ss_pred             ccEEEEEEEEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCcccC------ccCCEEEEEeccCccCCCCCccc
Confidence            356788999999999999899999999999999999999999999975432      3468899999998853   2357


Q ss_pred             ccceEEEeceeecccccccCccc-c--ccCCCCCeEEeccC
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQF-F--SQFTSDETFCAGFR  362 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~-~--~~~i~~~~iCag~~  362 (363)
                      +.||++.++++++++|+..+... +  ...++++|||||..
T Consensus       282 ~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~  322 (394)
T 2b9l_A          282 NILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGE  322 (394)
T ss_dssp             CBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCB
T ss_pred             ccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCC
Confidence            89999999999999998654321 1  12478999999853

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=99.79  E-value=3.3e-19  Score=154.36  Aligned_cols=103  Identities=22%  Similarity=0.353  Sum_probs=87.7

Q ss_pred             ceEEEeeeEEEEcCCCCC-----------CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        248 YVVFTDVKRVHIYPTFNS-----------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~-----------~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      ..+...|.++++||+|+.           ....||||||||++|+.|+++|+|||||....       ..+..|+++|||
T Consensus        60 ~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~~~~~v~GwG  132 (235)
T 1ton_A           60 FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEP-------KVGSTCLASGWG  132 (235)
T ss_dssp             TCEEECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCC-------CTTCEEEEEESS
T ss_pred             cceEEEEEEEEeCCCCcccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCCC-------CCCCEEEEEecC
Confidence            356678999999999987           67889999999999999999999999997542       458899999999


Q ss_pred             CCCC--CCccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        317 YDEN--DRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       317 ~~~~--~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .+..  +..+..||++.++++++++|+..    |...++++||||+.
T Consensus       133 ~~~~~~~~~~~~L~~~~~~~~~~~~C~~~----~~~~~~~~~~Ca~~  175 (235)
T 1ton_A          133 STNPSEMVVSHDLQCVNIHLLSNEKCIET----YKDNVTDVMLCAGE  175 (235)
T ss_dssp             CSSSSSCCCCSBCEEEEEEEECGGGCGGG----GSTTGGGGEEEEEC
T ss_pred             CCCCCCCccCccceEEEEEEeCHHHHHHH----hcCcCCCCeEeecc
Confidence            8853  35678999999999999999865    33457889999985

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=99.79  E-value=2.1e-19  Score=154.76  Aligned_cols=102  Identities=20%  Similarity=0.345  Sum_probs=87.3

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Ccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~~  326 (363)
                      .+..+|.++++||+|+..++.||||||||++|+.|+++|+|||||...       ...+..|+++|||.+...  ..++.
T Consensus        65 ~~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~-------~~~~~~~~v~GwG~~~~~~~~~~~~  137 (227)
T 2psx_A           65 QQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHC-------PSAGTKCLVSGWGTTKSPQVHFPKV  137 (227)
T ss_dssp             CEEEEEEEEEECTTCCSSSCTTCCEEEEESSCCCCCSSSCCCCBCSSC-------CCTTCEEEEEESSCSSSSSCCCCSB
T ss_pred             cEEEEEEEEEeCCCCCCCCCCCCEEEEEeCCCCCCCCceeeeECCCCC-------CCCCCEEEEEeCcccCCCCCCCCch
Confidence            456789999999999998899999999999999999999999998543       245789999999988533  46789


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ||++.++++++++|+..+    ...++++||||+.
T Consensus       138 L~~~~~~i~~~~~C~~~~----~~~~~~~~~Ca~~  168 (227)
T 2psx_A          138 LQCLNISVLSQKRCEDAY----PRQIDDTMFCAGD  168 (227)
T ss_dssp             CEEEEEEBCCHHHHHHHS----TTTCCTTEEEECC
T ss_pred             heEEEEEecCHhHhhhhc----CCCCCCCEEcccC
Confidence            999999999999998653    3357899999985

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=99.79  E-value=1.2e-19  Score=157.44  Aligned_cols=106  Identities=29%  Similarity=0.522  Sum_probs=87.9

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+...|.++++||+|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..++.|
T Consensus        71 ~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~L  145 (238)
T 3bg8_A           71 TSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGER-----NVIYTDCWVTGWGYRKLRDKIQNTL  145 (238)
T ss_dssp             SCCEEEEEEEECTTCCCGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGGG-----SSCCCCEEEEESCCSSSSCCCCSBC
T ss_pred             ceEEeeEEEEECCCCCCCCCCCcEEEEEECCccccCCCcccCCCCCCccC-----cCCCCeEEEEecCCCCCCCChhhhh
Confidence            34567999999999998888999999999999999999999999965421     2457889999999875 34467899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+.   ...++++||||+..
T Consensus       146 ~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~~  177 (238)
T 3bg8_A          146 QKAKIPLVTNEECQKRYR---GHKITHKMICAGYR  177 (238)
T ss_dssp             EEEECCEECHHHHHHHCT---TSCCCTTEEEECCT
T ss_pred             cEeeEEEECHHHhhhhhc---CCCCCCCeEeecCC
Confidence            999999999999986542   22478999999853

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=99.79  E-value=2.4e-19  Score=154.15  Aligned_cols=104  Identities=23%  Similarity=0.328  Sum_probs=87.4

Q ss_pred             ceEEEeeeEEEEcCCC-CC--CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC--CCC
Q psy15989        248 YVVFTDVKRVHIYPTF-NS--SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE--NDR  322 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y-~~--~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~--~~~  322 (363)
                      ..+...|.++++||+| +.  ....||||||||++|+.|+++|+|||||....       ..+..|+++|||.+.  .+.
T Consensus        62 ~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~-------~~~~~~~v~GwG~~~~~~~~  134 (225)
T 1npm_A           62 PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCP-------KVGQKCIISGWGTVTSPQEN  134 (225)
T ss_dssp             CCEEECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCC-------CTTCEEEEEESSCSSSSSCC
T ss_pred             CcEEEEEEEEEECCCCCCCCccCccccEEEEeeCCcccCCCceeceECCCCCC-------CCCCEEEEEeCCcccCCCCC
Confidence            3566789999999999 55  67789999999999999999999999986542       457899999999873  345


Q ss_pred             ccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        323 VSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       323 ~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .++.||++.++++++++|+..+    ...++++||||+..
T Consensus       135 ~~~~L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~~  170 (225)
T 1npm_A          135 FPNTLNCAEVKIYSQNKCERAY----PGKITEGMVCAGSS  170 (225)
T ss_dssp             CCSBCEEEEEEECCHHHHHHHS----TTTCCTTEEEEECT
T ss_pred             CCccceEeEEeeecHHHhhHHh----CCCCCCCEEeecCC
Confidence            6889999999999999998653    34578999999863

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=99.79  E-value=5e-19  Score=154.85  Aligned_cols=108  Identities=29%  Similarity=0.360  Sum_probs=89.5

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecce----eecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--  321 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~----v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--  321 (363)
                      ..+...|.++++||+|+..++.||||||||++|    +.|+++|+|||||.....     ...+..|+++|||.++..  
T Consensus        73 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~  147 (252)
T 1rtf_B           73 EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQ-----LPDWTECELSGYGKHEALSP  147 (252)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESCCSSTTCS
T ss_pred             cceEEEEEEEEeCCCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCcccc-----CCCCCEEEEEEcCCCCCCCc
Confidence            346678999999999999999999999999999    999999999999975432     245788999999988643  


Q ss_pred             CccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        322 RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       322 ~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ..+..||++.++++++++|+..+.  +...++++||||+..
T Consensus       148 ~~~~~L~~~~~~~~~~~~C~~~~~--~~~~~~~~~~Ca~~~  186 (252)
T 1rtf_B          148 FYSERLKEAHVRLYPSSRCTSQHL--LNRTVTDNMLCAGDT  186 (252)
T ss_dssp             SCCSBCEEEEEEECCGGGSSTTTT--TTCCCCTTEEEEECC
T ss_pred             cccchheEeeeEEecHHHhhhhhc--cCCCCCCCEEEecCC
Confidence            357899999999999999986432  234578999999753

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=99.79  E-value=1.7e-19  Score=156.66  Aligned_cols=105  Identities=21%  Similarity=0.296  Sum_probs=88.2

Q ss_pred             EEEeeeEEEEcCCCCCCCCC--CceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        250 VFTDVKRVHIYPTFNSSNYL--GDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~--nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      +...|.++++||+|+..+..  ||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+..
T Consensus        70 ~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  144 (240)
T 1fon_A           70 IPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDI-----LPNEAPCYISGWGRLYTGGPLPDK  144 (240)
T ss_dssp             EEECTTSEEECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCC-----CCTTCCCEEEECTTCCCSSSCCSB
T ss_pred             EeeeeeEEEECCCCcCCCccCCCCEEEEEecCccccCCcccccCCCCcccC-----CCCCCeEEEEEEeEcCCCCCCChh
Confidence            56688999999999988777  99999999999999999999999976432     2467889999999885 4456889


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ||++.++++++++|++.+.  ++..++++||||+.
T Consensus       145 L~~~~~~~~~~~~C~~~~~--~~~~~~~~~~Ca~~  177 (240)
T 1fon_A          145 LQQALLPTVDYEHCSQWDW--WGITVKKTMVCAGG  177 (240)
T ss_dssp             CEEEECCEECHHHHTSTTT--TGGGCCTTEEEECC
T ss_pred             heEEEEeeeCHHHhcccee--cCCccccceEeecC
Confidence            9999999999999976421  34457899999984

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=99.79  E-value=2.8e-19  Score=155.05  Aligned_cols=103  Identities=25%  Similarity=0.412  Sum_probs=86.7

Q ss_pred             ceEEEeeeEEEEcCCCC-----------CCCCCCceEEEeecceee-cccceEeeeeCCCCCCccccccccCCcEEEEEe
Q psy15989        248 YVVFTDVKRVHIYPTFN-----------SSNYLGDIALLQLSSDVD-YSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGW  315 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~-----------~~~~~nDIall~L~~~v~-~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GW  315 (363)
                      ..+...|.++++||+|+           ...+.||||||||++|+. |++.|+|||||....       ..+..|+++||
T Consensus        62 ~~~~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~-------~~~~~~~v~Gw  134 (238)
T 1spj_A           62 TAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEP-------EVGSTCLASGW  134 (238)
T ss_dssp             TCEEECEEEEEECTTSCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCC-------CTTCEEEEEES
T ss_pred             CceEEEEEEEEcCCCccccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCCC-------CCCCEEEEEec
Confidence            45677899999999998           456789999999999999 999999999996543       35789999999


Q ss_pred             cCCCCC--CccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        316 GYDEND--RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       316 G~~~~~--~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |.+...  ..+..||++.++++++++|+..+    ...+++.||||+.
T Consensus       135 G~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  178 (238)
T 1spj_A          135 GSIEPENFSFPDDLQCVDLKILPNDECKKAH----VQKVTDFMLCVGH  178 (238)
T ss_dssp             SCSSSSSCCCCSBCEEEEEEEECHHHHHHHC----SSCCCTTEEEEEC
T ss_pred             CCCCCCCCCCcCcccEEEEeecCHHHhhhhc----cCCCCCCeEEeeC
Confidence            988532  46789999999999999997653    3357899999985

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=99.79  E-value=6.7e-19  Score=151.48  Aligned_cols=105  Identities=22%  Similarity=0.304  Sum_probs=85.7

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|++.++|||||.....     ...+..|+++|||.+. .+..+..
T Consensus        66 ~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  140 (226)
T 4ag1_A           66 TWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF-----VPPGRMCRVAGWGRTGVLKPGSDT  140 (226)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSSCCCCCC----------CCTTCEEEEEESSBSSTTSCBCSB
T ss_pred             cceEEEEEEEEeCCCCCCCCCcCcEEEEEECCCCccCCceeccccCCcccC-----CCCCCEEEEEECCCCCCCCCCCCE
Confidence            346678999999999999999999999999999999999999999975432     3568899999999885 3446789


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..     .....+.||||+.+
T Consensus       141 L~~~~~~~~~~~~C~~~-----~~~~~~~~~Ca~~~  171 (226)
T 4ag1_A          141 LQEVKLRLMDPQACSHF-----RDFDHNLQLCVGNP  171 (226)
T ss_dssp             CEEEEEEEECGGGGTTS-----TTCCTTTEEEESCT
T ss_pred             eEEEEEEEcChHHcccc-----cCcCccceEeeccC
Confidence            99999999999999732     22357889999863

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=99.79  E-value=3.3e-19  Score=154.61  Aligned_cols=106  Identities=17%  Similarity=0.332  Sum_probs=88.5

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-Cc-cc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-RV-SE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-~~-~~  325 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||.....      ..+..|+++|||.+..+ .. +.
T Consensus        68 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~------~~~~~~~~~GwG~~~~~~~~~~~  141 (238)
T 1ym0_A           68 VRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPAND------YVYRKSQCSGWGTINSGGVCCPA  141 (238)
T ss_dssp             SCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCC------CTTCEEEEEESCCSSTTCCSCCS
T ss_pred             CceEEEEEEEEECCCCCCCCCcccEEEEEeCCCccccCcccccCCCCCcCC------CCCCceEEEeecCCCCCCCcCCc
Confidence            356778999999999999889999999999999999999999999975432      25788999999988643 33 78


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .||++.++++++++|+..+.   ...+.++||||+..
T Consensus       142 ~l~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~~  175 (238)
T 1ym0_A          142 VLRYVTLNITTNAFCDAVYT---SDTIYDDMICATDN  175 (238)
T ss_dssp             BCEEEEEEECCHHHHHHHCT---TSCCCTTEEEEECS
T ss_pred             cceEEEEEeeCHHHHhHhhc---ccccCCCeEEecCC
Confidence            99999999999999986532   22578999999753

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=99.79  E-value=4.3e-19  Score=152.22  Aligned_cols=102  Identities=19%  Similarity=0.359  Sum_probs=86.5

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+..+|+++++||+|+..++.||||||||++|+.|+++|+|||||.....      ..+..|+++|||.+. .+..++.|
T Consensus        65 ~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~------~~~~~~~v~GwG~~~~~~~~~~~L  138 (222)
T 1eq9_A           65 GDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDED------LESNPCTLTGWGSTRLGGNTPNAL  138 (222)
T ss_dssp             CEEEEEEEEEECTTCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTT------CTTSEEEEEECCCSSTTCCCCSBC
T ss_pred             CeEEEEEEEEECCCCCCCCCCCCEEEEEECCccccCCceEccCCCCCCcC------CCCCEEEEEcccccCCCCcccchh
Confidence            45678999999999999889999999999999999999999999976531      457889999999885 34567899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |++.++++++++|++..   +.  +.++||||+.
T Consensus       139 ~~~~~~~~~~~~C~~~~---~~--~~~~~~Ca~~  167 (222)
T 1eq9_A          139 QEIELIVHPQKQCERDQ---WR--VIDSHICTLT  167 (222)
T ss_dssp             EEEEEEEECHHHHHHHS---SS--CCTTEEEECC
T ss_pred             eEeEEEEeCHHHhCccc---CC--CCccEEeecC
Confidence            99999999999997321   22  6789999975

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=99.79  E-value=4.6e-19  Score=152.72  Aligned_cols=106  Identities=23%  Similarity=0.330  Sum_probs=88.2

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+..+|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..++.|
T Consensus        67 ~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~-----~~~g~~~~v~GwG~~~~~~~~~~~l  141 (228)
T 2xw9_A           67 KRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRD-----VAPGTLCDVAGWGIVNHAGRRPDSL  141 (228)
T ss_dssp             CEEEEEEEEEECTTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCC-----CCTTC-CEEEESSCCSTTCCCCSBC
T ss_pred             ceEEEEEEEEeCCCCCCCCCCCcEEEEEeCCCcccCCCeeecccCCcccC-----CCCCCEEEEEEecccCCCCCCCchh
Confidence            46678999999999999999999999999999999999999999975432     3568899999999885 44568899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |++.++++++++|++.+..  ...++++||||+.
T Consensus       142 ~~~~~~~~~~~~C~~~~~~--~~~~~~~~~Ca~~  173 (228)
T 2xw9_A          142 QHVLLPVLDRATCNRRTHH--DGAITERLMCAES  173 (228)
T ss_dssp             EEEECCEECHHHHTSTTTT--TTCCCTTEEEECC
T ss_pred             eEEEEEEcChhHhcCcccc--CCcccCCEEecCC
Confidence            9999999999999865321  2357899999974

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=99.79  E-value=5.7e-19  Score=153.33  Aligned_cols=105  Identities=20%  Similarity=0.402  Sum_probs=87.4

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-C-cccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-R-VSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-~-~~~~  326 (363)
                      .+...|.++++||+|+.....||||||||++|+.|+++|+|||||....      ...+..|+++|||.+..+ . .+..
T Consensus        70 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~------~~~~~~~~v~GwG~~~~~~~~~~~~  143 (240)
T 1mza_A           70 KQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTS------LRSGTKCKVTGWGATDPDSLRPSDT  143 (240)
T ss_dssp             CEEEEEEEEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCC------CCTTCEEEEEECCCSSTTCSSCCSB
T ss_pred             eEEEEEEEEEeCCCccCCCCCceEEEEEeCCCcccCCceeeeecCCccc------CCCCCEEEEEeCCcCCCCCCCcccc
Confidence            4667899999999999988999999999999999999999999997422      256889999999988643 3 5789


Q ss_pred             ceEEEeceeecccccccCcccccc--CCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQ--FTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~--~i~~~~iCag~  361 (363)
                      ||++.++++++++|+...  .|..  .++++||||+.
T Consensus       144 L~~~~~~i~~~~~C~~~~--~~~~~~~~~~~~~Ca~~  178 (240)
T 1mza_A          144 LREVTVTVLSRKLCNSQS--YYNGDPFITKDMVCAGD  178 (240)
T ss_dssp             CEEEEEEECCHHHHTSTT--TTTTTTCCCTTEEEEEC
T ss_pred             ceEeEEEEeCHHHcCCcc--eeCCCCcCCCCeEeecC
Confidence            999999999999997321  1222  57899999985

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.79  E-value=3.8e-19  Score=152.71  Aligned_cols=103  Identities=24%  Similarity=0.466  Sum_probs=88.6

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Cccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~  325 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++++|||||....       ..+..|+++|||.+...  ..+.
T Consensus        61 ~~~~~~v~~~~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~  133 (223)
T 4i8h_A           61 NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-------SAGTQCLISGWGNTKSSGTSYPD  133 (223)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-------CTTCEEEEEESSCCCSSSCCCCS
T ss_pred             CcEEEEEeEEEECcCCCCCCCcCCEEEEEECCcCcCCCceeceECCCCCC-------CCCCEEEEEecccccCCCCCccc
Confidence            34667899999999999999999999999999999999999999997542       45889999999987532  4578


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .|+++.++++++++|+..    +...++++||||+.
T Consensus       134 ~l~~~~~~~~~~~~C~~~----~~~~~~~~~~Ca~~  165 (223)
T 4i8h_A          134 VLKCLKAPILSDSSCKSA----YPGQITSNMFCAGY  165 (223)
T ss_dssp             SCEEEEEEBCCHHHHHHH----STTTCCTTEEEESC
T ss_pred             cceEEEeeecCHHHHHHh----hCCCCCCCeEeccC
Confidence            899999999999999865    34468899999975

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=99.78  E-value=1.7e-19  Score=167.76  Aligned_cols=109  Identities=25%  Similarity=0.379  Sum_probs=89.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      +.+...|+++++||+|+..++.||||||||++|+.|+++|+|||||.....  ......+..++++|||.++.+..++.|
T Consensus       200 ~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~--~~~~~~~~~~~v~GWG~t~~~~~s~~L  277 (408)
T 2xxl_A          200 PVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDEL--KEKAEQISTYFVTGWGTTENGSSSDVL  277 (408)
T ss_dssp             CCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCSHHH--HHHTTTCSEEEEEECCCBTTBCSCSBC
T ss_pred             ceEEEeEEEEEeCCCCCccccccceEEEEECCccccccCccccCCCCcccc--cccccCCCEEEEEEeCcCCCCCCCchh
Confidence            346678999999999999899999999999999999999999999965320  001245788999999998765578999


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+    ...+..+|||||..
T Consensus       278 ~~~~v~iv~~~~C~~~~----~~~~~~~~iCAg~~  308 (408)
T 2xxl_A          278 LQANVPLQPRSACSQAY----RRAVPLSQLCVGGG  308 (408)
T ss_dssp             EEEEEEEECHHHHHHHH----TSCCCTTEEEECCS
T ss_pred             eEeeeeecCHHHHHHHh----cccCCCceEeecCC
Confidence            99999999999998653    22356689999864

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=99.78  E-value=1.6e-19  Score=163.88  Aligned_cols=106  Identities=30%  Similarity=0.492  Sum_probs=85.9

Q ss_pred             EEeeeEEEEcCCCCCC---CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        251 FTDVKRVHIYPTFNSS---NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       251 ~~~V~~ii~h~~y~~~---~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ...|+++++||+|+..   ++.||||||||++|+.|+++|+|||||.....     ...+..++++|||.++.. .+..|
T Consensus       160 ~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~-----~~~g~~~~v~GWG~t~~~-~~~~L  233 (329)
T 1md8_A          160 NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-----YDLGLMGYVSGFGVMEEK-IAHDL  233 (329)
T ss_dssp             CCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGG-----GCTTCEEEEEECCBCSSS-BCSBC
T ss_pred             ceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccc-----cCCCCEEEEEeCCCCCCC-CCccc
Confidence            3478999999999864   67899999999999999999999999965421     245788999999988654 67899


Q ss_pred             eEEEeceeecccccccCcccc-ccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFF-SQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~-~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|++.+.... ...++++|||||..
T Consensus       234 ~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~  269 (329)
T 1md8_A          234 RFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHP  269 (329)
T ss_dssp             EEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCT
T ss_pred             eEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecC
Confidence            999999999999986432111 22478999999864

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=99.78  E-value=3.8e-19  Score=166.20  Aligned_cols=112  Identities=23%  Similarity=0.379  Sum_probs=91.0

Q ss_pred             ceEEEeeeEEEEcCCCCCC-CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSS-NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~-~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~  326 (363)
                      ..+...|.++++||+|+.. ++.||||||||++|+.|+++|+|||||......   ....+..++++|||.+..+..+..
T Consensus       225 ~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~---~~~~~~~~~v~GWG~~~~~~~~~~  301 (403)
T 1zjk_A          225 HYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAES---FMRTDDIGTASGWGLTQRGFLARN  301 (403)
T ss_dssp             CCEEEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGG---GSSTTCEEEEEESCTTSSSCCCSB
T ss_pred             CceEEeEEEEEECCCCCCCCCCcccEEEEEeCCcCcCCCceecccCCCccccc---ccCCCCeEEEEcCCcCCCCccCcc
Confidence            3466789999999999987 789999999999999999999999999654210   124578899999999876667889


Q ss_pred             ceEEEeceeecccccccCccc--cccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQF--FSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~--~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+...  ....++++|||||..
T Consensus       302 L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~  339 (403)
T 1zjk_A          302 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE  339 (403)
T ss_dssp             CEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCS
T ss_pred             cEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccC
Confidence            999999999999998654321  112588999999864

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=99.78  E-value=4.1e-19  Score=161.70  Aligned_cols=106  Identities=27%  Similarity=0.457  Sum_probs=84.1

Q ss_pred             eeEEEEcCCCCC-------CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCcccc
Q psy15989        254 VKRVHIYPTFNS-------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEE  326 (363)
Q Consensus       254 V~~ii~h~~y~~-------~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~  326 (363)
                      +.++++||+|+.       .++.||||||||++|+.|+++|+|||||.....   .....+..|+++|||.++.+..+..
T Consensus       150 v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~---~~~~~g~~~~v~GWG~t~~~~~~~~  226 (333)
T 1elv_A          150 PEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSD---YNLMDGDLGLISGWGRTEKRDRAVR  226 (333)
T ss_dssp             EEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGG---GCCCTTCEEEEEESCCCSSCSSCSB
T ss_pred             cceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCccc---ccccCCcEEEEEECcCcCCCCcCce
Confidence            399999999984       567899999999999999999999999965421   1124588999999999876656889


Q ss_pred             ceEEEeceeecccccccCcccc-----ccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFF-----SQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~-----~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+....     ...++++|||||..
T Consensus       227 L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~  267 (333)
T 1elv_A          227 LKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGE  267 (333)
T ss_dssp             CEEEEEEEECHHHHHTC----------CCCCCTTEEEEECS
T ss_pred             eEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCC
Confidence            9999999999999986542110     12478999999864

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=99.78  E-value=6.5e-19  Score=152.55  Aligned_cols=107  Identities=26%  Similarity=0.338  Sum_probs=89.1

Q ss_pred             ceEEEeeeEEEEcCCCCCCCC--CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVS  324 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~--~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~  324 (363)
                      ..+...|.++++||+|+....  .||||||||++|+.|++.|+|||||.....     ...+..|+++|||.+. .+..+
T Consensus        68 ~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~-----~~~~~~~~v~GwG~~~~~~~~~  142 (236)
T 1elt_A           68 KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQI-----LPNNNPCYITGWGKTSTGGPLS  142 (236)
T ss_dssp             CCEEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCC-----CCTTCCEEEEESCCSSTTCCCC
T ss_pred             CcEEEEEEEEEECCCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCCcccc-----CCCCCEEEEEeCCCcCCCCCcC
Confidence            346678999999999998877  899999999999999999999999976432     2467889999999885 44567


Q ss_pred             ccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ..||++.++++++++|+..+.  ++..++++||||+.
T Consensus       143 ~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~~Ca~~  177 (236)
T 1elt_A          143 DSLKQAWLPSVDHATCSSSGW--WGSTVKTTMVCAGG  177 (236)
T ss_dssp             SBCEEEECCEECHHHHTSTTT--TGGGSCTTEEEECC
T ss_pred             hhheEeEeeecCHHHhccccc--cCCcCCcceEEecC
Confidence            899999999999999986421  34457899999974

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=99.78  E-value=3.5e-19  Score=154.34  Aligned_cols=103  Identities=21%  Similarity=0.270  Sum_probs=86.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCC-----------CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNY-----------LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~-----------~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      ..+..+|.++++||+|+...+           .||||||||++|+.|+++|+|||||....       ..+..|+++|||
T Consensus        62 ~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~~-------~~~~~~~v~GwG  134 (237)
T 2zch_P           62 TGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEP-------ALGTTCYASGWG  134 (237)
T ss_dssp             TCEEEEEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-------CTTCEEEEEESC
T ss_pred             CcEEEEEEEEecCCCcchhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCCC-------CCCCEEEEEeCC
Confidence            346678999999999987655           78999999999999999999999997542       457899999999


Q ss_pred             CCCCC-C-ccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        317 YDEND-R-VSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       317 ~~~~~-~-~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .+..+ . .+..||++.++++++++|+..+    ...+++.||||+.
T Consensus       135 ~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  177 (237)
T 2zch_P          135 SIEPEEFLTPKKLQCVDLHVISNDVCAQVH----PQKVTKFMLCAGR  177 (237)
T ss_dssp             CSSSSSCCCCSBCEEEEEEEECHHHHHHHC----SSBCCTTEEEEEC
T ss_pred             ccCCCCCcCCcccEEeEEEEeCHHHhcccc----cCCCCceEEeecC
Confidence            88533 2 3788999999999999998653    3357889999985

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=99.78  E-value=2.3e-19  Score=156.00  Aligned_cols=106  Identities=30%  Similarity=0.492  Sum_probs=85.7

Q ss_pred             EEeeeEEEEcCCCCCC---CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        251 FTDVKRVHIYPTFNSS---NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       251 ~~~V~~ii~h~~y~~~---~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ...|.++++||+|+..   ++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.++.. .+..|
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~-~~~~L  144 (242)
T 2qy0_B           71 NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-----YDLGLMGYVSGFGVMEEK-IAHDL  144 (242)
T ss_dssp             CCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGG-----GCTTCEEEEEECCCCSSS-CCSBC
T ss_pred             ceeEEEEEECCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCccc-----cCCCCeEEEEeeccCCCc-CCccc
Confidence            3578999999999865   67899999999999999999999999965421     245788999999988644 67889


Q ss_pred             eEEEeceeecccccccCcccc-ccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFF-SQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~-~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+.... ...++++||||+.+
T Consensus       145 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~  180 (242)
T 2qy0_B          145 RFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHP  180 (242)
T ss_dssp             EEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCT
T ss_pred             eEEEEEEeCHHHHHHHhccccccccCCCCEEeccCC
Confidence            999999999999986432111 12478899999864

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=99.78  E-value=4.9e-19  Score=153.85  Aligned_cols=109  Identities=17%  Similarity=0.336  Sum_probs=88.1

Q ss_pred             ceEEEeeeEEEEcCCC--CCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcc
Q psy15989        248 YVVFTDVKRVHIYPTF--NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVS  324 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y--~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~  324 (363)
                      ..+..+|.++++||+|  +..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.++ .+..+
T Consensus        68 ~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~  142 (241)
T 1m9u_A           68 GTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNN-----DYAGTTCVISGWGRTDGTNNLP  142 (241)
T ss_dssp             TCEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSC-----CCTTCEEEEEESSCSSSSSCCC
T ss_pred             CceEEEEEEEEeCCCcCCCCCcccccEEEEEecCccccCCCccccCcCCCcCC-----CCCCCEEEEEeCcccCCCCCcc
Confidence            3567789999999999  77778999999999999999999999999976221     1368899999999986 34568


Q ss_pred             ccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ..||++.++++++++|+..+.......+.++||||+.
T Consensus       143 ~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~  179 (241)
T 1m9u_A          143 DILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQD  179 (241)
T ss_dssp             SBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEEECC
T ss_pred             cceeEeeEEEEcHHHhhhhhcccCCCcccCCcEEECc
Confidence            8999999999999999764321111127899999986

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=99.78  E-value=7.2e-19  Score=152.38  Aligned_cols=103  Identities=21%  Similarity=0.306  Sum_probs=87.8

Q ss_pred             ceEEEeeeEEEEcCCCCCCCC-----------CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNY-----------LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~-----------~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      ..+...|.++++||+|+....           .||||||||++|+.|+++|+|||||....       ..+..|+++|||
T Consensus        62 ~~~~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~-------~~~~~~~v~GwG  134 (237)
T 1gvz_A           62 TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEP-------KLGSTCYTSGWG  134 (237)
T ss_dssp             TCEEECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEEEE
T ss_pred             CceEEEeeeEecCCccCcccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCCC-------CCCCEEEEECCC
Confidence            356788999999999987766           89999999999999999999999997542       457899999999


Q ss_pred             CCC--CCCccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        317 YDE--NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       317 ~~~--~~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .+.  .+..+..||++.++++++++|+..+    ...+++.||||+.
T Consensus       135 ~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  177 (237)
T 1gvz_A          135 LISTFTNRGSGTLQCVELRLQSNEKCARAY----PEKMTEFVLCATH  177 (237)
T ss_dssp             CSCTTTCSEEEEEEEEEEEEECGGGGCSSC----GGGCCTTEEEEEC
T ss_pred             cccCCCCCCCCccEEEEEeEeChhHhhhhh----hhcCCCceEEEee
Confidence            873  3456889999999999999998653    3457899999986

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=99.78  E-value=5.2e-19  Score=153.72  Aligned_cols=110  Identities=24%  Similarity=0.397  Sum_probs=89.8

Q ss_pred             EEEeeeEEEEcCCCCC-CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccce
Q psy15989        250 VFTDVKRVHIYPTFNS-SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELK  328 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~-~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~  328 (363)
                      +...|.++++||+|+. ..+.||||||||++|+.|+++|+|||||......   ....+..|+++|||.+..+..+..|+
T Consensus        66 ~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~---~~~~~~~~~~~GwG~~~~~~~~~~l~  142 (242)
T 3tvj_B           66 TQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAES---FMRTDDIGTASGWGLTQRGFLARNLM  142 (242)
T ss_dssp             EEEEEEEEEECTTCCTTSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGG---GSCTTCEEEEEESCCCTTSSCCSBCE
T ss_pred             ceeeEEEEEeCCCCCCCCCCcCcEEEEEECCccccCCCEecCCcCCCcccc---cccCCCEEEEEEeCCCCCCCcCccce
Confidence            5567899999999997 6788999999999999999999999999764311   13567899999999987677788999


Q ss_pred             EEEeceeecccccccCccc--cccCCCCCeEEeccC
Q psy15989        329 MAIMPIVSHQQCLWSNPQF--FSQFTSDETFCAGFR  362 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~~~~~--~~~~i~~~~iCag~~  362 (363)
                      ++.++++++++|+..+...  ....++++||||+.+
T Consensus       143 ~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~Ca~~~  178 (242)
T 3tvj_B          143 YVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE  178 (242)
T ss_dssp             EEEEEBCCHHHHHHHHHSTTSCTTCCCTTEEEESCT
T ss_pred             EEeeeEEcHHHHHHhhccCCcccccccCCeEEECCC
Confidence            9999999999998653221  122488999999853

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=99.78  E-value=3.2e-19  Score=159.21  Aligned_cols=107  Identities=34%  Similarity=0.563  Sum_probs=85.2

Q ss_pred             eEEEeeeEEEEcCCCCC-CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC------
Q psy15989        249 VVFTDVKRVHIYPTFNS-SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND------  321 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~-~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~------  321 (363)
                      .+...|.++++||+|+. .++.||||||||++|+.|+++|+|||||......  .....+..|+++|||.+...      
T Consensus       106 ~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~--~~~~~g~~~~v~GWG~~~~~~~~~~~  183 (289)
T 2bdy_A          106 EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAA--SLLQAGYKGRVTGWGNLKETWTANVG  183 (289)
T ss_dssp             CEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHH--HHCCTTCEEEEEESSCSSCC------
T ss_pred             ceeeeeEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccccc--cccCCCCEEEEECCCcCCCccccCcc
Confidence            45567999999999984 5678999999999999999999999998643210  00245788999999987532      


Q ss_pred             Cc-cccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        322 RV-SEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       322 ~~-~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .. +..||++.++++++++|+..+    ...++++|||||+
T Consensus       184 ~~~~~~L~~~~v~i~~~~~C~~~~----~~~i~~~~iCag~  220 (289)
T 2bdy_A          184 KGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGY  220 (289)
T ss_dssp             -CCCSBCEEEEEEBCCHHHHHHTC----SSCCCTTEEEECC
T ss_pred             ccccccceEEEEEEECHHHhhccc----cCcCCCCEEeccC
Confidence            12 778999999999999997653    3357899999985

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=99.78  E-value=2.7e-19  Score=155.40  Aligned_cols=103  Identities=24%  Similarity=0.394  Sum_probs=75.4

Q ss_pred             ceEEEeeeEEEEcCCCCCC-----------CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        248 YVVFTDVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~-----------~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      ..+...|.++++||+|+..           .+.||||||||++|+.|+++|+|||||....       ..+..|+++|||
T Consensus        65 ~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-------~~~~~~~v~GwG  137 (240)
T 1sgf_A           65 SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEP-------KLGSTCLASGWG  137 (240)
T ss_dssp             TCEEEEEEEEEECTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCC-------CTTCEEEEC---
T ss_pred             CceEEEEEEEEcCCCCcccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCCC-------CCCCEEEEEecC
Confidence            3466789999999999865           7789999999999999999999999997542       457899999999


Q ss_pred             CCCC--CCccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        317 YDEN--DRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       317 ~~~~--~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .+..  ...++.||++.++++++++|+..+    ...++++||||+.
T Consensus       138 ~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  180 (240)
T 1sgf_A          138 STTPIKFKYPDDLQCVNLKLLPNEDCDKAH----EMKVTDAMLCAGE  180 (240)
T ss_dssp             ----C---------CEEEEEECTHHHHTTC----SSBCCTTEEEEEE
T ss_pred             CCCCCCCCCCccccEEeeeEeCHHHhhhhh----CCCcCCCeEeEcc
Confidence            8853  346789999999999999997653    3357899999985

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.77  E-value=3.4e-19  Score=143.37  Aligned_cols=88  Identities=20%  Similarity=0.390  Sum_probs=74.1

Q ss_pred             CCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC----CccccceEEEeceeecc
Q psy15989        263 FNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND----RVSEELKMAIMPIVSHQ  338 (363)
Q Consensus       263 y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~----~~~~~L~~~~v~ii~~~  338 (363)
                      ++..++.||||||||++|++|+++|+|||||....       ..+..|+++|||.+..+    ..++.||++.+++++++
T Consensus         1 ~d~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~-------~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~   73 (152)
T 2pka_B            1 ADGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEP-------ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNT   73 (152)
T ss_dssp             CCCSBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-------CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHH
T ss_pred             CCCCCCCCCEEEEEECCCCcCCCCEEeEECCCCCC-------CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHH
Confidence            35567889999999999999999999999997543       34789999999988633    46889999999999999


Q ss_pred             cccccCccccccCCCCCeEEecc
Q psy15989        339 QCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       339 ~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +|+..+    ...++++||||+.
T Consensus        74 ~C~~~~----~~~~~~~~iCa~~   92 (152)
T 2pka_B           74 FCADAH----PDKVTESMLCAGY   92 (152)
T ss_dssp             HHHHHC----SSBCCTTEEEEEC
T ss_pred             Hhhhhh----cCCCCCCEEeecc
Confidence            998653    3457899999985

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=99.77  E-value=4e-19  Score=152.80  Aligned_cols=102  Identities=23%  Similarity=0.300  Sum_probs=87.4

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--CCccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--DRVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--~~~~~  325 (363)
                      ..+...|.++++||+|+...+.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+..  ...++
T Consensus        64 ~~~~~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~  136 (226)
T 1azz_A           64 TQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV-------GVGTVVTPTGWGLPSDSALGISD  136 (226)
T ss_dssp             TCEEEEECCEEECTTCBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCC-------CTTCEEEEEESSCSSTTCSSSCS
T ss_pred             ccEEEEEEEEEECCCCCCCCCCCceEEEEECCccccCCCcccccCCCCCC-------CCCCEEEEEeCCccCCCCCCCCc
Confidence            35667899999999999988999999999999999999999999997542       4578999999998853  24688


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .||++.++++++++|+..+    . .++++||||+.
T Consensus       137 ~L~~~~~~i~~~~~C~~~~----~-~~~~~~~Ca~~  167 (226)
T 1azz_A          137 VLRQVDVPIMSNADCDAVY----G-IVTDGNICIDS  167 (226)
T ss_dssp             BCEECCEEEECHHHHHHHH----S-CCCTTEEEECC
T ss_pred             hhEEeeEEEEChhHhhhhh----C-cCCCceEeecC
Confidence            9999999999999997653    3 47899999975

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=99.77  E-value=5.3e-19  Score=153.99  Aligned_cols=107  Identities=30%  Similarity=0.385  Sum_probs=86.3

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-Cc--ccc
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-RV--SEE  326 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-~~--~~~  326 (363)
                      +...|+++++||+|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+..+ ..  +..
T Consensus        70 ~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~~~  144 (245)
T 2f9n_A           70 QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASET-----FPPGMPCWVTGWGDVDNDEPLPPPFP  144 (245)
T ss_dssp             CCBCEEEEEECTTCCSSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCC-----CCTTCCEEEEESCCSBTTBCCCTTCB
T ss_pred             eEEEEEEEEECCCccCCCCCCcEEEEEeCCCCcCCCCccccCCCCcccC-----CCCCCEEEEEEeCCCCCCCCCCcccc
Confidence            4467999999999999889999999999999999999999999975432     346889999999988533 22  458


Q ss_pred             ceEEEeceeecccccccCccc-c-c---cCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQF-F-S---QFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~-~-~---~~i~~~~iCag~  361 (363)
                      ||++.++++++++|+..+... + .   ..++++||||+.
T Consensus       145 L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~~  184 (245)
T 2f9n_A          145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGN  184 (245)
T ss_dssp             CEEEECCEECHHHHHHHHHTTCCSCTTSCCSCTTEEEECC
T ss_pred             ceEEEEEEcCHHHhhhhhcccccccccccccccccEeecC
Confidence            999999999999998653210 0 0   247889999974

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=99.77  E-value=1.6e-18  Score=152.49  Aligned_cols=109  Identities=28%  Similarity=0.470  Sum_probs=89.1

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-C--cc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-R--VS  324 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-~--~~  324 (363)
                      ..+...|.++++||+|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+... .  .+
T Consensus        67 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  141 (261)
T 3gyl_B           67 DAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQAS-----FPNGLHCTVTGWGHVAPSVSLLTP  141 (261)
T ss_dssp             SCEEECEEEEEECTTCCSTTCSCCCEEEEESSCCCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESSCSBTTBCCCTT
T ss_pred             CceEEEEEEEEECCCcCCCCCCCcEEEEEECCCccCCCceeccCCCCcccC-----CCCCCEEEEEecCCCCCCCCccCC
Confidence            345678999999999999999999999999999999999999999975542     346889999999987533 2  37


Q ss_pred             ccceEEEeceeecccccccCccc----cccCCCCCeEEecc
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQF----FSQFTSDETFCAGF  361 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~----~~~~i~~~~iCag~  361 (363)
                      ..||++.++++++++|+..+...    ....++++||||+.
T Consensus       142 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~Ca~~  182 (261)
T 3gyl_B          142 KPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGY  182 (261)
T ss_dssp             CBCEEEEEEEECHHHHHHHHTTTCCTTCCCCCCTTEEEESC
T ss_pred             ccceEEEEEEECHHHhhhhhcccccccccccccCCeEeeCC
Confidence            88999999999999998653211    12357899999985

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=99.77  E-value=3.9e-19  Score=153.88  Aligned_cols=107  Identities=31%  Similarity=0.485  Sum_probs=87.5

Q ss_pred             ceEEEeeeEEEEcCCCCC--CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcc
Q psy15989        248 YVVFTDVKRVHIYPTFNS--SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVS  324 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~--~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~  324 (363)
                      ..+...|.++++||+|+.  ..+.||||||||++|+.|+++|+|||||.....   .....+..|+++|||.+. .+..+
T Consensus        64 ~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~---~~~~~~~~~~v~GwG~~~~~~~~~  140 (235)
T 2wph_S           64 TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYT---NIFLKFGSGYVSGWGRVFHKGRSA  140 (235)
T ss_dssp             CCEEEEEEEEEECTTTTSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHH---HHHHHTCEEEEEESSBSSTTSCBC
T ss_pred             CcEEeeeEEEEeCCCCcccCCcCCCCEEEEEECCcCcCCCCccccCCCCCccc---ccccCCccEEEEeCCCccCCCCcc
Confidence            346678999999999998  678899999999999999999999999864321   012347789999999885 44567


Q ss_pred             ccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ..||++.++++++++|++.+    ...++++||||+.
T Consensus       141 ~~l~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  173 (235)
T 2wph_S          141 LVLQYLRVPLVDRATCLRST----KFTITNNMFCAGF  173 (235)
T ss_dssp             SBCEEEEEEEECHHHHHHTC----SSCCCTTEEEESC
T ss_pred             chheEeeeeeeCHHHhcCcc----cCCCCCCEEEeCC
Confidence            89999999999999997653    3357899999985

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=99.77  E-value=6.9e-19  Score=152.90  Aligned_cols=108  Identities=30%  Similarity=0.476  Sum_probs=88.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||......  .....+..|+++|||.+. .+..+..
T Consensus        65 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~--~~~~~~~~~~v~GwG~~~~~~~~~~~  142 (241)
T 2jkh_A           65 GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE--STLMTQKTGIVSGFGRTHEKGEQSTR  142 (241)
T ss_dssp             CCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHH--HHTTTSSEEEEEESCBSSTTSCBCSB
T ss_pred             CcEEEEeEEEEeCCCCCCCCCCCcEEEEEECCcccCCCCEeeeEcCCCCccc--ccccCCCeEEEEecCCCCCCCCcCcc
Confidence            3466789999999999998999999999999999999999999998643110  012357889999999885 4456788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |+++.++++++++|+..+    ...++++||||+.
T Consensus       143 L~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~  173 (241)
T 2jkh_A          143 LKMLEVPYVDRNSCKLSS----SFIITQNMFCAGY  173 (241)
T ss_dssp             CEEEEEEEECHHHHHHHC----SSCCCTTEEEESC
T ss_pred             ccEeeeccccHHHhcccc----cCcCCCCeEEeeC
Confidence            999999999999997653    3357899999985

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=99.77  E-value=6.8e-19  Score=153.78  Aligned_cols=109  Identities=30%  Similarity=0.554  Sum_probs=86.4

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-Cc---
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-RV---  323 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-~~---  323 (363)
                      ..+...|.++++||+|+..++.||||||||++|+.|+++|+|||||...... ......+..|+++|||.+... ..   
T Consensus        65 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~-~~~~~~g~~~~v~GwG~~~~~~~~~~~  143 (250)
T 1aut_C           65 WELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAE-RELNQAGQETLVTGWGYHSSREKEAKR  143 (250)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHH-HTTTSTTCEEEEEECCCCCSCCSCCCS
T ss_pred             ccEEEEEEEEEECCCCCCCCCCCcEEEEEECCcccCCCceeeeEcCCCcccc-ccccCCCCEEEEEEeCCCCCCCccccc
Confidence            3466789999999999998999999999999999999999999998642100 000145789999999987532 22   


Q ss_pred             --cccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        324 --SEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       324 --~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                        +..||++.++++++++|+..+    ...++++|||||.
T Consensus       144 ~~~~~L~~~~~~i~~~~~C~~~~----~~~~~~~~~Cag~  179 (250)
T 1aut_C          144 NRTFVLNFIKIPVVPHNECSEVM----SNMVSENMLCAGI  179 (250)
T ss_dssp             SCSSBCEEEEEEEECHHHHHHHC----SSCCCTTEEEECC
T ss_pred             cccceeeEEEEEEecHHHhhHHh----ccCCCCCEEEeCC
Confidence              247999999999999997653    3457899999985

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=99.77  E-value=1.5e-18  Score=151.39  Aligned_cols=108  Identities=21%  Similarity=0.461  Sum_probs=89.0

Q ss_pred             ceEEEeeeEEEEcCCCCC-CCCCCceEEEeecce----eecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-
Q psy15989        248 YVVFTDVKRVHIYPTFNS-SNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-  321 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~-~~~~nDIall~L~~~----v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-  321 (363)
                      ..+...|.++++||+|+. ....||||||||++|    +.|+++|+|||||.....     ...+..|+++|||.+..+ 
T Consensus        66 ~~~~~~v~~i~~hp~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~  140 (248)
T 2r0l_A           66 VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGST-----FPAGHKCQIAGWGHLDENV  140 (248)
T ss_dssp             SCEEECEEEEEECTTCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESCCSSSSC
T ss_pred             ccEEEeeeEEEeCCccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCC-----CCCCCEEEEEEccccCCCC
Confidence            346678999999999998 778999999999999    899999999999975432     356889999999988532 


Q ss_pred             -CccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        322 -RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       322 -~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                       ..+..||++.++++++++|+...  .+...++++||||+..
T Consensus       141 ~~~~~~L~~~~~~~~~~~~C~~~~--~~~~~~~~~~~Ca~~~  180 (248)
T 2r0l_A          141 SGYSSSLREALVPLVADHKCSSPE--VYGADISPNMLCAGYF  180 (248)
T ss_dssp             CSCCSBCEEEEEEBCCHHHHTSTT--TTGGGCCTTEEEESCS
T ss_pred             CCCCchheEEEEeeeCHHHhCCcc--ccCCcCCCCEEeECCC
Confidence             35789999999999999997642  2344578999999853

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.76  E-value=1.9e-19  Score=144.89  Aligned_cols=127  Identities=21%  Similarity=0.273  Sum_probs=93.1

Q ss_pred             CCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC-eeEEeeeeEEEEeecCe
Q psy15989        113 NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS-AWYLRGIVSITVARDGL  191 (363)
Q Consensus       113 ~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~-~~~~~~l~~~~~~~~~~  191 (363)
                      +..++.||||||||++|++|+++|+|||||....       ..+ ..|. .+|||.+...+. ......|+...+++++.
T Consensus         2 d~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~-------~~~-~~~~-v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~   72 (152)
T 2pka_B            2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEP-------ELG-STCE-ASGWGSIEPGPDDFEFPDEIQCVQLTLLQN   72 (152)
T ss_dssp             CCSBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-------CTT-CEEE-EEESSCSSCCSSCCCCCSBCEEEEEEEECH
T ss_pred             CCCCCCCCEEEEEECCCCcCCCCEEeEECCCCCC-------CCC-CEEE-EEecccccCCCCcCCCCccceEEEeEEcCH
Confidence            4567789999999999999999999999997665       112 3455 688886543221 01245577888899999


Q ss_pred             eecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcceEEEeeeEE
Q psy15989        192 RVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHYVVFTDVKRV  257 (363)
Q Consensus       192 ~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~~v~~~V~~i  257 (363)
                      ..|...        +.|+..  ...+.|.|||||||++..    +|+||+|++     ...|. ...+.+|++|..+
T Consensus        73 ~~C~~~~~~~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~g----~l~Gi~S~g-----~~~C~~~~~p~vyt~V~~y  140 (152)
T 2pka_B           73 TFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNG----MWQGITSWG-----HTPCGSANKPSIYTKLIFY  140 (152)
T ss_dssp             HHHHHHCSSBCCTTEEEEECTTSSCBCCTTCTTCEEEETT----EEEEEECCC-----CSSTTCTTCCEEEEEGGGG
T ss_pred             HHhhhhhcCCCCCCEEeeccCCCCCcccCCccccceEECC----EEEEEEecC-----CCCCCCCCCCeEEEEHHHH
Confidence            999642        345543  356899999999999963    699999993     23465 4678999998753

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=99.76  E-value=1.5e-18  Score=154.34  Aligned_cols=108  Identities=21%  Similarity=0.461  Sum_probs=89.3

Q ss_pred             ceEEEeeeEEEEcCCCCC-CCCCCceEEEeecce----eecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-
Q psy15989        248 YVVFTDVKRVHIYPTFNS-SNYLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-  321 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~-~~~~nDIall~L~~~----v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-  321 (363)
                      ..+...|.++++||+|+. ....||||||||++|    +.|+++|+|||||.....     ...+..|+++|||.+..+ 
T Consensus       101 ~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~-----~~~g~~~~v~GwG~~~~~~  175 (283)
T 1yc0_A          101 VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGST-----FPAGHKCQIAGWGHLDENV  175 (283)
T ss_dssp             SCEEECEEEEEECTTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESSCSBTTB
T ss_pred             ceEEEeeEEEEecCccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCC-----CCCCCEEEEEEeCccCCCC
Confidence            356778999999999998 778999999999999    899999999999975432     356889999999988533 


Q ss_pred             -CccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        322 -RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       322 -~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                       ..+..||++.++++++++|+..+  .++..++++||||+..
T Consensus       176 ~~~~~~L~~~~v~i~~~~~C~~~~--~~~~~~~~~~iCa~~~  215 (283)
T 1yc0_A          176 SGYSSSLREALVPLVADHKCSSPE--VYGADISPNMLCAGYF  215 (283)
T ss_dssp             CSCCSBCEEEEEEBCCHHHHTSTT--TTGGGCCTTEEEESCS
T ss_pred             CccCchheEeEEEEECHHHhcCcc--ccCCcCCCCEEeeCCC
Confidence             35789999999999999997642  2344578999999853

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=99.76  E-value=6e-19  Score=154.52  Aligned_cols=113  Identities=27%  Similarity=0.322  Sum_probs=89.8

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+..+|.++++||+|+..+..||||||||++|+.|+++|+|||||.....  ......+..|+++|||.+. .+..+..
T Consensus        67 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~--~~~~~~~~~~~v~GwG~~~~~~~~~~~  144 (254)
T 2bz6_H           67 DEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFS--ERTLAFVRFSLVSGWGQLLDRGATALE  144 (254)
T ss_dssp             CCEEEEEEEEEEETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHH--HHTGGGCCEEEEEESCBSSTTSCBCSB
T ss_pred             CcEEEEEEEEEECCCCCCCCCcCcEEEEEECCccccCCCccceECCCCccc--cccccCCCcEEEEeCcccCCCCCCChh
Confidence            346678999999999999899999999999999999999999999864311  0012357889999999885 4556788


Q ss_pred             ceEEEeceeecccccccCcccc-ccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFF-SQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~-~~~i~~~~iCag~~  362 (363)
                      |+++.++++++++|+..+.... ...++++||||+..
T Consensus       145 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~  181 (254)
T 2bz6_H          145 LMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYS  181 (254)
T ss_dssp             CEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEESCS
T ss_pred             heeeeeeeecHHHHhhhhhccccCCccCCCEEeecCC
Confidence            9999999999999986543211 22578999999853

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.76  E-value=6e-19  Score=159.56  Aligned_cols=108  Identities=17%  Similarity=0.311  Sum_probs=89.5

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+..+|.++++||+|+..++.||||||||++|+.|+++|+|||||.....  ......+..++++|||. ..+..+..|
T Consensus       155 ~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~--~~~~~~~~~~~v~GwG~-~~~~~~~~L  231 (317)
T 3h5c_B          155 DPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFA--EHLLIPRTRGLLSGWAR-NGTDLGNSL  231 (317)
T ss_dssp             SCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHH--HHTTTTTSCEEEEBCCT-TCCSSSCCC
T ss_pred             CcEEEEeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceeCCCcccc--cccccCCCeEEEEecCC-CCCCCCccc
Confidence            456778999999999999999999999999999999999999999965310  00124588999999998 444568899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|++.    +...++++||||+..
T Consensus       232 ~~~~v~~~~~~~C~~~----~~~~~~~~~~Ca~~~  262 (317)
T 3h5c_B          232 TTRPVTLVEGEECGQV----LNVTVTTRTYCERSS  262 (317)
T ss_dssp             BCCEEEEECHHHHHHH----HTCCCCTTEEEEECS
T ss_pred             eEEEEEEECHHHHhhh----hcCcCCCceeECCCC
Confidence            9999999999999865    344688999999854

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=99.76  E-value=1.3e-18  Score=150.04  Aligned_cols=101  Identities=21%  Similarity=0.299  Sum_probs=86.6

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--CCcccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--DRVSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--~~~~~~  326 (363)
                      .+...|.++++||+|+...+.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+..  ...+..
T Consensus        63 ~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~~  135 (231)
T 2aiq_A           63 LRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP-------SVGSVCRIMGWGTITSPNATLPDV  135 (231)
T ss_dssp             EEECEEEEECCSSCCSSSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEESSCSSSSSCCCCSS
T ss_pred             eEEEEEEEEEECCCCCCCCCCCCEEEEEecCCCCCCCcEEeeECCCCCC-------CCCCEEEEEeCCccCCCCCccCch
Confidence            4566899999999999989999999999999999999999999997543       3578999999998753  345889


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ||++.++++++++|+..+    .. +.++||||+.
T Consensus       136 l~~~~~~~~~~~~C~~~~----~~-~~~~~~Ca~~  165 (231)
T 2aiq_A          136 PHCANINILDYAVCQAAY----KG-LAATTLCAGI  165 (231)
T ss_dssp             CEEEEEEEECHHHHHHHC----TT-CCSSEEEEEC
T ss_pred             hhhccceecchhhhhhhh----cC-CCcCcEEecc
Confidence            999999999999997653    22 7889999985

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=99.76  E-value=2.4e-18  Score=147.78  Aligned_cols=105  Identities=25%  Similarity=0.277  Sum_probs=88.1

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+..+..||||||||++|+.|+++++|||||.....     ...+..|+++|||.+. .+..+..
T Consensus        66 ~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  140 (224)
T 3rp2_A           66 TQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDF-----IHPGAMCWAAGWGKTGVRDPTSYT  140 (224)
T ss_dssp             TCEEEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCEEEEEESSEEETTEEECSB
T ss_pred             CcEEEEEEEEEECCCccCCCCCccEEEEEcCCCcccCCcccceecCCcccC-----CCCCCEEEEEeCCCCCCCCCCCce
Confidence            346678999999999999999999999999999999999999999976542     3568899999999875 3446788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |+++.++++++++|+..     .....+.||||+.+
T Consensus       141 l~~~~~~~~~~~~C~~~-----~~~~~~~~~Ca~~~  171 (224)
T 3rp2_A          141 LREVELRIMDEKACVDY-----RYYEYKFQVCVGSP  171 (224)
T ss_dssp             CEEEEEEEECGGGTTTT-----TCCCTTTEEEECCT
T ss_pred             eeEeeeeecChHHhccc-----cccCcCCEEEecCC
Confidence            99999999999999752     22357889999864

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=99.76  E-value=2e-18  Score=150.52  Aligned_cols=108  Identities=19%  Similarity=0.350  Sum_probs=88.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCC--CCCceEEEeecce----eecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC
Q psy15989        248 YVVFTDVKRVHIYPTFNSSN--YLGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND  321 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~--~~nDIall~L~~~----v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~  321 (363)
                      ..+...|.++++||+|+..+  ..||||||||++|    +.|++.|+|||||.....     ...+..|+++|||.+...
T Consensus        72 ~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~-----~~~~~~~~v~GwG~~~~~  146 (247)
T 3mhw_U           72 GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYND-----PQFGTSCEITGFGKENST  146 (247)
T ss_dssp             TCEEEEEEEEEECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESCCSSTT
T ss_pred             CCEEEEEEEEEECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCC-----CCCCCEEEEEecCCcCCC
Confidence            35667899999999998766  6799999999999    889999999999975432     245889999999988533


Q ss_pred             --CccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        322 --RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       322 --~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                        ..+..|+++.++++++++|+..+  .+...++++||||+.+
T Consensus       147 ~~~~~~~l~~~~~~~~~~~~C~~~~--~~~~~~~~~~~Ca~~~  187 (247)
T 3mhw_U          147 DYLYPEQLKMTVVKLISHRECQQPH--YYGSEVTTKMLCAADP  187 (247)
T ss_dssp             CSSCCSBCEEEEEEEECHHHHTSTT--TTGGGCCTTEEEEECT
T ss_pred             CcccchhheeeEEEEEChHHhcCcc--ccCCcCCCCeEecCCC
Confidence              35889999999999999998642  2445688999999864

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=99.75  E-value=2.5e-18  Score=147.70  Aligned_cols=103  Identities=24%  Similarity=0.443  Sum_probs=85.3

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Ccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~~  326 (363)
                      .+...|.++++||+|+..  .||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+..+  ..+..
T Consensus        64 ~~~~~v~~i~~hp~y~~~--~~DiALl~L~~~~~~~~~v~picL~~~~~~-----~~~g~~~~v~GwG~~~~~~~~~~~~  136 (224)
T 1pq7_A           64 GITSSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGSD-----PVAGSSATVAGWGATSEGGSSTPVN  136 (224)
T ss_dssp             SEEECEEEEEECTTCBTT--BTCCEEEEESSCCCCBTTBCCCCBCCTTCC-----CCTTCEEEEEESCCSSTTCSCCCSB
T ss_pred             CEEEEEEEEEECCCCCCC--CCCEEEEEeCCCCcCCCcccceecCCcccC-----CCCCCEEEEEecCCcCCCCCcccce
Confidence            466789999999999876  899999999999999999999999953322     256889999999988533  46788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ||++.++++++++|+..+.   ...++++||||+.
T Consensus       137 l~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~  168 (224)
T 1pq7_A          137 LLKVTVPIVSRATCRAQYG---TSAITNQMFCAGV  168 (224)
T ss_dssp             CEEEEEEEECHHHHHHHHC---TTTSCTTEEEECC
T ss_pred             eeEeEEEEEcHHHhhHhhc---CCCCCCCeEEeec
Confidence            9999999999999986532   1347889999985

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=99.75  E-value=4.2e-18  Score=147.25  Aligned_cols=102  Identities=25%  Similarity=0.304  Sum_probs=86.1

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccceE
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKM  329 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~  329 (363)
                      ....+..+++||+|+...+.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+..+..+..||+
T Consensus        67 ~~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~-------~~~~~~~v~GwG~~~~~~~~~~l~~  139 (234)
T 3s9c_A           67 IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSR-------GVGSRCRIMGWGKISTTTYPDVPHC  139 (234)
T ss_dssp             EECEEEEECCSSCSSTTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCC-------CTTCEEEEEESSCSBTTBCCSSCEE
T ss_pred             eEEeeeEEEeCCCCCCCCCcCceEEEEECCccccCCcccccccCCCCC-------CCCCeEEEEeeCCCCCCCCCccccc
Confidence            334556677799999999999999999999999999999999997653       3478999999999876667889999


Q ss_pred             EEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       330 ~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +.++++++++|+..+.   ...+.++||||+.
T Consensus       140 ~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~  168 (234)
T 3s9c_A          140 TNIFIVKHKWCEPLYP---WVPADSRTLCAGI  168 (234)
T ss_dssp             EEEEEECGGGTTTTCT---TSCTTSSEEEEEC
T ss_pred             cceEecCHHHhhhccc---CCCCCcceEEeec
Confidence            9999999999986542   1357889999985

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=99.74  E-value=5.6e-18  Score=146.82  Aligned_cols=104  Identities=20%  Similarity=0.318  Sum_probs=86.4

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--CCccccc
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--DRVSEEL  327 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--~~~~~~L  327 (363)
                      ....+..++.||+|+...+.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+..  +..+..|
T Consensus        67 ~~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~~l  139 (238)
T 4e7n_A           67 TRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPP-------SVGSVCRIMGWGRISPTEGTYPDVP  139 (238)
T ss_dssp             EECEEEEECSSTTCCCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEESSCSSSSSCCCCSSC
T ss_pred             eEeeeeeEEcCCCCCCCCCCCcEEEEEeCCCccCCCceeeeeCCCCCC-------CCCCEEEEEECCCCCCCCCCCCccc
Confidence            344566777799999999999999999999999999999999997653       3488999999998753  3568899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +++.++++++++|+..+.. +...++++||||+.
T Consensus       140 ~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~Ca~~  172 (238)
T 4e7n_A          140 HCVNINLLEYEMCRAPYPE-FELPATSRTLCAGI  172 (238)
T ss_dssp             EEEEEEEECGGGGTTTCGG-GCCCSCCSEEEEEC
T ss_pred             eEeeccccCHHHHhhhccc-ccCCCCCCeEEeCC
Confidence            9999999999999876432 22457899999984

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=99.74  E-value=1.6e-18  Score=161.85  Aligned_cols=105  Identities=30%  Similarity=0.513  Sum_probs=78.0

Q ss_pred             EeeeEEEEcCCCCCC---CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccce
Q psy15989        252 TDVKRVHIYPTFNSS---NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELK  328 (363)
Q Consensus       252 ~~V~~ii~h~~y~~~---~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~  328 (363)
                      ..|.++++||+|+..   ++.||||||||++|+.|+++|+|||||.....     ...+..++++|||.++. ..+..||
T Consensus       229 ~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~-~~~~~L~  302 (399)
T 1gpz_A          229 HPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-----YDLGLMGYVSGFGVMEE-KIAHDLR  302 (399)
T ss_dssp             CCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGG-----GCTTCEEEEEECC------CCSBCE
T ss_pred             cceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccc-----cCCCCEEEEEccCCCCC-ccCccce
Confidence            468999999999753   57899999999999999999999999975431     24578899999998864 3578899


Q ss_pred             EEEeceeecccccccCccc-cccCCCCCeEEeccC
Q psy15989        329 MAIMPIVSHQQCLWSNPQF-FSQFTSDETFCAGFR  362 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~~~~~-~~~~i~~~~iCag~~  362 (363)
                      ++.++++++++|++.+... ....++++|||||.+
T Consensus       303 ~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~  337 (399)
T 1gpz_A          303 FVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHP  337 (399)
T ss_dssp             EEEEEEECHHHHHC-----------CCSEEEEECG
T ss_pred             EEEEEEcCHHHhhhhhhcccccCcCCCCeEecccC
Confidence            9999999999998654321 112478999999863

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=99.74  E-value=6.9e-19  Score=172.49  Aligned_cols=104  Identities=30%  Similarity=0.554  Sum_probs=82.9

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccce
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEELK  328 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L~  328 (363)
                      +...|.++++||+|+..+..||||||||++|+.|+++|+|||||.....     ...+..++|+|||.+. .+..++.||
T Consensus       459 ~~~~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~-----~~~~~~~~v~GWG~~~~~~~~s~~L~  533 (625)
T 2f83_A          459 SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDR-----NVIYTDCWVTGWGYRKLRDKIQNTLQ  533 (625)
T ss_dssp             CCEEEEEEEECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGT-----TCCCCCEEECBCC------CCCSBCB
T ss_pred             eEEeEEEEEECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccCC-----ccCCCEEEEEEecCCCCCCcCCcccE
Confidence            3467999999999999889999999999999999999999999965432     2457889999999875 445688999


Q ss_pred             EEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        329 MAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ++.++++++++|+..+.   ...++++|||||+
T Consensus       534 ~~~v~i~~~~~C~~~~~---~~~i~~~~iCag~  563 (625)
T 2f83_A          534 KAKIPLVTNEECQKRYR---GHKITHKMICAGY  563 (625)
T ss_dssp             CCEECCCCHHHHHTTCT---TSCCCTTBCCC--
T ss_pred             EEEEEEcCHHHHHHHhc---cCCCCCCeEEeec
Confidence            99999999999986542   2357899999985

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=99.74  E-value=6.2e-18  Score=146.23  Aligned_cols=107  Identities=18%  Similarity=0.238  Sum_probs=89.0

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeeccc-ceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Ccccc
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM-YVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSEE  326 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~-~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~~  326 (363)
                      +...|.++++| +|++.+..||||||+|++|+.|++ .++|||||.....     ...+..|+++|||.+..+  ..+..
T Consensus        65 ~~~~v~~i~~h-~y~~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~~  138 (235)
T 3h7t_A           65 TSVMAKKIYIV-RYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYD-----PEPDTSVLVSGWGSTNFKSLEYSGD  138 (235)
T ss_dssp             EEEEEEEEEEC-SCBTTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCC-----CCTTCEEEEEECCCSSTTCCCCCSB
T ss_pred             ceeeeeeEEee-ecCCCCCCCCeEEEEeccccccCCccccceecCccccC-----CCCCCeEEEEecCCCCCCCCchhHH
Confidence            66789999999 999999999999999999999999 9999999976532     256889999999998533  56889


Q ss_pred             ceEEEeceeecccccccCccc-cccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQF-FSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~-~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+... ....++++||||+.+
T Consensus       139 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~  175 (235)
T 3h7t_A          139 LMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGE  175 (235)
T ss_dssp             CEEEEEEEECHHHHHHHHHTTTCGGGCSTTEEEECBT
T ss_pred             HhhCCCceeCHHHHHHHhhhcccCccccCCeEecCCC
Confidence            999999999999998654321 112488999999864

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=99.73  E-value=3.1e-18  Score=150.34  Aligned_cols=107  Identities=34%  Similarity=0.567  Sum_probs=85.2

Q ss_pred             eEEEeeeEEEEcCCCC-CCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC------
Q psy15989        249 VVFTDVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND------  321 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~-~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~------  321 (363)
                      .+...|.++++||+|+ ...+.||||||||++|+.|+++|+|||||......  .....+..|+++|||.+...      
T Consensus        76 ~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~--~~~~~g~~~~v~GwG~~~~~~~~~~~  153 (259)
T 3rm2_H           76 EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAA--SLLQAGYKGRVTGWGNLKETWTANVG  153 (259)
T ss_dssp             CEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHH--HHCCTTCEEEEEESCCSSCC------
T ss_pred             ceeeEEEEEEECCCCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCccccc--cccCCCCEEEEeecCCCcCcCCcccc
Confidence            3455699999999998 56788999999999999999999999998643210  01245789999999987532      


Q ss_pred             -CccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        322 -RVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       322 -~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                       ..+..||++.++++++++|+..+    ...++++|||||+
T Consensus       154 ~~~~~~l~~~~~~~~~~~~C~~~~----~~~~~~~~~Cag~  190 (259)
T 3rm2_H          154 KGQPSVLQVVNLPIVERPVCKDST----RIRITDNMFCAGY  190 (259)
T ss_dssp             -CCCSBCEEEEEEBCCHHHHHHTC----SSCCCTTEEEECC
T ss_pred             ccccccceEEEEEEeCHHHhhhhh----cccCCCceEeeec
Confidence             12788999999999999997653    3457899999975

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=99.73  E-value=8.4e-18  Score=144.74  Aligned_cols=105  Identities=26%  Similarity=0.292  Sum_probs=88.2

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeeccc-ceEeeeeCCCCCCccccccccCCcEEEEEecCCCC-CCcccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM-YVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN-DRVSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~-~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~-~~~~~~  326 (363)
                      .+...|.+++.| +|+..++.||||||||++|+.|++ .++|||||.....     ...+..|+++|||.+.. +..+..
T Consensus        68 ~~~~~v~~i~~h-~y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~  141 (228)
T 3h7o_A           68 KSDPYVSHVYLS-FYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFR-----PKTGSDVLVSGYGDGQTMDPKDHD  141 (228)
T ss_dssp             EEECCEEEEEES-SCBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCC-----CCTTCEEEEEECCCSSCSCGGGGB
T ss_pred             ceeeeEEEEEcc-ccCCCCccCCEEEEEECCcccccccccccccCCccccC-----CCCCCeeEEEEEecCCCCCCcccc
Confidence            466788999999 999999999999999999999999 9999999976532     25688999999998864 456788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+.   ...++++||||+..
T Consensus       142 L~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~~  174 (228)
T 3h7o_A          142 LKSAQLTVVDLDECRTKYG---PIFLSLQVFCAQKV  174 (228)
T ss_dssp             CEEEEEEEECHHHHHHHHT---TSCCCSSEEEEECT
T ss_pred             cccceeEEEcHHHHHHHhc---CccCCceEEecCCC
Confidence            9999999999999986532   22478899999864

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=99.72  E-value=1.2e-17  Score=144.35  Aligned_cols=100  Identities=19%  Similarity=0.321  Sum_probs=83.6

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+...|.+++.||.      .||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+.....++.|
T Consensus        68 ~~~~~~v~~i~~hp~------~~DiALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~L  136 (234)
T 2asu_B           68 SLQRVPVAKMVCGPS------GSQLVLLKLERSVTLNQRVALICLPPEWYV-----VPPGTKCEIAGWGETKGTGNDTVL  136 (234)
T ss_dssp             TCEEEEEEEEEECST------TCCEEEEEESSCCCCSSSSCCCBCCCTTCC-----CCTTCEEEEEESSCCTTSSCTTBC
T ss_pred             ceEEEEEEEEecCCC------CCCeEEEEeCCcCcCCCcEeccCCCCcccc-----CCCCCEEEEEeCCccCCCCCCccc
Confidence            456678999999996      589999999999999999999999975432     356889999999998755567899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+    ...+.++||||+..
T Consensus       137 ~~~~~~~~~~~~C~~~~----~~~~~~~~~Ca~~~  167 (234)
T 2asu_B          137 NVALLNVISNQECNIKH----RGRVRESEMCTEGL  167 (234)
T ss_dssp             EEEEEEEECHHHHHHHT----TTCCCTTEEEECCC
T ss_pred             eEEEeeEEcHHHccccc----CCccCcceEeecCC
Confidence            99999999999997653    34578999999853

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=99.72  E-value=1.2e-17  Score=144.42  Aligned_cols=102  Identities=22%  Similarity=0.270  Sum_probs=84.5

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Cccccc
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSEEL  327 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~~L  327 (363)
                      ....+..++.||+|+...+.||||||||++|+.|+++|+|||||....       ..+..|+++|||.+...  ..+..|
T Consensus        65 ~~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~~l  137 (234)
T 3s69_A           65 TRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPP-------SVGSVCHIMGWGSITPIKVTYPDVP  137 (234)
T ss_dssp             EECEEEEEECTTCCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEESSCSSSSSCCCCSSC
T ss_pred             eeeceEEEECCCccCCCCCcccEEEEeeCCcCCCCCcceeeecCCCCC-------CCCCEEEEEECCCCCCCCcCccccc
Confidence            334456677799999999999999999999999999999999997653       34889999999987532  567899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +++.++++++++|+..+.   ...+.++||||+.
T Consensus       138 ~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~  168 (234)
T 3s69_A          138 YCAYINLLDDAVCQAGYP---ELLTEYRTLCAGI  168 (234)
T ss_dssp             EEEEEEEECHHHHHHHCT---TCCTTSCEEEEEC
T ss_pred             ceeEEeecCHHHHhhhcc---cccCCcceEeccC
Confidence            999999999999987542   2347789999985

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.72  E-value=1.1e-17  Score=139.12  Aligned_cols=161  Identities=17%  Similarity=0.183  Sum_probs=96.0

Q ss_pred             eEEEE-EEEee---CCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCe
Q psy15989         46 SYVCG-GSLVS---VNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDI  121 (363)
Q Consensus        46 ~~~Cg-GsLIs---~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDI  121 (363)
                      ...|+ |.++.   ++||||||||+...        ..+.|..+.         .  +.  +.. +.+.+|    ..|||
T Consensus        11 ~~~ct~Gf~v~~~~~~~ilTaaHcv~~~--------~~~~v~~~~---------~--~~--~g~-~~~~~~----~~~Di   64 (185)
T 2qa9_E           11 TGRCSLGFNVRSGSTYYFLTAGHCTDGA--------TTWWANSAR---------T--TV--LGT-TSGSSF----PNNDY   64 (185)
T ss_dssp             SCEEECCEEEEETTEEEEEECHHHHTTC--------SEEESSTTS---------C--SE--EEE-EEEEEC----SBSCE
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCC--------CcEEecCCC---------c--eE--eEE-Eecccc----CCCCE
Confidence            35698 99987   46999999998642        233332110         0  11  111 123233    35899


Q ss_pred             EEEEeCC-cccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccceE
Q psy15989        122 ALLQLSS-DVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  200 (363)
Q Consensus       122 ALl~L~~-~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  200 (363)
                      |||||++ ++.+++.++|++|+.....      ..+...+  .+||+....      ...|+...+++ ....|. .+..
T Consensus        65 All~l~~~~~~~~~~v~~~~l~~~~~~------~~g~~v~--~~Gw~~~~~------~g~l~~~~~~v-~~~~~~-~~~~  128 (185)
T 2qa9_E           65 GIVRYTNTTIPKDGTVGGQDITSAANA------TVGMAVT--RRGSTTGTH------SGSVTALNATV-NYGGGD-VVYG  128 (185)
T ss_dssp             EEEEECCSSSCCCCEETTEECCEECCC------CTTCEEE--EEETTTEEE------EEEEEEEEEEE-ECSTTC-EEEE
T ss_pred             EEEEecCCCccccCccceeeeCCcccC------CCCCEEE--EecCCCcee------EeEEEEEEEEE-EcCCCC-EEec
Confidence            9999999 9999999999999753321      2233333  478865321      12233333332 112231 1111


Q ss_pred             EecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        201 VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       201 ~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      ......-.|.|||||||++.  +  .++||+|++     ..+|....+.+|++|..+
T Consensus       129 ~~~~~~cac~GDSGGPlv~~--~--~~vGI~s~g-----~~~~~~~~p~vyt~v~~~  176 (185)
T 2qa9_E          129 MIRTNVCAEPGDSGGPLYSG--T--RAIGLTSGG-----SGNCSSGGTTFFQPVTEA  176 (185)
T ss_dssp             EEEESCCCCTTCTTCEEEET--T--EEEEEEEEE-----EEETTTEEEEEEEEHHHH
T ss_pred             eEEecccCCCCCccceEEEC--C--EEEEEEEec-----CCCCCCCCcEEEEEHHHH
Confidence            22223335899999999974  2  899999994     345666678899987653

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=99.72  E-value=1.3e-17  Score=143.73  Aligned_cols=103  Identities=23%  Similarity=0.452  Sum_probs=84.6

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccceE
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKM  329 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~  329 (363)
                      +..+|.++++||+|+..++.||||||||+ |+.|+++|+|||||.....   .....+..|+++|||.+....  ..||+
T Consensus        67 ~~~~v~~i~~hp~y~~~~~~~DiALl~L~-~~~~~~~v~picLp~~~~~---~~~~~~~~~~v~GwG~~~~~~--~~l~~  140 (230)
T 2hlc_A           67 AVVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEEL---NNKFENIWATVSGWGQSNTDT--VILQY  140 (230)
T ss_dssp             EEEECSEEEECTTCBTTTTBTCCEEEECS-CCCCCSSCCCCBCCCGGGG---GCCCTTCEEEEEESSCCSSCC--CBCEE
T ss_pred             eEEEEEEEEECCCCCCCCccccEEEEEec-CCCcCCcEeeeEcCCcccc---ccccCCcEEEEEeeeecCCCC--ceeEE
Confidence            66789999999999998999999999999 9999999999999975421   012457889999999875432  67999


Q ss_pred             EEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        330 AIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       330 ~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +.++++++++|+..+.   ...+.++||||+.
T Consensus       141 ~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~  169 (230)
T 2hlc_A          141 TYNLVIDNDRCAQEYP---PGIIVESTICGDT  169 (230)
T ss_dssp             EEEEEECHHHHHTTSC---TTSSCTTEEEECC
T ss_pred             EEEEEeCHHHhhhhhC---CCcccCCeEEecC
Confidence            9999999999986532   2257889999975

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=99.72  E-value=2.3e-18  Score=161.58  Aligned_cols=107  Identities=34%  Similarity=0.560  Sum_probs=85.2

Q ss_pred             eEEEeeeEEEEcCCCC-CCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC-------
Q psy15989        249 VVFTDVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN-------  320 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~-~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~-------  320 (363)
                      .+...|.++++||+|+ ..++.||||||||++|+.|+++|+|||||......  .....+..|+|+|||.+..       
T Consensus       241 ~~~~~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~--~~~~~g~~~~v~GWG~t~~~~~~~~~  318 (424)
T 3nxp_A          241 EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAA--SLLQAGYKGRVTGWGNLKETWTANVG  318 (424)
T ss_dssp             CEEECEEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHH--HHHHHCSEEEEEESSHHHHHHHHC--
T ss_pred             eeEEEEEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCccccc--ccccCCCeEEEEecCCCCccCccccC
Confidence            4556799999999998 46789999999999999999999999998643210  0124688999999997531       


Q ss_pred             CCccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        321 DRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       321 ~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ...+..||++.++++++++|+..    +...++++|||||+
T Consensus       319 ~~~~~~L~~~~v~ii~~~~C~~~----~~~~i~~~~iCAg~  355 (424)
T 3nxp_A          319 KGQPSVLQVVNLPIVERPVCKDS----TRIRITDNMFCAGY  355 (424)
T ss_dssp             --CCSBCEEEEEEBCCHHHHHHT----CSSCCCTTEEEESC
T ss_pred             CCCCccceEEEeeEEcHHHhhhh----ccCcCCCCeEeccc
Confidence            22378899999999999999865    33458999999985

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=99.71  E-value=4e-17  Score=142.26  Aligned_cols=101  Identities=29%  Similarity=0.439  Sum_probs=82.4

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+...|.+++.||.      .||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+.....+..|
T Consensus        85 ~~~~~~v~~~~~hp~------~~DIALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~L  153 (247)
T 1ddj_A           85 HVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYV-----VADRTECFITGWGETQGTFGAGLL  153 (247)
T ss_dssp             TCEEEEEEEEEECTT------SCSCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEECCCCSSSTTTTBC
T ss_pred             ceEEEEeeeEEcCCC------CCcEEEEEeCCceeeCCCEEeeecCCcccC-----CCCCCEEEEEEcccCCCCCCCccc
Confidence            345678899999985      589999999999999999999999975432     245788999999998655457889


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |++.++++++++|++..  .+...++++||||+.
T Consensus       154 ~~~~~~i~~~~~C~~~~--~~~~~~~~~~~Ca~~  185 (247)
T 1ddj_A          154 KEAQLPVIENKVCNRYE--FLNGRVQSTELCAGH  185 (247)
T ss_dssp             EEEEEEEECHHHHTSTT--TTTTCCCTTEEEESC
T ss_pred             eEEeeeecCHHHhcchh--ccCCCCcCCeEeecC
Confidence            99999999999997531  123457899999985

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=99.70  E-value=4.5e-17  Score=139.89  Aligned_cols=95  Identities=20%  Similarity=0.338  Sum_probs=81.8

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccce
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEELK  328 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L~  328 (363)
                      +...|.+++.| +|+.....||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+..|+
T Consensus        69 ~~~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~l~  142 (225)
T 1a7s_A           69 QTFSISSMSEN-GYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNAT-----VEAGTRCQVAGWGSQRSGGRLSRFPR  142 (225)
T ss_dssp             EEEEEEEEECS-SCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCEEEEEESCCSSTTCCCCSSCE
T ss_pred             eEEeEEEEecc-cccCCCCcCCEEEEEcCCcccCCCceeEEEcCCCcCC-----CCCCCEEEEEeCCcCCCCCCcccccc
Confidence            66789999999 9999889999999999999999999999999976532     2468899999999885 455688999


Q ss_pred             EEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        329 MAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ++.++++++++|+.            +||||+..
T Consensus       143 ~~~~~~~~~~~C~~------------~~~Ca~~~  164 (225)
T 1a7s_A          143 FVNVTVTPEDQCRP------------NNVCTGVL  164 (225)
T ss_dssp             EEEEEECCGGGSCT------------TEEEEECS
T ss_pred             eeeeEECCHHHhcc------------CceEEecc
Confidence            99999999999952            68898753

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=99.70  E-value=6.7e-17  Score=140.21  Aligned_cols=102  Identities=20%  Similarity=0.308  Sum_probs=81.3

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+...|.+++.||+      .||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+.....+..|
T Consensus        67 ~~~~~~v~~~~~~p~------~~DiALl~L~~~v~~~~~v~picLp~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~L  135 (240)
T 1si5_H           67 CKQVLNVSQLVYGPE------GSDLVLMKLARPAVLDDFVSTIDLPNYGST-----IPEKTSCSVYGWGYTGLINYDGLL  135 (240)
T ss_dssp             TCEEEEEEEEEECSS------TTCEEEEEESSCCCCSSSCCCCBCCCTTCC-----CCTTCEEEEEESSCCCCSSCCCBC
T ss_pred             cceEEEEEEEEcCCC------CCcEEEEEECCccccCCceeccCcCCcCCC-----CCCCCEEEEEEeCCCCCCCCCCee
Confidence            356678999999986      789999999999999999999999975432     356889999999998655567899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++.++++++++|+..+..  ...+.++||||+..
T Consensus       136 ~~~~~~~~~~~~C~~~~~~--~~~~~~~~~Ca~~~  168 (240)
T 1si5_H          136 RVAHLYIMGNEKCSQHHRG--KVTLNESEICAGAE  168 (240)
T ss_dssp             EEEEEEEECGGGTCC---------CCTTEEEEECS
T ss_pred             EEEEEeecCHHHhhhhhcC--CccCCCCEEeecCC
Confidence            9999999999999865321  11278899999864

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=99.69  E-value=8.8e-17  Score=137.37  Aligned_cols=94  Identities=21%  Similarity=0.320  Sum_probs=80.1

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+...|.+++.| +|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+..|
T Consensus        67 ~~~~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~l  140 (218)
T 2z7f_E           67 RQVFAVQRIFEN-GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR-----LGNGVQCLAMGWGLLGRNRGIASVL  140 (218)
T ss_dssp             CEEEEEEEEEES-CCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCC-----CCTTCEEEEEESSBCSSSCCBCSBC
T ss_pred             eEEEEEEEEEcc-CCCCCCCCCCEEEEEECCcCcCCCceeccCcCCCCCC-----CCCCCEEEEEEeCCCCCCCCccchh
Confidence            467789999999 9999889999999999999999999999999976532     2468899999999885 34568899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |++.++++ +++|+.            .||||+.
T Consensus       141 ~~~~~~~~-~~~C~~------------~~~Ca~~  161 (218)
T 2z7f_E          141 QELNVTVV-TSLCRR------------SNVCTLV  161 (218)
T ss_dssp             EEEEEEEE-CTTCCT------------TSEEEEC
T ss_pred             eEeeeEEe-hhHcCc------------ceeeecc
Confidence            99999999 999963            1788864

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.66  E-value=8.9e-17  Score=155.76  Aligned_cols=103  Identities=22%  Similarity=0.330  Sum_probs=72.4

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeeccc----ceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCcc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM----YVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVS  324 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~----~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~  324 (363)
                      .+...|.++++||+|+..++.||||||||++|+.|++    .++|||||.....     ...+..++|+|||.+..+..+
T Consensus       389 ~~~~~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~-----~~~g~~~~v~GWG~t~~~~~~  463 (565)
T 2xrc_A          389 IVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYL-----FQPNDTCIVSGWGREKDNERV  463 (565)
T ss_dssp             -CEEEEEEEEECTTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTS-----SCTTCEEEEEC----------
T ss_pred             cEEEEEEEEEeCCCCCCCcccccceeeeeccccccccccccceeeeecCCcccc-----cCCCCEEEEEeCccCCCCCcc
Confidence            3556799999999999999999999999999999875    6899999965432     346889999999998765567


Q ss_pred             ccceEEEeceeecccccccCccccccCCC-CCeEEeccC
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQFFSQFTS-DETFCAGFR  362 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~~~~~i~-~~~iCag~~  362 (363)
                      ..||++.++++++  |+..+    ...+. ..|||||..
T Consensus       464 ~~L~~~~v~i~~~--C~~~~----~~~~~~~~~iCAg~~  496 (565)
T 2xrc_A          464 FSLQWGEVKLISN--CSKFY----GNRFYEKEMECAGTY  496 (565)
T ss_dssp             ---CEEEEEECSC--THHHH----TTSCCTTTEEEEEEC
T ss_pred             ceeeEEeeeehHH--hHHhh----ccCcCCCceEEeCCC
Confidence            8999999999984  97643    33344 459999864

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=99.65  E-value=5.1e-16  Score=132.91  Aligned_cols=96  Identities=25%  Similarity=0.333  Sum_probs=80.7

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.+++.| +|+..+..||||||||++|+.|+++|+|||||.....     ...+..|+++|||.+. .+..+..
T Consensus        69 ~~~~~~v~~i~~h-~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~-----~~~~~~~~~~GwG~~~~~~~~~~~  142 (221)
T 1fuj_A           69 TQQHFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQP-----VPHGTQCLAMGWGRVGAHDPPAQV  142 (221)
T ss_dssp             TCEEEEEEEEEEC-CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESSBSCSSSCBCSB
T ss_pred             ceEEEEEEEEEeC-CCCCCCCcccEEEEEeCCccccCCcceeeECCCCcCC-----CCCCCEEEEEEeCCCCCCCCHHHH
Confidence            3567789999999 9999889999999999999999999999999976532     2568899999999885 4456788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++ +++|+.            .||||+.+
T Consensus       143 l~~~~~~~~-~~~C~~------------~~~Ca~~~  165 (221)
T 1fuj_A          143 LQELNVTVV-TFFCRP------------HNICTFVP  165 (221)
T ss_dssp             CEEEEEEEE-CTTCCT------------TEEEEECS
T ss_pred             hhcccceEE-eeecCC------------ceeeeccC
Confidence            999999999 889953            27888653

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=99.65  E-value=3.8e-16  Score=134.02  Aligned_cols=99  Identities=25%  Similarity=0.389  Sum_probs=80.6

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+..+|.++++||+|+..++.||||||||++|+.+    .|+||+....       ..+..|+++|||.+. .+..+..|
T Consensus        62 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~----~~i~l~~~~~-------~~~~~~~v~GwG~~~~~~~~~~~l  130 (224)
T 3beu_A           62 AVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ----PTLKIATTTA-------YNQGTFTVAGWGANREGGSQQRYL  130 (224)
T ss_dssp             CEEEEEEEEEECTTCCCGGGSCCCEEEEESSCCCS----CCCEECCSST-------TSSSEEEEEESSCSSTTCCCCSBC
T ss_pred             ceEEEEEEEEeCCCcCCCcCCCCEEEEEeCCCCCC----Cccccccccc-------cCCCEEEEEecCccCCCCccccee
Confidence            35678999999999999889999999999999974    6889986432       235589999999885 44567899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +++.++++++++|+..+.   ...+.++||||+.
T Consensus       131 ~~~~~~~~~~~~C~~~~~---~~~~~~~~~Ca~~  161 (224)
T 3beu_A          131 LKANVPFVSDAACRSSSS---FILVANEMICAGY  161 (224)
T ss_dssp             EEEEEEEECHHHHHHHCS---SCCCGGGEEEECC
T ss_pred             eEeeCcccCHHHhhhhcC---CccCCCCeEEecc
Confidence            999999999999986532   1247789999985

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=99.63  E-value=4.8e-16  Score=154.80  Aligned_cols=102  Identities=28%  Similarity=0.428  Sum_probs=82.6

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+.+.|.++++||.      .||||||||++|+.|+++|+|||||.....     ...+..|+|+|||.+..+..+..|
T Consensus       629 ~~q~~~V~~i~~hp~------~nDIALLkL~~pv~~s~~V~PIcLP~~~~~-----~~~g~~~~vsGWG~t~~~~~s~~L  697 (791)
T 4dur_A          629 HVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYV-----VADRTECFITGWGETQGTFGAGLL  697 (791)
T ss_dssp             TCEEEEEEEEEECTT------CCSCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEECCCC---CCTTBC
T ss_pred             ccEEEEEEEEECCCC------CCceEEEEecCccccCCceeeeeccCcccc-----cCCCCEEEEEEeCCCCCCCCCCee
Confidence            346678999999997      479999999999999999999999976532     356789999999998755567899


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      +++.++++++++|+...  .+...++++|||||..
T Consensus       698 ~~~~v~ii~~~~C~~~~--~~~~~i~~~~iCAg~~  730 (791)
T 4dur_A          698 KEAQLPVIENKVCNRYE--FLNGRVQSTELCAGHL  730 (791)
T ss_dssp             EEEEEEEECHHHHTSTT--TTTTCCCTTEEEESCS
T ss_pred             EEEEEEEeCHHHhhccc--ccCCCCCCCeEEeccC
Confidence            99999999999997542  2344689999999853

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.62  E-value=8.5e-16  Score=120.16  Aligned_cols=67  Identities=28%  Similarity=0.436  Sum_probs=58.5

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE  319 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~  319 (363)
                      ..+..+|.++++||+|+..++.||||||||++|+.|+++|+|||||.....     ...+..|+++|||.++
T Consensus        64 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~-----~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C           64 KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDD-----FAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESCCSC
T ss_pred             ceEEEEEEEEEeCCCCCCCCCCCCEEEEEECCcccCCCcCcceECCCcccC-----CCCCCEEEEEcCCccC
Confidence            356678999999999999999999999999999999999999999975532     2468899999999864

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.61  E-value=1.4e-15  Score=125.86  Aligned_cols=152  Identities=20%  Similarity=0.204  Sum_probs=90.5

Q ss_pred             EEEE-EEEee---CCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeE
Q psy15989         47 YVCG-GSLVS---VNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIA  122 (363)
Q Consensus        47 ~~Cg-GsLIs---~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIA  122 (363)
                      ..|+ |.||+   ++||||||||+...          ..+.+|.+..                    +.|    ..||||
T Consensus        12 ~~ct~G~~v~~~~~~~vlTaaHc~~~~----------~~~~~G~~~~--------------------~~~----~~~DiA   57 (181)
T 2sga_A           12 SRCSLGFNVSVNGVAHALTAGHCTNIS----------ASWSIGTRTG--------------------TSF----PNNDYG   57 (181)
T ss_dssp             EEEECCEEEEETTEEEEEECHHHHTTC----------SEETTEEEEE--------------------EEC----SBSCEE
T ss_pred             CcEeccEEEEECCceEEEECcccCCCC----------CceeecceeC--------------------CcC----CCCCEE
Confidence            4699 99998   68999999998531          1234444320                    111    247999


Q ss_pred             EEEeCCcccCCCCccce----EecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccc
Q psy15989        123 LLQLSSDVDYSMYVRPV----CLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH  198 (363)
Q Consensus       123 Ll~L~~~~~~~~~v~pi----cL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  198 (363)
                      ||||++++.+++.|+++    +++.... .    ...+...|.  +||+.....+      .++.....+ +...+. .+
T Consensus        58 likl~~~~~~~~~v~~i~~~~~~~~~~~-~----~~~G~~v~~--~G~~~~~t~G------~v~~~~~~v-~~~~~~-~~  122 (181)
T 2sga_A           58 IIRHSNPAAADGRVYLYNGSYQDITTAG-N----AFVGQAVQR--SGSTTGLRSG------SVTGLNATV-NYGSSG-IV  122 (181)
T ss_dssp             EEEESCGGGCCCEEECSSSCEEECCEEC-C----CCTTCEEEE--EETTTEEEEE------EEEEEEEEE-ECGGGC-EE
T ss_pred             EEEccCCCcccceEEecCCcceeecccc-c----CCCCCEEEE--eecCCCccEE------EEEEeEEEE-ECCCCC-EE
Confidence            99999999998899998    7764221 0    022443443  5665432211      122232222 111121 01


Q ss_pred             eEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        199 YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       199 ~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      ........-.|.|||||||++..    .++||+|++     ...|....+.+|++|..
T Consensus       123 ~~~i~~~~c~~~GDSGGPlv~~~----~~vGI~s~g-----~~~~~~~~~~v~~~v~~  171 (181)
T 2sga_A          123 YGMIQTNVCAQPGDSGGSLFAGS----TALGLTSGG-----SGNCRTGGTTFYQPVTE  171 (181)
T ss_dssp             EEEEEESCCCCTTCTTCEEEETT----EEEEEEEEE-----EEETTTEEEEEEEEHHH
T ss_pred             eeeEecccccCCCCCCCEEEECC----EEEEEEEee-----CCCCcCCCceEEEEHHH
Confidence            11122223456899999999643    899999994     33566556788888754

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.60  E-value=1.5e-14  Score=124.97  Aligned_cols=158  Identities=20%  Similarity=0.192  Sum_probs=92.3

Q ss_pred             CCcceEEEEEeeC-CceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEE
Q psy15989         30 QWPWHVALYRTEG-INLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHI  108 (363)
Q Consensus        30 ~~Pw~v~l~~~~~-~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~  108 (363)
                      .-|.+|.|..... ......|+|+||+++||||||||+..        ...+.|+++..            .+.++.+..
T Consensus        40 ~~~svV~I~~~~~~~~~~~~GsG~iI~~~~VlTaaH~v~~--------~~~~~V~~~~~------------~~~~~~v~~   99 (237)
T 3k6y_A           40 TEPSVVKIRSLAPRCQKVLEGTGFVISPDRVMTNAHVVAG--------SNNVTVYAGDK------------PFEATVVSY   99 (237)
T ss_dssp             HGGGEEEEEEEEGGGTEEEEEEEEEEETTEEEECGGGTTT--------CSEEEEEETTE------------EEECEEEEE
T ss_pred             hcCCEEEEEEEecCCCcceeEEEEEEECCEEEECHHHcCC--------CceEEEEECCc------------EEEEEEEEE
Confidence            3588999976532 22356899999999999999999963        35678887751            233444556


Q ss_pred             CCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEee
Q psy15989        109 YPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVAR  188 (363)
Q Consensus       109 hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~  188 (363)
                      |+.       +|||||||+     +..++|++|+....       ..+. .+. ..|||.....   ....+..+.....
T Consensus       100 ~~~-------~DiAll~l~-----~~~~~~~~l~~~~~-------~~G~-~v~-v~G~p~g~~~---~~~~g~v~~~~~~  155 (237)
T 3k6y_A          100 DPS-------VDVAILAVP-----HLPPPPLVFAAEPA-------KTGA-DVV-VLGYPGGGNF---TATPARIREAIRL  155 (237)
T ss_dssp             ETT-------TTEEEEECT-----TCCSCCCCBCSSCC-------CTTC-EEE-EEECGGGCSC---EEEEEEEEEEEEE
T ss_pred             cCC-------CCEEEEEeC-----CCCCCceecCCCCC-------CCCC-EEE-EEECCCCCCC---ccceeEEEeeEee
Confidence            653       699999998     34688999973332       1122 233 4566532110   0111111111111


Q ss_pred             cCeeecccc---ceEEecCCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        189 DGLRVCDTK---HYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       189 ~~~~~C~~~---~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .........   ....+......|.|||||||+.. ++  .|+||+++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~GdSGGPLv~~-~G--~vvGI~s~~  201 (237)
T 3k6y_A          156 SGPDIYGDPEPVTRDVYTIRADVEQGDSGGPLIDL-NG--QVLGVVFGA  201 (237)
T ss_dssp             EECCTTCCSSCEEEEEEEEESCCCTTCTTCEEECT-TS--CEEEEEEEE
T ss_pred             cccccccCCCcccccEEEecCccCCCccHHHEECC-CC--EEEEEEEee
Confidence            101111110   11122334578999999999953 23  699999885

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=99.57  E-value=6.9e-15  Score=130.23  Aligned_cols=108  Identities=20%  Similarity=0.349  Sum_probs=84.8

Q ss_pred             ceEEEeeeEEEEcCCCCCCC--CCCceEEEeeccee----ecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC--
Q psy15989        248 YVVFTDVKRVHIYPTFNSSN--YLGDIALLQLSSDV----DYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE--  319 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~--~~nDIall~L~~~v----~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~--  319 (363)
                      ..+...|.++++||+|+...  ..||||||+|+.++    .|+++|+|||||.....     ...+..+.++|||.+.  
T Consensus        95 ~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~-----~~~~~~~~~~g~G~~~~~  169 (276)
T 2vnt_A           95 GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYND-----PQFGTSCEITGFGKENST  169 (276)
T ss_dssp             TCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCC-----CCTTCEEEEEESCCSSTT
T ss_pred             ceEEEEEEEEEEccccccccccccchhhhhhhhccccccccCccccccccccccccc-----ccccceEEEEEeeccccC
Confidence            45678899999999998654  46899999998765    68999999999976543     3567899999999874  


Q ss_pred             CCCccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        320 NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       320 ~~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ....+..|+++.++++++++|+..+.  ....+.+.|+|++..
T Consensus       170 ~~~~~~~l~~~~~~i~~~~~C~~~~~--~~~~~~~~~~~~~~~  210 (276)
T 2vnt_A          170 DYLYPEQLKMTVVKLISHRECQQPHY--YGSEVTTKMLCAADP  210 (276)
T ss_dssp             CSCCCSBCEEEEEEEECHHHHTSTTT--TGGGSCTTEEEEECT
T ss_pred             CCCcchhheeeeeeEecHHHhhhhhc--cCcccCccceeeccC
Confidence            23457889999999999999987543  233466778888653

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.53  E-value=1.4e-15  Score=146.16  Aligned_cols=112  Identities=18%  Similarity=0.223  Sum_probs=83.0

Q ss_pred             EEeeeEEEEcCCCCCC---------CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC
Q psy15989        251 FTDVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND  321 (363)
Q Consensus       251 ~~~V~~ii~h~~y~~~---------~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~  321 (363)
                      ...|.++++||+|+..         ++.||||||||++|+.|+++|+|||||...........+.+..|+++|||.+...
T Consensus       280 ~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~  359 (497)
T 1rrk_A          280 DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQ  359 (497)
T ss_dssp             CEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSS
T ss_pred             eeeeEEEEeCCCccccccccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccccCCCCchhcccccccCCc
Confidence            4579999999999864         5789999999999999999999999996431000001345788999999976422


Q ss_pred             --------CccccceEEEeceee---cccccccCcc--cc------ccCCCCCeEEeccC
Q psy15989        322 --------RVSEELKMAIMPIVS---HQQCLWSNPQ--FF------SQFTSDETFCAGFR  362 (363)
Q Consensus       322 --------~~~~~L~~~~v~ii~---~~~C~~~~~~--~~------~~~i~~~~iCag~~  362 (363)
                              ..+..|+++.+++++   +++|++.+..  .|      ...++++|||||..
T Consensus       360 ~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~  419 (497)
T 1rrk_A          360 DIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGV  419 (497)
T ss_dssp             EEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESS
T ss_pred             cccceeeccCCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCC
Confidence                    135789999999999   6899753211  12      13478999999863

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.49  E-value=2.8e-13  Score=116.23  Aligned_cols=160  Identities=22%  Similarity=0.184  Sum_probs=87.6

Q ss_pred             CcceEEEEEeeC------CceeEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeee
Q psy15989         31 WPWHVALYRTEG------INLSYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQV  103 (363)
Q Consensus        31 ~Pw~v~l~~~~~------~~~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V  103 (363)
                      -|.+|.|.....      ......++|+||+++ ||||||||+..        ...+.|.++.           .+.+.+
T Consensus        41 ~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~~--------~~~i~V~~~~-----------g~~~~a  101 (231)
T 3tjo_A           41 APAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN--------KHRVKVELKN-----------GATYEA  101 (231)
T ss_dssp             GGGEEEEEEEEECTTSSCEEEEEEEEEEECSTTCEEEEETTTCCS--------SSEEEEECTT-----------SCEEEE
T ss_pred             cCcEEEEEEEeccccCCCccccceEEEEEEeCCCEEEEchhcccC--------CceEEEEcCC-----------CCEEEE
Confidence            478888865431      111267999999998 99999999964        3567776542           123445


Q ss_pred             eEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeE
Q psy15989        104 KRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS  183 (363)
Q Consensus       104 ~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~  183 (363)
                      +.+..+|       .+|||||+|+.+.    .+.|+.|+.....      ..+. .+. ..|||.....   ....++.+
T Consensus       102 ~v~~~d~-------~~DlAlL~l~~~~----~~~~~~l~~~~~~------~~G~-~v~-~~G~p~g~~~---~~~~g~vs  159 (231)
T 3tjo_A          102 KIKDVDE-------KADIALIKIDHQG----KLPVLLLGRSSEL------RPGE-FVV-AIGSPFSLQN---TVTTGIVS  159 (231)
T ss_dssp             EEEEEET-------TTTEEEEECCCSS----CCCCCCBCCGGGC------CTTC-EEE-EEEEEETTEE---EEEEEEEE
T ss_pred             EEEEecC-------CCCEEEEEecCCC----CCCceecCCcCCC------CCCC-EEE-EEECCCCCCC---ceeeEEEe
Confidence            5555555       3599999999763    4567777544321      1122 222 3566532110   01122222


Q ss_pred             EEEeec-CeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        184 ITVARD-GLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       184 ~~~~~~-~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      ...... ....+... ...+......|.|||||||+.. +  ..++||+++..
T Consensus       160 ~~~~~~~~~~~~~~~-~~~i~~da~i~~G~SGGPLv~~-~--G~vVGI~s~~~  208 (231)
T 3tjo_A          160 TTQRGGKELGLRNSD-MDYIQTDAIINYGNAGGPLVNL-D--GEVIGINTLKV  208 (231)
T ss_dssp             ECC--------------CCEEESSCCCTTTTTSEEECT-T--SCEEEEEEEEE
T ss_pred             eccccccccccCCCc-ccEEEEcCCcCCCCchhHeecC-C--CeEEEEEeEEe
Confidence            110000 00000000 0111223467899999999943 2  26999999853

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.47  E-value=1.3e-13  Score=118.82  Aligned_cols=145  Identities=17%  Similarity=0.148  Sum_probs=83.1

Q ss_pred             eEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEE
Q psy15989         46 SYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALL  124 (363)
Q Consensus        46 ~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl  124 (363)
                      .+.|+|+||+++ ||||||||+..        ...+.|+++.-           +.+.++-+.    ++   ..+|||||
T Consensus        55 ~~~gsG~iI~~~g~ILTnaHvv~~--------~~~i~V~~~~g-----------~~~~a~vv~----~d---~~~DlAll  108 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTNYHVVGG--------ADNITVTMLDG-----------SKYDAEYIG----GD---EELDIAVI  108 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHSS--------CSSCEEECTTS-----------CEEEBCCCE----EE---TTTTEEEE
T ss_pred             CceEEEEEEeCCCEEEEChHHhCC--------CCEEEEEECCC-----------CEEEEEEEE----Ec---CCCCEEEE
Confidence            578999999986 99999999964        34577776531           223332121    11   35799999


Q ss_pred             EeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEeecC-eeeccccceEEec
Q psy15989        125 QLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDG-LRVCDTKHYVVFT  203 (363)
Q Consensus       125 ~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~-~~~C~~~~~~~~~  203 (363)
                      ||+.++   +.++|++|+.....      ..+. .+. ..|||....   .....++++....... ...|. .+.....
T Consensus       109 kl~~~~---~~~~~~~l~~s~~~------~~G~-~v~-~iG~p~g~~---~~vt~Givs~~~r~~~~~~~~~-~~~~~i~  173 (239)
T 1l1j_A          109 KIKASD---KKFPYLEFGDSDKV------KIGE-WAI-AIGNPLGFQ---HTVTVGVVSATNRRIPKPDGSG-YYVGLIQ  173 (239)
T ss_dssp             EBCCSS---SCCCCCEECCGGGC------CTTC-EEE-EEECTTSSS---CEEEEEEEEEEEEEEECTTSSC-EEEEEEE
T ss_pred             EEcCCC---CCCceEEecCccCC------cccc-EEE-EEECCCCCC---CcEEEEEEeccccccccCCCcc-ccCCEEE
Confidence            999875   46789999754321      1122 222 456654211   1122333332211100 00010 1122223


Q ss_pred             CCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        204 DVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       204 ~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .....|.|||||||+.. ++  .++||+++.
T Consensus       174 tda~i~~G~SGGPLv~~-~G--~vvGI~s~~  201 (239)
T 1l1j_A          174 TDAAINPGNSGGPLLNI-HG--EVIGINTAI  201 (239)
T ss_dssp             ESSCCCTTTTTSEEECS-SS--EEEEEECCC
T ss_pred             ECCCCCCCCccHHhccC-CC--eEEEEEeee
Confidence            34678999999999953 22  799999874

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.46  E-value=8.3e-15  Score=141.06  Aligned_cols=113  Identities=24%  Similarity=0.279  Sum_probs=80.5

Q ss_pred             eEEEeeeEEEEcCCCCCC---------CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC
Q psy15989        249 VVFTDVKRVHIYPTFNSS---------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE  319 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~---------~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~  319 (363)
                      .+...|.++++||+|+..         ++.||||||||++|+.|+++|+|||||.............+..|+++|||.+.
T Consensus       287 ~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~  366 (509)
T 2odp_A          287 GKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLN  366 (509)
T ss_dssp             CEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSC
T ss_pred             CceeeeEEEEECCCCccccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccCCCCccccccccccc
Confidence            456789999999999874         57899999999999999999999999964310000112457889999999775


Q ss_pred             CCCccc-----cceEEEecee---ecccccccCcc---cc------ccCCCCCeEEecc
Q psy15989        320 NDRVSE-----ELKMAIMPIV---SHQQCLWSNPQ---FF------SQFTSDETFCAGF  361 (363)
Q Consensus       320 ~~~~~~-----~L~~~~v~ii---~~~~C~~~~~~---~~------~~~i~~~~iCag~  361 (363)
                      ....+.     ..++++++++   ++++|+..+..   .|      ...++++|||||.
T Consensus       367 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~  425 (509)
T 2odp_A          367 KQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT  425 (509)
T ss_dssp             SSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECC
T ss_pred             cccceeeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCC
Confidence            443332     1246666664   68999864211   12      2358899999985

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.45  E-value=1e-12  Score=118.75  Aligned_cols=169  Identities=18%  Similarity=0.157  Sum_probs=91.2

Q ss_pred             CCcceEEEEEeeCCceeEEEEEEEeeC-CEEEeeccCcccCCCCC-cccCCcEEEEeceecccccCCCCCceeeeeeEEE
Q psy15989         30 QWPWHVALYRTEGINLSYVCGGSLVSV-NYVITAAHCVTKKPYDK-PVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVH  107 (363)
Q Consensus        30 ~~Pw~v~l~~~~~~~~~~~CgGsLIs~-~~VLTAAhC~~~~~~~~-~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~  107 (363)
                      ..|++|.|..... .....|+|+||++ .||||||||+....... -.....+.|+++.-           +.+.++ ++
T Consensus        15 ~~~svV~I~~~~~-~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g-----------~~~~a~-vv   81 (324)
T 1y8t_A           15 VVPSVVMLETDLG-RQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDG-----------RTAPFT-VV   81 (324)
T ss_dssp             HGGGEEEEEEEC-----CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETTC-----------CEECEE-EE
T ss_pred             hcCcEEEEEEEcc-CCCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCCC-----------CEEEEE-EE
Confidence            4699999976432 2267899999998 69999999996421000 00023677877631           223332 22


Q ss_pred             ECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEe
Q psy15989        108 IYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVA  187 (363)
Q Consensus       108 ~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~  187 (363)
                       +  |+   ..+|||||||+.+    ..++|++|+.....      ..+. .+. ..|||....   .....++.+....
T Consensus        82 -~--~d---~~~DlAllkl~~~----~~~~~~~l~~~~~~------~~G~-~v~-~~G~p~g~~---~~~~~G~vs~~~~  140 (324)
T 1y8t_A           82 -G--AD---PTSDIAVVRVQGV----SGLTPISLGSSSDL------RVGQ-PVL-AIGSPLGLE---GTVTTGIVSALNR  140 (324)
T ss_dssp             -E--CC---TTTTEEEEEECSC----CSCCCCEECCSTTC------CTTC-EEE-EEECGGGCT---TEEEEEEEEEEEE
T ss_pred             -E--eC---CCCCEEEEEECCC----CCCceEEecCcccC------CCCC-EEE-EEEcCCCCC---CcEeeeEEeeccc
Confidence             1  22   2579999999987    45789999764331      1122 222 456643210   0112222222111


Q ss_pred             ecC-eeecc--ccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        188 RDG-LRVCD--TKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       188 ~~~-~~~C~--~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      ... .....  ......+......|.|||||||+.. ++  .++||+++..
T Consensus       141 ~~~~~~~~g~~~~~~~~i~~d~~~~~G~SGGPlv~~-~G--~vvGI~s~~~  188 (324)
T 1y8t_A          141 PVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNM-NA--QLVGVNSAIA  188 (324)
T ss_dssp             EECC-------CCCEEEEEECSCCCTTCTTEEEECT-TS--EEEEEEEEEC
T ss_pred             ccccccccCcccccCCEEEEcCCCCCCCccCcEECC-CC--eEEEEEeeec
Confidence            000 00000  0111222234678999999999953 22  7999999854

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.43  E-value=2.4e-14  Score=144.03  Aligned_cols=112  Identities=18%  Similarity=0.231  Sum_probs=84.5

Q ss_pred             EEeeeEEEEcCCCCCCC---------CCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC
Q psy15989        251 FTDVKRVHIYPTFNSSN---------YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND  321 (363)
Q Consensus       251 ~~~V~~ii~h~~y~~~~---------~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~  321 (363)
                      ...|.++++||+|+..+         +.||||||||++|+.|+++|+|||||.............+..|+++|||.+...
T Consensus       522 ~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~  601 (741)
T 3hrz_D          522 DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQ  601 (741)
T ss_dssp             CEEEEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSS
T ss_pred             EEEEEEEEECCCCCcccccccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCccccccccccccc
Confidence            45789999999998653         689999999999999999999999995431111112356788999999987532


Q ss_pred             C--------ccccceEEEeceee---cccccccCcc--cc------ccCCCCCeEEeccC
Q psy15989        322 R--------VSEELKMAIMPIVS---HQQCLWSNPQ--FF------SQFTSDETFCAGFR  362 (363)
Q Consensus       322 ~--------~~~~L~~~~v~ii~---~~~C~~~~~~--~~------~~~i~~~~iCag~~  362 (363)
                      .        .+..|+++.+++++   ++.|+..+..  .|      ...++++|||||..
T Consensus       602 ~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~  661 (741)
T 3hrz_D          602 DIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGV  661 (741)
T ss_dssp             EEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESS
T ss_pred             cccceeccccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCc
Confidence            1        36789999999998   7899863221  11      24689999999864

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.40  E-value=2.4e-12  Score=117.36  Aligned_cols=145  Identities=17%  Similarity=0.152  Sum_probs=86.0

Q ss_pred             EEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEE
Q psy15989         47 YVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ  125 (363)
Q Consensus        47 ~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~  125 (363)
                      ..++|+||+++ ||||||||+..        ...+.|.++.           .+.+.++-+..++       .+||||||
T Consensus        53 g~GSG~iI~~~G~IlT~aHvv~~--------~~~i~V~~~~-----------g~~~~a~~v~~d~-------~~DlAlLk  106 (348)
T 3qo6_A           53 GSGSGFVWDKQGHIVTNYHVIRG--------ASDLRVTLAD-----------QTTFDAKVVGFDQ-------DKDVAVLR  106 (348)
T ss_dssp             EEEEEEEEETTTEEEECHHHHTT--------CSEEEEECTT-----------SCEEEEEEEEEEG-------GGTEEEEE
T ss_pred             ceEEEEEEeCCCEEEECHHHhCC--------CcEEEEEECC-----------CCEEEEEEEEEcC-------cCCEEEEE
Confidence            46999999998 99999999964        3567776542           1234444455554       35999999


Q ss_pred             eCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEE-EeecCeeeccccceEEecC
Q psy15989        126 LSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSIT-VARDGLRVCDTKHYVVFTD  204 (363)
Q Consensus       126 L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~-~~~~~~~~C~~~~~~~~~~  204 (363)
                      |+.|.   +.++|++|+.....      ..|. .+. ..|||....  . ....++++.. ..+.....|.. ....+..
T Consensus       107 l~~~~---~~~~~i~l~~s~~~------~~G~-~v~-~iG~p~g~~--~-~~~~g~vs~~~~~~~~~~~~~~-~~~~i~~  171 (348)
T 3qo6_A          107 IDAPK---NKLRPIPVGVSADL------LVGQ-KVF-AIGNPFGLD--H-TLTTGVISGLRREISSAATGRP-IQDVIQT  171 (348)
T ss_dssp             CCCCG---GGCCCCCBCCSTTC------CTTC-EEE-EEECGGGCT--T-EEEEEEEEEEEEEECCSSSSSC-EEEEEEE
T ss_pred             EcCCC---CCceeEEecCcccC------CCCC-EEE-EEECCCCCC--C-cEeEEEEEeeccccccccCCCc-ccCEEEE
Confidence            99872   35789999765431      1122 232 456664211  1 1122333221 11111112221 1223334


Q ss_pred             CCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        205 VANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       205 ~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      ....|.|||||||+.. ++  .++||+++..
T Consensus       172 da~i~~G~SGGPLvn~-~G--~vvGI~s~~~  199 (348)
T 3qo6_A          172 DAAINPGNSGGPLLDS-SG--TLIGINTAIY  199 (348)
T ss_dssp             CSCCCTTCTTCEEECT-TS--CEEEEEEEEE
T ss_pred             eCCcCCCCcHHHhhCC-CC--eEEEEEEeee
Confidence            5678999999999953 23  6899999865

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.39  E-value=5.7e-12  Score=114.22  Aligned_cols=160  Identities=21%  Similarity=0.177  Sum_probs=87.6

Q ss_pred             CcceEEEEEeeC------CceeEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeee
Q psy15989         31 WPWHVALYRTEG------INLSYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQV  103 (363)
Q Consensus        31 ~Pw~v~l~~~~~------~~~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V  103 (363)
                      .|-+|.|.....      ......++|+||+++ ||||||||+..        ...+.|.++.           ...+.+
T Consensus        24 ~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~ILTaaHvv~~--------~~~i~V~~~~-----------g~~~~a   84 (332)
T 3num_A           24 APAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN--------KHRVKVELKN-----------GATYEA   84 (332)
T ss_dssp             GGGEEEEEEEEECTTSSCEEEEEEEEEEEEETTTEEEECTTTCCT--------TSEEEEEETT-----------SCEEEE
T ss_pred             cCcEEEEEEEeccccCCCcceeeeEEEEEEeCCCEEEEChHHcCC--------CCEEEEEECC-----------CCEEEE
Confidence            366777754320      112467999999998 99999999964        3467776642           134556


Q ss_pred             eEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeE
Q psy15989        104 KRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS  183 (363)
Q Consensus       104 ~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~  183 (363)
                      +.+..||.       +|||||+|+.+    ..+.++.|+.....      ..+. .+. ..|||.....   ....++.+
T Consensus        85 ~~~~~d~~-------~DlAlL~l~~~----~~~~~~~l~~~~~~------~~G~-~v~-~~G~p~g~~~---~~~~g~vs  142 (332)
T 3num_A           85 KIKDVDEK-------ADIALIKIDHQ----GKLPVLLLGRSSEL------RPGE-FVV-AIGSPFSLQN---TVTTGIVS  142 (332)
T ss_dssp             EEEEEETT-------TTEEEEEECCS----SCCCCCCBCCTTSC------CTTC-EEE-EECC-----C---CEEEEEEE
T ss_pred             EEEEecCC-------CCeEEEEEcCC----CCCceeeecCcccC------CCCC-EEE-EEECCCCCCc---ceeeeEEE
Confidence            66777764       59999999986    34667788654331      1122 222 4566643211   01122222


Q ss_pred             EEEeec-CeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        184 ITVARD-GLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       184 ~~~~~~-~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      ...... ....+.... .........|.|||||||+... +  .++||+++..
T Consensus       143 ~~~~~~~~~~~~~~~~-~~i~~d~~i~~G~SGGPlv~~~-G--~vvGI~s~~~  191 (332)
T 3num_A          143 TTQRGGKELGLRNSDM-DYIQTDAIINYGNAGGPLVNLD-G--EVIGINTLKV  191 (332)
T ss_dssp             EC---------------CCEEESSCCCTTTTTSEEEETT-S--CEEEEEEEEE
T ss_pred             eecccccccCcCCCcC-CEEEEECCcCCCCcHHHhhCCC-C--cEEEEEeeEe
Confidence            211000 000011000 0111234578899999999532 3  6899999864

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.36  E-value=8.3e-12  Score=107.62  Aligned_cols=157  Identities=20%  Similarity=0.225  Sum_probs=90.8

Q ss_pred             CcceEEEEEeeCCc-------eeEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeee
Q psy15989         31 WPWHVALYRTEGIN-------LSYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ  102 (363)
Q Consensus        31 ~Pw~v~l~~~~~~~-------~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~  102 (363)
                      -|-+|.|.......       ....++|+||+++ ||||||||+..        ...+.|.++.           .+.+.
T Consensus        30 ~~sVV~I~~~~~~~~~~~~~~~~~~GsG~ii~~~G~IlTaaHvv~~--------~~~~~V~~~~-----------g~~~~   90 (237)
T 3lgi_A           30 APAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------ADQIIVALQD-----------GRVFE   90 (237)
T ss_dssp             GGGEEEEEEECCTTTCTTSCCEEEEEEEEEEETTTEEEEEHHHHTT--------CSEEEEECTT-----------SCEEE
T ss_pred             CCcEEEEEEEecccCcccccccceEEEEEEEeCCCEEEEeeeecCC--------CCEEEEEeCC-----------CCEEE
Confidence            46778886554221       2457999999998 99999999964        3456666532           13455


Q ss_pred             eeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeee
Q psy15989        103 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIV  182 (363)
Q Consensus       103 V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~  182 (363)
                      ++-+..||.       +|||||||+.+.    .+.|+.|+.....      ..+. .+. ..|||....   .....+++
T Consensus        91 a~vv~~d~~-------~DlAll~l~~~~----~~~~~~l~~~~~~------~~G~-~v~-~~G~p~~~~---~~~~~g~v  148 (237)
T 3lgi_A           91 ALLVGSDSL-------TDLAVLKINATG----GLPTIPINARRVP------HIGD-VVL-AIGNPYNLG---QTITQGII  148 (237)
T ss_dssp             EEEEEEETT-------TTEEEEECCCSS----CCCCCCCCTTCCC------CTTB-EEE-EEECGGGSC---SEEEEEEE
T ss_pred             EEEEEEcCC-------CCEEEEEecCCC----CCceEeccCcccC------CCCC-EEE-EEECCCCCC---CcEEEEEE
Confidence            555666664       599999999864    3567888654331      1122 222 355554211   11222333


Q ss_pred             EEEEeecCeeecc-ccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        183 SITVARDGLRVCD-TKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       183 ~~~~~~~~~~~C~-~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      +...    ...+. ......+......|.|||||||+.. ++  .++||+++..
T Consensus       149 s~~~----~~~~~~~~~~~~i~~d~~i~~G~SGGPlv~~-~G--~vvGI~s~~~  195 (237)
T 3lgi_A          149 SATG----RIGLNPTGRQNFLQTDASINHGNSGGALVNS-LG--ELMGINTLSF  195 (237)
T ss_dssp             EEEC----CSSCCTTSCSCCEEECSCCCTTCTTCEEECT-TC--CEEEEECCCC
T ss_pred             Eecc----cccccCCCcCCEEEEcCccCCCCchHHeeCC-CC--eEEEEEeeee
Confidence            3211    11111 1111112234567999999999953 33  6999998743

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.33  E-value=9.6e-14  Score=118.15  Aligned_cols=84  Identities=8%  Similarity=0.086  Sum_probs=70.3

Q ss_pred             EEeeeEEEEcCCCC-CCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccceE
Q psy15989        251 FTDVKRVHIYPTFN-SSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKM  329 (363)
Q Consensus       251 ~~~V~~ii~h~~y~-~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~  329 (363)
                      ..+|.++++||+|+ .....||||||||++|  |+++++|||||....       ..+..|+++|||.+..+..+..|++
T Consensus        76 ~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~--~~~~v~pi~l~~~~~-------~~g~~~~~~Gwg~~~~~~~~~~l~~  146 (215)
T 1p3c_A           76 SANMTEFYVPSGYINTGASQYDFAVIKTDTN--IGNTVGYRSIRQVTN-------LTGTTIKISGYPGDKMRSTGKVSQW  146 (215)
T ss_dssp             CEEEEEEECCHHHHHHCCGGGCCEEEEESSC--HHHHHCCCCBCCCSC-------CTTCEEEEEECCHHHHHHHSSCCCE
T ss_pred             eEEEEEEEeCCccccCCCcccCEEEEEECCC--CcccceeeecCCCcc-------cCCCeEEEecCCCCCcccccceech
Confidence            46789999999994 5677899999999996  789999999997542       4588999999997643345678999


Q ss_pred             EEeceeeccccccc
Q psy15989        330 AIMPIVSHQQCLWS  343 (363)
Q Consensus       330 ~~v~ii~~~~C~~~  343 (363)
                      +.++++++++|+..
T Consensus       147 ~~~~~~~~~~c~~~  160 (215)
T 1p3c_A          147 EMSGSVTREDTNLA  160 (215)
T ss_dssp             EEEEECCEECSSEE
T ss_pred             hccCccCcccchhe
Confidence            99999999999754

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.29  E-value=1.3e-11  Score=111.49  Aligned_cols=154  Identities=17%  Similarity=0.152  Sum_probs=87.7

Q ss_pred             CcceEEEEEeeC------CceeEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeee
Q psy15989         31 WPWHVALYRTEG------INLSYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQV  103 (363)
Q Consensus        31 ~Pw~v~l~~~~~------~~~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V  103 (363)
                      -|-+|.|.....      ......|+|+||+++ ||||+|||+..        ...+.|+++.-           +.+.+
T Consensus        25 ~~sVV~I~~~~~~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~--------~~~i~V~~~~g-----------~~~~a   85 (325)
T 1lcy_A           25 APAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHVVAD--------RRRVRVRLLSG-----------DTYEA   85 (325)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEEEEEEEETTTEEEECHHHHTT--------CSEEEEECTTS-----------CEEEE
T ss_pred             CCcEEEEEEEecCccCCCccccccEEEEEEeCCCEEEECHHHcCC--------CCEEEEEeCCC-----------CEEEE
Confidence            467777754211      012478999999998 99999999964        34677776531           22333


Q ss_pred             eEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeE
Q psy15989        104 KRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS  183 (363)
Q Consensus       104 ~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~  183 (363)
                      + ++ +  |+   ..+|||||||+.+.    .++|++|+.....      ..+. .+. ..|||....   .....+   
T Consensus        86 ~-v~-~--~d---~~~DlAllkl~~~~----~~~~~~l~~~~~~------~~G~-~v~-~~G~p~~~~---~~v~~G---  140 (325)
T 1lcy_A           86 V-VT-A--VD---PVADIATLRIQTKE----PLPTLPLGRSADV------RQGE-FVV-AMGSPFALQ---NTITSG---  140 (325)
T ss_dssp             E-EE-E--EE---TTTTEEEEECCCSS----CCCCCCBCCGGGC------CTTC-EEE-ECCCTTSSS---SCCEEE---
T ss_pred             E-EE-E--EC---CCCCEEEEEEcCCC----CCceEEecccccC------CCCC-EEE-EEECCCCCC---CcEEeE---
Confidence            3 22 1  22   25799999999763    4678888754220      1122 222 467775321   111112   


Q ss_pred             EEEeecCeeecccc-------ceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        184 ITVARDGLRVCDTK-------HYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       184 ~~~~~~~~~~C~~~-------~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                          +++...|...       ....+......|.|+|||||+.. ++  .++||+++..
T Consensus       141 ----~vs~~~~~~~~~g~~~~~~~~i~~d~~~~~G~SGGPl~~~-~G--~vVGI~s~~~  192 (325)
T 1lcy_A          141 ----IVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNL-DG--EVIGVNTMKV  192 (325)
T ss_dssp             ----EBCSCSCC---------CCCCEEESSCCSTTTTTSEEEET-TS--CEEEEEEEEE
T ss_pred             ----EEecccccccccCCCCCCCCEEEEcCCCCCCCccccEECC-CC--EEEEEEeEee
Confidence                2222233210       00111123567999999999953 23  7999999854

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.29  E-value=2.9e-11  Score=108.84  Aligned_cols=158  Identities=21%  Similarity=0.241  Sum_probs=86.4

Q ss_pred             CcceEEEEEeeCC-------ceeEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeee
Q psy15989         31 WPWHVALYRTEGI-------NLSYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ  102 (363)
Q Consensus        31 ~Pw~v~l~~~~~~-------~~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~  102 (363)
                      -|.+|.|......       .....|+|+||+++ ||||||||+..        ...+.|.++.           .+.+.
T Consensus        19 ~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~~--------~~~i~V~~~~-----------g~~~~   79 (318)
T 1te0_A           19 APAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------ADQIIVALQD-----------GRVFE   79 (318)
T ss_dssp             GGGEEEEEEEEECSSSSCCEEEEEEEEEEECSTTCEEEEEHHHHTT--------CSEEEEECTT-----------SCEEE
T ss_pred             CCcEEEEEeEeccCCcccccccCccEEEEEEeCCCEEEECHHHcCC--------CCEEEEEeCC-----------CCEEE
Confidence            3677777554311       12578999999998 99999999964        3456776542           12233


Q ss_pred             eeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeee
Q psy15989        103 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIV  182 (363)
Q Consensus       103 V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~  182 (363)
                      ++-+..+       ..+||||||++.+    ..+.|++|+.....      ..+. .+. ..|||.-.   ......+++
T Consensus        80 a~v~~~d-------~~~DlAllk~~~~----~~~~~~~l~~~~~~------~~G~-~v~-~~G~p~g~---~~~~~~g~v  137 (318)
T 1te0_A           80 ALLVGSD-------SLTDLAVLIIKAT----GGLPTIPINARRVP------HIGD-VVL-AIGNPYNL---GQTITQGII  137 (318)
T ss_dssp             EEEEEEE-------TTTTEEEEECCCS----SCCCCCCCCTTCCC------CTTC-EEE-EECCCSSS---SCCEEEEEE
T ss_pred             EEEEEeC-------CCceEEEEEEeCC----CCCceEEeeCccCC------CCCC-EEE-EEEcCCCC---CCcEEeeEE
Confidence            3322222       2579999999986    35678888754321      1122 222 34543211   011122333


Q ss_pred             EEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        183 SITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       183 ~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      +...... ..  .......+......|.|+|||||+.. ++  .++||+++..
T Consensus       138 s~~~~~~-~~--~~~~~~~i~~d~~~~~G~SGGPl~~~-~G--~vvGI~s~~~  184 (318)
T 1te0_A          138 SATGRIG-LN--PTGRQNFLQTDASINHGNSGGALVNS-LG--ELMGINTLSF  184 (318)
T ss_dssp             EECCCCC-CC--TTCSCCSEEESSCCCTTTTTSEEECT-TC--CEEEEEECCS
T ss_pred             ecccccc-cC--CCCcCCEEEECCCCCCCCCcCceECC-CC--eEEEEEeeee
Confidence            3211000 00  00011111124578999999999953 23  7999998753

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.13  E-value=2e-10  Score=98.98  Aligned_cols=142  Identities=20%  Similarity=0.228  Sum_probs=76.1

Q ss_pred             eEEEEEEEeeCC--EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEE
Q psy15989         46 SYVCGGSLVSVN--YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL  123 (363)
Q Consensus        46 ~~~CgGsLIs~~--~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIAL  123 (363)
                      ...++|.||+++  ||||+|||+..        ...+.|.+..           ...+.++-+..+|.       +||||
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHvv~~--------a~~i~V~~~d-----------g~~~~a~vv~~d~~-------~DlAl  115 (245)
T 3sti_A           62 EGLGSGVIINASKGYVLTNNHVINQ--------AQKISIQLND-----------GREFDAKLIGSDDQ-------SDIAL  115 (245)
T ss_dssp             --CCEEEEEETTTTEEEECGGGC------------CEEEECTT-----------SCEEEEEEEEEETT-------TTEEE
T ss_pred             cceEEEEEEeCCCCEEEEcHHHhCC--------CCEEEEEECC-----------CCEEEEEEEEecCC-------CCEEE
Confidence            346999999998  99999999964        3467776542           13445555556653       59999


Q ss_pred             EEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccceEEec
Q psy15989        124 LQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT  203 (363)
Q Consensus       124 l~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  203 (363)
                      |||+.+.    .+.++.|......      ..|....  ..|+|.-..   .....++++.....   ..-...+...+.
T Consensus       116 Lkv~~~~----~~~~~~l~~s~~~------~~G~~v~--aiG~P~g~~---~~vt~G~vs~~~~~---~~~~~~~~~~i~  177 (245)
T 3sti_A          116 LQIQNPS----KLTQIAIADSDKL------RVGDFAV--AVGNPFGLG---QTATSGIVSALGRS---GLNLEGLENFIQ  177 (245)
T ss_dssp             EEESSCC----SCCCCCBCCGGGC------CTTBEEE--EEECGGGSC---CEEEEEEEEECSSC---SSCCTTCSSCEE
T ss_pred             EEeccCC----CCceeeecCcCCC------CCCCEEE--EEECCCCCC---CcEEeeEEeeeccc---ccCCCCccCEEE
Confidence            9998753    3567777643321      1122111  244432110   11222333321110   000011111112


Q ss_pred             CCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        204 DVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       204 ~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .....|.|+|||||+..   .-.++||+++.
T Consensus       178 tda~i~~G~SGGPLvn~---~G~vVGI~s~~  205 (245)
T 3sti_A          178 TDASINRGNSGGALLNL---NGELIGINTAI  205 (245)
T ss_dssp             ESSCCCTTTTTSEEECT---TSCEEEEEECC
T ss_pred             EcCCcCCCcchhHeecC---CCeEEEEEEeE
Confidence            23467899999999942   23799998874

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.10  E-value=4.5e-10  Score=92.86  Aligned_cols=42  Identities=26%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             CccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        206 ANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       206 ~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      ...|.|||||||+...    .++||+++.     ...|....+..+++|..
T Consensus       136 ~~~~~GdSGgpl~~~~----~~vGi~s~~-----~~~~~~~~~~~~~~i~~  177 (187)
T 1hpg_A          136 ACSAGGDSGGAHFAGS----VALGIHSGS-----SGCSGTAGSAIHQPVTE  177 (187)
T ss_dssp             CCCCTTCTTCEEEETT----EEEEEEEEE-----SCCBTTBCCCEEEEHHH
T ss_pred             cccCCCCCCCeEEECC----EEEEEEEee-----CCCCCCCCceEEEEHHH
Confidence            4578999999999652    899999984     22465555677777643

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.09  E-value=2.3e-10  Score=83.98  Aligned_cols=73  Identities=27%  Similarity=0.399  Sum_probs=58.6

Q ss_pred             eeeEEEEeecCeeeccc--------cceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEE
Q psy15989        180 GIVSITVARDGLRVCDT--------KHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF  251 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~--------~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~  251 (363)
                      .|+...+++++.+.|..        .+.|+.....+.|.|||||||++..+++|+|+||+||+     ..+|....|.+|
T Consensus         6 ~L~~~~v~i~~~~~C~~~~~~~i~~~~iCa~~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g-----~~c~~~~~p~vy   80 (97)
T 1yph_E            6 RLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWG-----SSTCSTSTPGVY   80 (97)
T ss_dssp             BCEEEEEEBCCHHHHHHHHGGGCCTTEEEEECSSCBCCTTCTTCEEEEEETTEEEEEEEEEEC-----CTTCCTTSEEEE
T ss_pred             cceEEEEEECCHHHhhHHhcCCCCCceEeecCCCCCCCcCCCCCcEEEEeCCeEEEEEEEEeC-----CCCCCCCCCeEE
Confidence            46678888889989963        23466655678999999999999989999999999994     445666789999


Q ss_pred             EeeeEE
Q psy15989        252 TDVKRV  257 (363)
Q Consensus       252 ~~V~~i  257 (363)
                      ++|..+
T Consensus        81 t~V~~y   86 (97)
T 1yph_E           81 ARVTAL   86 (97)
T ss_dssp             EEHHHH
T ss_pred             EEHHHh
Confidence            998653

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.08  E-value=2.2e-09  Score=97.37  Aligned_cols=144  Identities=21%  Similarity=0.254  Sum_probs=82.7

Q ss_pred             eEEEEEEEeeCC--EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEE
Q psy15989         46 SYVCGGSLVSVN--YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL  123 (363)
Q Consensus        46 ~~~CgGsLIs~~--~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIAL  123 (363)
                      ...++|.||+++  ||||+|||+..        ...+.|.+..           .+.+.++-+..||.       +||||
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHVv~~--------~~~i~V~~~d-----------g~~~~a~vv~~d~~-------~DlAl  115 (345)
T 3stj_A           62 EGLGSGVIINASKGYVLTNNHVINQ--------AQKISIQLND-----------GREFDAKLIGSDDQ-------SDIAL  115 (345)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTT--------EEEEEEECTT-----------SCEEEEEEEEEETT-------TTEEE
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCC--------CCEEEEEeCC-----------CcEEEEEEEEEcCC-------CCEEE
Confidence            467999999997  99999999964        3456666532           24566666777765       49999


Q ss_pred             EEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccceEEec
Q psy15989        124 LQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT  203 (363)
Q Consensus       124 l~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  203 (363)
                      ||++.+.    .+.++.|......      ..|....  ..|+|.-.   ......++++.....   ......+.....
T Consensus       116 Lkv~~~~----~~~~~~l~~s~~~------~~G~~V~--aiG~p~g~---~~~vt~G~Vs~~~~~---~~~~~~~~~~iq  177 (345)
T 3stj_A          116 LQIQNPS----KLTQIAIADSDKL------RVGDFAV--AVGNPFGL---GQTATSGIVSALGRS---GLNLEGLENFIQ  177 (345)
T ss_dssp             EEESSCC----SCCCCCBCCGGGC------CTTBEEE--EEECGGGC---SCEEEEEEEEEEEEC---CSSSSSSCCEEE
T ss_pred             EEEcccC----CCceEeecCcccC------CCCCEEE--EEECCCCC---CCcEEeeEEeeeccc---ccCCCCccCEEE
Confidence            9997653    3556777543321      1122111  24444221   111223344332111   011111111222


Q ss_pred             CCCccCcccccceeEEEEcCccEEEEEEEEEEe
Q psy15989        204 DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVA  236 (363)
Q Consensus       204 ~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~  236 (363)
                      .....|.|+|||||+.. ++  .++||.+....
T Consensus       178 ~da~i~~GnSGGPLvn~-~G--~vVGI~s~~~~  207 (345)
T 3stj_A          178 TDASINRGNSGGALLNL-NG--ELIGINTAILA  207 (345)
T ss_dssp             ECSCCCTTCTTCEEECT-TS--CEEEEEEEEEC
T ss_pred             EecccCCCcCccceeCC-CC--EEEEEEecccc
Confidence            34567899999999943 23  68999887543

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.05  E-value=5.5e-11  Score=101.06  Aligned_cols=61  Identities=10%  Similarity=0.082  Sum_probs=51.4

Q ss_pred             EEeeeEEEEcCCCCC-CCCCCceEEEeecce--eecccceE-eeeeCCCCCCccccccccCCcEEEEEecCCC
Q psy15989        251 FTDVKRVHIYPTFNS-SNYLGDIALLQLSSD--VDYSMYVR-PVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE  319 (363)
Q Consensus       251 ~~~V~~ii~h~~y~~-~~~~nDIall~L~~~--v~~~~~v~-picl~~~~~~~~~~~~~~~~~~~v~GWG~~~  319 (363)
                      ...|+++++||+|+. .+..||||||||++|  +.|++.|+ |++|+...        ..+..|+++|||.+.
T Consensus        70 ~~~v~~~~~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~--------~~g~~~~v~GwG~~~  134 (218)
T 3cp7_A           70 VWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQ--------PRGQYYSAYGYPAAA  134 (218)
T ss_dssp             CEEEEEEEECHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSC--------CSSCEEEEEECCCST
T ss_pred             EEEEEEEEECcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeecC--------CCCCEEEEEeCCCCC
Confidence            356899999999974 567899999999999  89999999 99997532        347889999999874

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.03  E-value=1.4e-09  Score=89.83  Aligned_cols=150  Identities=22%  Similarity=0.287  Sum_probs=78.6

Q ss_pred             eEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEE
Q psy15989         46 SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ  125 (363)
Q Consensus        46 ~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~  125 (363)
                      ...|+.-.+-..+||||+||+...        ..  |.+.          . ..       +++.+|.    .+||||||
T Consensus        14 ~~~CT~Gf~~~~~ilTa~Hc~~~~--------~~--v~~~----------d-g~-------v~~~~~~----~~DiAlik   61 (189)
T 2ea3_A           14 RSRCSIGFAVNGGFITAGHCGRTG--------AT--TANP----------T-GT-------FAGSSFP----GNDYAFVR   61 (189)
T ss_dssp             EEEEECCEEETTEEEECGGGCCTT--------CE--EETT----------T-EE-------EEEEECS----BSCEEEEE
T ss_pred             CCCCccCEEccCeEEEchhcCCCC--------CE--EEeC----------C-cE-------EEeeCCC----CCCEEEEE
Confidence            467996666566999999998531        22  2210          1 11       1222231    46999999


Q ss_pred             eCCcccCCCCcc-----ceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeE-EEEeecCeeecccc-c
Q psy15989        126 LSSDVDYSMYVR-----PVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS-ITVARDGLRVCDTK-H  198 (363)
Q Consensus       126 L~~~~~~~~~v~-----picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~-~~~~~~~~~~C~~~-~  198 (363)
                      |+.+..+++.|+     +++|+.....      ..+...|.  .|.+.-..       .++++ ....+.    -... .
T Consensus        62 l~~~~~~~~~v~~~~g~~v~l~~s~~~------~vG~~v~~--~G~~tG~t-------~G~Vs~~~~~v~----~~~~~~  122 (189)
T 2ea3_A           62 TGAGVNLLAQVNNYSGGRVQVAGHTAA------PVGSAVCR--SGSTTGWH-------CGTITALNSSVT----YPEGTV  122 (189)
T ss_dssp             ECTTCEEEEEEECSSSCEEECCBCCCC------CTTCEEEE--EETTTEEE-------EEEEEEEEEEEE----ETTEEE
T ss_pred             ECCCCccccceEecCCceeecCCCcCC------CCCCEEEE--EEeCCccE-------EEEEEecceEEE----eCCccC
Confidence            999877766665     6777653331      22333442  22221111       11111 111100    0000 0


Q ss_pred             eEEecCCCccC--cccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        199 YVVFTDVANVC--NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       199 ~~~~~~~~~~C--~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      ....  ....|  .|||||||++.  +  .++||+|+..     ..|....+..+++|..+
T Consensus       123 ~~~~--~~~~~~~~GDSGgpl~~~--~--~~vGi~s~~~-----~~c~~~~~~~~~pi~~~  172 (189)
T 2ea3_A          123 RGLI--RTTVCAEPGDSGGSLLAG--N--QAQGVTSGGS-----GNCRTGGTTFFQPVNPI  172 (189)
T ss_dssp             EEEE--EESCCCCTTCTTCEEEET--T--EEEEEEEEEE-----EETTTEEEEEEEEHHHH
T ss_pred             cceE--EeeeeccCCCccCeEEEC--C--EEEEEEeecC-----CCCCCCCcEEEEEHHHH
Confidence            1111  12345  69999999963  3  7999999842     34655556666666543

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.92  E-value=4.6e-09  Score=86.39  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             cccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        210 NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       210 ~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      .|||||||++.  +  .++||+|+..     ..|....+..+++|..
T Consensus       137 ~GDSGgpl~~~--~--~~vGi~s~g~-----~~c~~~~~~~~~pi~~  174 (186)
T 2pfe_A          137 GGDSGGPWLTG--S--QAQGVTSGGT-----GDCRSGGITFFQPINP  174 (186)
T ss_dssp             TTCTTCEEEET--T--EEEEEEEEEE-----EETTTEEEEEEEEHHH
T ss_pred             CCCccCeEEEC--C--EEEEEEeecC-----CCCCCCCcEEEEEHHH
Confidence            69999999963  2  7899999952     3465555566666543

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.82  E-value=4.8e-08  Score=91.52  Aligned_cols=142  Identities=20%  Similarity=0.225  Sum_probs=81.5

Q ss_pred             eEEEEEEEeeCC--EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEE
Q psy15989         46 SYVCGGSLVSVN--YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL  123 (363)
Q Consensus        46 ~~~CgGsLIs~~--~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIAL  123 (363)
                      ...++|.+|+++  ||||+|||+..        ...+.|.+..           ...+.++-+..||.       +||||
T Consensus        62 ~~~GSGfii~~~~G~IlTn~Hvv~~--------a~~i~V~~~d-----------g~~~~a~vv~~d~~-------~DlAl  115 (436)
T 4a8c_A           62 EGLGSGVIINASKGYVLTNNHVINQ--------AQKISIQLND-----------GREFDAKLIGSDDQ-------SDIAL  115 (436)
T ss_pred             ceEEEEEEEECCCCEEEECHHHhCC--------CCEEEEEeCC-----------CCEEEEEEEEEcCC-------CCEEE
Confidence            457999999997  99999999964        3567776532           23556666677764       49999


Q ss_pred             EEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccceEEec
Q psy15989        124 LQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT  203 (363)
Q Consensus       124 l~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  203 (363)
                      ||++.+.    .+.++.|......      ..|... . ..|+|....   .....++++..-..   ......+.....
T Consensus       116 lkv~~~~----~l~~~~l~~s~~~------~~G~~v-~-aiG~P~g~~---~~vt~G~vs~~~r~---~~~~~~~~~~iq  177 (436)
T 4a8c_A          116 LQIQNPS----KLTQIAIADSDKL------RVGDFA-V-AVGNPFGLG---QTATSGIVSALGRS---GLNLEGLENFIQ  177 (436)
T ss_pred             EEecCCC----CCceEeccCcccC------CCCCEE-E-EEEcCCCCC---ccEEEEEEeeeccc---ccCCCCccCEEE
Confidence            9997653    4567888644331      112211 1 244443211   11223333322110   011111112223


Q ss_pred             CCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        204 DVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       204 ~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .....|.|+|||||+... +  .++||.+..
T Consensus       178 ~da~i~~GnSGGPl~n~~-G--~vvGI~~~~  205 (436)
T 4a8c_A          178 TDASINRGNAGGALLNLN-G--ELIGINTAI  205 (436)
T ss_pred             EcCccCCCCCcCcccCCC-C--EEEEEEeee
Confidence            345678999999999532 2  789987654

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=98.70  E-value=2e-07  Score=76.80  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=25.0

Q ss_pred             cccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeee
Q psy15989        210 NGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVK  255 (363)
Q Consensus       210 ~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~  255 (363)
                      .|||||||++.  +  .++||+++..     ..|.......+++|.
T Consensus       140 ~GDSGgpl~~~--~--~~vGi~s~~~-----~~~~~~~~~~~~pi~  176 (188)
T 2oua_A          140 PGDSGGSFISG--T--QAQGVTSGGS-----GNCRTGGTTFYQEVN  176 (188)
T ss_dssp             TTCTTCEEEET--T--EEEEEEEEEE-----EETTTEEEEEEEESH
T ss_pred             CCCccceEEEC--C--EEEEEEeccC-----CCCCCCCceEEEEHH
Confidence            69999999953  3  7999999852     245544445555543

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.63  E-value=8.1e-08  Score=90.23  Aligned_cols=67  Identities=13%  Similarity=0.285  Sum_probs=47.7

Q ss_pred             eEEEEEEEeeC--CEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEE
Q psy15989         46 SYVCGGSLVSV--NYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL  123 (363)
Q Consensus        46 ~~~CgGsLIs~--~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIAL  123 (363)
                      ...++|.||++  .||||+|||+..        ...+.|.+.+           ...+.++-+..||.       +||||
T Consensus        76 ~~~GSGfiI~~~~G~IlTn~HVv~~--------a~~i~V~~~d-----------g~~~~a~vv~~d~~-------~DlAl  129 (451)
T 3pv2_A           76 ESIGSGVIIDPNNGVIITNDHVIRN--------ASLITVTLQD-----------GRRLKARLIGGDSE-------TDLAV  129 (451)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTT--------EEEEEEECTT-----------SCEEECEEEEEETT-------TTEEE
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCC--------CCEEEEEEcC-----------CCEEEEEEEecCcC-------CcEEE
Confidence            45799999997  499999999964        3456666532           23556666777765       49999


Q ss_pred             EEeCCcccCCCCccceEecC
Q psy15989        124 LQLSSDVDYSMYVRPVCLWD  143 (363)
Q Consensus       124 l~L~~~~~~~~~v~picL~~  143 (363)
                      ||++.     +.+.++.|..
T Consensus       130 Lkv~~-----~~l~~~~l~~  144 (451)
T 3pv2_A          130 LKIDA-----KNLKSLVIGD  144 (451)
T ss_dssp             EECCC-----SSCCCCCBCC
T ss_pred             EEEcC-----cCCceeEecC
Confidence            99964     3455666654

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=98.59  E-value=6.2e-08  Score=83.55  Aligned_cols=74  Identities=19%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             EeeeEEEEcCCCCCCCCCCceEEEeecceee---cccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccce
Q psy15989        252 TDVKRVHIYPTFNSSNYLGDIALLQLSSDVD---YSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELK  328 (363)
Q Consensus       252 ~~V~~ii~h~~y~~~~~~nDIall~L~~~v~---~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~  328 (363)
                      ..+..++.|| |+   ..+|||||||+.|+.   |++.++|+||+....      ...|..++++|||.+...   ..|+
T Consensus       105 ~~~~~i~~~~-~~---~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~~------~~~g~~~~v~Gwg~~~~~---~~l~  171 (242)
T 1agj_A          105 YEVKEILQEP-FG---AGVDLALIRLKPDQNGVSLGDKISPAKIGTSND------LKDGDKLELIGYPFDHKV---NQMH  171 (242)
T ss_dssp             EEEEEEESCT-TC---TTSCCEEEEECCCTTSCCHHHHSCCCEECCSTT------CCTTCEEEEEECCTTTST---TCCE
T ss_pred             eeEEEEEeCC-CC---CCCcEEEEEEcCCCccccccccccceecCcccc------CCCCCEEEEEeCCCCCCC---ccce
Confidence            4566778888 75   579999999999964   788999999985432      246889999999976432   2477


Q ss_pred             EEEeceeecc
Q psy15989        329 MAIMPIVSHQ  338 (363)
Q Consensus       329 ~~~v~ii~~~  338 (363)
                      ...+++++..
T Consensus       172 ~~~~~~~~~~  181 (242)
T 1agj_A          172 RSEIELTTLS  181 (242)
T ss_dssp             EEEEEECCGG
T ss_pred             eeeeeEecCC
Confidence            7777777654

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=98.49  E-value=7.7e-08  Score=83.82  Aligned_cols=79  Identities=10%  Similarity=0.030  Sum_probs=52.7

Q ss_pred             eeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCc---cccceEE
Q psy15989        254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRV---SEELKMA  330 (363)
Q Consensus       254 V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~---~~~L~~~  330 (363)
                      +..++.|+     +..||||||||++|+.                       .+..++++|||.++....   +..++..
T Consensus       101 v~~~i~h~-----~~~nDIALLrL~~~v~-----------------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~  152 (268)
T 1arb_A          101 SGSTVKAT-----YATSDFTLLELNNAAN-----------------------PAFNLFWAGWDRRDQNYPGAIAIHHPNV  152 (268)
T ss_dssp             ECEEEEEE-----ETTTTEEEEEESSCCC-----------------------GGGCCEEBCEECCSCCCSCEEEEECGGG
T ss_pred             ccceEecC-----CCCCceEEEEecCCCC-----------------------CCCceEEeCcCccCCCCCcceeeccCCc
Confidence            66778898     3579999999999741                       134578999999864321   2223445


Q ss_pred             EeceeecccccccCccccccCCCCCeEEecc
Q psy15989        331 IMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       331 ~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .++.++...|.... ..|...+.++||||+.
T Consensus       153 ~l~~i~~~~~~~~~-~~~~~~~~~~~iCag~  182 (268)
T 1arb_A          153 AEKRISNSTSPTSF-VAWGGGAGTTHLNVQW  182 (268)
T ss_dssp             CSCEEEEECSCCEE-ECTTSSSCSSEEEEEC
T ss_pred             ccEEEEeecccccc-ccccccccCCeEEEee
Confidence            67778888886321 1134446789999975

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=98.33  E-value=1.4e-07  Score=77.68  Aligned_cols=76  Identities=12%  Similarity=-0.007  Sum_probs=54.5

Q ss_pred             CCCceEEEeecc-eeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccceEEEeceeecccccccCcc
Q psy15989        268 YLGDIALLQLSS-DVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQ  346 (363)
Q Consensus       268 ~~nDIall~L~~-~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~v~ii~~~~C~~~~~~  346 (363)
                      ..||||||||++ ++.|++.++|++|+....      ...|..+.++||+..   ..+..|+.+.+++ +..+|. .   
T Consensus        60 ~~~DiAll~l~~~~~~~~~~v~~~~l~~~~~------~~~g~~v~~~Gw~~~---~~~g~l~~~~~~v-~~~~~~-~---  125 (185)
T 2qa9_E           60 PNNDYGIVRYTNTTIPKDGTVGGQDITSAAN------ATVGMAVTRRGSTTG---THSGSVTALNATV-NYGGGD-V---  125 (185)
T ss_dssp             SBSCEEEEEECCSSSCCCCEETTEECCEECC------CCTTCEEEEEETTTE---EEEEEEEEEEEEE-ECSTTC-E---
T ss_pred             CCCCEEEEEecCCCccccCccceeeeCCccc------CCCCCEEEEecCCCc---eeEeEEEEEEEEE-EcCCCC-E---
Confidence            368999999999 999999999999974321      246889999999742   2356788888885 555553 1   


Q ss_pred             ccccCCCCCeEEe
Q psy15989        347 FFSQFTSDETFCA  359 (363)
Q Consensus       347 ~~~~~i~~~~iCa  359 (363)
                       +.. +.++|+||
T Consensus       126 -~~~-~~~~~~ca  136 (185)
T 2qa9_E          126 -VYG-MIRTNVCA  136 (185)
T ss_dssp             -EEE-EEEESCCC
T ss_pred             -Eec-eEEecccC
Confidence             222 23578887

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.28  E-value=3.5e-06  Score=79.00  Aligned_cols=142  Identities=23%  Similarity=0.281  Sum_probs=73.7

Q ss_pred             eEEEEEEEeeCC--EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEE
Q psy15989         46 SYVCGGSLVSVN--YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIAL  123 (363)
Q Consensus        46 ~~~CgGsLIs~~--~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIAL  123 (363)
                      ...|+|.+|+++  ||||++||+..        ...+.|.+..           ...+..+-+..+|       ..||||
T Consensus        85 ~~~GSG~ii~~~~g~IlTn~HVv~~--------a~~i~V~~~d-----------g~~~~a~vv~~d~-------~~DlAv  138 (448)
T 1ky9_A           85 MALGSGVIIDADKGYVVTNNHVVDN--------ATVIKVQLSD-----------GRKFDAKMVGKDP-------RSDIAL  138 (448)
T ss_dssp             EEEEEEEEEETTTTEEEEEHHHHTT--------EEEEEEEETT-----------SCEEEEEEEEEET-------TTTEEE
T ss_pred             ccEEEEEEEECCCCEEEEChHHhCC--------CCEEEEEECC-----------CCEEEEEEEEEcC-------CCCEEE
Confidence            468999999975  99999999964        3467776642           1233343333333       469999


Q ss_pred             EEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccceEEec
Q psy15989        124 LQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT  203 (363)
Q Consensus       124 l~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  203 (363)
                      |+++.+-    .+.++.|......      ..|....  ..|+|.-.   ......++++..-.. ...  ...+.....
T Consensus       139 lkv~~~~----~~~~~~l~~s~~~------~~G~~V~--aiG~P~g~---~~tvt~Givs~~~r~-~~~--~~~~~~~iq  200 (448)
T 1ky9_A          139 IQIQNPK----NLTAIKMADSDAL------RVGDYTV--AIGNPFGL---GETVTSGIVSALGRS-GLN--AENYENFIQ  200 (448)
T ss_dssp             EEESSCC----SCCCCCBCCGGGC------CTTCEEE--EEECTTSS---SCEEEEEEEEEESSC-C-------CCCCEE
T ss_pred             EEecCCC----CCceEEecccccC------CCCCEEE--EEECCCCC---CCeEEeEEEeecccc-ccC--CCCccCEEE
Confidence            9998642    3456666543220      1111111  12222110   011223444332110 000  001111122


Q ss_pred             CCCccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        204 DVANVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       204 ~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .....+.|+|||||+.. +  -.++||.+..
T Consensus       201 tda~i~~GnSGGpl~n~-~--G~vvGI~~~~  228 (448)
T 1ky9_A          201 TDAAINRGNAGGALVNL-N--GELIGINTAI  228 (448)
T ss_dssp             ESCCCTTSCCCSEEECT-T--SCEEEEEECS
T ss_pred             EcCCCCCCCCCCeeECC-C--CEEEEEEEEe
Confidence            23466889999999953 2  2789998753

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=98.20  E-value=5.4e-05  Score=60.49  Aligned_cols=66  Identities=24%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             eEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEE
Q psy15989         46 SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ  125 (363)
Q Consensus        46 ~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~  125 (363)
                      ...++|.+| +.+|||++||+.+        ...+.|.++          .  ..+..+ ++..|       ..||||||
T Consensus        20 ~~~GSGfii-~g~IlTn~HVV~~--------~~~i~V~~d----------g--~~~~a~-vv~d~-------~~DlAlLk   70 (163)
T 2w5e_A           20 EGKGTGFFS-GNDIVTAAHVVGN--------NTFVNVCYE----------G--LMYEAK-VRYMP-------EKDIAFIT   70 (163)
T ss_dssp             TEEEEEEEE-TTEEEEEHHHHTT--------CSEEEEEET----------T--EEEEEE-EEECC-------SSSEEEEE
T ss_pred             ceeEEEEEE-CCEEEecHHHhCC--------CceEEEEEC----------C--EEEEEE-EEEEC-------CCCEEEEE
Confidence            456899999 8999999999964        345666651          1  123332 33222       46999999


Q ss_pred             eCCcccCCCCccceEecC
Q psy15989        126 LSSDVDYSMYVRPVCLWD  143 (363)
Q Consensus       126 L~~~~~~~~~v~picL~~  143 (363)
                      ++.+.   ..+.|+.|..
T Consensus        71 v~~~~---~~~~~l~l~~   85 (163)
T 2w5e_A           71 CPGDL---HPTARLKLSK   85 (163)
T ss_dssp             CCTTC---CCSCCCCBCS
T ss_pred             ecCCC---CCcceEEcCC
Confidence            98743   2234555543

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=98.08  E-value=2e-06  Score=74.23  Aligned_cols=58  Identities=16%  Similarity=0.336  Sum_probs=46.3

Q ss_pred             EEeeeEEEEcCCCCCCCCCCceEEEeeccee---ecccceEeeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        251 FTDVKRVHIYPTFNSSNYLGDIALLQLSSDV---DYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       251 ~~~V~~ii~h~~y~~~~~~nDIall~L~~~v---~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      ...+..++.|| |+   ..+|||||||+.++   .|++.++|+||+....      ...|..++++||+..
T Consensus        98 ~~~~~~i~~hp-~~---~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~~------~~~g~~v~v~G~p~g  158 (246)
T 1qtf_A           98 KFEAEEIKESP-YG---QGLDLAIIKLKPNEKGESAGDLIQPANIPDHID------IAKGDKYSLLGYPYN  158 (246)
T ss_dssp             CEEEEEEESCT-TC---TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCC------CCTTCEEEEEECCTT
T ss_pred             eEEEEEEEeCC-CC---CCCCEEEEEEeCCccccccccceeeeecCCccc------cCCCCEEEEEECCCC
Confidence            34577788898 64   47899999999998   7888999999985432      246889999999754

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=98.07  E-value=4.3e-05  Score=63.27  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=17.4

Q ss_pred             cccccceeEEEEcCccEEEEEEEEE
Q psy15989        210 NGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       210 ~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .|||||||+.. ++  .++||.+..
T Consensus       140 ~GDSGGPl~~~-~g--~~vGI~s~~  161 (198)
T 2h5c_A          140 RGDSGGSWITS-AG--QAQGVMSGG  161 (198)
T ss_dssp             TTCTTCEEECT-TC--BEEEEEEEE
T ss_pred             CCcceeEEEee-CC--EEEEEEEee
Confidence            69999999932 22  799999985

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=98.04  E-value=7e-06  Score=71.69  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=43.8

Q ss_pred             EeeeEEEEcCCCCCCCCCCceEEEeeccee---ecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC
Q psy15989        252 TDVKRVHIYPTFNSSNYLGDIALLQLSSDV---DYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE  319 (363)
Q Consensus       252 ~~V~~ii~h~~y~~~~~~nDIall~L~~~v---~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~  319 (363)
                      ..+.+++.|+      ..+|||||||++++   .|++.++|+||+....      ...+..++++|||...
T Consensus        80 ~~~~~i~~~~------~~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~------~~~g~~v~v~Gwg~~~  138 (268)
T 1wcz_A           80 FTAEQITKYS------GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAE------TQVNQNITVTGYPGDK  138 (268)
T ss_dssp             EEEEEEEECS------SSSCCEEEEECCCTTSCCHHHHSCCCCBCCCSS------CCTTCEEEEEECCTTS
T ss_pred             EEEEEEecCC------CCCcEEEEEecCcccccccccccceeecccccc------cCCCCEEEEEECCCCC
Confidence            3566777775      36899999999997   5888999999985432      2458899999999653

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=97.99  E-value=1.6e-05  Score=69.57  Aligned_cols=56  Identities=20%  Similarity=0.360  Sum_probs=44.2

Q ss_pred             EeeeEEEEcCCCCCCCCCCceEEEeeccee---ecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC
Q psy15989        252 TDVKRVHIYPTFNSSNYLGDIALLQLSSDV---DYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE  319 (363)
Q Consensus       252 ~~V~~ii~h~~y~~~~~~nDIall~L~~~v---~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~  319 (363)
                      ..+.+++.|+      ..+|||||||++++   .|++.++|+||+....      ...+..++++|||...
T Consensus        80 ~~~~~i~~~~------~~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~------~~~g~~v~v~Gwg~~~  138 (274)
T 2o8l_A           80 FTAEQITKYS------GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAE------TQTNQNITVTGYPGDK  138 (274)
T ss_dssp             EEEEEEEECS------SSSCCEEEEECCCTTSCCTTTSSCCCEECCCTT------CCTTCEEEEEECCTTS
T ss_pred             EEEEEEEeCC------CCCcEEEEEecCccccccccccccccccccccc------ccCCCEEEEEECCCCC
Confidence            4567778886      36899999999997   5889999999985432      2458899999999753

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=97.85  E-value=3.8e-05  Score=63.97  Aligned_cols=54  Identities=22%  Similarity=0.340  Sum_probs=42.0

Q ss_pred             EeeeEEEEcCCCCCCCCCCceEEEeecc--------eeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC
Q psy15989        252 TDVKRVHIYPTFNSSNYLGDIALLQLSS--------DVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE  319 (363)
Q Consensus       252 ~~V~~ii~h~~y~~~~~~nDIall~L~~--------~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~  319 (363)
                      .++.+++.|+      ..+|||||||+.        ++.|++.++|+||+..        ...+..++++|||...
T Consensus        64 ~~~~~i~~~~------~~~DiAll~l~~~~~~~~~~~~~~~~~v~pi~l~~~--------~~~g~~~~~~G~g~~~  125 (204)
T 2vid_A           64 YSIKKIINYP------GKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAG--------AKAGERIKVIGYPHPY  125 (204)
T ss_dssp             EEEEEEEECS------SSSCCEEEEECSEEEEEETTEEEHHHHCCCCCBCSC--------CCTTCEEEEEECCCCC
T ss_pred             EEeeEEecCC------CCCeEEEEEEcCcccccccccccccccccccccCCc--------CCCCCEEEEEeCCCCC
Confidence            4566666654      268999999994        6889999999999752        2458899999999753

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=97.85  E-value=5.9e-05  Score=63.22  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=41.8

Q ss_pred             CCceEEEeecc--------eeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccceEEEeceeec
Q psy15989        269 LGDIALLQLSS--------DVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSH  337 (363)
Q Consensus       269 ~nDIall~L~~--------~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~v~ii~~  337 (363)
                      .+|||||||+.        |+.|++.++|++|+..        ...|..++++|||......  ..| .+.+.+++.
T Consensus        76 ~~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~~--------~~~g~~v~v~G~p~~~~~~--~~l-~~~~g~v~~  141 (210)
T 2as9_A           76 DEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKD--------AKVDDKIKVIGYPLPAQNS--FKQ-FESTGTIKR  141 (210)
T ss_dssp             SSSCEEEEECSEEEEEETTEEEGGGSCCCCCBCSC--------CCTTCEEEEEECSSTTTTT--SCC-EEEEEEEEE
T ss_pred             CCcEEEEEecCccccccccccccccccceeecCCC--------CCCCCEEEEEeCCCCCCCC--cce-EEeeeEEcc
Confidence            68999999998        7899999999999731        2458899999998643211  123 455555543

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=97.69  E-value=5.3e-05  Score=62.90  Aligned_cols=41  Identities=20%  Similarity=0.252  Sum_probs=34.4

Q ss_pred             CCceEEEeecce----eecccceEeeeeCCCCCCccccccccCCcEEEEEecC
Q psy15989        269 LGDIALLQLSSD----VDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGY  317 (363)
Q Consensus       269 ~nDIall~L~~~----v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~  317 (363)
                      .+|||||||+++    +.|++.++|+||+..        ...|..++++||+.
T Consensus        76 ~~DiAll~l~~~~~~~~~~~~~v~pi~l~~~--------~~~g~~v~v~G~p~  120 (200)
T 2w7s_A           76 KEDLAIVHVHETSTEGLNFNKNVSYTKFADG--------AKVKDRISVIGYPK  120 (200)
T ss_dssp             SSSCEEEEECSBCTTSCBGGGSCCCCCBCCC--------CCTTCEEEEEECTT
T ss_pred             cceEEEEEECCCCCCcccccccccceecccc--------CCCCCEEEEEECCC
Confidence            589999999986    999999999999732        24588999999863

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=97.65  E-value=0.00029  Score=70.79  Aligned_cols=65  Identities=17%  Similarity=0.152  Sum_probs=44.1

Q ss_pred             EEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCC
Q psy15989         49 CGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSS  128 (363)
Q Consensus        49 CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~  128 (363)
                      --+|||+|+||+|+||= ..+          -.|.+|.          ....+   +|+.|++|..    .|+++.||.+
T Consensus        58 G~aTLI~pqYiVSvaHn-~gy----------~~v~fG~----------~~n~Y---~iV~rnn~~~----~Dy~~pRL~K  109 (1048)
T 1wxr_A           58 GVATLINPQYIASVKHN-GGY----------TNVSFGD----------GENRY---NIVDRNNAPS----LDFHAPRLDK  109 (1048)
T ss_dssp             CCCEEEETTEEEBCTTC-CSC----------CEECCTT----------SCCCE---EEEECCBCSS----SSCBCCEESS
T ss_pred             ceEEEEcCcEEEEeeec-CCC----------ceEEeCC----------CcceE---EEEeeCCCCC----CCeeeeeccc
Confidence            35899999999999992 211          1344443          01133   3478888853    4999999999


Q ss_pred             cccCCCCccceEecCC
Q psy15989        129 DVDYSMYVRPVCLWDD  144 (363)
Q Consensus       129 ~~~~~~~v~picL~~~  144 (363)
                      .|+   -|.||-+...
T Consensus       110 ~VT---EvaP~~~t~~  122 (1048)
T 1wxr_A          110 LVT---EVAPTAVTAQ  122 (1048)
T ss_dssp             CCC---SSCCCCBCSS
T ss_pred             ccc---cccceeeccc
Confidence            887   3778777544

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.60  E-value=0.0015  Score=62.04  Aligned_cols=71  Identities=21%  Similarity=0.160  Sum_probs=43.2

Q ss_pred             eEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEE
Q psy15989         46 SYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ  125 (363)
Q Consensus        46 ~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~  125 (363)
                      .-.-+|.+|++.+|||.+|.+.+        ...+.|.+-          .....+..+-+...|       ..||||||
T Consensus        73 ~s~GSGfiI~dG~IlTN~HVV~~--------a~~i~V~~~----------~dg~~~~A~vv~~D~-------~~DLAvLk  127 (539)
T 4fln_A           73 TSTGSAFMIGDGKLLTNAHCVEH--------DTQVKVKRR----------GDDRKYVAKVLVRGV-------DCDIALLS  127 (539)
T ss_dssp             EEEEEEEEEETTEEEECGGGGTT--------EEEEEEECT----------TCCCCEEEEEEEEET-------TTTEEEEE
T ss_pred             ceEEEEEEEECCEEEEChHHcCC--------CCeEEEEEc----------cCCEEEEEEEEEECC-------CCCEEEEE
Confidence            34578999999999999999964        345666541          011233333333333       35999999


Q ss_pred             eCCcccCCCCccceEec
Q psy15989        126 LSSDVDYSMYVRPVCLW  142 (363)
Q Consensus       126 L~~~~~~~~~v~picL~  142 (363)
                      ++.+-. ...+.|+.+.
T Consensus       128 v~~~~~-~~~~~pl~~g  143 (539)
T 4fln_A          128 VESEDF-WKGAEPLRLG  143 (539)
T ss_dssp             ECCSSS-STTCCCCCBC
T ss_pred             EeCCcC-CcCCceeecC
Confidence            986522 2234455553

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=96.94  E-value=0.00028  Score=51.06  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=29.1

Q ss_pred             ccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        323 VSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       323 ~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .|+.||++.++++++++|++.    |...++++||||+.
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~----~~~~i~~~~iCa~~   37 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKY----WGTKIKDAMICAGA   37 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHH----HGGGCCTTEEEEEC
T ss_pred             cCccceEEEEEECCHHHhhHH----hcCCCCCceEeecC
Confidence            467899999999999999765    33458899999973

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=96.63  E-value=0.0012  Score=53.62  Aligned_cols=63  Identities=11%  Similarity=-0.074  Sum_probs=44.4

Q ss_pred             CCceEEEeecceeecccceEee----eeCCCCCCccccccccCCcEEEEEecCCCCCCccccceEEEeceeecccc
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPV----CLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQC  340 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~pi----cl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~v~ii~~~~C  340 (363)
                      .||||||||++++.+++.|+++    +++.....     ...|+.+.+.||+...   ..-.++.+++++ +..++
T Consensus        53 ~~DiAlikl~~~~~~~~~v~~i~~~~~~~~~~~~-----~~~G~~v~~~G~~~~~---t~G~v~~~~~~v-~~~~~  119 (181)
T 2sga_A           53 NNDYGIIRHSNPAAADGRVYLYNGSYQDITTAGN-----AFVGQAVQRSGSTTGL---RSGSVTGLNATV-NYGSS  119 (181)
T ss_dssp             BSCEEEEEESCGGGCCCEEECSSSCEEECCEECC-----CCTTCEEEEEETTTEE---EEEEEEEEEEEE-ECGGG
T ss_pred             CCCEEEEEccCCCcccceEEecCCcceeeccccc-----CCCCCEEEEeecCCCc---cEEEEEEeEEEE-ECCCC
Confidence            5899999999999999899998    77642221     2568889898887431   123477777774 54444

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=96.33  E-value=0.0064  Score=51.64  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=29.8

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      .+|||||||+     +..++|++|+...       ...|..++++||+..
T Consensus       102 ~~DiAll~l~-----~~~~~~~~l~~~~-------~~~G~~v~v~G~p~g  139 (237)
T 3k6y_A          102 SVDVAILAVP-----HLPPPPLVFAAEP-------AKTGADVVVLGYPGG  139 (237)
T ss_dssp             TTTEEEEECT-----TCCSCCCCBCSSC-------CCTTCEEEEEECGGG
T ss_pred             CCCEEEEEeC-----CCCCCceecCCCC-------CCCCCEEEEEECCCC
Confidence            4799999998     4578999998322       356899999999854

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=96.32  E-value=0.046  Score=43.62  Aligned_cols=31  Identities=16%  Similarity=0.102  Sum_probs=23.0

Q ss_pred             eEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEe
Q psy15989         46 SYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYL   84 (363)
Q Consensus        46 ~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~   84 (363)
                      .-.++|-.|+.+ +||||+|=+.+        .+..+|++
T Consensus        14 ~G~GsgF~i~~~g~vVTA~HVv~~--------~~~~~V~~   45 (198)
T 1mbm_A           14 YGTGSVWTRNNEVVVLTASHVVGR--------ANMATLKI   45 (198)
T ss_dssp             EEEEEEEEETTEEEEEEEHHHHCT--------TCEEEEEE
T ss_pred             CCccceEEECCCeEEEEeeeEEcc--------CceEEEEE
Confidence            456889999977 59999998854        34556665

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=95.95  E-value=0.0045  Score=55.89  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=32.3

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      .+|||||||+.+   .+.++|++|++...      ...|..+++.||+..
T Consensus        99 ~~DlAlLkl~~~---~~~~~~i~l~~s~~------~~~G~~v~~iG~p~g  139 (348)
T 3qo6_A           99 DKDVAVLRIDAP---KNKLRPIPVGVSAD------LLVGQKVFAIGNPFG  139 (348)
T ss_dssp             GGTEEEEECCCC---GGGCCCCCBCCSTT------CCTTCEEEEEECGGG
T ss_pred             cCCEEEEEEcCC---CCCceeEEecCccc------CCCCCEEEEEECCCC
Confidence            479999999987   45688999976432      356899999999864

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=95.49  E-value=0.018  Score=46.88  Aligned_cols=31  Identities=19%  Similarity=0.168  Sum_probs=23.9

Q ss_pred             eEEEEEeeCCceeEEEEEEEe---eCCEEEeeccCccc
Q psy15989         34 HVALYRTEGINLSYVCGGSLV---SVNYVITAAHCVTK   68 (363)
Q Consensus        34 ~v~l~~~~~~~~~~~CgGsLI---s~~~VLTAAhC~~~   68 (363)
                      .+.|+..+    .|+|-|+.+   ...++||||||+..
T Consensus        18 vv~l~~~d----~h~G~g~~V~~~G~~~LlTA~Hv~~~   51 (191)
T 1zyo_A           18 LVAIKSGP----TTIGFGCRTKIDGEDCLLTAHHVWCN   51 (191)
T ss_dssp             EEEEEETT----EEEEEEEEEEC--CEEEEECHHHHTS
T ss_pred             EEEEEeCC----eEEEEEEEEEECCCcEEEEChhhCcC
Confidence            55665532    899999999   56799999999854

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=94.74  E-value=0.017  Score=49.02  Aligned_cols=42  Identities=17%  Similarity=0.059  Sum_probs=32.5

Q ss_pred             CCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        268 YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       268 ~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      ..+|||||||+.++   +.++|++|++...      ...|..+++.||+..
T Consensus       101 ~~~DlAllkl~~~~---~~~~~~~l~~s~~------~~~G~~v~~iG~p~g  142 (239)
T 1l1j_A          101 EELDIAVIKIKASD---KKFPYLEFGDSDK------VKIGEWAIAIGNPLG  142 (239)
T ss_dssp             TTTTEEEEEBCCSS---SCCCCCEECCGGG------CCTTCEEEEEECTTS
T ss_pred             CCCCEEEEEEcCCC---CCCceEEecCccC------CccccEEEEEECCCC
Confidence            36899999999875   5688999975421      246889999999864

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=94.03  E-value=0.035  Score=49.47  Aligned_cols=56  Identities=20%  Similarity=0.167  Sum_probs=39.6

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccceEEEeceeeccccc
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCL  341 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~v~ii~~~~C~  341 (363)
                      .+||||||++.+    ..+.|++|++...      ...|..+++.||+....       +.+..-+++...|.
T Consensus        93 ~~DlAllkl~~~----~~~~~~~l~~~~~------~~~G~~v~~~G~p~~~~-------~~v~~G~vs~~~~~  148 (325)
T 1lcy_A           93 VADIATLRIQTK----EPLPTLPLGRSAD------VRQGEFVVAMGSPFALQ-------NTITSGIVSSAQRP  148 (325)
T ss_dssp             TTTEEEEECCCS----SCCCCCCBCCGGG------CCTTCEEEECCCTTSSS-------SCCEEEEBCSCSCC
T ss_pred             CCCEEEEEEcCC----CCCceEEeccccc------CCCCCEEEEEECCCCCC-------CcEEeEEEeccccc
Confidence            689999999876    3467888875321      35688999999996432       23456677777774

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=93.85  E-value=0.14  Score=43.24  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      .+|||||||+.+.    .+.|+.|++...      ...|..+++.||+..
T Consensus        99 ~~DlAll~l~~~~----~~~~~~l~~~~~------~~~G~~v~~~G~p~~  138 (237)
T 3lgi_A           99 LTDLAVLKINATG----GLPTIPINARRV------PHIGDVVLAIGNPYN  138 (237)
T ss_dssp             TTTEEEEECCCSS----CCCCCCCCTTCC------CCTTBEEEEEECGGG
T ss_pred             CCCEEEEEecCCC----CCceEeccCccc------CCCCCEEEEEECCCC
Confidence            3699999999764    367888875332      356889999999854

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=93.57  E-value=0.037  Score=46.72  Aligned_cols=40  Identities=23%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      .+|||||||+.+    ..+.|+.|++...      ...|..+++.||+..
T Consensus       109 ~~DlAlL~l~~~----~~~~~~~l~~~~~------~~~G~~v~~~G~p~g  148 (231)
T 3tjo_A          109 KADIALIKIDHQ----GKLPVLLLGRSSE------LRPGEFVVAIGSPFS  148 (231)
T ss_dssp             TTTEEEEECCCS----SCCCCCCBCCGGG------CCTTCEEEEEEEEET
T ss_pred             CCCEEEEEecCC----CCCCceecCCcCC------CCCCCEEEEEECCCC
Confidence            479999999976    3467788865332      356889999999853

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=93.16  E-value=0.97  Score=45.16  Aligned_cols=26  Identities=31%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             cCcccccceeEEEE--cCccEEEEEEEE
Q psy15989        208 VCNGDSGGGMVFKI--DSAWYLRGIVSI  233 (363)
Q Consensus       208 ~C~gdsGgpl~~~~--~~~~~l~Gi~s~  233 (363)
                      .-.||||+||+...  .++|+|+|+.+.
T Consensus       213 g~~GDSGSPLFayD~~~~KWvl~Gv~~~  240 (1011)
T 3syj_A          213 GSKGDSGSPMFIYDAEKQKWLINGILRE  240 (1011)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEECC
T ss_pred             CCCCCCCCcceeeEcCCCeEEEEEEeec
Confidence            34699999998876  678999999753

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=92.99  E-value=0.13  Score=41.76  Aligned_cols=42  Identities=21%  Similarity=0.170  Sum_probs=29.3

Q ss_pred             CCceEEEeecceeecccceE-----eeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        269 LGDIALLQLSSDVDYSMYVR-----PVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~-----picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      .+|||||||+.+..++..|+     +++|+....      ...|+.  +..||++
T Consensus        54 ~~DiAlikl~~~~~~~~~v~~~~g~~v~l~~s~~------~~vG~~--v~~~G~~  100 (189)
T 2ea3_A           54 GNDYAFVRTGAGVNLLAQVNNYSGGRVQVAGHTA------APVGSA--VCRSGST  100 (189)
T ss_dssp             BSCEEEEEECTTCEEEEEEECSSSCEEECCBCCC------CCTTCE--EEEEETT
T ss_pred             CCCEEEEEECCCCccccceEecCCceeecCCCcC------CCCCCE--EEEEEeC
Confidence            57999999999988888877     778865322      234543  4567754

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=92.71  E-value=0.091  Score=46.71  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      .+|||||||+.+    ..++|++|++...      ...|..+++.||.
T Consensus        86 ~~DlAllkl~~~----~~~~~~~l~~~~~------~~~G~~v~~~G~p  123 (324)
T 1y8t_A           86 TSDIAVVRVQGV----SGLTPISLGSSSD------LRVGQPVLAIGSP  123 (324)
T ss_dssp             TTTEEEEEECSC----CSCCCCEECCSTT------CCTTCEEEEEECG
T ss_pred             CCCEEEEEECCC----CCCceEEecCccc------CCCCCEEEEEEcC
Confidence            689999999987    4678999976432      2468899999994

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=92.15  E-value=0.73  Score=38.39  Aligned_cols=26  Identities=35%  Similarity=0.509  Sum_probs=21.4

Q ss_pred             ccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        207 NVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       207 ~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      ..-.|+.|+|++...++  .++||+|.+
T Consensus       145 sT~~G~CGlPlVs~~Dg--~IVGiHsl~  170 (241)
T 3mmg_A          145 TTKDGQAGSPLVSIIDG--NILGIHSLT  170 (241)
T ss_dssp             CCCTTCTTCEEEETTTC--CEEEEEEEE
T ss_pred             CCCCCcCCCeEEEcCCC--cEEEEEecc
Confidence            34468999999988777  789999985

>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A

Probab=91.18  E-value=1.9  Score=35.71  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             cCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        208 VCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       208 ~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .=.|+.|.|++...++  .++||.|.+
T Consensus       154 T~~G~CGlPlVs~~Dg--~IVGiHsl~  178 (229)
T 1lvm_A          154 TKDGQCGSPLVSTRDG--FIVGIHSAS  178 (229)
T ss_dssp             CCTTCTTCEEEETTTC--CEEEEEEEE
T ss_pred             CCCCcCCCcEEECCCC--cEEEEEccc
Confidence            3468999999988777  789999985

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=91.16  E-value=2.7  Score=34.10  Aligned_cols=36  Identities=19%  Similarity=-0.002  Sum_probs=21.9

Q ss_pred             CCCcceEEEEEeeCCceeEEEEEEEeeC-CEEEeeccCccc
Q psy15989         29 GQWPWHVALYRTEGINLSYVCGGSLVSV-NYVITAAHCVTK   68 (363)
Q Consensus        29 ~~~Pw~v~l~~~~~~~~~~~CgGsLIs~-~~VLTAAhC~~~   68 (363)
                      +.-|=.|.+.-..    .-..+|--|+. ..||||+|=+.+
T Consensus        16 ~~~~N~v~V~G~~----~GsGt~F~i~g~~~VvTA~HVVg~   52 (213)
T 3fan_A           16 KPSLNTVNVVGSS----MGSGGVFTIDGKIKCVTAAHVLTG   52 (213)
T ss_dssp             SCCTTEEEEESSS----EEEEEEEEETTEEEEEEEGGGSBT
T ss_pred             CCCCCeEEEeecC----CCceEEEEECCcEEEEEeccEeCC
Confidence            3345455554222    34566666663 489999998864

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=91.05  E-value=0.27  Score=43.77  Aligned_cols=40  Identities=23%  Similarity=0.208  Sum_probs=27.9

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      .+|||||||+.+    ..+.|+.|++...      ...|..+++.||+..
T Consensus        92 ~~DlAlL~l~~~----~~~~~~~l~~~~~------~~~G~~v~~~G~p~g  131 (332)
T 3num_A           92 KADIALIKIDHQ----GKLPVLLLGRSSE------LRPGEFVVAIGSPFS  131 (332)
T ss_dssp             TTTEEEEEECCS----SCCCCCCBCCTTS------CCTTCEEEEECC---
T ss_pred             CCCeEEEEEcCC----CCCceeeecCccc------CCCCCEEEEEECCCC
Confidence            369999999986    3467788865432      356889999999864

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=87.18  E-value=0.48  Score=38.29  Aligned_cols=43  Identities=14%  Similarity=0.044  Sum_probs=28.2

Q ss_pred             CCceEEEeecceeecccceEe-----eeeCCCCCCccccccccCCcEEEEEecC
Q psy15989        269 LGDIALLQLSSDVDYSMYVRP-----VCLWDDSTAPLQLSAVEGRDGTVIGWGY  317 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~p-----icl~~~~~~~~~~~~~~~~~~~v~GWG~  317 (363)
                      .+|||||||+.++.+...++.     +.+.....      ...|+.+..+||..
T Consensus        60 ~~DiAlikl~~~~~~~~~v~~~~g~~~~i~~~~~------~~~G~~v~~~G~~~  107 (187)
T 1hpg_A           60 TNDYGIVRYTDGSSPAGTVDLYNGSTQDISSAAN------AVVGQAIKKSGSTT  107 (187)
T ss_dssp             BSCEEEEEECSSCCCCSEEECSSSCEEECCEECC------CCTTCEEEEEETTT
T ss_pred             CCCEEEEEeCCCCCcCceEEecCCceeeeccccC------CCCCCEEEEEEcCC
Confidence            479999999987776554432     33322111      35688888999874

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=86.04  E-value=0.5  Score=32.00  Aligned_cols=18  Identities=28%  Similarity=0.222  Sum_probs=15.0

Q ss_pred             ceEEEeeeEEEEcCCCCC
Q psy15989        248 YVVFTDVKRVHIYPTFNS  265 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~  265 (363)
                      ..+..+|.++++||+|+.
T Consensus        62 ~~~~~~v~~i~~Hp~y~~   79 (80)
T 2pka_A           62 TAQFFGVTADFPHPGFNL   79 (80)
T ss_dssp             TCEEEEEEEEEECTTTTT
T ss_pred             CcEEEEEEEEEECcCCCC
Confidence            346778999999999975

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=85.64  E-value=0.52  Score=41.62  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=29.1

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      .+||||||++.+    ..+.|++|++...      ...|..+++.||.
T Consensus        88 ~~DlAllk~~~~----~~~~~~~l~~~~~------~~~G~~v~~~G~p  125 (318)
T 1te0_A           88 LTDLAVLIIKAT----GGLPTIPINARRV------PHIGDVVLAIGNP  125 (318)
T ss_dssp             TTTEEEEECCCS----SCCCCCCCCTTCC------CCTTCEEEEECCC
T ss_pred             CceEEEEEEeCC----CCCceEEeeCccC------CCCCCEEEEEEcC
Confidence            689999999876    4578888875322      2568899999964

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=82.60  E-value=0.76  Score=38.91  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=27.4

Q ss_pred             CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        269 LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       269 ~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      .+|||||||+.+    ..+.|+.|++...      ...|..+++.||.
T Consensus       110 ~~DlAlLkv~~~----~~~~~~~l~~s~~------~~~G~~v~aiG~P  147 (245)
T 3sti_A          110 QSDIALLQIQNP----SKLTQIAIADSDK------LRVGDFAVAVGNP  147 (245)
T ss_dssp             TTTEEEEEESSC----CSCCCCCBCCGGG------CCTTBEEEEEECG
T ss_pred             CCCEEEEEeccC----CCCceeeecCcCC------CCCCCEEEEEECC
Confidence            479999999864    3456777764321      3568899999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	4e-27
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	7e-07
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	6e-26
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	7e-04
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	1e-24
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	2e-24
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	3e-05
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	3e-24
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	2e-04
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	4e-24
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	2e-23
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	3e-23
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	6e-23
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	2e-22
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	6e-04
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	4e-22
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	3e-04
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	5e-22
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	1e-21
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	3e-06
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	2e-21
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	2e-21
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	6e-04
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	2e-21
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	4e-21
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	7e-21
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	7e-21
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	0.001
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	8e-21
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	5e-04
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	8e-21
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	3e-20
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	3e-20
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	4e-20
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	4e-20
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	5e-20
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	6e-20
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	8e-20
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	8e-05
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	9e-20
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	3e-19
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	3e-19
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	4e-05
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	3e-19
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	5e-19
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	8e-19
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	2e-18
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	5e-18
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	6e-18
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	1e-17
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	0.001
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	5e-17
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	6e-17
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	1e-16
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	2e-16
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	2e-16
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	2e-16
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	6e-16
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	7e-16
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	1e-15
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	1e-15
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	1e-14
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	2e-14
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	3e-14
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	4e-14
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	9e-14
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	2e-13
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	9e-12
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	1e-11
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	4e-11
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	1e-09
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	5e-07
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	4e-05
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	0.003

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  105 bits (261), Expect = 4e-27
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 10/232 (4%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G++P+ ++   T      + CG S+ + NY ITA HCV    Y+ P       +
Sbjct: 4   GTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSG-----L 58

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +         +EG  Q   V ++ ++  F+ +    DI+LL+LS  + ++  V P+ L 
Sbjct: 59  QIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALP 118

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
           +          V G    +       V +  +   +              +       V 
Sbjct: 119 EQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVP 178

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
               + C GDSGG +      + YL GIVS      G       +  V+T+V
Sbjct: 179 EGGKDSCQGDSGGPLAASDTGSTYLAGIVSW-----GYGCARPGYPGVYTEV 225

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 47.3 bits (111), Expect = 7e-07
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 243 CDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
              +       V ++ ++  F+ +    DI+LL+LS  + ++  V P+ L +        
Sbjct: 68  SVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATG- 126

Query: 303 SAVEGRDGTVIGWGYD-ENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFC 358
                 D  V GWG   E     + L+   +P+VS + C      + +    D   C
Sbjct: 127 ------DVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDC---RADYGADEILDSMIC 174

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (253), Expect = 6e-26
 Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 18/235 (7%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  +  G WPW VALY  +      VCG SLVS +++++AAHCV  +  +       L  
Sbjct: 4   GSDSREGAWPWVVALYFDD----QQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLG- 58

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                H         ++ + + ++ I P +N      DIA++ L   V+Y+ Y++P+CL 
Sbjct: 59  ----LHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLP 114

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
           +++            +        G    +     +  + +    +       T++ V  
Sbjct: 115 EENQVFPPGRICS-IAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCA 173

Query: 203 TDVAN---VCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
              A     C GDSGG ++ + ++ W L G+ S      G +        V+  V
Sbjct: 174 GYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSF-----GYQCALPNRPGVYARV 223

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 243 CDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
             T   +    + ++ I P +N      DIA++ L   V+Y+ Y++P+CL +++      
Sbjct: 64  NLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVF--- 120

Query: 303 SAVEGRDGTVIGWGY-DENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
               GR  ++ GWG        ++ L+ A +P++S+++C    P++      +   CAG+
Sbjct: 121 --PPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNIT---ENMVCAGY 175

Query: 362 RN 363
             
Sbjct: 176 EA 177

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.3 bits (243), Expect = 2e-24
 Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 15/250 (6%)

Query: 8   CGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
           CG  ++       V  G+      WPW ++L         + CGG+L++ N+V+TAAHC+
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60

Query: 67  TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQL 126
           +     +              +  +  DE G     V  + ++  +NS     DIAL++L
Sbjct: 61  SNTLTYRVA---------LGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKL 111

Query: 127 SSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV 186
           +  V+    ++  CL  + +   Q      T      + G +  ++          +   
Sbjct: 112 AETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCS 171

Query: 187 ARDGL--RVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 244
            RD     V +T        V + CNGDSGG +  + D  W +RGIVS      GL    
Sbjct: 172 QRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFG---SGLSCNT 228

Query: 245 TKHYVVFTDV 254
            K   VFT V
Sbjct: 229 FKKPTVFTRV 238

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 243 CDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
            + +   ++  V  + ++  +NS     DIAL++L+  V+    ++  CL  + +   Q 
Sbjct: 77  VEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQD 136

Query: 303 SAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
                            N  ++ EL+  + P+V +  C  S   ++     +   CAG  
Sbjct: 137 YPCFVTG----WGRLYTNGPIAAELQQGLQPVVDYATC--SQRDWWGTTVKETMVCAGGD 190

Query: 363 N 363
            
Sbjct: 191 G 191

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.6 bits (244), Expect = 3e-24
 Identities = 43/267 (16%), Positives = 77/267 (28%), Gaps = 41/267 (15%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
            + T   + PW   +           C G++VS  +V+TAAHC T           ++ +
Sbjct: 8   RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD-----KEHSIKV 62

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +G   +     E  + +                Y  D+AL++L + + Y   +RP+CL 
Sbjct: 63  SVGG-EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 121

Query: 143 DDSTAPLQLSAVEGTSV------CNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDT 196
                   L     T+                +F  +    L          D    C+ 
Sbjct: 122 CTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER 181

Query: 197 KHYVVF------------------------TDVANVCNGDSGGGMVFKIDSAWYLRGIVS 232
                                             N C GDSGG ++    S +   G++S
Sbjct: 182 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVIS 241

Query: 233 ITVA-----RDGLRVCDTKHYVVFTDV 254
             V      +   +           ++
Sbjct: 242 WGVVDVCKNQKRQKQVPAHARDFHINL 268

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 156 GTSVCNGDSGGGMVFKIDSAWYLRGIVSITVA-----RDGLRVCDTKHYVVFTDVAN 207
             + C GDSGG ++    S +   G++S  V      +   +           ++  
Sbjct: 214 DPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQ 270

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 4e-24
 Identities = 64/240 (26%), Positives = 98/240 (40%), Gaps = 23/240 (9%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G+WPW V+L+        ++CG SL+S N++++AAHC       +  D      
Sbjct: 4   GTDADEGEWPWQVSLHALGQ---GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           +LG + Q Q S   GVQ +++KR+  +P FN   +  DIALL+L    +YS  VRP+CL 
Sbjct: 61  FLGLHDQSQRSAP-GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLP 119

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARD------GLRVCDT 196
           D S                    G   +    A  L+      + +         ++   
Sbjct: 120 DASHVF------PAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPR 173

Query: 197 KHYVVFTD-VANVCNGDSGGGMVFK-IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
              V F     + C GDSGG +     D   +  G+VS      G          V+T +
Sbjct: 174 MMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSW-----GDGCAQRNKPGVYTRL 228

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (236), Expect = 2e-23
 Identities = 59/242 (24%), Positives = 94/242 (38%), Gaps = 28/242 (11%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+ T RG  PW V L  ++       CG  L+  ++V+TAAHC+ +              
Sbjct: 4   GKMTRRGDSPWQVVLLDSKK---KLACGAVLIHPSWVLTAAHCMDESKKLLV-------- 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG+Y   ++       +  +K V ++P ++ S    DIALL L+     S  + P+CL 
Sbjct: 53  RLGEYDLRRWEK--WELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLP 110

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
           D   A  +L+     ++  G        K         +  I +       C      + 
Sbjct: 111 DSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMV 170

Query: 203 TDV----------ANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT 252
           ++            + C GDSGG MV      W+L G+VS      G       +Y V+T
Sbjct: 171 SENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSW-----GEGCGLLHNYGVYT 225

Query: 253 DV 254
            V
Sbjct: 226 KV 227

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (234), Expect = 3e-23
 Identities = 60/242 (24%), Positives = 92/242 (38%), Gaps = 25/242 (10%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+  R +WPW V+L R  G    + CGGSL+   +V+TAAHCV     D         +
Sbjct: 4   GQEAPRSKWPWQVSL-RVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKD---------L 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
              +    +       Q   V R+ ++P F ++    DIALL+L   V  S +V  V L 
Sbjct: 54  AALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLP 113

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGM----------VFKIDSAWYLRGIVSITVARDGLR 192
             S           T   + D+   +          V  +++              D +R
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173

Query: 193 VCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT 252
           +             + C GDSGG +V K++  W   G+VS      G          ++T
Sbjct: 174 IVRDDMLCAGNTRRDSCQGDSGGPLVCKVNGTWLQAGVVSW-----GEGCAQPNRPGIYT 228

Query: 253 DV 254
            V
Sbjct: 229 RV 230

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (231), Expect = 6e-23
 Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+    GQ+PW V L       +   CGGS+V+  +++TAAHCV             + +
Sbjct: 4   GEDAKPGQFPWQVVLNG----KVDAFCGGSIVNEKWIVTAAHCVE--------TGVKITV 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
             G+++  +       +N      H       + Y  DIALL+L   +  + YV P+C+ 
Sbjct: 52  VAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIA 111

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKID--SAWYLRGIVSITVARDGLRVCDTKHYV 200
           D     + L    G     G         +            +  +      + +     
Sbjct: 112 DKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCA 171

Query: 201 VFTD-VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
            F +   + C GDSGG  V +++   +L GI+S      G        Y ++T V
Sbjct: 172 GFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISW-----GEECAMKGKYGIYTKV 221

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 2e-22
 Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 33/243 (13%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G  + RG+WPW V L+ T      ++CGGS++   +++TAAHC       K +   + ++
Sbjct: 4   GTASVRGEWPWQVTLHTT-SPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGIL 62

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
              +  +             V+ + I+  +  +    DIALL+L + V+Y+   RP+CL 
Sbjct: 63  NQSEIKEDT-------SFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLP 115

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY--- 199
                 +         +       G  ++         +    +       C  ++    
Sbjct: 116 SKGDRNV---------IYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHK 166

Query: 200 --------VVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 251
                          + C GDSGG +  K +  W+L GI S      G      +   V+
Sbjct: 167 ITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSW-----GEGCAQRERPGVY 221

Query: 252 TDV 254
           T+V
Sbjct: 222 TNV 224

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 243 CDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
            + K    F  V+ + I+  +  +    DIALL+L + V+Y+   RP+CL       +  
Sbjct: 65  SEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIY 124

Query: 303 SAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR 362
           +                 D++   L+ A +P+V++++C     ++     + +  CAG+R
Sbjct: 125 T----DCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEEC---QKRYRGHKITHKMICAGYR 177

Query: 363 N 363
            
Sbjct: 178 E 178

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 4e-22
 Identities = 58/239 (24%), Positives = 88/239 (36%), Gaps = 18/239 (7%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+ T+ G+WPW V+L      + +++CGGSL+S ++V+TAAHC  ++  ++ +    +  
Sbjct: 4   GRDTSLGRWPWQVSLRY----DGAHLCGGSLLSGDWVLTAAHCFPER--NRVLSRWRVFA 57

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                        G            +   NS     DIAL+ LSS +  + Y++PVCL 
Sbjct: 58  GAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLP 117

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
               A +       T   N    G     +  A        +    D             
Sbjct: 118 AAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCA 177

Query: 203 TDVAN---VCNGDSGGGMVFKI----DSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
                    C GDSGG  V +        W L GIVS      G      +   V+T V
Sbjct: 178 GYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSW-----GTGCALAQKPGVYTKV 231

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 258 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIG-WG 316
             +   NS     DIAL+ LSS +  + Y++PVCL     A      V+G+  TV G   
Sbjct: 82  LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQAL-----VDGKICTVTGWGN 136

Query: 317 YDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
                + +  L+ A +PI+S+  C  +   F+      + FCAG+  
Sbjct: 137 TQYYGQQAGVLQEARVPIISNDVC--NGADFYGNQIKPKMFCAGYPE 181

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 91.4 bits (225), Expect = 5e-22
 Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 13/234 (5%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +  R  WP  ++L    G + ++ CGG+L+  N+V+TAAHCV ++         T  +
Sbjct: 4   GTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL--------TFRV 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +G+++ +Q +        Q   VH Y   +      DIALL+L+  V  + YV+   L 
Sbjct: 56  VVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSA--WYLRGIVSITVARDGLRVCDTKHYV 200
              T     S    T      + G +   +  A    +   +  + +  G  V ++    
Sbjct: 116 RAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCA 175

Query: 201 VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
               V + C GDSGG +   ++  + + G+ S       L    T+   VFT V
Sbjct: 176 GGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVS---RLGCNVTRKPTVFTRV 226

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 90.0 bits (222), Expect = 1e-21
 Identities = 53/239 (22%), Positives = 84/239 (35%), Gaps = 41/239 (17%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P  V+L         + CGGSLV+ N+V++AAHC   +   +         
Sbjct: 4   GYECKAYSQPHQVSLNSG-----YHFCGGSLVNENWVVSAAHCYKSRVEVRL-------- 50

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                  +    EG  Q     RV  +P ++S N   DI L++LS     + YV+PV L 
Sbjct: 51  ----GEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                   +  V G         G  +     +  L+ +    ++               
Sbjct: 107 TSCAPAGTMCTVSGW--------GNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNA 158

Query: 203 TDVA-------NVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
              A       + C GDSGG +V        L+G+VS      G    +  +  V+  V
Sbjct: 159 MFCAGYLEGGKDSCQGDSGGPVVCN----GELQGVVSW-----GYGCAEPGNPGVYAKV 208

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 10/119 (8%)

Query: 245 TKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSA 304
           T+    F    RV  +P ++S N   DI L++LS     + YV+PV L         +  
Sbjct: 58  TEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCT 117

Query: 305 VEGRDGTVIGWGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFRN 363
           V G            +   S +L+   +PI+S+  C       +    ++  FCAG+  
Sbjct: 118 VSGW------GNTMSSTADSNKLQCLNIPILSYSDCN----NSYPGMITNAMFCAGYLE 166

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.4 bits (220), Expect = 2e-21
 Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 21/228 (9%)

Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
            PWHVA+YR       Y CGG L+  N+V+TAAHC   K Y   +  +  +         
Sbjct: 3   QPWHVAVYRFN----KYQCGGVLLDRNWVLTAAHCYNDK-YQVWLGKNNFLEDEPSDQHR 57

Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQ 150
             S      +  +  ++ +      +Y  D+ LL+LS   D +  V+P+ L  +      
Sbjct: 58  LVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGS 117

Query: 151 LSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV---AN 207
                G       +     +  D       ++          +  T   +   ++   + 
Sbjct: 118 TCLASG---WGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSY 174

Query: 208 VCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC-DTKHYVVFTDV 254
            C  DSGG ++        L+GI S      G   C +     V+T +
Sbjct: 175 TCEHDSGGPLICD----GILQGITSW-----GPEPCGEPTEPSVYTKL 213

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 16/133 (12%), Positives = 42/133 (31%), Gaps = 5/133 (3%)

Query: 218 VFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQL 277
                  W  +         D  R+          ++  ++ +      +Y  D+ LL+L
Sbjct: 34  YNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRL 93

Query: 278 SSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIVSH 337
           S   D +  V+P+ L  +           G              +  ++L+   + ++ +
Sbjct: 94  SKPADITDVVKPITLPTEEPKLGSTCLASGWG-----STTPIKFKYPDDLQCVNLKLLPN 148

Query: 338 QQCLWSNPQFFSQ 350
           + C  ++    + 
Sbjct: 149 EDCDKAHEMKVTD 161

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (220), Expect = 2e-21
 Identities = 47/228 (20%), Positives = 79/228 (34%), Gaps = 15/228 (6%)

Query: 31  WPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQH 90
           W W V+L   +     + CGGSL++ ++V+TA HC++         S T  + LG+Y + 
Sbjct: 2   WSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--------TSRTYQVVLGEYDRS 53

Query: 91  QFSDEGGVQNKQVKRVHIYPTFNSSNYLGD--IALLQLSSDVDYSMYVRPVCLWDDSTAP 148
                  V       + ++P +NS+       IAL++LS        V+   L       
Sbjct: 54  VLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDIL 113

Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAW--YLRGIVSITVARDGLRVCDTKHYVVFTDVA 206
              +    +      +GG +  K+  A    +           G+ V  T         +
Sbjct: 114 PNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGDTRS 173

Query: 207 NVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
                  G       D +W + G+ S             K   VFT V
Sbjct: 174 GCNGDSGGPLNCPAADGSWQVHGVTSFVS---AFGCNTIKKPTVFTRV 218

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (218), Expect = 4e-21
 Identities = 56/236 (23%), Positives = 90/236 (38%), Gaps = 22/236 (9%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQ+   G+ PW   L   E       CGG+++S  Y++TAAHC+ +    K         
Sbjct: 4   GQECKDGECPWQALLINEEN---EGFCGGTILSEFYILTAAHCLYQAKRFKVRV------ 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                 ++   +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P CL 
Sbjct: 55  ----GDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110

Query: 143 DDSTA--PLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGI--VSITVARDGLRVCDTKH 198
           +   A   L        S        G          +  +   S  ++   +   +   
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFC 170

Query: 199 YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
               T   + C GDSGG  V +    +++ GIVS      G        Y ++T V
Sbjct: 171 AGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSW-----GEGCARKGKYGIYTKV 221

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (218), Expect = 7e-21
 Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 25/241 (10%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+   +G+ PW V L      N + +CGG+L++  +V++AAHC      DK  +   L+ 
Sbjct: 4   GKVCPKGECPWQVLLLV----NGAQLCGGTLINTIWVVSAAHCF-----DKIKNWRNLIA 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG++   +   +G  Q+++V +V I  T+       DIALL+L   V  + +V P+CL 
Sbjct: 55  VLGEHDLSEH--DGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLP 112

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSIT---------VARDGLRV 193
           + + +   L+ V  + V                  L     +T         V       
Sbjct: 113 ERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNIT 172

Query: 194 CDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTD 253
                        + C GDSGG         WYL GIVS      G       H+ V+T 
Sbjct: 173 EYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSW-----GQGCATVGHFGVYTR 227

Query: 254 V 254
           V
Sbjct: 228 V 228

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.9 bits (216), Expect = 8e-21
 Identities = 48/234 (20%), Positives = 72/234 (30%), Gaps = 25/234 (10%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+   L   +  + S  CGG L+  ++V+TAAHC   K            I
Sbjct: 4   GHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGSK------------I 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +     +    E   Q   V ++  +P +NS     DI LL+L S    S  V+P+ L 
Sbjct: 52  QVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLP 111

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSA--WYLRGIVSITVARDGLRVCDTKHYV 200
             +                    G     +              +  ++     +     
Sbjct: 112 RRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAG 171

Query: 201 VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
                     GDSGG +V K        GIVS           D      FT V
Sbjct: 172 DPKIKRASFRGDSGGPLVCK----KVAAGIVSYG-------QNDGSTPRAFTKV 214

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 241 RVCDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPL 300
            + + +       V ++  +P +NS     DI LL+L S    S  V+P+ L   +    
Sbjct: 59  NIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKV- 117

Query: 301 QLSAVEGRDGTVIG-WGYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTS 353
                 G    V G        + S+ L+   + +   Q+C      +F +   
Sbjct: 118 ----KPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANE 167

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.8 bits (216), Expect = 8e-21
 Identities = 54/234 (23%), Positives = 82/234 (35%), Gaps = 30/234 (12%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G        P+ V+L         + CGGSL++  +V++AAHC   +   +         
Sbjct: 4   GYTCQENSVPYQVSLNSG-----YHFCGGSLINDQWVVSAAHCYKSRIQVRL-------- 50

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                  +    EG  Q     ++  +P F+   Y  DI L++LSS V  +  V  V L 
Sbjct: 51  ----GEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP 106

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV-ARDGLRVCDTKHYVV 201
                      + G    N  S G     +        +      A     + D    V 
Sbjct: 107 SSCAPAGTQCLISGW--GNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFIITDNMVCVG 164

Query: 202 FTDVA-NVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           F +   + C GDSGG +V        L+GIVS      G       +  V+T V
Sbjct: 165 FLEGGKDACQGDSGGPVVCN----GELQGIVSW-----GYGCALPDNPGVYTKV 209

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 86.3 bits (212), Expect = 3e-20
 Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 26/234 (11%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +    +  + VA + T G    + CGG+L++  +V+TAAHC +     +         
Sbjct: 4   GNECDINEHRFLVAFFNTTG----FFCGGTLINPEWVVTAAHCDSTDFQMQLG------- 52

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                H  +  +E        ++       N+     DI L++L   +  S ++ P+ L 
Sbjct: 53  ----VHSKKVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLP 108

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAW-YLRGIVSITVARDGLRVCDTKHYVV 201
               +   +  + G                 +    L   V      + L    T    +
Sbjct: 109 SSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGI 168

Query: 202 FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV-VFTDV 254
                + C GDSGG ++         +GIVS      G   C       ++T+V
Sbjct: 169 VQGGKDTCGGDSGGPLICN----GQFQGIVSY-----GAHPCGQGPKPGIYTNV 213

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 86.3 bits (212), Expect = 3e-20
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 21/235 (8%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G K  +   PW VA+         Y+CGG L+  ++VITAAHC +   Y   +  + L  
Sbjct: 4   GYKCEKNSQPWQVAVIN------EYLCGGVLIDPSWVITAAHCYSNN-YQVLLGRNNLFK 56

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                 +          +     V         ++  D+ LL LS   D +  V+ + L 
Sbjct: 57  DEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLP 116

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                        G    + +    +V        +  ++S     +  +   T   +  
Sbjct: 117 TKEPKVGSTCLASGW--GSTNPSEMVVSHDLQCVNIH-LLSNEKCIETYKDNVTDVMLCA 173

Query: 203 TDVAN---VCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
            ++      C GDSGG ++        L+GI S             K   ++  +
Sbjct: 174 GEMEGGKDTCAGDSGGPLICD----GVLQGITSGGAT----PCAKPKTPAIYAKL 220

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 85.5 bits (210), Expect = 4e-20
 Identities = 50/232 (21%), Positives = 77/232 (33%), Gaps = 23/232 (9%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G ++     P+   L       L  +CGG L+S  +V+TAAHC  ++            +
Sbjct: 4   GVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREIT----------V 53

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG +       E   Q  +V++  I+ ++NS   L DI LL+L   V+ +  V  V L 
Sbjct: 54  ILGAHDVR--KRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLP 111

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
             S      +                 + +             V                
Sbjct: 112 SPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSP 171

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           T +     GDSGG ++          GIVS           D K   +FT V
Sbjct: 172 TTLRAAFMGDSGGPLLCA----GVAHGIVSYG-------HPDAKPPAIFTRV 212

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 85.9 bits (211), Expect = 4e-20
 Identities = 46/232 (19%), Positives = 74/232 (31%), Gaps = 13/232 (5%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +  +   PW VA+Y        + CGG LV   +V+TAAHC++          +    
Sbjct: 4   GWECEKHSKPWQVAVYH----QGHFQCGGVLVHPQWVLTAAHCMSDDYQIWLGRHNLSKD 59

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                  HQ SD        +  +         +   D+ LL+L+     +  V+ + L 
Sbjct: 60  E-DTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLP 118

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                        G  + +  +  G          L+       A               
Sbjct: 119 TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHR 178

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
            D  ++C GDSGG ++         +GI S   +       D     VFT V
Sbjct: 179 DDSGSICLGDSGGALICD----GVFQGITSWGYS----ECADFNDNFVFTKV 222

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (208), Expect = 8e-20
 Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 42/240 (17%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G    +   P+  ALY     +   +CGG L+   +V+TAAHC              L +
Sbjct: 4   GGPCDKTSHPYQAALYT----SGHLLCGGVLIHPLWVLTAAHCKK----------PNLQV 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           +LGK++  Q   E   +   V R  I+P ++++++  DI LL+L+     S  ++P+ L 
Sbjct: 50  FLGKHNLRQ--RESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLE 107

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARD-------GLRVCD 195
            D +A      +          G G     D    ++      V+R+       G    +
Sbjct: 108 RDCSANTTSCHI---------LGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQN 158

Query: 196 TKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDV 254
                      + C GDSGG +V       +LRG+VS      G   C +K    V+T+V
Sbjct: 159 MLCAGDEKYGKDSCQGDSGGPLVCG----DHLRGLVSW-----GNIPCGSKEKPGVYTNV 209

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 256 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGW 315
           R  I+P ++++++  DI LL+L+     S  ++P+ L  D +A             ++GW
Sbjct: 70  RAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTT-------SCHILGW 122

Query: 316 GYDENDRVSEELKMAIMPIVSHQQCLWSNPQFFSQ 350
           G   +    + ++ A + +VS ++C  + P   +Q
Sbjct: 123 GKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQ 157

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 84.9 bits (208), Expect = 9e-20
 Identities = 50/239 (20%), Positives = 87/239 (36%), Gaps = 24/239 (10%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+      WPW ++L    G +  + CGGSL+   +V+TAAHCV      +         
Sbjct: 4   GRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWRV-------- 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG+++ +    +  +       +H     +      DIALL+L++    +  V+   L 
Sbjct: 56  VLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAAL- 114

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARD-------GLRVCD 195
                P     +   + C     G        +  L+     +V                
Sbjct: 115 -----PPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVK 169

Query: 196 TKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           T          + CNGDSGG +  +++ ++Y+ G+ S            +K   VFT V
Sbjct: 170 TTMVCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVS---SSGCNASKKPTVFTRV 225

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 3e-19
 Identities = 58/251 (23%), Positives = 84/251 (33%), Gaps = 25/251 (9%)

Query: 8   CG--TVVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHC 65
           CG   V   K    V  G       WPW V+L    G    + CGG+L+S  +V+TAAHC
Sbjct: 4   CGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFG---MHFCGGTLISPEWVLTAAHC 60

Query: 66  VTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQ 125
           + K P                 ++        V  +   +              DIALL+
Sbjct: 61  LEKSPRP-------------SSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDIALLK 107

Query: 126 LSSDVDYSMYVRPVCLWDD--STAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVS 183
           LSS    +  V P CL       A      + G     G  G G++ +         + +
Sbjct: 108 LSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLMEAQLPVIENKVCN 167

Query: 184 ITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC 243
                +G                + C GDSGG +V      + L+G+ S      GL   
Sbjct: 168 RYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSW-----GLGCA 222

Query: 244 DTKHYVVFTDV 254
                 V+  V
Sbjct: 223 RPNKPGVYVRV 233

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 3e-19
 Identities = 44/242 (18%), Positives = 79/242 (32%), Gaps = 33/242 (13%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G    +   PW VA+Y  +     ++CGG L+  N+V+TAAHC   + Y+  +  + L  
Sbjct: 4   GFNCEKNSQPWQVAVYYQK----EHICGGVLLDRNWVLTAAHCYVDQ-YEVWLGKNKLFQ 58

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                     S         +  + +      +++  D+ LL+LS   D +  V+P+ L 
Sbjct: 59  EEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALP 118

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                P                 G              +  + +       C   +    
Sbjct: 119 TKEPKPGSKCLA----------SGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKV 168

Query: 203 TDV----------ANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT 252
           TDV           + C  DSGG ++        L+G  S                 ++T
Sbjct: 169 TDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTSYGPV----PCGKPGVPAIYT 220

Query: 253 DV 254
           ++
Sbjct: 221 NL 222

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 82.8 bits (203), Expect = 5e-19
 Identities = 52/238 (21%), Positives = 84/238 (35%), Gaps = 34/238 (14%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G     G+ PW   L   E       CGG+++S  Y++TAAHC+ +    K         
Sbjct: 4   GYNCKDGEVPWQALLINEEN---EGFCGGTILSEFYILTAAHCLYQAKRFKVRV------ 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                 ++   +EGG    +V+ V  +  F    Y  DIA+L+L + + + M V P  L 
Sbjct: 55  ----GDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP 110

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
               A      + G        G       D    L+ + +  +++     C+  +    
Sbjct: 111 TAPPATGTKCLISGW-------GNTASSGADYPDELQCLDAPVLSQA---KCEASYPGKI 160

Query: 203 TDVANVCNGDSGGGMVFKIDSA------WYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           T          GG    + DS         L+G+VS      G          V+T V
Sbjct: 161 TSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSW-----GDGCAQKNKPGVYTKV 213

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.0 bits (201), Expect = 8e-19
 Identities = 49/239 (20%), Positives = 83/239 (34%), Gaps = 36/239 (15%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++      PW  AL++ E      +CGG LV   +V+TAAHC  +K   +  D      
Sbjct: 4   GRECIPHSQPWQAALFQGE----RLICGGVLVGDRWVLTAAHCKKQKYSVRLGDHSLQSR 59

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
              +               Q  +   Y   N  ++  DI L++L +  +    V+PV L 
Sbjct: 60  DQPEQEIQV---------AQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLA 110

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARD------GLRVCDT 196
           +      Q   + G                +    L        +++        ++ + 
Sbjct: 111 NLCPKVGQKCIISGWGTVTSPQE-------NFPNTLNCAEVKIYSQNKCERAYPGKITEG 163

Query: 197 KHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDV 254
                 ++ A+ C GDSGG +V        L+GI S      G   C       V+T +
Sbjct: 164 MVCAGSSNGADTCQGDSGGPLVCD----GMLQGITSW-----GSDPCGKPEKPGVYTKI 213

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 81.0 bits (198), Expect = 2e-18
 Identities = 53/235 (22%), Positives = 81/235 (34%), Gaps = 14/235 (5%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+      WPW V+L         + CGG+LV  ++V+TAAHC++     + V       
Sbjct: 4   GEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYRVVLGR---- 59

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
               +                  VH     N  +   DIALL+L+S V  +  ++  CL 
Sbjct: 60  ----HSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLP 115

Query: 143 DDST--APLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV 200
              T      +  V G      +     + +      +           G  V       
Sbjct: 116 AAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICA 175

Query: 201 VFTDVANVCNGDSGGGMVFK-IDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
               + + CNGDSGG +  +  +  W + GIVS       L         VFT V
Sbjct: 176 GGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFG---SSLGCNYYHKPSVFTRV 227

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 80.3 bits (196), Expect = 5e-18
 Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 13/236 (5%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   + G++PW ++  R  G + S+ CG SL+S    ++A+HCV     +          
Sbjct: 4   GTNASPGEFPWQLSQQRQSG-SWSHSCGASLLSSTSALSASHCVDGVLPNNI-------R 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +    Q   +      N     +H      +++Y  DIA+L L++ +     ++   L 
Sbjct: 56  VIAGLWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLP 115

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSA----WYLRGIVSITVARDGLRVCDTKH 198
            ++      +    +     D    +   +  +           +  V   G  + D   
Sbjct: 116 ANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHI 175

Query: 199 YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
            V              GG +   D    + G+ S  V+  GL  C   +  V+T V
Sbjct: 176 CVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSWVVS-SGLGACLPDYPSVYTRV 230

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 79.7 bits (195), Expect = 6e-18
 Identities = 49/232 (21%), Positives = 78/232 (33%), Gaps = 24/232 (10%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +     WP   AL+  +     Y CGGSL+S  +++TAAHC+    +   V       
Sbjct: 4   GVEAVPNSWPHQAALFIDD----MYFCGGSLISPEWILTAAHCMDGAGFVDVVLGAH--- 56

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                  +   DE      Q     ++  +NS     DIA+++L   V  +  +  V L 
Sbjct: 57  -------NIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP 109

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                   +    G            +  +     +  + +         V D    +  
Sbjct: 110 STDVGVGTVVTPTGW--GLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDS 167

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           T     CNGDSGG + +         GI S   A      C+  +   FT V
Sbjct: 168 TGGKGTCNGDSGGPLNYN----GLTYGITSFGAAAG----CEAGYPDAFTRV 211

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (193), Expect = 1e-17
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 45/251 (17%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+ V L     ++   +C G+L++ ++V+TAAHC   K             
Sbjct: 4   GNEVTPHSRPYMVLLS----LDRKTICAGALIAKDWVLTAAHCNLNKRSQVI-------- 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                      +E   Q   VK+   YP ++ +   GD+ LLQL+     + YV  + L 
Sbjct: 52  ---LGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLP 108

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                          ++C     G        +  LR    + +     +VC+ +++  F
Sbjct: 109 KKGDDVKP------GTMCQVAGWGRTHNSASWSDTLR---EVEITIIDRKVCNDRNHYNF 159

Query: 203 TDV--------------ANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY 248
             V               + CNGDSG  ++ +       RG+ S  +     +  D +  
Sbjct: 160 NPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE----GVFRGVTSFGLEN---KCGDPRGP 212

Query: 249 VVFTDVKRVHI 259
            V+  + + H+
Sbjct: 213 GVYILLSKKHL 223

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 243 CDTKHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQL 302
              +       VK+   YP ++ +   GD+ LLQL+     + YV  + L          
Sbjct: 58  TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKP- 116

Query: 303 SAVEGRDGTVIGWGYDENDR-VSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF 361
               G    V GWG   N    S+ L+   + I+  + C   N   F+        CAG 
Sbjct: 117 ----GTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGS 172

Query: 362 RN 363
             
Sbjct: 173 LR 174

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (188), Expect = 5e-17
 Identities = 46/234 (19%), Positives = 66/234 (28%), Gaps = 26/234 (11%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+   L   +       CGG L+  ++V+TAAHC                 
Sbjct: 4   GHEAKPHSRPYMAYLMIWDQ-KSLKRCGGFLIQDDFVLTAAHCWGSSINVTL-------- 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVC-- 140
                  +    E   Q   VKR   +P +N  N+  DI LLQL      +  V+P+   
Sbjct: 55  ----GAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLP 110

Query: 141 LWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV 200
                  P Q  +V G              +             +  R            
Sbjct: 111 SNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVG 170

Query: 201 VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
                     GDSGG +V         +GIVS           +       T V
Sbjct: 171 DPEIKKTSFKGDSGGPLVCN----KVAQGIVSYG-------RNNGMPPRACTKV 213

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (187), Expect = 6e-17
 Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 29/232 (12%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+K    Q+P+  ++         + CGG+L+   +V+TAA C   +             
Sbjct: 4   GRKARPRQFPFLASIQN----QGRHFCGGALIHARFVMTAASCFQSQNPGV--------S 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +          E   +            ++    L D+ LLQL  + + +  V  + L 
Sbjct: 52  TVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLP 111

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
             +                  +G G              V++TV  +     +     V 
Sbjct: 112 LQNATVE-------AGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVL 164

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           T    +CNGD G  +V +        G+ S ++          +    FT V
Sbjct: 165 TRRGGICNGDGGTPLVCE----GLAHGVASFSLG------PCGRGPDFFTRV 206

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 1e-16
 Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 30/243 (12%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V        N+    GG+L+   +++TAAH +  K ++   ++  L +
Sbjct: 4   GQKAKMGNFPWQVFT------NIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNAS-LDV 56

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           +LG  +  +    G    ++V     Y    S N+ GDIALL+L + V     + P+CL 
Sbjct: 57  FLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLP 116

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR-GIVSITVARDGLRVCDTKHYVV 201
           D+ T         G        G           ++R  + +     + LR  +      
Sbjct: 117 DNDTFYDL-----GLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFS 171

Query: 202 FT--------DVANVCNGDSGGGMVFKIDSA--WYLRGIVSITVARDGLRVCDTKHYVVF 251
                        + C GDSGG    +  +   W   GIVS  +       C    Y  +
Sbjct: 172 QNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG------CSRG-YGFY 224

Query: 252 TDV 254
           T V
Sbjct: 225 TKV 227

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 2e-16
 Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 23/234 (9%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++      P+  ++     +N +++CGG LV+  +V++AAHC+      K        +
Sbjct: 4   GREAEAHARPYMASVQ----LNGAHLCGGVLVAEQWVLSAAHCLEDAADGK--------V 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +          E   +   V R   +P         D+ LLQLS        VRP+   
Sbjct: 52  QVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQ 111

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAW-YLRGIVSITVARDGLRVCDTKHYVV 201
                    +  +       +  G     +      +    +             +    
Sbjct: 112 RVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA 171

Query: 202 FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDV 254
            ++  + C GDSGG +V        L G+V+      G RVC  +    ++T V
Sbjct: 172 ESNRRDSCKGDSGGPLVCG----GVLEGVVTS-----GSRVCGNRKKPGIYTRV 216

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (183), Expect = 2e-16
 Identities = 48/233 (20%), Positives = 74/233 (31%), Gaps = 28/233 (12%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+  +L +  G   S+ CGG+L+  ++V+TAAHC+   P            
Sbjct: 4   GHEAQPHSRPYMASL-QMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNV------ 56

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                  H    +   Q            +++ N L DI L+QLSS  + S  V  V L 
Sbjct: 57  ---VLGAHNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLP 113

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                                + G                                  V 
Sbjct: 114 QQDQPV--------PHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVP 165

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY-VVFTDV 254
              A +C GDSGG ++        ++GI S       +  C T+ +   FT V
Sbjct: 166 RRKAGICFGDSGGPLICD----GIIQGIDSF-----VIWGCATRLFPDFFTRV 209

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 75.1 bits (183), Expect = 2e-16
 Identities = 49/235 (20%), Positives = 77/235 (32%), Gaps = 28/235 (11%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G   + G +P+ V++ R    N    CGGSL++ N V+TAAHCV+               
Sbjct: 4   GTSASAGDFPFIVSISR----NGGPWCGGSLLNANTVLTAAHCVSGYAQS---------- 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
               +     S              +    + S    D+A+L+LS+ +     +    L 
Sbjct: 50  ---GFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLA 106

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
              + P+  S+           GG           +  +   T          T      
Sbjct: 107 ASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCA 166

Query: 203 TDVAN---VCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
              +     C GDSGG +V   DS+  L G VS      G       +  V+  V
Sbjct: 167 GVSSGGKDSCQGDSGGPIV---DSSNTLIGAVSW-----GNGCARPNYSGVYASV 213

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 74.0 bits (180), Expect = 6e-16
 Identities = 50/232 (21%), Positives = 80/232 (34%), Gaps = 26/232 (11%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+    G++P+ V+L      + S+ CG S++  N V+TAAHCV                
Sbjct: 4   GKDAPVGKYPYQVSLRL----SGSHRCGASILDNNNVLTAAHCVDGLSNL---------- 49

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
              K H              V+   +   ++      D+AL+ L++ + ++  V+P+ L 
Sbjct: 50  NRLKVHVGTNYLSESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLS 109

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
            +             +       GG          L         RD  RV D+    + 
Sbjct: 110 TNDEDLESNPCT--LTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTLT 167

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
                 C+GDSGG +V          GIVS          C      V+T V
Sbjct: 168 KRGEGACHGDSGGPLVAN----GAQIGIVSFGSP------CALGEPDVYTRV 209

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.6 bits (179), Expect = 7e-16
 Identities = 48/233 (20%), Positives = 73/233 (31%), Gaps = 25/233 (10%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+   L        S++CGG LV  ++V+TAAHC+                
Sbjct: 4   GHEAKPHSRPYMAFLLFKTS-GKSHICGGFLVREDFVLTAAHCLGSSINVTL-------- 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                  +    E   Q   V+R   +P +N      DI LL+L+   D +  V P+ L 
Sbjct: 55  ----GAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLP 110

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                                       K+             +AR    +  T+     
Sbjct: 111 RSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGD 170

Query: 203 TDV-ANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
                N  +GDSGG +V         +GIVS           D     V+T +
Sbjct: 171 PSKRKNSFSGDSGGPLVCN----GVAQGIVSYG-------RNDGTTPDVYTRI 212

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 1e-15
 Identities = 42/232 (18%), Positives = 67/232 (28%), Gaps = 23/232 (9%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +      P+   L        S  CGG L+  N+V+TAAHC  +             +
Sbjct: 2   GTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSIT----------V 51

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            LG ++  +  D       +V +   +P +N+S    DI LL+L      ++ V  +   
Sbjct: 52  TLGAHNITEEEDTWQKL--EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFP 109

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                                        +                              
Sbjct: 110 SQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNP 169

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
               +   GDSGG ++         +GIVS           D K   VFT +
Sbjct: 170 RKTKSAFKGDSGGPLLCA----GVAQGIVSYG-------RSDAKPPAVFTRI 210

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 1e-15
 Identities = 46/238 (19%), Positives = 76/238 (31%), Gaps = 38/238 (15%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G        P+ V+L         + CGGSL++  +V++AAHC       +  + +  V 
Sbjct: 4   GYTCGANTVPYQVSLNSG-----YHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINV- 57

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                       EG  Q     +  ++P++NS+    DI L++L S    +  V  + L 
Sbjct: 58  -----------VEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
               +      + G                    Y   +  +         C + +    
Sbjct: 107 TSCASAGTQCLISGWGNTKSSGTS----------YPDVLKCLKAPILSDSSCKSAYPGQI 156

Query: 203 TDVANVCNGDSGGGMVFKIDSA------WYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           T       G  G G   + DS         L+GIVS      G          V+T V
Sbjct: 157 TSNMFCAYGLEGKGDSCQGDSGGPVVCSGKLQGIVSW-----GSGCQAKNKPGVYTKV 209

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (171), Expect = 1e-14
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 25/242 (10%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++ +    P+  ++         +VCGG L+   +V+TAAHC  +    +         
Sbjct: 6   GKEVSPHSRPFMASIQY----GGHHVCGGVLIDPQWVLTAAHCQYRFTKGQS-------P 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
            +         +E   Q  ++K+   +    S     DI L++L +    + +V+ + + 
Sbjct: 55  TVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIR 114

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGM---VFKIDSAWYLRGIVSITVARDGLRVCDTKHY 199
             ++                         + ++      R + +     +G         
Sbjct: 115 SKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMV 174

Query: 200 VVFTDVANV--CNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRV 257
                      C GD+GG ++ K         IVS      G          ++T + + 
Sbjct: 175 CAGDAKGQKDSCKGDAGGPLICK----GVFHAIVSG-----GHECGVATKPGIYTLLTKK 225

Query: 258 HI 259
           + 
Sbjct: 226 YQ 227

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 2e-14
 Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 29/243 (11%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           GQK   G +PW V +             G+L+  N+V+TAAH V ++ +D          
Sbjct: 4   GQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAVYEQKHDASA------- 50

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
              +    +       Q             + + +  DIAL++L++ V  +  + P+CL 
Sbjct: 51  LDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                    +   GT+   G +  G + +      +  +          +    +  V  
Sbjct: 111 RKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTA 170

Query: 203 TDVA--------NVCNGDSGGGMVF--KIDSAWYLRGIVSITVARDGLRVC-DTKHYVVF 251
             +         + C GDSGG +VF       W++ GIVS      G   C +   Y V+
Sbjct: 171 NMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSW-----GSMNCGEAGQYGVY 225

Query: 252 TDV 254
           T V
Sbjct: 226 TKV 228

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (167), Expect = 3e-14
 Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 31/233 (13%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G++     WP+ V+L     +   + CG +L++ N+V++AAHCV                
Sbjct: 4   GRRARPHAWPFMVSLQ----LRGGHFCGATLIAPNFVMSAAHCVANVNVRA--------- 50

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                  H  S     +     +      ++  N L DI +LQL+     +  V+   L 
Sbjct: 51  VRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLP 110

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                        G  V     G G++ +      +   +++TV          +   V 
Sbjct: 111 AQGRRL-------GNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-----SLCRRSNVC 158

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV-VFTDV 254
           T V     G   G     +     + GI S          C +  Y   F  V
Sbjct: 159 TLVRGRQAGVCFGDSGSPLVCNGLIHGIASF-----VRGGCASGLYPDAFAPV 206

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (166), Expect = 4e-14
 Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 23/234 (9%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
                R    W V+L         ++CGGSL+  ++V+TA  C   +             
Sbjct: 3   NGIPTRTNIGWMVSLRY----RNKHICGGSLIKESWVLTARQCFPSRDLKDY-------- 50

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                      D  G  +++ K+V             D+ L++L+       +V  + L 
Sbjct: 51  ----EAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLP 106

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
           +  +   + ++                    +  Y+ G    +    G    +       
Sbjct: 107 NYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAG 166

Query: 203 TD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
            +   +  C GD GG +V +      + G++       G          +F  V
Sbjct: 167 AEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIV-----PGRGCAIPNRPGIFVRV 215

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 9e-14
 Identities = 45/239 (18%), Positives = 71/239 (29%), Gaps = 23/239 (9%)

Query: 8   CGT-VVYNKAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCV 66
           CG      + +  +  G       +PW V          +   GG+L++  +V+TAAH V
Sbjct: 1   CGVPREPFEEKQRIIGGSDADIKNFPWQVFFD-------NPWAGGALINEYWVLTAAHVV 53

Query: 67  TKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQL 126
                       T V           + E            +      +N+  DIAL++L
Sbjct: 54  EGNREPTMYVGSTSVQTSRLAKSKMLTPE--HVFIHPGWKLLAVPEGRTNFDNDIALVRL 111

Query: 127 SSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGI----- 181
              V     V P+CL   S+    +    G     G +          A  L        
Sbjct: 112 KDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKC 171

Query: 182 -----VSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKI---DSAWYLRGIVS 232
                   T   +                 + C GDSGG    +     + +Y  G+VS
Sbjct: 172 KEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVS 230

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 66.8 bits (161), Expect = 2e-13
 Identities = 47/232 (20%), Positives = 78/232 (33%), Gaps = 20/232 (8%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G +   G +P+   L  T        CGGSL+   +++TAAHCV                
Sbjct: 4   GYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVV-------- 55

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
           YLG   Q++            +R+  +  FN   YL D+AL+++         ++P+ L 
Sbjct: 56  YLGSAVQYEG-----EAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYT-DNIQPIRLP 109

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                  +   +  T    G S    V       Y   I +   A++       +  +  
Sbjct: 110 SGEELNNKFENIWATVSGWGQSNTDTVILQY--TYNLVIDNDRCAQEYPPGIIVESTICG 167

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
                        G  F +     L G+VS          C++   V F+ V
Sbjct: 168 DTSDGKSPCFGDSGGPFVLSDKNLLIGVVSFVSGAG----CESGKPVGFSRV 215

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 9e-12
 Identities = 45/232 (19%), Positives = 65/232 (28%), Gaps = 24/232 (10%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G+++     P+   L           CGG LV  ++V+TAAHC                 
Sbjct: 4   GRESRPHSRPYMAYLQIQSP-AGQSRCGGFLVREDFVLTAAHCWGSNINVTL-------- 54

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                  +    E   Q+   +R   +P +N      DI LLQLS  V  +  V PV L 
Sbjct: 55  ----GAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALP 110

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
                    +              G     +    ++                       
Sbjct: 111 RAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDR 170

Query: 203 TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
            +      GDSGG ++          GIVS                 VFT V
Sbjct: 171 RERKAAFKGDSGGPLLCN----NVAHGIVSYG-------KSSGVPPEVFTRV 211

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 61.7 bits (148), Expect = 1e-11
 Identities = 45/233 (19%), Positives = 80/233 (34%), Gaps = 28/233 (12%)

Query: 23  GQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVI 82
           G + A+G++P+ V L        S  CGG+L + + V+TAAHCV+    +          
Sbjct: 4   GTRAAQGEFPFMVRL--------SMGCGGALYAQDIVLTAAHCVSGSGNNTS-------- 47

Query: 83  YLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLW 142
                      D       +V+   +      +    D AL++L+  ++           
Sbjct: 48  ---ITATGGVVDLQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTA 104

Query: 143 DDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF 202
            +       +     +   G S    + K +  +            + +   +       
Sbjct: 105 YNQG---TFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPD 161

Query: 203 TDVANVCNGDSGGGMVFKIDS-AWYLRGIVSITVARDGLRVCDTKHYVVFTDV 254
           T   + C GDSGG M  K ++  W   GIVS      G       +  V+T+V
Sbjct: 162 TGGVDTCQGDSGGPMFRKDNADEWIQVGIVSW-----GYGCARPGYPGVYTEV 209

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 60.4 bits (145), Expect = 4e-11
 Identities = 24/245 (9%), Positives = 48/245 (19%), Gaps = 23/245 (9%)

Query: 30  QWPWHVALYRTEGINLSYVCGGSLVSV------NYVITAAHCVTKKPYDKPVDSDTLVIY 83
                +        + +  C GSLV+        Y +TA HC           S    I 
Sbjct: 17  GRRDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTA------STAASIV 70

Query: 84  LGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWD 143
           +   +Q+        +             + S       +    +  D+++         
Sbjct: 71  VYWNYQNS-----TCRAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANP 125

Query: 144 DSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT 203
                         +     +                  S      G            +
Sbjct: 126 AFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPS 185

Query: 204 DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRVHIYPTF 263
                  G SG  +         + G +    +        T     +  V         
Sbjct: 186 GGV-TEPGSSGSPI---YSPEKRVLGQLHGGPSSCSA--TGTNRSDQYGRVFTSWTGGGA 239

Query: 264 NSSNY 268
            +S  
Sbjct: 240 AASRL 244

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 31/207 (14%)

Query: 26  TARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLG 85
                 P++   Y T G      C G+L++ N ++T  HCV          S +      
Sbjct: 12  ANTRVAPYNSIAYITFG---GSSCTGTLIAPNKILTNGHCVYNT------ASRSYSAKGS 62

Query: 86  KYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDS 145
            Y     S          +        N+     D A+++  +++  ++  R +    + 
Sbjct: 63  VYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNL 122

Query: 146 TAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDV 205
           T                   G  +                   +       +   +    
Sbjct: 123 T-------------------GTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYYT 163

Query: 206 ANVCNGDSGGGMVFKIDSAWYLRGIVS 232
            +  +G+SG  M+   D    + G+ +
Sbjct: 164 IDTFSGNSGSAML---DQNQQIVGVHN 187

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 26/211 (12%), Positives = 56/211 (26%), Gaps = 35/211 (16%)

Query: 30  QWPW-HVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYH 88
              +  V   + E    +++  G +V  + ++T  H V         D   L  +    +
Sbjct: 16  NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVV----DATHGDPHALKAFPSAIN 71

Query: 89  QHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAP 148
           Q  + + G    +  K               D+A+++ S +         V     S   
Sbjct: 72  QDNYPNGGFTAEQITKYSGEG----------DLAIVKFSPNEQNKHIGEVVKPATMSN-- 119

Query: 149 LQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANV 208
                          +     +  D                  ++   K   +  D  + 
Sbjct: 120 -------NAETQTNQNITVTGYPGDKPVATMWESKG-------KITYLKGEAMQYD-LST 164

Query: 209 CNGDSGGGMVFKIDSAWYLRGIVSITVARDG 239
             G+SG  +    +    + GI    V  + 
Sbjct: 165 TGGNSGSPV---FNEKNEVIGIHWGGVPNEF 192

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 33/224 (14%)

Query: 17  QPLVTYGQKTARGQWPW-HVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPV 75
           + L +   +  R ++P+  +     +G        G L+  N V+T  H        K  
Sbjct: 27  KELFSKVDEKDRQKYPYNTIGNVFVKG---QTSATGVLIGKNTVLTNRHIA------KFA 77

Query: 76  DSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMY 135
           + D   +          +        + +   I      +    D+AL++L  D +    
Sbjct: 78  NGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGV--DLALIRLKPDQNG--- 132

Query: 136 VRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD 195
                     +   ++S  +  +  +   G  +        Y        + R  + +  
Sbjct: 133 ---------VSLGDKISPAKIGTSNDLKDGDKLELIG----YPFDHKVNQMHRSEIELTT 179

Query: 196 TKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDG 239
               + +       N  SG G+    +S   L GI S  V+   
Sbjct: 180 LSRGLRYYGFTVPGN--SGSGI---FNSNGELVGIHSSKVSHLD 218

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 21/166 (12%), Positives = 32/166 (19%), Gaps = 19/166 (11%)

Query: 55  SVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNS 114
              Y +TA HC             ++V                              +N 
Sbjct: 24  GARYFVTAGHCTNISANWSASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDLYNG 83

Query: 115 SNYLGD----------IALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDS 164
           S               I     ++ V            +    P+            GDS
Sbjct: 84  STQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDS 143

Query: 165 GGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCN 210
           GG       +     GI S            T    +   V    +
Sbjct: 144 GGAHF----AGSVALGIHSG-----SSGCSGTAGSAIHQPVTEALS 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	100.0
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	100.0
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	100.0
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	100.0
d1elva1	259	Complement C1S protease, catalytic domain {Human (	100.0
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	100.0
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	100.0
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	100.0
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	100.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	100.0
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	100.0
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	100.0
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	100.0
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.97
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.8
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.8
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	99.61
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	99.61
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.58
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.55
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	99.52
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	99.5
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	99.49
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.47
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	99.47
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.47
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	99.45
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	99.45
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	99.45
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	99.45
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	99.45
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	99.44
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.44
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.44
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	99.43
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.41
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	99.38
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	99.37
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	99.34
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	99.34
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.34
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.33
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	99.33
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	99.33
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	99.32
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.3
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.28
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.28
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	99.25
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.24
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.23
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	99.22
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	99.22
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	99.21
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	99.2
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.17
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	99.14
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.13
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	99.12
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	99.1
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	99.05
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.03
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.02
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	98.92
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	98.91
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	98.86
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	98.69
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.67
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	98.53
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.41
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.19
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	98.14
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	98.01
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	97.91
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	97.66
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	97.35
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	97.35
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	95.85
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	95.14
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	94.52
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	91.02

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-38  Score=276.44  Aligned_cols=227  Identities=26%  Similarity=0.421  Sum_probs=161.3

Q ss_pred             CCccccC-CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEece
Q psy15989          8 CGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGK   86 (363)
Q Consensus         8 CG~~~~~-~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~   86 (363)
                      ||++..+ ..++||+||++|.+++|||+|+|.........++|+||||+++||||||||+....       ....+....
T Consensus         1 cg~~~~~~~~~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhC~~~~~-------~~~~~~~~~   73 (251)
T d1pytd_           1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTL-------TYRVALGKN   73 (251)
T ss_dssp             CCCCSSCCCSSSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTC-------CEEEEESCS
T ss_pred             CcCCCCCCCCCCeEECCEECCCCCCCcEEEEEEEeCCCceeEEeEEEEcCCeEEEeeecccccc-------cceeeeeee
Confidence            8886433 45789999999999999999999876655567899999999999999999997532       112222222


Q ss_pred             ecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCc
Q psy15989         87 YHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGG  166 (363)
Q Consensus        87 ~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~  166 (363)
                      ......  ....+...|+++++||.|+.....|||||++|.+|+.|++.++||||+......      .....|. .+||
T Consensus        74 ~~~~~~--~~~~~~~~v~~i~~h~~y~~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~~~------~~~~~~~-~~g~  144 (251)
T d1pytd_          74 NLEVED--EAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLL------PQDYPCF-VTGW  144 (251)
T ss_dssp             BTTCSC--CSSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCC------CTTCEEE-ECBC
T ss_pred             eeeccc--CCCceEEeEEEEEEeeeecccccCCceeeeecCCCcccCceeEEEEeeccccCC------CCceeEE-EecC
Confidence            211111  255678999999999999999999999999999999999999999998877621      1112233 3455


Q ss_pred             cceEEecCeeEEeeeeEEEEeecCeeeccccc----------eEEe-cCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        167 GMVFKIDSAWYLRGIVSITVARDGLRVCDTKH----------YVVF-TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~----------~~~~-~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      +.....+..  ...+....+...+...|...+          .+.. ....+.|.||+||||++..+++|+|+||+|++.
T Consensus       145 ~~~~~~~~~--~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~c~~~~~~~~~c~gd~G~Pl~~~~~~~~~L~Gi~S~~~  222 (251)
T d1pytd_         145 GRLYTNGPI--AAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQWDVRGIVSFGS  222 (251)
T ss_dssp             CCSSCCSCC--CSBCBCCEEECBCHHHHTSTTTTTTTCCTTEEEECCSCSSCCCCSCTTCEEEEESSSSEEEEEEEEECC
T ss_pred             ccccCCCcc--cceeceeeccccCHHHHhhhhcccccccCceEEeccCCCCccccCCCCCceEEeeCCEEEEEEEEEECC
Confidence            433222111  112333445566677776421          2332 234678999999999999999999999999852


Q ss_pred             ecCcceecC-CCcceEEEeeeE
Q psy15989        236 ARDGLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       236 ~~~g~~~c~-~~~~~v~~~V~~  256 (363)
                          ...|+ ...+.+|++|..
T Consensus       223 ----~~~c~~~~~p~vyt~v~~  240 (251)
T d1pytd_         223 ----GLSCNTFKKPTVFTRVSA  240 (251)
T ss_dssp             ----SSCTTBTTBCEEEEEGGG
T ss_pred             ----CCCCCCCCCCeEEEEHHH
Confidence                12354 466788998865

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-38  Score=272.11  Aligned_cols=219  Identities=29%  Similarity=0.408  Sum_probs=163.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|+++||||+|+|+..+.   .++|+||||+++||||||||+.+...........+.+..+.++..... ....+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~---~~~C~GtlIs~~~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   76 (241)
T d1eaxa_           1 VVGGTDADEGEWPWQVSLHALGQ---GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRS-APGVQ   76 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTT---EEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTT-STTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECCC---CEEEEEEEEcCCEEEECeeeeecCCceeeeccceeeEEeeeeeccccc-CCCcE
Confidence            79999999999999999986543   789999999999999999999876655555666788888887665443 35678


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+.....||||||+|++|+.|++.++|||||......      .....+. ..||+.....  .....
T Consensus        77 ~~~v~~i~~Hp~y~~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~~~------~~~~~~~-~~g~~~~~~~--~~~~~  147 (241)
T d1eaxa_          77 ERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVF------PAGKAIW-VTGWGHTQYG--GTGAL  147 (241)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCC------CTTCEEE-EEESSBSSTT--SCBCS
T ss_pred             EEEEEEEEECCcccccccCCcccccccCCceecCcccceeecccccccc------ccceeEE-EeccCCcccc--ccccc
Confidence            8999999999999999999999999999999999999999998755411      1111222 2333321111  11122


Q ss_pred             eeeEEEEeecCeeeccccc--------eEEe--cCCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTKH--------YVVF--TDVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~--------~~~~--~~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .++...+.+.+...|...+        .++.  ......|.||+||||++.. +++|+|+||+|+     +..+|....+
T Consensus       148 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~~L~Gi~s~-----~~~c~~~~~p  222 (241)
T d1eaxa_         148 ILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSW-----GDGCAQRNKP  222 (241)
T ss_dssp             BCEEEEEEECCHHHHHHHSTTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEE-----CSSSSCTTCC
T ss_pred             cceEEEEEEeCHHHHHHHhCccccCccceeccCCCCcccccCcccceeEEEcCCCeEEEEEEEEE-----CCCCCCCCCC
Confidence            3556677778888886322        2332  2346789999999999876 689999999998     4445556778


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       223 ~vft~V~~  230 (241)
T d1eaxa_         223 GVYTRLPL  230 (241)
T ss_dssp             EEEEESGG
T ss_pred             EEEEEHHH
Confidence            89998865

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-38  Score=271.44  Aligned_cols=214  Identities=27%  Similarity=0.532  Sum_probs=159.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+..+    .++|+||||+++||||||||+....    .....+.+..|........ ....+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~   71 (235)
T d1ekbb_           1 IVGGSDSREGAWPWVVALYFDD----QQVCGASLVSRDWLVSAAHCVYGRN----MEPSKWKAVLGLHMASNLT-SPQIE   71 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEECSSSEEEECHHHHTTCC----SSGGGEEEEESCCBTTCCC-CTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----CEEEEEEEEcCCEEEEChhhccCCC----CCccceeeeeccccccccc-Cccee
Confidence            7999999999999999998654    7889999999999999999997642    2345678888887665443 35668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|.++++||+|+.....||||||+|++|+.|++.++|||||......     ..+ ..|. .+||+.....+.  ...
T Consensus        72 ~~~v~~~~~hp~~~~~~~~~diAli~L~~~v~~~~~~~picLp~~~~~~-----~~~-~~~~-~~g~~~~~~~~~--~~~  142 (235)
T d1ekbb_          72 TRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVF-----PPG-RICS-IAGWGALIYQGS--TAD  142 (235)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCC-----CTT-CEEE-EEESSBSSTTSC--BCS
T ss_pred             EeeeeeeeecccccccCccchhhhhhhcCceecCCceeeEECCCccccC-----Ccc-eEEE-EecccccccCCc--ccc
Confidence            8999999999999999999999999999999999999999998766511     111 1222 355554322111  122


Q ss_pred             eeeEEEEeecCeeeccc---------cceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDT---------KHYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~---------~~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .++...+.+.+...|..         ...+...  ...+.|.||+||||++..+++|+|+||+|+     +..+|....+
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~-----g~~~~~~~~p  217 (235)
T d1ekbb_         143 VLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSF-----GYQCALPNRP  217 (235)
T ss_dssp             BCEEEEEEBCCHHHHHHHCTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEE-----CSSSSCTTCC
T ss_pred             cceeeEEEEecHHHhcccccccccCcccEEEEcCCCCcccccCCCCCccEEccCCEEEEEEEEEe-----cCCCCCCCCC
Confidence            34555666666555531         1123322  224689999999999999999999999999     4445666778


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       218 ~v~t~v~~  225 (235)
T d1ekbb_         218 GVYARVPR  225 (235)
T ss_dssp             EEEEEGGG
T ss_pred             EEEEEHHH
Confidence            89988754

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-38  Score=271.95  Aligned_cols=215  Identities=30%  Similarity=0.419  Sum_probs=157.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.++||||+|+|+.... ...++|+||||+++||||||||+.....    ....+.+..+.....     ...+
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~-~~~~~C~GtLIs~~~VLTaAhCv~~~~~----~~~~~~~~~~~~~~~-----~~~~   70 (243)
T d2fpza1           1 IVGGQEAPRSKWPWQVSLRVHGP-YWMHFCGGSLIHPQWVLTAAHCVGPDVK----DLAALRVQLREQHLY-----YQDQ   70 (243)
T ss_dssp             CBSCEECCTTSCTTEEEEEECSS-SCEEEEEEEEEETTEEEECHHHHCSBCC----CGGGEEEECCCSBTT-----TTCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCC-cccEEEEEEEEeCCEEEECceeccCCCC----cceeEEEEeeecccc-----cccE
Confidence            79999999999999999976543 3478999999999999999999976432    234566666655443     4567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+..+..||||||+|++|+.+++.++|+|||.......     .+. .+. ..+|+............
T Consensus        71 ~~~i~~i~~hp~~~~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~~~~-----~~~-~~~-~~~~g~~~~~~~~~~~~  143 (243)
T d2fpza1          71 LLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFP-----PGM-PCW-VTGWGDVDNDERLPPPF  143 (243)
T ss_dssp             CEEEEEEEECTTCSCTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTCCCC-----TTC-EEE-EEESSCSBTTBCCCTTC
T ss_pred             EEeeeeeeccccccccccccchhhhcccCccccceeEEEeecCchhhccC-----CCc-eeE-EEecccccCCCcCCCCc
Confidence            89999999999999999999999999999999999999999987664211     111 111 12222211111111122


Q ss_pred             eeeEEEEeecCeeecccc-----------------ceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCccee
Q psy15989        180 GIVSITVARDGLRVCDTK-----------------HYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRV  242 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~-----------------~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~  242 (363)
                      .+....+.+++...|...                 ..+........|.||+||||++..+++|+|+||+|+     +..+
T Consensus       144 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~L~Gi~s~-----~~~~  218 (243)
T d2fpza1         144 PLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGPLVCKVNGTWLQAGVVSW-----GEGC  218 (243)
T ss_dssp             BCEEEEEEEECHHHHHHHHHTTBCSCTTSCSSCTTEEEECCSSSBCCTTCTTCEEEEEETTEEEEEEEEEE-----CSSS
T ss_pred             EeEEEEEeecCHHHhhhhhhcccccCCccceeeeeeEecCCCCCCCccCCCCCeEEEeeCCEEEEEEEEEE-----CCCC
Confidence            344566777777778522                 123345567889999999999999999999999998     4445


Q ss_pred             cCCCcceEEEeeeE
Q psy15989        243 CDTKHYVVFTDVKR  256 (363)
Q Consensus       243 c~~~~~~v~~~V~~  256 (363)
                      |....+.+|++|..
T Consensus       219 ~~~~~p~v~t~v~~  232 (243)
T d2fpza1         219 AQPNRPGIYTRVTY  232 (243)
T ss_dssp             SBTTBCEEEEEGGG
T ss_pred             CCCCCCEEEEEHHH
Confidence            66677889998865

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-38  Score=273.18  Aligned_cols=216  Identities=30%  Similarity=0.487  Sum_probs=154.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||+.|.++||||+|+|+...   ..++|+||||+++||||||||+.+        ...+.|++|..+.....  ...+
T Consensus         1 i~~G~~~~~~e~Pw~v~i~~~~---~~~~C~GtLIs~~~VLTaAhCv~~--------~~~~~v~~g~~~~~~~~--~~~~   67 (240)
T d1autc_           1 LIDGKMTRRGDSPWQVVLLDSK---KKLACGAVLIHPSWVLTAAHCMDE--------SKKLLVRLGEYDLRRWE--KWEL   67 (240)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT---SCEEEEEEEEETTEEEECGGGSSS--------CSCCEEEESCCBTTCCC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEEECC---CCEEEEEEEEeCCEEEECceeccC--------cccceeecccccccccc--ccce
Confidence            7899999999999999997643   278999999999999999999964        34578999998876554  6678


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC---ee
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS---AW  176 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~---~~  176 (363)
                      ...|+++++||.|+..+..||||||||++|+.|++.|+|||||......... ...+. .|. .+||+.......   ..
T Consensus        68 ~~~v~~i~~~~~~~~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~~~~-~~~~~-~~~-~~g~g~~~~~~~~~~~~  144 (240)
T d1autc_          68 DLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAEREL-NQAGQ-ETL-VTGWGYHSSREKEAKRN  144 (240)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTT-TSTTC-EEE-EEECCCCCSCCSCCCSS
T ss_pred             eeeeeccccceeeeccccccceeEEEeCCcccCCcccccceeccCccccccc-ccCCC-eEE-EEeeccccCCCcccccc
Confidence            8999999999999999999999999999999999999999998654200000 00011 122 344443221110   00


Q ss_pred             EEeeeeEEEEeecCeeeccccce--------E--EecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCC
Q psy15989        177 YLRGIVSITVARDGLRVCDTKHY--------V--VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK  246 (363)
Q Consensus       177 ~~~~l~~~~~~~~~~~~C~~~~~--------~--~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~  246 (363)
                      ....+....+++.+...|.....        +  ......+.|.||+||||++..+++|+|+||+|+     +..+|...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~G~pl~~~~~~~~~l~Gi~s~-----g~~c~~~~  219 (240)
T d1autc_         145 RTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSW-----GEGCGLLH  219 (240)
T ss_dssp             CSSBCEEEEEEEECHHHHHHHCSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEE-----CSSSSCTT
T ss_pred             cceeeecceeeEEeehhhhhhcccccccceeeeccccccCCCcCCccCceeEEcCCCCEEEEEEEEe-----CCCCCCCC
Confidence            11123344455555545542211        1  112346789999999999999999999999999     43444566


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .+.+|++|..
T Consensus       220 ~p~vftrv~~  229 (240)
T d1autc_         220 NYGVYTKVSR  229 (240)
T ss_dssp             CCEEEECGGG
T ss_pred             CCeEEEEHHH
Confidence            7889998865

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=2.7e-37  Score=266.85  Aligned_cols=217  Identities=24%  Similarity=0.304  Sum_probs=161.9

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+........++|+||||+++||||||||+.....   .....+.+..+........  ...+
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~   75 (237)
T d2f91a1           1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDY---ENPSGLQIVAGELDMSVNE--GSEQ   75 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCT---TSCCSEEEEESCSBTTSCC--SCCE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCCcEEEEEEEEeCCEEEECcccccccCC---ccccceeEEeeeccccccc--Ccce
Confidence            7999999999999999998776555578999999999999999999986432   2345577777666554433  6677


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...|+++++||+|+.....||||||+|++++.+++.++|||++......       + ..|. ..||+.....+.  ...
T Consensus        76 ~~~v~~i~~h~~y~~~~~~~diAll~l~~~v~~~~~~~~i~~~~~~~~~-------~-~~~~-~~g~g~~~~~~~--~~~  144 (237)
T d2f91a1          76 IITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTA-------T-GDVI-VTGWGTTSEGGN--TPD  144 (237)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCC-------C-SEEE-EEESCCSSTTCC--CCS
T ss_pred             eeeEEEEEEccccCCCccccceeeeccccccccCCceeeeeccccCccc-------c-ccee-eccccccCCCCc--CCc
Confidence            8999999999999999999999999999999999999999998876521       1 1222 345544322111  122


Q ss_pred             eeeEEEEeecCeeeccccc---------eEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTKH---------YVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~---------~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .++...+..++.+.|...+         .+...  .....|.||+||||++..+++|+|+||+|++     ..+|....+
T Consensus       145 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~~~~~~L~Gi~S~g-----~~c~~~~~p  219 (237)
T d2f91a1         145 VLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWG-----YGCARPGYP  219 (237)
T ss_dssp             BCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEE-----SSSSCTTCC
T ss_pred             hheEEEEEEeCHHHHhhhccCCcccCceeEeecCCCccccccCCCCCeEEEecCCeEEEEEEEEeC-----CCCCCCCCC
Confidence            3455666777777886321         22222  2357899999999999999999999999994     344555668


Q ss_pred             eEEEeeeEE
Q psy15989        249 VVFTDVKRV  257 (363)
Q Consensus       249 ~v~~~V~~i  257 (363)
                      .+|++|..+
T Consensus       220 ~v~t~v~~y  228 (237)
T d2f91a1         220 GVYTEVSYH  228 (237)
T ss_dssp             EEEEEGGGS
T ss_pred             EEEEEHHHH
Confidence            899988653

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=267.85  Aligned_cols=208  Identities=19%  Similarity=0.297  Sum_probs=153.5

Q ss_pred             eeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCc
Q psy15989         19 LVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGV   98 (363)
Q Consensus        19 rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~   98 (363)
                      ||+||++|+++||||+|+|+..+    .++|+||||+++||||||||+.+..     ....+.|..+........  ...
T Consensus         2 ri~gG~~a~~~e~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~-----~~~~~~v~~~~~~~~~~~--~~~   70 (240)
T d1mzaa_           2 EIIGGKEVSPHSRPFMASIQYGG----HHVCGGVLIDPQWVLTAAHCQYRFT-----KGQSPTVVLGAHSLSKNE--ASK   70 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGSCTTC-----SCSCEEEEESCSBSSSCC--TTC
T ss_pred             EEECCEECCCCCCCcEEEEEECC----eEEEEEEEEeCCEEEECeEcccccC-----CcceeEEEEeecccCcCC--ccc
Confidence            89999999999999999998643    7899999999999999999998643     334678888887766544  566


Q ss_pred             eeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEE
Q psy15989         99 QNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL  178 (363)
Q Consensus        99 ~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~  178 (363)
                      +.+.+.+++.||.|+.....+|||||+|++++.|++.++|||||.......       ...+. ..||+........ ..
T Consensus        71 ~~~~~~~i~~h~~~~~~~~~~diAll~l~~~~~~~~~~~picL~~~~~~~~-------~~~~~-~~g~g~~~~~~~~-~~  141 (240)
T d1mzaa_          71 QTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRS-------GTKCK-VTGWGATDPDSLR-PS  141 (240)
T ss_dssp             EEEEEEEEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCT-------TCEEE-EEECCCSSTTCSS-CC
T ss_pred             eeEeeeeeeeeccccccccCcceEEEeecceeeeeeccccccccccccccc-------eeeEE-EEEeccccCCcCc-CC
Confidence            789999999999999999999999999999999999999999987665211       11111 1222211110000 12


Q ss_pred             eeeeEEEEeecCeeeccccc------------eEEe-c-CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC
Q psy15989        179 RGIVSITVARDGLRVCDTKH------------YVVF-T-DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD  244 (363)
Q Consensus       179 ~~l~~~~~~~~~~~~C~~~~------------~~~~-~-~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~  244 (363)
                      ..++...+.+.+.+.|....            .+.. . ...+.|.|||||||++.    ++|+||+|+     +..++.
T Consensus       142 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~----~~l~Gi~S~-----g~~c~~  212 (240)
T d1mzaa_         142 DTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK----GVFHAIVSG-----GHECGV  212 (240)
T ss_dssp             SBCEEEEEEECCHHHHTSTTTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEET----TEEEEEECS-----SCCSSC
T ss_pred             cccEEEEEEEecHHHhhhhhhccCCcccccceEEeccCCCCccCccCCCCCeEEEC----CEEEEEEEe-----CCCCCC
Confidence            23556677777888886321            1222 2 23578999999999984    499999998     444445


Q ss_pred             CCcceEEEeee
Q psy15989        245 TKHYVVFTDVK  255 (363)
Q Consensus       245 ~~~~~v~~~V~  255 (363)
                      ...+.+|++|.
T Consensus       213 ~~~p~vftrvs  223 (240)
T d1mzaa_         213 ATKPGIYTLLT  223 (240)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCCCeEEEEEH
Confidence            56788999875

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=6.1e-37  Score=262.35  Aligned_cols=205  Identities=27%  Similarity=0.337  Sum_probs=156.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.++||||+|+|.........++|+||||+++||||||||+.          ..+.|++|........  ...+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaA~C~~----------~~~~v~~g~~~~~~~~--~~~~   68 (224)
T d3rp2a_           1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG----------REITVILGAHDVRKRE--STQQ   68 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC----------SEEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECcCCCCCCEEEEEEEeCCCCeEEEEEEEEcCCeeEecccccc----------cccEEEeccccccCcc--ccce
Confidence            799999999999999999876555568999999999999999999984          3588999998776554  5668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...|+++++||+|+..+..||||||+|++|+.|++.++|+|||..... .    ..+ ..+. ..||+.....+  ....
T Consensus        69 ~~~v~~~~~~~~~~~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~~-~----~~~-~~~~-~~g~~~~~~~~--~~~~  139 (224)
T d3rp2a_          69 KIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDF-I----HPG-AMCW-AAGWGKTGVRD--PTSY  139 (224)
T ss_dssp             EEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCC-C----CTT-CEEE-EEESSEEETTE--EECS
T ss_pred             eeeEEEEEecccccccccccceeeeeecceeEeccccceEEecccccc-c----CCC-cEEE-EeeeeeeecCC--Cccc
Confidence            889999999999999999999999999999999999999999876651 1    111 1222 34555433221  1223


Q ss_pred             eeeEEEEeecCeeeccccce-------EEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceE
Q psy15989        180 GIVSITVARDGLRVCDTKHY-------VVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVV  250 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~-------~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v  250 (363)
                      .++...+.+++.+.|...+.       +..  ......|.+|+||||++.    ++|+||+|++     .  |....+.+
T Consensus       140 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~----~~l~Gi~S~g-----~--~~~~~p~v  208 (224)
T d3rp2a_         140 TLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVSYG-----H--PDAKPPAI  208 (224)
T ss_dssp             BCEEEEEEEECGGGTTTTTCCCTTTEEEECCTTSCCBCCTTTTTCEEEET----TEEEEEEEEC-----C--TTCCSCEE
T ss_pred             eeeEEEEEccCHHHhhhcccccccceeeeccCcccccCcCCCcCCeEEEc----CEEEEEEEEC-----C--CCCCCCeE
Confidence            46677788888899975332       222  223577999999999984    5999999994     2  22356889


Q ss_pred             EEeeeE
Q psy15989        251 FTDVKR  256 (363)
Q Consensus       251 ~~~V~~  256 (363)
                      |++|..
T Consensus       209 yt~v~~  214 (224)
T d3rp2a_         209 FTRVST  214 (224)
T ss_dssp             EEEHHH
T ss_pred             EEEHHH
Confidence            988754

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-37  Score=265.31  Aligned_cols=205  Identities=25%  Similarity=0.309  Sum_probs=152.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.++||||+|+|.........++|+||||+++||||||||+..          ..+|++|.+++....  ...+
T Consensus         1 I~gG~~a~~ge~P~~v~i~~~~~~~~~~~C~GtLI~~~~VLTaAhC~~~----------~~~v~~G~~~~~~~~--~~~~   68 (227)
T d1fi8a_           1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGS----------KIQVTLGAHNIKEQE--KMQQ   68 (227)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECTTC-CCEEEEEEEETTEEEECGGGCCS----------EEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEEecccccc----------cceeeeeecccccCC--CCce
Confidence            7999999999999999998766555578999999999999999999863          467999998876654  5668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...|.+++.||.|+..+..||||||+|++|+.|++.|+||||+......     ..+ ..|. ..||+.......  ...
T Consensus        69 ~~~v~~i~~~~~~~~~~~~~diall~l~~~i~~~~~v~picl~~~~~~~-----~~~-~~~~-~~g~g~~~~~~~--~~~  139 (227)
T d1fi8a_          69 IIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKV-----KPG-DVCY-VAGWGKLGPMGK--YSD  139 (227)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTCCC-----CTT-CEEE-EEESCBSSTTCC--BCS
T ss_pred             EEEEEEEEecccccCccccchhhhhhccCceeeeeeEEEEEecccCccc-----CCC-CEEE-EEeeccccCCCC--CCc
Confidence            8899999999999999999999999999999999999999998776521     111 1222 334443221111  122


Q ss_pred             eeeEEEEeecCeeeccccce---------EEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTKHY---------VVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~---------~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .+....+.+++.+.|...+.         +..  ......|.||+||||++.    ++|+||+|++.      .| ...+
T Consensus       140 ~l~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g~------~~-~~~p  208 (227)
T d1fi8a_         140 TLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFRGDSGGPLVCK----KVAAGIVSYGQ------ND-GSTP  208 (227)
T ss_dssp             BCEEEEEEBCCHHHHHHHTTTTCCTTTEEEESCTTSCCBCCTTCTTSEEEET----TEEEEEEEEEE------TT-CCSC
T ss_pred             eeeEEEEEEEEchhhhhhhhcccccceeeeeeeccccCCCcCCCcCCEEEEC----CEEEEEEEEcC------CC-CCCC
Confidence            34566677778777863221         111  123578999999999984    59999999952      23 2457


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       209 ~vyt~v~~  216 (227)
T d1fi8a_         209 RAFTKVST  216 (227)
T ss_dssp             EEEEEGGG
T ss_pred             eEEEEHHH
Confidence            88988754

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=264.63  Aligned_cols=200  Identities=28%  Similarity=0.410  Sum_probs=154.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|++++|||+|+|+..+    .++|+||||+++||||||||+..          ...|++|........  ...+
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~----------~~~v~~g~~~~~~~~--~~~~   64 (221)
T d1lo6a_           1 LVHGGPCDKTSHPYQAALYTSG----HLLCGGVLIHPLWVLTAAHCKKP----------NLQVFLGKHNLRQRE--SSQE   64 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEEEETTEEEECGGGCCT----------TCEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEEECC----cEEEEEEEEeCCEEEECeecccc----------ccceeeceeeecccC--ccce
Confidence            7999999999999999998653    78999999999999999999864          357899988876554  5668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.+.++++||+|+..+..||||||+|++++.+++.++|||||......       + ..|. ..||+......   ...
T Consensus        65 ~~~~~~~~~~p~y~~~~~~~diAll~l~~~~~~~~~v~pi~l~~~~~~~-------~-~~~~-~~Gwg~~~~~~---~~~  132 (221)
T d1lo6a_          65 QSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAN-------T-TSCH-ILGWGKTADGD---FPD  132 (221)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTTCC-------C-CEEE-EEESSCCTTSS---CCS
T ss_pred             eeeccccccCCCcccccccceeEEeecccccceeeeEEeccccccCCcc-------c-ceEE-EEecccccCCC---CCc
Confidence            8899999999999999999999999999999999999999999766522       1 2333 45666432211   123


Q ss_pred             eeeEEEEeecCeeeccccce--------EE--ecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcce-ecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTKHY--------VV--FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLR-VCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~--------~~--~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~-~c~~~~~  248 (363)
                      .++...+.+.+.+.|...+.        +.  .......|.||+||||++..    +|+||+|++     .. +|....+
T Consensus       133 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~----~l~Gi~S~g-----~~~c~~~~~p  203 (221)
T d1lo6a_         133 TIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWG-----NIPCGSKEKP  203 (221)
T ss_dssp             BCEEEEEEEECHHHHHHHSTTTCCTTEEEEECTTTCCBCCTTTTTCEEEETT----EEEEEEEEC-----CSSCCCSSSC
T ss_pred             cceEEEEEEecHHHHHHHcCCCccCCceeeeccccCCCCccCCCCCcEEECC----EEEEEEEEc-----cCCCCCCCCC
Confidence            45567777788888874321        11  12345689999999999854    899999984     33 3455668


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       204 ~vyt~v~~  211 (221)
T d1lo6a_         204 GVYTNVCR  211 (221)
T ss_dssp             EEEEEGGG
T ss_pred             eEEEEHHH
Confidence            89998865

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=267.72  Aligned_cols=215  Identities=26%  Similarity=0.426  Sum_probs=159.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+.... ...++|+||||+++||||||||+....     ....+.+..+........  ...+
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~-~~~~~C~GtLIs~~~VLTaAhCv~~~~-----~~~~~~~~~~~~~~~~~~--~~~~   72 (237)
T d1xx9a_           1 IVGGTASVRGEWPWQVTLHTTSP-TQRHLCGGSIIGNQWILTAAHCFYGVE-----SPKILRVYSGILNQSEIK--EDTS   72 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESS-SEEEEEEEEEEETTEEEECGGGGTTCS-----CGGGEEEEESCSBGGGCC--TTCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCC-CccEEEEEEEEeCCEEEeCeEeeeccc-----Cccceeeecccccccccc--cceE
Confidence            79999999999999999987653 346899999999999999999997643     345677777776655444  6678


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|.+++.||+|+.....+|||||+|++|+.+.+.++|||++.......      ....+. ..||+......  ....
T Consensus        73 ~~~v~~~~~h~~~~~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~~~~------~~~~~~-~~G~~~~~~~~--~~~~  143 (237)
T d1xx9a_          73 FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNV------IYTDCW-VTGWGYRKLRD--KIQN  143 (237)
T ss_dssp             CEEEEEEEECTTCSCTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTCTTC------CCSCEE-EEESCCSSTTC--CCCS
T ss_pred             EEEeeEEEEecccccccccceeEEEEeccccccccccceEEecccccccc------cccccE-EEEeecccccc--cCCC
Confidence            89999999999999999999999999999999999999999987765211      111222 23443221111  1122


Q ss_pred             eeeEEEEeecCeeecccc---------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTK---------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~---------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .+....+.+.+.+.|...         ..+..  ......|.||+||||++..+++|+|+||+|++     ..+|....+
T Consensus       144 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g-----~~~~~~~~p  218 (237)
T d1xx9a_         144 TLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWG-----EGCAQRERP  218 (237)
T ss_dssp             BCEEEECCEECHHHHHHHTTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEE-----SSSSCTTCC
T ss_pred             ccEEEEEEEeCHHHHhhhhcCCCCCCceEEEecCCCCcccccCCccceeEEecCCEEEEEEEEEeC-----CCCCCCCCC
Confidence            344566677777778532         22332  22357999999999999999999999999984     345566778


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       219 ~vft~v~~  226 (237)
T d1xx9a_         219 GVYTNVVE  226 (237)
T ss_dssp             EEEECGGG
T ss_pred             EEEEEhHH
Confidence            89998765

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=260.18  Aligned_cols=207  Identities=25%  Similarity=0.391  Sum_probs=152.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.++||||+|+|+...    .++|+||||+++||||||||+...      ....+.+..+..+.....  ...+
T Consensus         1 I~gG~~~~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~~------~~~~~~v~~~~~~~~~~~--~~~~   68 (228)
T d1bioa_           1 ILGGREAEAHARPYMASVQLNG----AHLCGGVLVAEQWVLSAAHCLEDA------ADGKVQVLLGAHSLSQPE--PSKR   68 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEEEETTEEEECGGGGGGC------SSSCEEEEESCSBSSSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----cEEEEEEEEeCCEEEECceeeecc------ccceeeeeccccccccCC--ccee
Confidence            7999999999999999998754    789999999999999999999864      345577777777655443  5667


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...|.+++.||.|+..+..||||||+|++|+.+++.++|+|||......     ..+. .+. ..||+.....+..  ..
T Consensus        69 ~~~v~~i~~~~~y~~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~~~-----~~~~-~~~-~~g~~~~~~~~~~--~~  139 (228)
T d1bioa_          69 LYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDV-----APGT-LCD-VAGWGIVNHAGRR--PD  139 (228)
T ss_dssp             EEEEEEEEECTTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCC-----CTTC-EEE-EEESSCCSTTCCC--CS
T ss_pred             eccceeeeeeecccCCCcccceehhhccccceeeeEEeeeccccccccc-----ccCc-eEE-EecceeecCCCCC--CC
Confidence            8899999999999999999999999999999999999999998765521     1111 111 2344432221111  12


Q ss_pred             eeeEEEEeecCeeeccccc----------eEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceec-CCCcc
Q psy15989        180 GIVSITVARDGLRVCDTKH----------YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC-DTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~----------~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c-~~~~~  248 (363)
                      .++...+.+.+...|....          ........+.|.||+||||++.    |+|+||+|+     +...| ....+
T Consensus       140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsG~Pl~~~----~~LvGi~S~-----g~~~c~~~~~p  210 (228)
T d1bioa_         140 SLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCG----GVLEGVVTS-----GSRVCGNRKKP  210 (228)
T ss_dssp             BCEEEEEEEECHHHHHSTTTTTTCCCTTEEEECCSSCBCCTTTTTCEEEET----TEEEEEECC-----SCCCSSCTTSC
T ss_pred             cceEEEEEEeCHHHHhhhhcccccccccceeecccCCCcccCCcCccEEEc----CEEEEEEEE-----CCCCCCCCCCC
Confidence            3445566666666665322          1334455788999999999984    599999998     44455 35667


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       211 ~v~t~v~~  218 (228)
T d1bioa_         211 GIYTRVAS  218 (228)
T ss_dssp             EEEEEGGG
T ss_pred             EEEEEHHH
Confidence            89998854

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=100.00  E-value=1.1e-36  Score=260.98  Aligned_cols=205  Identities=24%  Similarity=0.348  Sum_probs=155.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.++||||+|+|+...    .++|+||||+++||||||||+..        .....+++|........  ...+
T Consensus         1 i~gG~~a~~~~~Pw~V~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~--------~~~~~~~~g~~~~~~~~--~~~~   66 (226)
T d1azza_           1 IVGGVEAVPNSWPHQAALFIDD----MYFCGGSLISPEWILTAAHCMDG--------AGFVDVVLGAHNIREDE--ATQV   66 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----TEEEEEEEEETTEEEECHHHHTT--------CSCEEEEESCSBSSSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----cEEEEEEEeeCCEEEEChhhccC--------CcceEEEeccceeccCC--cceE
Confidence            7899999999999999998753    78999999999999999999964        34577888888876554  6668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...|.++++||+|+.....||||||+|++|+.+++.++||||+.........        +. .+||+........ ...
T Consensus        67 ~~~v~~i~~~~~y~~~~~~~diAll~l~~~~~~~~~~~pi~l~~~~~~~~~~--------~~-~~g~g~~~~~~~~-~~~  136 (226)
T d1azza_          67 TIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTV--------VT-PTGWGLPSDSALG-ISD  136 (226)
T ss_dssp             EEEECCEEECTTCBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCCCTTCE--------EE-EEESSCSSTTCSS-SCS
T ss_pred             EEEeeeeeeccccccccccchhhhhhcCCccceeeccccccccccccccccc--------ee-eecccccCCCcCc-ccc
Confidence            8999999999999999999999999999999999999999999877632211        11 2344432211110 122


Q ss_pred             eeeEEEEeecCeeeccccc--------eEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEE
Q psy15989        180 GIVSITVARDGLRVCDTKH--------YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF  251 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~--------~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~  251 (363)
                      .+....+.+++.+.|...+        .+......+.|.||+||||++.    ++|+||+|++.    ...|....+.+|
T Consensus       137 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~g~----~~~~~~~~p~v~  208 (226)
T d1azza_         137 VLRQVDVPIMSNADCDAVYGIVTDGNICIDSTGGKGTCNGDSGGPLNYN----GLTYGITSFGA----AAGCEAGYPDAF  208 (226)
T ss_dssp             BCEECCEEEECHHHHHHHHSCCCTTEEEECCTTTCBCCTTCTTCEEEET----TEEEEEEEEEE----TTCTTSCCCEEE
T ss_pred             EeEEEEEEEEeHHHhhhhhCcccccceeccccCCCccccCCcCCCEEEc----CEEEEEEEEeC----CCCCCCCCCEEE
Confidence            3556677777888886422        1233445789999999999874    59999999953    123566678899


Q ss_pred             EeeeE
Q psy15989        252 TDVKR  256 (363)
Q Consensus       252 ~~V~~  256 (363)
                      ++|..
T Consensus       209 t~v~~  213 (226)
T d1azza_         209 TRVTY  213 (226)
T ss_dssp             EESGG
T ss_pred             EEHHH
Confidence            98765

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-36  Score=256.53  Aligned_cols=203  Identities=23%  Similarity=0.301  Sum_probs=152.4

Q ss_pred             cCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceee
Q psy15989         22 YGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNK  101 (363)
Q Consensus        22 gG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~  101 (363)
                      ||++|.++||||+|+|+........++|+|+||+++||||||||+..          .+.|++|.+++....  ...+..
T Consensus         1 GG~~a~~~e~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhCv~~----------~~~v~~g~~~~~~~~--~~~~~~   68 (224)
T d1nn6a_           1 GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----------SITVTLGAHNITEEE--DTWQKL   68 (224)
T ss_dssp             CCEECCTTSSTTEEEEEEECTTSCEEEEEEEEEETTEEEECGGGCCS----------EEEEEESCSBTTSCC--TTCEEE
T ss_pred             CCcCCcCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEehhhcccc----------cceEEeccccccccc--ccccce
Confidence            89999999999999998776555678999999999999999999953          478999999887665  556889


Q ss_pred             eeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeee
Q psy15989        102 QVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGI  181 (363)
Q Consensus       102 ~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l  181 (363)
                      .+.+++.||.|+..+..+|||||+|.+|+.++..++|+|++......      .....|. ..||+.....+.  ....+
T Consensus        69 ~~~~~~~~p~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~------~~~~~~~-~~g~~~~~~~~~--~~~~~  139 (224)
T d1nn6a_          69 EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFV------PPGRMCR-VAGWGRTGVLKP--GSDTL  139 (224)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCCCC------CTTCEEE-EEECCCCSSSCC--CCSBC
T ss_pred             eEEEEEEeecccccccccchhhhcccCCccccccccccccccccccc------CCCceee-eccccccccCCC--ccccc
Confidence            99999999999999999999999999999999999999998766521      1111222 233332211111  12345


Q ss_pred             eEEEEeecCeeeccccce-------EEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEE
Q psy15989        182 VSITVARDGLRVCDTKHY-------VVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFT  252 (363)
Q Consensus       182 ~~~~~~~~~~~~C~~~~~-------~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~  252 (363)
                      +...+.+.+...|...+.       +...  ...+.|.||+||||++.    |+|+||+|++       .|....+.+|+
T Consensus       140 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~c~gDsG~PL~~~----~~l~GI~s~g-------~~~~~~p~vyt  208 (224)
T d1nn6a_         140 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVSYG-------RSDAKPPAVFT  208 (224)
T ss_dssp             EEEEEEBCCGGGGTTSTTCCTTTEEEECCTTTC--CCCCCTTCEEEET----TEEEEEEEEC-------CTTCCSCEEEE
T ss_pred             eEEEEEecCHHHHhhhcccccceeeeccCccccccccCCCccceEEEC----CEEEEEEEEC-------CCCCCCCeEEE
Confidence            667778888999964221       2222  23568999999999984    5999999984       23345678898


Q ss_pred             eeeE
Q psy15989        253 DVKR  256 (363)
Q Consensus       253 ~V~~  256 (363)
                      +|..
T Consensus       209 ~v~~  212 (224)
T d1nn6a_         209 RISH  212 (224)
T ss_dssp             EHHH
T ss_pred             EHHH
Confidence            8765

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=265.76  Aligned_cols=213  Identities=27%  Similarity=0.427  Sum_probs=147.0

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|++++|||+|+|+...   ..++|+||||+++||||||||+.+.        ....+..........  ....+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~---~~~~C~GtlIs~~~VLTaAhCv~~~--------~~~~~~~~~~~~~~~--~~~~~   67 (233)
T d2p3ub1           1 IVGGQECKDGECPWQALLINEE---NEGFCGGTILSEFYILTAAHCLYQA--------KRFKVRVGDRNTEQE--EGGEA   67 (233)
T ss_dssp             CBSSEECCTTSCTTEEEEECTT---SCEEEEEEECSSSEEEECGGGGGSC--------SSCEEEESCSBTTSC--CSCCE
T ss_pred             CCCCEECCCCCCCcEEEEEecC---CCeEEEEEEEeCCEEEECceecccc--------ccccccccccccccc--CCCce
Confidence            7999999999999999997643   2689999999999999999999753        233444333333222  25668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.++++++||+|+.....+|||||+|++|+.|+++++|+|||.........   .....+. ..+|+.....+.  ...
T Consensus        68 ~~~~~~i~~h~~~~~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~--~~~  141 (233)
T d2p3ub1          68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTL---MTQKTGI-VSGFGRTHEKGR--QST  141 (233)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHT---TTSSEEE-EEESCBSSTTSC--BCS
T ss_pred             eecceeEEEeecccccccccceeeeecccceeecccccccccCCcccccccc---cccceEE-EecCCccccCCC--ccc
Confidence            8899999999999999999999999999999999999999998653210000   0000111 111111110000  011


Q ss_pred             eeeEEEEeecCeeeccccce--------EEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKHY--------VVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~--------~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .+....+.+.+...|...+.        +..  ......|.||+||||++..+++|+|+||+|++     ..++....+.
T Consensus       142 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~L~Gv~s~g-----~~c~~~~~p~  216 (233)
T d2p3ub1         142 RLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWG-----EGCARKGKYG  216 (233)
T ss_dssp             BCEEEEEEBCCHHHHHHHCSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEEC-----SSSSCTTCCE
T ss_pred             cccccccccccchhhhcccCceEeecceeeecccccCCCcCCCcccccEEecCCeEEEEEEEEEC-----CCCCCCCCCE
Confidence            23344555666777763221        111  23457899999999999999999999999994     4444556788


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       217 vyt~v~~  223 (233)
T d2p3ub1         217 IYTKVTA  223 (233)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            9998865

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-36  Score=259.49  Aligned_cols=204  Identities=24%  Similarity=0.311  Sum_probs=150.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.++||||+|+|..... +..++|+||||+++||||||||+..          ...+++|........  ...+
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~-~~~~~C~GtLIs~~~VLTaAhC~~~----------~~~~~~~~~~~~~~~--~~~~   67 (224)
T d1eufa_           1 IIGGHEAKPHSRPYMAFLLFKTS-GKSHICGGFLVREDFVLTAAHCLGS----------SINVTLGAHNIMERE--RTQQ   67 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS-SSEEEEEEEEEETTEEEECGGGCCE----------EEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcC-CCcEEEEEEEEcCCEEEeeceeccc----------ccceeeeeeeecccC--CCcE
Confidence            79999999999999999976643 3478999999999999999999864          356777877765544  5668


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+.....||||||+|++|+.|++.++|+|++......     ..+. .+. ..||+......  ....
T Consensus        68 ~~~V~~i~~hp~~~~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~~~-----~~~~-~~~-~~g~g~~~~~~--~~~~  138 (224)
T d1eufa_          68 VIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEV-----KPGM-MCS-VAGWGRLGVNM--PSTD  138 (224)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCC-----CTTC-EEE-EEESCBSSTTC--CBCS
T ss_pred             EEEEEEEEECCccccccccccceeeeccceeEEeeeEeeeeeecccccc-----cCCc-eEE-Eecccceeccc--cccc
Confidence            8999999999999999999999999999999999999999998776521     1111 111 23444322111  1122


Q ss_pred             eeeEEEEeecCeeeccccce-------EE---ecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKHY-------VV---FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~-------~~---~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .+....+...+...|...+.       ..   .......|.+|+||||++.    ++|+||+|++     . .| ...+.
T Consensus       139 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~c~~dsGgpl~~~----~~l~Gi~s~g-----~-~~-~~~p~  207 (224)
T d1eufa_         139 KLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPLVCN----GVAQGIVSYG-----R-ND-GTTPD  207 (224)
T ss_dssp             BCEEEEEEBCCTHHHHTTCTTCCTTTEEEESCTTSCCBCCTTCTTCEEEET----TEEEEEEEEC-----C-TT-CCSCE
T ss_pred             cceeeeeccCCHHHHHHHhccccccceeeeeccccccccccCCCCCeEEEc----CEEEEEEEEc-----C-CC-CCCCe
Confidence            34456677778888864332       11   1234678999999999984    4999999984     2 23 34678


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       208 vft~V~~  214 (224)
T d1eufa_         208 VYTRISS  214 (224)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            8998765

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=257.90  Aligned_cols=206  Identities=22%  Similarity=0.338  Sum_probs=153.9

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+..+    .++|+||||+++||||||||+...      +.....+.++...+....  ....
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~~------~~~~~~~~~~~~~~~~~~--~~~~   68 (225)
T d1a7sa_           1 IVGGRKARPRQFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ------NPGVSTVVLGAYDLRRRE--RQSR   68 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGC----------CCSEEEEESCSSTTSCC--TTTC
T ss_pred             CCCCEECCCCCCCcEEEEEECC----cEEEEEEEEcCCEEEECeeeeeec------cccceeeEEeeeeccccc--cccc
Confidence            7999999999999999998653    789999999999999999999864      345677888887766544  5556


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...+..++.|+.|++....||||||+|++|+.+++.++|+||+......      .....+. .+||+.......  ...
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~~~------~~~~~~~-~~g~~~~~~~~~--~~~  139 (225)
T d1a7sa_          69 QTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATV------EAGTRCQ-VAGWGSQRSGGR--LSR  139 (225)
T ss_dssp             EEEEEEEEECSSCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCC------CTTCEEE-EEESCCSSTTCC--CCS
T ss_pred             ceeeeeeeeeeeccccccccccchhhcCCcccccccceeEEeecccccc------CCCceeE-eccccccccccc--ccc
Confidence            7778899999999999999999999999999999999999997665511      1112232 455554322111  122


Q ss_pred             eeeEEEEeecCeeeccccceEE--ecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        180 GIVSITVARDGLRVCDTKHYVV--FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      .+....+.+.+.+.|.......  .....+.|.||+||||+++    |+|+||+|++     ...|. ..+.+|++|..
T Consensus       140 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~~-----~~~c~-~~p~v~t~v~~  208 (225)
T d1a7sa_         140 FPRFVNVTVTPEDQCRPNNVCTGVLTRRGGICNGDGGTPLVCE----GLAHGVASFS-----LGPCG-RGPDFFTRVAL  208 (225)
T ss_dssp             SCEEEEEEECCGGGSCTTEEEEECSSSSCBCCTTCTTCEEEET----TEEEEEEEEE-----CSSTT-SSCEEEEEGGG
T ss_pred             ceeEEEEEEeehhhcccccceeeecccccccccCCCCCCEEEe----CEEEEEEEEC-----CCCCC-CCCCEEEEHHH
Confidence            3455667778888998665433  3346789999999999984    5999999995     33464 45788998754

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-36  Score=258.66  Aligned_cols=204  Identities=24%  Similarity=0.387  Sum_probs=151.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.++||||||+|+...    .++|+||||+++||||||||+.+.         ...+.++..+.....  ...+
T Consensus         1 ivgG~~a~~~e~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~~---------~~~~~~~~~~~~~~~--~~~~   65 (232)
T d1orfa_           1 IIGGNEVTPHSRPYMVLLSLDR----KTICAGALIAKDWVLTAAHCNLNK---------RSQVILGAHSITREE--PTKQ   65 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEECSS----SCEEEEEEEETTEEEECTTCCCCT---------TCEEEESCSBSSSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----CEEEEEEEecCCEEEEChhhcCCC---------Ccceeeeeeeccccc--cccc
Confidence            7999999999999999998654    688999999999999999999753         233444555444433  5667


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...++.++.||+|+..+..||||||+|++|+.+++.++|||||.....      ......|. .+||+.....+.  ...
T Consensus        66 ~~~~~~i~~hp~y~~~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~~------~~~~~~~~-~~g~g~~~~~~~--~~~  136 (232)
T d1orfa_          66 IMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDD------VKPGTMCQ-VAGWGRTHNSAS--WSD  136 (232)
T ss_dssp             EECEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCC------CCTTCEEE-EEESSCSSSSSC--CCS
T ss_pred             cceEEEEEecccccccccCcceeEeeeccceeeeeeEeeeeecccccc------cccCceee-eccccccCCccc--CCh
Confidence            888999999999999999999999999999999999999999876651      11122333 456654332211  123


Q ss_pred             eeeEEEEeecCeeecccc------------ceEEecC--CCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-
Q psy15989        180 GIVSITVARDGLRVCDTK------------HYVVFTD--VANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-  244 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~------------~~~~~~~--~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-  244 (363)
                      .++...+.+.+.+.|...            ..|....  ..+.|.||+||||+++    ++|+||+|++.    ...|. 
T Consensus       137 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~----~~l~GI~S~g~----~~~c~~  208 (232)
T d1orfa_         137 TLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE----GVFRGVTSFGL----ENKCGD  208 (232)
T ss_dssp             BCEEEEEEEECHHHHTSTTTTTTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEET----TEEEEEEEECC----TTCTTC
T ss_pred             hheEEEeecCCHHHHhhhhhcccCccccCceEEeccCCCCcccccccCCCeEEEc----CEEEEEEEEEC----CCCCCC
Confidence            456777888888899642            2233332  3578999999999985    49999999942    23464 


Q ss_pred             CCcceEEEeee
Q psy15989        245 TKHYVVFTDVK  255 (363)
Q Consensus       245 ~~~~~v~~~V~  255 (363)
                      ...+.+|++|.
T Consensus       209 ~~~p~vyt~Vs  219 (232)
T d1orfa_         209 PRGPGVYILLS  219 (232)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCCcEEEEee
Confidence            35688999985

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=257.78  Aligned_cols=210  Identities=25%  Similarity=0.309  Sum_probs=149.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.++||||+|+|+.... ...++|+||||+++||||||||+...      ....+.|++|.......   ...+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~-~~~~~C~GtLIs~~~VLTaAhCv~~~------~~~~~~v~~g~~~~~~~---~~~~   70 (221)
T d1fuja_           1 IVGGHEAQPHSRPYMASLQMRGN-PGSHFCGGTLIHPSFVLTAAHCLRDI------PQRLVNVVLGAHNVRTQ---EPTQ   70 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTB-TTCCCEEEEEEETTEEEECGGGGSSS------CGGGEEEEESCSBTTSC---CTTC
T ss_pred             CCCCEECCCCCCCcEEEEEEecC-CCCEEEEEEEEeCCEEEEeeEEEeec------CCccceeeeeccccccc---cccc
Confidence            78999999999999999986532 23688999999999999999999764      34678899998876543   4457


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.+.+++.||.|+..+..||||||+|++|+.++++++|||||..+...     ..+. .+. ..||+.....+..  ..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~diAll~L~~~~~~~~~v~picl~~~~~~~-----~~~~-~~~-~~G~~~~~~~~~~--~~  141 (221)
T d1fuja_          71 QHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPV-----PHGT-QCL-AMGWGRVGAHDPP--AQ  141 (221)
T ss_dssp             EEEEEEEEEECCCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCC-----CTTC-EEE-EEESSBSCSSSCB--CS
T ss_pred             eeeeeeeEEEeeecCCCCccEEEEEEccccccccceEEEEEeccccccc-----CCCc-eEE-Eeccccccccccc--Cc
Confidence            8889999999999999999999999999999999999999999876521     1111 111 3455433222111  11


Q ss_pred             eeeEEEEeecCeeeccccceE-EecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        180 GIVSITVARDGLRVCDTKHYV-VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      .+....+.+.+...|.....+ ......+.|.||+||||++.    ++|+||+|++.    ..+|....+.+|++|..
T Consensus       142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gd~G~pl~~~----~~l~Gi~s~~~----~gc~~~~~p~vyt~v~~  211 (221)
T d1fuja_         142 VLQELNVTVVTFFCRPHNICTFVPRRKAGICFGDSGGPLICD----GIIQGIDSFVI----WGCATRLFPDFFTRVAL  211 (221)
T ss_dssp             BCEEEEEEEECTTCCTTEEEEECSSSSCBCCTTCTTCEEEET----TEEEEEEEECS----SSTTCSSSCEEEEEGGG
T ss_pred             cceeeeeeeeeeccccccceeccccCCCceeCCccCCCEEEe----CEEEEEEEEEE----CCCCCCCCCeEEEEHHH
Confidence            122233333333333332222 23345789999999999985    49999999942    12344566889998765

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=266.07  Aligned_cols=217  Identities=26%  Similarity=0.389  Sum_probs=141.6

Q ss_pred             CCccccC-CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEece
Q psy15989          8 CGTVVYN-KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGK   86 (363)
Q Consensus         8 CG~~~~~-~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~   86 (363)
                      ||+...+ ..++||+||++|.+++|||+|+|.       .++|+||||+++||||||||+.+.        ....|++|.
T Consensus         1 cg~~~~~~~~~~ri~gG~~~~~~~~Pw~v~l~-------~~~C~GtLIs~~~VLTaAhCv~~~--------~~~~v~~g~   65 (259)
T d1elva1           1 CGVPREPFEEKQRIIGGSDADIKNFPWQVFFD-------NPWAGGALINEYWVLTAAHVVEGN--------REPTMYVGS   65 (259)
T ss_dssp             CSCCSSCC-----CBTCEECCGGGSTTEEEEE-------TTEEEEEEEETTEEEECHHHHTTC--------SSCCEECSC
T ss_pred             CcCCCCCCCCCCceECCEECCCCCcceEEEeC-------CceEEEEEEeCCEEEecccccccc--------cceeEEeee
Confidence            8875433 566799999999999999999994       468999999999999999999753        345677887


Q ss_pred             ecccccCCCCCceeeeeeEEEECCCCCC-------CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceee
Q psy15989         87 YHQHQFSDEGGVQNKQVKRVHIYPTFNS-------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSV  159 (363)
Q Consensus        87 ~~~~~~~~~~~~~~~~V~~i~~hp~y~~-------~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~  159 (363)
                      .++.... ....+.+.|.++++||+|..       .+..||||||||++|+.+++.|+|||++.......    ......
T Consensus        66 ~~~~~~~-~~~~~~~~v~~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~~~----~~~~~~  140 (259)
T d1elva1          66 TSVQTSR-LAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYN----LMDGDL  140 (259)
T ss_dssp             SBCC--------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGC----CCTTCE
T ss_pred             eeeeccc-ccccccccceeEeecceeecccccccCCCcccceeeeecccceehhcccCceeeccCccccc----cccceE
Confidence            7665432 24457889999999999953       45679999999999999999999999986654110    001112


Q ss_pred             ecCCCCccceEEecCeeEEeeeeEEEEeecCeeeccccc-----------------eEE-ecCCCccCcccccceeEEEE
Q psy15989        160 CNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH-----------------YVV-FTDVANVCNGDSGGGMVFKI  221 (363)
Q Consensus       160 c~g~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~-----------------~~~-~~~~~~~C~gdsGgpl~~~~  221 (363)
                      |. ..||+........   ..+....+...+...|...+                 .+. .....+.|.||+||||++..
T Consensus       141 ~~-~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gDsGgPl~~~~  216 (259)
T d1elva1         141 GL-ISGWGRTEKRDRA---VRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQD  216 (259)
T ss_dssp             EE-EEESCCCSSCSSC---SBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECSTTCBCCTTCTTCEEEEEC
T ss_pred             EE-Eeccccccccccc---cccccceeeEechhhceeeeecccccccccceeecceeeccCCCCCccCCCCcCCeEEEEe
Confidence            22 3334332211111   11222333333333332111                 112 23446889999999999875


Q ss_pred             ---cCccEEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        222 ---DSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       222 ---~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                         .++|+|+||+|++     . .|+  .+.+|++|..
T Consensus       217 ~~~~~~~~l~Gi~S~~-----~-~c~--~p~vft~V~~  246 (259)
T d1elva1         217 PNDKTKFYAAGLVSWG-----P-QCG--TYGLYTRVKN  246 (259)
T ss_dssp             SSCTTCEEEEEEEEEC-----S-STT--SEEEEEEGGG
T ss_pred             cCCCcEEEEEEEEEeC-----C-CCC--CceEEeEHHH
Confidence               3579999999983     2 353  4778988865

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=264.51  Aligned_cols=215  Identities=27%  Similarity=0.448  Sum_probs=148.4

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+..+    .++|+||||+++||||||||+....     ....+.+.++...+....  ....
T Consensus         1 iigG~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~-----~~~~~~v~~~~~~~~~~~--~~~~   69 (254)
T d2bz6h1           1 IVGGKVCPKGECPWQVLLLVNG----AQLCGGTLINTIWVVSAAHCFDKIK-----NWRNLIAVLGEHDLSEHD--GDEQ   69 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEECSSSEEEECGGGGTTCS-----CGGGEEEEESCCBTTCCC--SCCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----CEEEEEEEeCCCEEEECcccccCCC-----Ccccceeeccceeecccc--ccce
Confidence            7999999999999999998754    7899999999999999999997643     345678888888776554  5567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...+..++.|+.|+.....||||||||++|+.+++.++|+|||........   ......+. ..||+........  ..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~--~~  143 (254)
T d2bz6h1          70 SRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERT---LAFVRFSL-VSGWGQLLDRGAT--AL  143 (254)
T ss_dssp             EEEEEEEEEETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHT---GGGCCEEE-EEESCBSSTTSCB--CS
T ss_pred             eeeeeeeeecccccccccccceeEEEecCcccccceEeeeecCcccccccc---ccCCceEE-EeccCccCCCCcc--cc
Confidence            888999999999999999999999999999999999999999864321100   00011111 2233322111100  00


Q ss_pred             eeeEEEEeecCeee-c------------cccceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC
Q psy15989        180 GIVSITVARDGLRV-C------------DTKHYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD  244 (363)
Q Consensus       180 ~l~~~~~~~~~~~~-C------------~~~~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~  244 (363)
                      ........+..... |            .....+..  ......|.||+||||++..+++|+|+||+|+     +..+|.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~~~~~~lvGi~S~-----g~~c~~  218 (254)
T d2bz6h1         144 ELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSW-----GQGCAT  218 (254)
T ss_dssp             BCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEE-----CSSSSC
T ss_pred             cceeeeecccchhhhhhhhhcccccccccccceeeeccCCCcccccCccccceEEccCCeEEEEEEEEe-----CCCCCC
Confidence            00111111111111 1            11111111  1245789999999999999999999999999     444555


Q ss_pred             CCcceEEEeeeE
Q psy15989        245 TKHYVVFTDVKR  256 (363)
Q Consensus       245 ~~~~~v~~~V~~  256 (363)
                      .+.+.+|++|..
T Consensus       219 ~~~p~vytrv~~  230 (254)
T d2bz6h1         219 VGHFGVYTRVSQ  230 (254)
T ss_dssp             TTCCEEEEEGGG
T ss_pred             CCCCEEEEEHHH
Confidence            677889998765

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=267.30  Aligned_cols=217  Identities=21%  Similarity=0.317  Sum_probs=134.4

Q ss_pred             eecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeee
Q psy15989         24 QKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQV  103 (363)
Q Consensus        24 ~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V  103 (363)
                      ..++.++|||||+|+........++|+||||+++||||||||+....     ....+.|++|...          +.+.|
T Consensus         9 ~~t~~~e~PW~v~i~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-----~~~~~~v~~g~~~----------~~~~v   73 (287)
T d1rrka1           9 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD-----KEHSIKVSVGGEK----------RDLEI   73 (287)
T ss_dssp             TCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTC-----CGGGEEEEETTCS----------SCEEE
T ss_pred             CCCCcCCCCCEEEEEEEECCCCcEEEEEEEecCCEEEEChhheecCC-----CcceEEEEeCCee----------ceeee
Confidence            44778999999999876544457899999999999999999996532     3456889888642          34679


Q ss_pred             eEEEECCCCCC---------CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeec-----CCCCccce
Q psy15989        104 KRVHIYPTFNS---------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCN-----GDSGGGMV  169 (363)
Q Consensus       104 ~~i~~hp~y~~---------~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~-----g~~G~~~~  169 (363)
                      +++++||+|+.         ..+.||||||||++|++|+++|+|||||.......... ......+.     ...+++..
T Consensus        74 ~~i~~Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  152 (287)
T d1rrka1          74 EVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR-LPPTTTCQQQKEELLPAQDIK  152 (287)
T ss_dssp             EEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTT-CCTTCCHHHHHHHHSCSSEEE
T ss_pred             EEEEecCCccccccccccCCCcccccEEEEecccCccccceEEEEecCCccccccccc-cCCcceEeecCceeecCCCcc
Confidence            99999999974         34569999999999999999999999986543100000 00000000     01111111


Q ss_pred             EEecCeeEEeeeeEEEEeecCeee---cc--------------------ccceEEec----CCCccCcccccceeEEEEc
Q psy15989        170 FKIDSAWYLRGIVSITVARDGLRV---CD--------------------TKHYVVFT----DVANVCNGDSGGGMVFKID  222 (363)
Q Consensus       170 ~~~~~~~~~~~l~~~~~~~~~~~~---C~--------------------~~~~~~~~----~~~~~C~gdsGgpl~~~~~  222 (363)
                      .... ......+....+.+.+...   |.                    ..+.|+..    ...+.|.|||||||++..+
T Consensus       153 ~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~~  231 (287)
T d1rrka1         153 ALFV-SEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR  231 (287)
T ss_dssp             EEEE-EESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEET
T ss_pred             cccc-ccCCceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEecC
Confidence            1100 0001112222332222211   11                    11233322    2356799999999999999


Q ss_pred             CccEEEEEEEEEEecC-----cceecCCCcceEEEeeeEE
Q psy15989        223 SAWYLRGIVSITVARD-----GLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       223 ~~~~l~Gi~s~~~~~~-----g~~~c~~~~~~v~~~V~~i  257 (363)
                      ++|+|+||+||+....     ....+....+.+|++|..+
T Consensus       232 ~~~~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y  271 (287)
T d1rrka1         232 SRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV  271 (287)
T ss_dssp             TEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGG
T ss_pred             CeEEEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHH
Confidence            9999999999964321     1112334557788887653

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=100.00  E-value=9.6e-36  Score=255.83  Aligned_cols=207  Identities=26%  Similarity=0.353  Sum_probs=149.0

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.++||||+|+|+........++|+||||+++||||||||+..        ...+.+++|..+..     ...+
T Consensus         1 i~~G~~a~~ge~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~--------~~~~~v~~~~~~~~-----~~~~   67 (230)
T d2hlca_           1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD--------AVSVVVYLGSAVQY-----EGEA   67 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTT--------EEEEEEEESCSBTT-----CCSE
T ss_pred             CCCCEECCCCCCCCEEEEEEEecCCCeeEEEEEEEeCCEEEEeeecccc--------cccceeecccceec-----cccc
Confidence            7999999999999999998765555688999999999999999999963        45678888887654     4568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|+++++||+|+.....||||||+|+++ .+++.++||||+.......   ...+ ..+. ..||+.....     ..
T Consensus        68 ~~~v~~i~~hp~y~~~~~~~DiALl~L~~~-~~~~~v~pi~l~~~~~~~~---~~~~-~~~~-~~g~~~~~~~-----~~  136 (230)
T d2hlca_          68 VVNSERIISHSMFNPDTYLNDVALIKIPHV-EYTDNIQPIRLPSGEELNN---KFEN-IWAT-VSGWGQSNTD-----TV  136 (230)
T ss_dssp             EEECSEEEECTTCBTTTTBTCCEEEECSCC-CCCSSCCCCBCCCGGGGGC---CCTT-CEEE-EEESSCCSSC-----CC
T ss_pred             ceeeEeEEeeecccccccccceeEEEeecc-cccccceeEEeeccccccc---cccc-eeEE-EEeecccccc-----ch
Confidence            999999999999999999999999999876 6888999999986544110   0001 1111 2333321111     11


Q ss_pred             eeeEEEEeecCeeeccccc---------eEEe-cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKH---------YVVF-TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~---------~~~~-~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .++...+...+...|...+         .+.. ......|.||+|||+++  +++|+|+||+|+..    ...|+...+.
T Consensus       137 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgp~~~--~~~~~l~Gi~S~~~----~~~~~~~~p~  210 (230)
T d2hlca_         137 ILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPFVL--SDKNLLIGVVSFVS----GAGCESGKPV  210 (230)
T ss_dssp             BCEEEEEEEECHHHHHTTSCTTSSCTTEEEECCTTSCBCCTTCTTCEEEE--GGGTEEEEEEEECC----TTCTTSCCCE
T ss_pred             hhheeeeccccchhhhhccccccccccceEeccccCccccccccCCCeEE--CCCeEEEEEEEEeC----CCCCCCCCCe
Confidence            2334455555566675322         1222 23357899999999997  45789999999842    2346777788


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       211 vyt~V~~  217 (230)
T d2hlca_         211 GFSRVTS  217 (230)
T ss_dssp             EEEEGGG
T ss_pred             EEEEhHH
Confidence            9998865

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-36  Score=254.04  Aligned_cols=205  Identities=22%  Similarity=0.347  Sum_probs=150.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.++||||+|+|+...    .++|+||||+++||||||||+...      +...+.+.++..+....   ....
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~----~~~C~G~LIs~~~VLTaAhC~~~~------~~~~~~v~~~~~~~~~~---~~~~   67 (218)
T d2z7fe1           1 IVGGRRARPHAWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV------NVRAVRVVLGAHNLSRR---EPTR   67 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECHHHHTTS------CGGGCEEEESCSBTTSC---CTTC
T ss_pred             CCCCEECCCCCCCcEEEEEECC----CeEEEEEEEeCCEEEECeEecccc------cccceeeeeeecccccc---ccce
Confidence            7899999999999999998754    789999999999999999999764      34567888888776543   3446


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.+..++.|+.|++.+..+|||||+|++|+.|++.++|||||..+...      .....|. ..||+.......  ...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~~~------~~~~~~~-~~g~~~~~~~~~--~~~  138 (218)
T d2z7fe1          68 QVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRL------GNGVQCL-AMGWGLLGRNRG--IAS  138 (218)
T ss_dssp             EEEEEEEEEESCCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCC------CTTCEEE-EEESSBCSSSCC--BCS
T ss_pred             eeeeeeeEeeeccccccccceEEEeeccccceeeeeeeeeeeccCcccc------CCCcEEE-Eeccceeecccc--ccc
Confidence            7778899999999999999999999999999999999999998766521      1111222 344443322111  112


Q ss_pred             eeeEEEEeecCeeeccccceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCcceEEEeeeE
Q psy15989        180 GIVSITVARDGLRVCDTKHYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~~~v~~~V~~  256 (363)
                      .++...+.+.+ ..|.....+...  ...+.|.||+||||+++    |+|+||+|++.     ..|. ...+.+|++|..
T Consensus       139 ~l~~~~~~~~~-~~c~~~~~~~~~~~~~~~~C~gdsG~Pl~~~----~~l~GI~s~~~-----~~c~~~~~p~vft~v~~  208 (218)
T d2z7fe1         139 VLQELNVTVVT-SLCRRSNVCTLVRGRQAGVCFGDSGSPLVCN----GLIHGIASFVR-----GGCASGLYPDAFAPVAQ  208 (218)
T ss_dssp             BCEEEEEEEEC-TTCCTTSEEEECTTSCCBCCTTCTTCEEEET----TEEEEEEEEES-----SSTTCSSSCEEEEEGGG
T ss_pred             ceeEEEecccc-cccceeeeeeeecCcccCccccccCCCEEEC----CEEEEEEEEec-----CCCCCCCcCEEEEEhHH
Confidence            34444554444 357655555443  34578999999999984    59999999942     2343 445788998764

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=100.00  E-value=6.8e-36  Score=255.24  Aligned_cols=203  Identities=23%  Similarity=0.368  Sum_probs=148.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.++||||+|+|+...    .++|+||||+++||||||||+....     ....+.+..+.....     ...+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~~~-----~~~~~~~~~~~~~~~-----~~~~   66 (222)
T d1eq9a_           1 IVGGKDAPVGKYPYQVSLRLSG----SHRCGASILDNNNVLTAAHCVDGLS-----NLNRLKVHVGTNYLS-----ESGD   66 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEECSSSEEEECHHHHTTCS-----CGGGEEEEESCSBTT-----SCCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----CEEEEEEEEeCCEEEECceeccccc-----cccceeeecceeccc-----cCcc
Confidence            7999999999999999998654    7899999999999999999997642     223455555544332     4557


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...|+++++||+|+.....||||||+|++++.+++.++|+|||......       ....|. ..||+.....+.  ...
T Consensus        67 ~~~v~~~~~h~~y~~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~~~-------~~~~~~-~~g~~~~~~~~~--~~~  136 (222)
T d1eq9a_          67 VYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDL-------ESNPCT-LTGWGSTRLGGN--TPN  136 (222)
T ss_dssp             EEEEEEEEECTTCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTC-------TTSEEE-EEECCCSSTTCC--CCS
T ss_pred             eeeeeeEEEeecccccccccceehhhccCCccccccccccccccccccc-------ccceeE-EeeeeeecCCCC--CCc
Confidence            8899999999999999999999999999999999999999998766521       112333 345543322111  122


Q ss_pred             eeeEEEEeecCeeeccccc-------eEE-ecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEE
Q psy15989        180 GIVSITVARDGLRVCDTKH-------YVV-FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVF  251 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~-------~~~-~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~  251 (363)
                      .+....+...+...|....       .+. .....+.|.+|+||||++.    |+|+||+|++      ..|+...+.+|
T Consensus       137 ~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~c~~d~G~pl~~~----~~L~GI~s~~------~~c~~~~p~vy  206 (222)
T d1eq9a_         137 ALQEIELIVHPQKQCERDQWRVIDSHICTLTKRGEGACHGDSGGPLVAN----GAQIGIVSFG------SPCALGEPDVY  206 (222)
T ss_dssp             BCEEEEEEEECHHHHHHHSSSCCTTEEEECCCTTCBCCTTCTTCEEEET----TEEEEEEEEC------STTTSSSCEEE
T ss_pred             cceEEEEEEechHHhccccccccCcceEeccCCCCCccccCCcCCEEEc----CEEEEEEEEC------CCCCCCCCcEE
Confidence            3445555566666775322       222 2344678999999999983    5999999984      24777778999


Q ss_pred             EeeeE
Q psy15989        252 TDVKR  256 (363)
Q Consensus       252 ~~V~~  256 (363)
                      ++|..
T Consensus       207 t~v~~  211 (222)
T d1eq9a_         207 TRVSS  211 (222)
T ss_dssp             EEGGG
T ss_pred             EEHHH
Confidence            98865

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=262.47  Aligned_cols=210  Identities=26%  Similarity=0.451  Sum_probs=149.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|++++|||||+|+.      .++|+||||+++||||||||+.+..    .....+.|..|..+...    ...+
T Consensus         1 i~gG~~~~~g~~Pw~v~i~~------~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~v~~~~~~~~~----~~~~   66 (242)
T d1q3xa1           1 IYGGQKAKPGDFPWQVLILG------GTTAAGALLYDNWVLTAAHAVYEQK----HDASALDIRMGTLKRLS----PHYT   66 (242)
T ss_dssp             CBSCEECCTTSSTTEEEECS------SSSEEEEEETTTEEEECHHHHHHHH----TTTCCCEEEESCSBTTC----SCSE
T ss_pred             CCCCEECCCCCcCcEEEEcC------CCEEEEEEEcCCEEEEChhhccCCC----CCcceEEEEeeeeeecc----cccc
Confidence            79999999999999999963      4679999999999999999996532    13456788888776542    4567


Q ss_pred             eeeeeEEEECCCCCCCC-CCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEE
Q psy15989        100 NKQVKRVHIYPTFNSSN-YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYL  178 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~-~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~  178 (363)
                      .+.|.++++||+|+..+ ..||||||||++|+.|+++++|||++.........   .+ ..+. ..||+......   ..
T Consensus        67 ~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~~~~~~~v~pic~~~~~~~~~~~---~~-~~~~-~~g~~~~~~~~---~~  138 (242)
T d1q3xa1          67 QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMR---TD-DIGT-ASGWGLTQRGF---LA  138 (242)
T ss_dssp             EEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSS---TT-CEEE-EEESSCCTTSS---CC
T ss_pred             ccceeeeEEeeccccccccCccccccccCCCccccccEEEEeccccccccccc---cc-eeee-eeeccccccCc---cc
Confidence            88999999999998766 57999999999999999999999997665421100   00 0111 12232211110   12


Q ss_pred             eeeeEEEEeecCeeeccccc--------------eEEe--cCCCccCcccccceeEEEE--cCccEEEEEEEEEEecCcc
Q psy15989        179 RGIVSITVARDGLRVCDTKH--------------YVVF--TDVANVCNGDSGGGMVFKI--DSAWYLRGIVSITVARDGL  240 (363)
Q Consensus       179 ~~l~~~~~~~~~~~~C~~~~--------------~~~~--~~~~~~C~gdsGgpl~~~~--~~~~~l~Gi~s~~~~~~g~  240 (363)
                      ..++...+.+.+.+.|...+              .+..  ......|.||+||||++..  .++|+|+||+|+     +.
T Consensus       139 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~-----g~  213 (242)
T d1q3xa1         139 RNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSW-----GS  213 (242)
T ss_dssp             SBCEEEEEEEECHHHHHHHTSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEE-----CC
T ss_pred             cceeeeeccccCHHHHHhhhhcccccCceeccceeeeeccCCCccccccccccceEEeeCCCCeEEEEEEEEe-----CC
Confidence            23455667777777885322              1111  1235789999999999876  468999999998     44


Q ss_pred             eecC-CCcceEEEeeeE
Q psy15989        241 RVCD-TKHYVVFTDVKR  256 (363)
Q Consensus       241 ~~c~-~~~~~v~~~V~~  256 (363)
                      ..|. ...+.+|++|..
T Consensus       214 ~~c~~~~~p~vft~v~~  230 (242)
T d1q3xa1         214 MNCGEAGQYGVYTKVIN  230 (242)
T ss_dssp             SSTTCTTCCEEEEEGGG
T ss_pred             CCCCCCCCCEEEEEHHH
Confidence            4453 466788998865

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=1.6e-35  Score=255.30  Aligned_cols=214  Identities=27%  Similarity=0.413  Sum_probs=153.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|++++|||+|+|+........++|+||||+++||||||||+..        .....|.+|........  ....
T Consensus         1 iigG~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~--------~~~~~v~~~~~~~~~~~--~~~~   70 (236)
T d1elta_           1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDS--------ARTWRVVLGEHNLNTNE--GKEQ   70 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSS--------CCCEEEEESCSBTTSCC--SCCE
T ss_pred             CCCCEECCCCCCCcEEEEEEccCCcceeEEEEEEEeCCEEEECeeeccc--------cccceeeccceeeeccc--CCce
Confidence            7999999999999999998877666678999999999999999999974        34567888877655443  5556


Q ss_pred             eeeeeEEEECCCCCCCCC--CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~--~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      ...+..+.+||.|+....  .+|||||+|++|+.+++.++|||||......      .....+. ..||+......  ..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~~~------~~~~~~~-~~g~g~~~~~~--~~  141 (236)
T d1elta_          71 IMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQIL------PNNNPCY-ITGWGKTSTGG--PL  141 (236)
T ss_dssp             EECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCC------CTTCCEE-EEESCCSSTTC--CC
T ss_pred             eeeeeEEEEeeeecccccccCceEEEeeccCcceeecccceeecCchhccc------CCCceEE-EecccccccCc--cc
Confidence            778888889998877654  5799999999999999999999998765511      1111222 23333221110  01


Q ss_pred             EeeeeEEEEeecCeeeccccc----------eEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceec-CCC
Q psy15989        178 LRGIVSITVARDGLRVCDTKH----------YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC-DTK  246 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~~----------~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c-~~~  246 (363)
                      ...+....+.+.+...|....          .+........|.||+||||++..+++|+|+||+|+..    ...| ...
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~l~GI~s~~~----~~~c~~~~  217 (236)
T d1elta_         142 SDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVS----SSGCNASK  217 (236)
T ss_dssp             CSBCEEEECCEECHHHHTSTTTTGGGSCTTEEEECCSSCBCCTTCTTCEEEEEETTEEEEEEEEEECC----SSCTTCTT
T ss_pred             CccceeeeeEEEcHHHhhhhcccccccceeeeecCCccccccccccccceEEEECCeEEEEEEEEEeC----CCCCCCCC
Confidence            122334445555555665322          2333455678999999999999999999999999842    2235 345


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .|.+|++|..
T Consensus       218 ~p~vyt~v~~  227 (236)
T d1elta_         218 KPTVFTRVSA  227 (236)
T ss_dssp             CCEEEEEGGG
T ss_pred             CCEEEEEHHH
Confidence            6789998765

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.2e-35  Score=256.62  Aligned_cols=216  Identities=25%  Similarity=0.358  Sum_probs=146.9

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+........++|+||||+++||||||||+...        ....|.+|..............
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~--------~~~~v~~g~~~~~~~~~~~~~~   72 (240)
T d1gvkb_           1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRE--------LTFRVVVGEHNLNQNNGTEQYV   72 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSC--------CCEEEEESCSBTTSCCSCCEEE
T ss_pred             CCCCEECCCCCCCEEEEEEEecCCccceEEEEEEEeCCEEEECccccccc--------CCceEEeeeeeccccccccccc
Confidence            79999999999999999987766666789999999999999999999753        3567888888776554222222


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...+..++.|+.++.....+|||||+|++++.+++.++|+||+.......     ..  .....+||+......  ....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~~~~-----~~--~~~~~~g~~~~~~~~--~~~~  143 (240)
T d1gvkb_          73 GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILA-----NN--SPCYITGWGLTRTNG--QLAQ  143 (240)
T ss_dssp             EEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCC-----TT--CCEEEEESCBSSTTC--CBCS
T ss_pred             cccceeEEEeecccccccCcceeeecccCcccccccccceeeccCccccc-----cc--cceeEeccccccccc--cccc
Confidence            33333344455566677889999999999999999999999987665211     00  111122332211100  0112


Q ss_pred             eeeEEEEeecCeeecccc----------ceEEe-cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCc
Q psy15989        180 GIVSITVARDGLRVCDTK----------HYVVF-TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKH  247 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~----------~~~~~-~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~  247 (363)
                      .+....+.+.+...|...          ..|.. ......|.||+||||++..+++|+|+||+|+..    ...|. ...
T Consensus       144 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~c~gDsG~pl~~~~~~~~~lvGI~S~~~----~~~c~~~~~  219 (240)
T d1gvkb_         144 TLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVS----RLGCNVTRK  219 (240)
T ss_dssp             BCEEEECCEECHHHHTSTTTTGGGCCTTEEEECCSSSCBCCTTCTTCEEEEEETTEEEEEEEEEECB----TTBSSCTTC
T ss_pred             eeeEEEEEEEcHHHhcceeccCCccCCceEEecCCCCCccccCccccceEEEECCEEEEEEEEEEcC----CCCCCCCCC
Confidence            334445555555555421          12332 234578999999999999999999999999853    12243 356


Q ss_pred             ceEEEeeeE
Q psy15989        248 YVVFTDVKR  256 (363)
Q Consensus       248 ~~v~~~V~~  256 (363)
                      +.+|++|..
T Consensus       220 p~vyt~v~~  228 (240)
T d1gvkb_         220 PTVFTRVSA  228 (240)
T ss_dssp             CEEEEEGGG
T ss_pred             CEEEEEHHH
Confidence            789998865

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.4e-35  Score=252.14  Aligned_cols=201  Identities=27%  Similarity=0.377  Sum_probs=145.0

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+..     .++|+||||+++||||||||+....        ...+  .........  ....
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~-----~~~C~GtLIs~~~VLTaAhCv~~~~--------~~~~--~~~~~~~~~--~~~~   63 (223)
T d1j16a_           1 IVGGYTCQENSVPYQVSLNSG-----YHFCGGSLINDQWVVSAAHCYKSRI--------QVRL--GEHNINVLE--GNEQ   63 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEESS-----SEEEEEEEEETTEEEECGGGCCSSC--------EEEE--SCSBTTSCC--SCCE
T ss_pred             CCCCEECCCCCCCcEEEEeCC-----CEEEEEEEEcCCEEEeCHHHCCCcC--------Ccee--eeeeecccc--ccce
Confidence            789999999999999999532     6899999999999999999997532        1111  111222221  4557


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...+.++++||+|++....||||||+|++++.|+++++|||||......       +. .|. ..||+.....+. ....
T Consensus        64 ~~~~~~~~~hp~y~~~~~~~diAll~L~~~v~~~~~~~picL~~~~~~~-------~~-~~~-~~g~g~~~~~~~-~~~~  133 (223)
T d1j16a_          64 FVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPA-------GT-QCL-ISGWGNTLSSGV-NEPD  133 (223)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCSSCCCT-------TC-EEE-EEESSCCCSSSC-CCCS
T ss_pred             eeeeeeEEecCCCCccccceeEEEEEecCccccceeEEEEecCCcCCCC-------CC-EEE-EEeeeeeeCCCc-cCcc
Confidence            8889999999999999999999999999999999999999999766521       21 233 455554322221 1123


Q ss_pred             eeeEEEEeecCeeeccccce--------EEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKHY--------VVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~--------~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .++...+.+.+.+.|...+.        |..  ......|.||+||||++.    ++|+||+|+     +..+|....+.
T Consensus       134 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~----~~L~Gi~s~-----~~~~~~~~~p~  204 (223)
T d1j16a_         134 LLQCLDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDACQGDSGGPVVCN----GELQGIVSW-----GYGCALPDNPG  204 (223)
T ss_dssp             BCEEEEEEEECHHHHHSSSSCCCCTTEEEESCTTCSCBCCTTCTTCEEEET----TEEEEEEEE-----CSSSSCTTCCE
T ss_pred             eeeEEEEEEEEhhHhhccccceeCCCceEEecCCCCCcccCCccCCcEEEe----eEEEEEEEE-----ccCCCCCCCCE
Confidence            35566677778888874322        222  123578999999999984    499999999     44455556788


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       205 vft~v~~  211 (223)
T d1j16a_         205 VYTKVCN  211 (223)
T ss_dssp             EEEEGGG
T ss_pred             EEEEhHH
Confidence            8998765

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-36  Score=254.85  Aligned_cols=203  Identities=26%  Similarity=0.312  Sum_probs=151.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.++||||+|+|+.... ...++|+||||+++||||||||+.+          ...|.+|........  ...+
T Consensus         1 IvgG~~a~~~e~Pw~v~i~~~~~-~~~~~C~GtlI~~~~VLTaAhC~~~----------~~~v~~g~~~~~~~~--~~~~   67 (224)
T d1t32a1           1 IIGGRESRPHSRPYMAYLQIQSP-AGQSRCGGFLVREDFVLTAAHCWGS----------NINVTLGAHNIQRRE--NTQQ   67 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESSS-TTSCEEEEEEEETTEEEECGGGCCS----------CEEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcC-CCCEEEEEEEEcCCEEEEeEEcccc----------cccceeeeeeeeccc--ccee
Confidence            79999999999999999976543 2368999999999999999999853          478899988776554  5567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...|++++.||+|+.....|||||++|+.|+.+++.++|+|||.......     .+ ..+. ..||+......   ...
T Consensus        68 ~~~v~~i~~~~~~~~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~~~~-----~~-~~~~-~~g~g~~~~~~---~~~  137 (224)
T d1t32a1          68 HITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLR-----PG-TLCT-VAGWGRVSMRR---GTD  137 (224)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCC-----TT-CEEE-EEESCCSSSSC---CCS
T ss_pred             eecceeEEEeecccccccccceeEEeeccccccCcccCccccccccccCC-----CC-CEEE-EecccccccCC---Ccc
Confidence            88999999999999999999999999999999999999999998776211     11 1111 22333221111   122


Q ss_pred             eeeEEEEeecCeeeccccc--------eEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKH--------YVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~--------~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .++...+.+++...|...+        .+..  ....+.|.||+||||++.    ++|+||+|++     . .|. ..+.
T Consensus       138 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g-----~-~~~-~~p~  206 (224)
T d1t32a1         138 TLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCN----NVAHGIVSYG-----K-SSG-VPPE  206 (224)
T ss_dssp             BCEEEEEEBCCHHHHHHHSTTCCTTTEEEECCTTSSCBCCTTCTTCEEEET----TEEEEEEEEC-----C-TTC-CSCE
T ss_pred             eeeeeeeeecCHHHHHhhcCcccccccceeecccccccccccCcCCeEEEc----CEEEEEEEEc-----C-CCC-CCCc
Confidence            3556677788888896322        2222  234678999999999984    4999999994     2 233 3478


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       207 vyt~v~~  213 (224)
T d1t32a1         207 VFTRVSS  213 (224)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            8998865

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=258.34  Aligned_cols=211  Identities=29%  Similarity=0.456  Sum_probs=148.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|..+||||+|+|+...    .++|+||||+++||||||||+.+....    ........+.  ....  ....+
T Consensus         1 i~gG~~~~~~e~Pw~v~I~~~~----~~~C~GtLIs~~~VLTaAhCv~~~~~~----~~~~~~~~~~--~~~~--~~~~~   68 (255)
T d1z8ga1           1 IVGGRDTSLGRWPWQVSLRYDG----AHLCGGSLLSGDWVLTAAHCFPERNRV----LSRWRVFAGA--VAQA--SPHGL   68 (255)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEESSSSEEEECGGGCCGGGCC----GGGEEEEESC--SBTT--CTTSE
T ss_pred             CCCCEECCCCCcCcEEEEEECC----cEEEEEEEEeCCEEEECceecCCCCCc----cceeeEeeee--eccc--CCccE
Confidence            7899999999999999998654    789999999999999999999764211    1122222222  2222  25567


Q ss_pred             eeeeeEEEECCC------CCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEec
Q psy15989        100 NKQVKRVHIYPT------FNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKID  173 (363)
Q Consensus       100 ~~~V~~i~~hp~------y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~  173 (363)
                      ...+.+++.||.      |+.....||||||+|++|+.|++.++|+||+......      .....|. ..||+.....+
T Consensus        69 ~~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~~~------~~~~~~~-~~G~~~~~~~~  141 (255)
T d1z8ga1          69 QLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQAL------VDGKICT-VTGWGNTQYYG  141 (255)
T ss_dssp             EECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCC------CTTCEEE-EEESSBSSTTS
T ss_pred             EEEEEEEEEEeeeccccccccCCccccEEEEecCCccccCcccccceecccCccc------CCCcEEE-eeccccccCCC
Confidence            889999999998      5566778999999999999999999999998766521      1112233 34443322111


Q ss_pred             CeeEEeeeeEEEEeecCeeeccccce----------EE-e-cCCCccCcccccceeEEEE----cCccEEEEEEEEEEec
Q psy15989        174 SAWYLRGIVSITVARDGLRVCDTKHY----------VV-F-TDVANVCNGDSGGGMVFKI----DSAWYLRGIVSITVAR  237 (363)
Q Consensus       174 ~~~~~~~l~~~~~~~~~~~~C~~~~~----------~~-~-~~~~~~C~gdsGgpl~~~~----~~~~~l~Gi~s~~~~~  237 (363)
                      .  ....++...+++.+...|...+.          +. . ......|.||+||||++..    .++|+|+||+|+    
T Consensus       142 ~--~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~----  215 (255)
T d1z8ga1         142 Q--QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSW----  215 (255)
T ss_dssp             C--BCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEE----
T ss_pred             c--ccceeEEEEEEEeCHHHhhhhhccCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEE----
Confidence            1  12334566677778888864221          11 1 2235689999999999886    467999999999    


Q ss_pred             CcceecCCCcceEEEeeeE
Q psy15989        238 DGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       238 ~g~~~c~~~~~~v~~~V~~  256 (363)
                       +..+|....+.+|++|..
T Consensus       216 -g~~c~~~~~p~vft~V~~  233 (255)
T d1z8ga1         216 -GTGCALAQKPGVYTKVSD  233 (255)
T ss_dssp             -BSSSSCTTCCEEEEEGGG
T ss_pred             -CCCCCCCCCCEEEEEHHH
Confidence             444566677889998765

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=260.38  Aligned_cols=204  Identities=24%  Similarity=0.288  Sum_probs=152.3

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.++||||+|+|+..... ..++|+||||+++||||||||+..          ...|.+|........  ...+
T Consensus         1 iigG~~a~~~~~Pw~v~l~~~~~~-~~~~C~GtLIs~~~VLTaAhC~~~----------~~~v~~g~~~~~~~~--~~~~   67 (227)
T d1fq3a_           1 IIGGHEAKPHSRPYMAYLMIWDQK-SLKRCGGFLIQDDFVLTAAHCWGS----------SINVTLGAHNIKEQE--PTQQ   67 (227)
T ss_dssp             CBTCBCCCTTSCTTEEECCEEETT-EEECCEEEEEETTEEEECGGGCCS----------EEEEEESCSBTTTTC--TTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCC-CcEEEEEEEEeCCEEEeCEeeccc----------cccceeccccccccc--cccE
Confidence            799999999999999999765432 368899999999999999999963          477889988776544  5567


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.|.+++.||.|+..+..||||||+|++|+.|+++|+|+|||......      .....+. ..||+.....+.  ...
T Consensus        68 ~~~v~~i~~~~~~~~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~~~------~~~~~~~-~~G~~~~~~~~~--~~~  138 (227)
T d1fq3a_          68 FIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQV------KPGQTCS-VAGWGQTAPLGK--HSH  138 (227)
T ss_dssp             EEEEEEECCCTTCCTTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSCCC------CTTCEEE-CCCSCCSTTTSC--CCS
T ss_pred             EEEEEEEEecccCCCCCCCcchhhhhcccccccceeEEEEeeccccccc------CCCCEEE-EEeeccccCccc--ccc
Confidence            8999999999999999999999999999999999999999998765511      1112333 456664322111  123


Q ss_pred             eeeEEEEeecCeeeccccceE-----------EecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTKHYV-----------VFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~~-----------~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .+....+.+.+.+.|...+..           ........|.||+||||++.    ++|+||+|++     .. |. ..+
T Consensus       139 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~----~~l~GI~s~g-----~~-~~-~~p  207 (227)
T d1fq3a_         139 TLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCN----KVAQGIVSYG-----RN-NG-MPP  207 (227)
T ss_dssp             BCCBCEEECCCHHHHTTTCTTTCCTTTEECCSCTTSSCBCCTTCTTCBCBSS----SSCCCEECCC-----CT-TS-CSC
T ss_pred             cceEEEEEEEcHHHhhhhhcccccccceeeeeccccccccccCCCCceEEEe----CEEEEEEEEc-----CC-CC-CCC
Confidence            355667788888889754321           11224578999999999984    5999999983     32 32 336


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       208 ~vyt~v~~  215 (227)
T d1fq3a_         208 RACTKVSS  215 (227)
T ss_dssp             CCEECHHH
T ss_pred             cEEEEHHH
Confidence            78888764

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=7.4e-36  Score=255.48  Aligned_cols=204  Identities=25%  Similarity=0.368  Sum_probs=149.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||+|+|+..+    .++|+||||+++||||||||+...      +.....+..+.....     ...+
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~----~~~C~GtLIs~~~VLTaAhC~~~~------~~~~~~~~~~~~~~~-----~~~~   65 (224)
T d1gdna_           1 IVGGTSASAGDFPFIVSISRNG----GPWCGGSLLNANTVLTAAHCVSGY------AQSGFQIRAGSLSRT-----SGGI   65 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECHHHHTTS------CGGGEEEEESCSBSS-----SSSE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----CEEEEEEEEeCCEEEECcccceec------cccccceeecccccc-----CCcc
Confidence            7999999999999999997643    889999999999999999999764      234567777765543     4457


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.+..++.||+|..  ..||||||+|++|+.+++.++|+|++......      .....|. .+||+...... .....
T Consensus        66 ~~~~~~i~~h~~~~~--~~~DiAll~L~~~v~~~~~~~~i~~~~~~~~~------~~~~~~~-~~g~g~~~~~~-~~~~~  135 (224)
T d1gdna_          66 TSSLSSVRVHPSYSG--NNNDLAILKLSTSIPSGGNIGYARLAASGSDP------VAGSSAT-VAGWGATSEGG-SSTPV  135 (224)
T ss_dssp             EEEEEEEEECTTCBT--TBSCCEEEEESSCCCCBTTBCCCCBCCTTCCC------CTTCEEE-EEESCCSSTTC-SCCCS
T ss_pred             eEEEEEEEeeecccc--ccceeEEEeeccccccccccceeecccccccc------ccceeee-eeccCccccCC-CcCCC
Confidence            788999999998864  46899999999999999999999998776521      1112333 45665432111 11123


Q ss_pred             eeeEEEEeecCeeeccccc---------eEE--ecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcc
Q psy15989        180 GIVSITVARDGLRVCDTKH---------YVV--FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHY  248 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~---------~~~--~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~  248 (363)
                      .++...+.+++.+.|...+         .+.  .....+.|.||+||||++   .+|+|+||+|+     +..+|....+
T Consensus       136 ~l~~~~v~~i~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~c~~dsG~pl~~---~~~~l~GI~S~-----g~~c~~~~~p  207 (224)
T d1gdna_         136 NLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVD---SSNTLIGAVSW-----GNGCARPNYS  207 (224)
T ss_dssp             BCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEC---TTCCEEEEEEE-----CSSSSCTTCC
T ss_pred             EeeeeEEEEeCHHHHhcccccCccccceeeeecCCCCccccccccCCceEe---cCCEEEEEEEe-----CCCCCCCCCC
Confidence            3556677888888886322         111  123357899999999984   45799999999     4445566778


Q ss_pred             eEEEeeeE
Q psy15989        249 VVFTDVKR  256 (363)
Q Consensus       249 ~v~~~V~~  256 (363)
                      .+|++|..
T Consensus       208 ~vyt~v~~  215 (224)
T d1gdna_         208 GVYASVGA  215 (224)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEHHH
Confidence            89999854

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-35  Score=252.25  Aligned_cols=205  Identities=23%  Similarity=0.302  Sum_probs=143.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      ||||.+|... |||||+|+.++    .|+|+||||+++||||||||+.+.      +...+.|++|.++..........+
T Consensus         1 ~~~g~~~~~~-~~w~vsi~~~~----~~~C~GtLIs~~~VLTaAhCv~~~------~~~~~~v~~g~~~~~~~~~~~~~~   69 (234)
T d1si5h_           1 VVNGIPTRTN-IGWMVSLRYRN----KHICGGSLIKESWVLTARQCFPSR------DLKDYEAWLGIHDVHGRGDEKCKQ   69 (234)
T ss_dssp             CBSCEECSSC-CTTEEEEEESS----SEEEEEEEEETTEEEEEGGGCSSS------CGGGEEEEESCSBSSCSTTTTTCE
T ss_pred             CCCCEeCCCC-cCeEEEEEECC----cEEEEEEEEeCCEEEECcCccCCC------CCccceEEEEeecccccccceeEE
Confidence            7999999764 99999998765    789999999999999999999753      456789999998776554334455


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.+..+..||+|      ||||||||++|+.++++|+|||||.......     ... .+. ..||+.......   ..
T Consensus        70 ~~~~~~~~~~~~~------~DIAll~L~~~v~~~~~v~picl~~~~~~~~-----~~~-~~~-~~g~~~~~~~~~---~~  133 (234)
T d1si5h_          70 VLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIP-----EKT-SCS-VYGWGYTGLINY---DG  133 (234)
T ss_dssp             EEEEEEEEECSST------TCEEEEEESSCCCCSSSCCCCBCCCTTCCCC-----TTC-EEE-EEESSCCCCSSC---CC
T ss_pred             EEeeccccCCCcc------cceEEEeeccCccccccccccccccccccCC-----cce-eEE-Eecccccccccc---cc
Confidence            6667777777664      6999999999999999999999987765221     111 111 112211111111   11


Q ss_pred             eeeEEEEeecCeeeccccc----------eEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCc
Q psy15989        180 GIVSITVARDGLRVCDTKH----------YVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH  247 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~----------~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~  247 (363)
                      .++...+.+.+...|...+          .|...  ...+.|.||+||||++..+++|+|+||+|+     +..++....
T Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~-----g~~c~~~~~  208 (234)
T d1si5h_         134 LLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVP-----GRGCAIPNR  208 (234)
T ss_dssp             BCEEEEEEEECGGGTCC-------CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECS-----CSCSSCTTC
T ss_pred             eeEEEEeeccchhHhhhhhccccccCCccEEEccCCcCCCCCcCccccceEEecCCeEEEEEEEEe-----CCCCCCCCC
Confidence            2334455555555554322          23322  235789999999999999999999999997     333334467


Q ss_pred             ceEEEeeeE
Q psy15989        248 YVVFTDVKR  256 (363)
Q Consensus       248 ~~v~~~V~~  256 (363)
                      +.+|++|..
T Consensus       209 p~vyt~i~~  217 (234)
T d1si5h_         209 PGIFVRVAY  217 (234)
T ss_dssp             CEEEEEGGG
T ss_pred             CEEEEEHHH
Confidence            889998765

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-35  Score=256.61  Aligned_cols=202  Identities=27%  Similarity=0.429  Sum_probs=146.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|++++|||||+|+..+    .|+|+||||+++||||||||+..          ...|++|...+....  ...+
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~----~~~C~GtLIs~~~VLTaAhCv~~----------~~~v~~~~~~~~~~~--~~~~   64 (237)
T d1ao5a_           1 VVGGFNCEKNSQPWQVAVYYQK----EHICGGVLLDRNWVLTAAHCYVD----------QYEVWLGKNKLFQEE--PSAQ   64 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEEEETTEEEECTTCCCS----------SCEEEESCCBSSSCC--SSCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----cEEEEEEEeeCCEEEECHHHcCC----------CceEEEEeccccccc--cccE
Confidence            7999999999999999998643    78999999999999999999964          346888888776544  5667


Q ss_pred             eeeeeEEEECCCCCCC-----------CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccc
Q psy15989        100 NKQVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM  168 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~-----------~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~  168 (363)
                      .+.+.+++.||.|+..           .+.||||||||++|++|++.++|+|||.......        ..|. .+||+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp~~~~~~~--------~~~~-~~g~~~  135 (237)
T d1ao5a_          65 HRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPG--------SKCL-ASGWGS  135 (237)
T ss_dssp             ECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCCCTT--------CEEE-EEESCC
T ss_pred             EEEEEEEeecccccccccccccccCccccccceeeeccCcccccccccceeccCCCCCccc--------ceEE-Eeeeee
Confidence            8899999999998642           3468999999999999999999999998766221        1233 345543


Q ss_pred             eEEecCeeEEeeeeEEEEeecCeeecccc--------ceEEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecC
Q psy15989        169 VFKIDSAWYLRGIVSITVARDGLRVCDTK--------HYVVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARD  238 (363)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~~~~~~~~C~~~--------~~~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~  238 (363)
                      ....... ....+....+...+...|...        ..+...  .....|.||+||||+++    ++|+||+|++    
T Consensus       136 ~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~----~~l~Gi~S~g----  206 (237)
T d1ao5a_         136 ITPTRWQ-KPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTSYG----  206 (237)
T ss_dssp             SSCC-CC-CCSBCEEEEEEEECHHHHHHHCSSCCCTTEEEEECTTCSCBCCTTCTTCEEEET----TEEEEEEEEC----
T ss_pred             ecccccc-CCccceeeEEEEEehHHhhhhhcCCCCCCeEEEccCCCCCcccCCCCCCeeEEc----cEEEEEEEEe----
Confidence            2221110 112233444555556666421        122222  34578999999999984    5999999994    


Q ss_pred             cceec-CCCcceEEEeeeE
Q psy15989        239 GLRVC-DTKHYVVFTDVKR  256 (363)
Q Consensus       239 g~~~c-~~~~~~v~~~V~~  256 (363)
                       ...| ....+.+|++|..
T Consensus       207 -~~~c~~~~~p~vft~V~~  224 (237)
T d1ao5a_         207 -PVPCGKPGVPAIYTNLIK  224 (237)
T ss_dssp             -CSSTTCTTCCEEEECGGG
T ss_pred             -cCCCCCCCCCeEEEEHHH
Confidence             3334 4566889998865

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=258.14  Aligned_cols=220  Identities=26%  Similarity=0.388  Sum_probs=145.8

Q ss_pred             CCCCccccC--CccceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEE
Q psy15989          6 VSCGTVVYN--KAQPLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIY   83 (363)
Q Consensus         6 ~~CG~~~~~--~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~   83 (363)
                      .+||++...  ...+||+||.+|++++|||+|+|+...+   .++|+||||+++||||||||+....     ........
T Consensus         2 ~~cg~~~~~~~~~~~ri~gG~~a~~~~~Pw~v~i~~~~~---~~~C~GtLIs~~~VLTaAhCv~~~~-----~~~~~~~~   73 (247)
T d1rjxb_           2 FDCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFG---MHFCGGTLISPEWVLTAAHCLEKSP-----RPSSYKVI   73 (247)
T ss_dssp             CSTTCCSSCCCCCCTTSTTCEECCTTSSTTEEEEEETTC---CEEEEEEEEETTEEEEEGGGGTTCS-----CGGGEEEE
T ss_pred             CCCCCCCcCCCCCCCeEECCEECCCCCCCcEEEEEECCC---CEEEEEEEEeCCEEEeeeEEEEecc-----CCccceee
Confidence            589986433  3456899999999999999999976532   7899999999999999999997642     23334444


Q ss_pred             eceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCC
Q psy15989         84 LGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGD  163 (363)
Q Consensus        84 ~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~  163 (363)
                      .+.......        ....+.+.|+.|......+||||++|++++.+++.++|+||+.......      ....+. .
T Consensus        74 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~~~------~~~~~~-~  138 (247)
T d1rjxb_          74 LGAHQEVNL--------EPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVA------DRTECF-I  138 (247)
T ss_dssp             ESCCBSSSC--------CTTCEEEEEEEEEECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCCCC------TTCEEE-E
T ss_pred             ccccccccc--------cceeeEEeeccccCCCccchhhhhhhhcccccccccccccccccccccC------CCceee-e
Confidence            444333221        1223455555565556789999999999999999999999987655211      111111 2


Q ss_pred             CCccceEEecCeeEEeeeeEEEEeecCeeecccc----------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEE
Q psy15989        164 SGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTK----------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIV  231 (363)
Q Consensus       164 ~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~----------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~  231 (363)
                      .||+.......   ...+....+.+.+...|...          ..+..  ....+.|.||+||||++..+++|+|+||+
T Consensus       139 ~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~  215 (247)
T d1rjxb_         139 TGWGETQGTFG---AGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVT  215 (247)
T ss_dssp             EECCC----CC---CSBCEEEEEEEECHHHHTSTTTTTTCSCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEE
T ss_pred             cccccccCCCC---CCcceEEEEEEEchHHhhhhhccCcccccceeEEeccCCCcccccCCccceEEEeeCCEEEEEEEE
Confidence            33433222111   11223344444555555321          11221  23457899999999999999999999999


Q ss_pred             EEEEecCcceecCCCcceEEEeeeE
Q psy15989        232 SITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       232 s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      |+     +..++....+.+|++|..
T Consensus       216 S~-----~~~c~~~~~p~v~t~v~~  235 (247)
T d1rjxb_         216 SW-----GLGCARPNKPGVYVRVSR  235 (247)
T ss_dssp             CT-----TSCCBBTTBCEEEEEGGG
T ss_pred             Ee-----CCCCCCCCCCEEEEEHHH
Confidence            98     444555667889998865

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=100.00  E-value=3.3e-35  Score=253.99  Aligned_cols=216  Identities=25%  Similarity=0.415  Sum_probs=157.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++++++||||||+|+...+ ...++|+||||+++||||||||+...      ....+.|+.|..+....   ...+
T Consensus         1 i~gG~~~~~~e~Pw~v~l~~~~~-~~~~~C~GtLIs~~~VLTaAhCv~~~------~~~~~~v~~~~~~~~~~---~~~~   70 (241)
T d1m9ua_           1 VIGGTNASPGEFPWQLSQQRQSG-SWSHSCGASLLSSTSALSASHCVDGV------LPNNIRVIAGLWQQSDT---SGTQ   70 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESS-SEEEEEEEEECSSSEEEECHHHHTTC------CGGGEEEEESCSBTTCC---TTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEeCC-CccEEEEEEEEeCCEEEEChhhcccc------cCceeeEEEEeeecccc---cccc
Confidence            79999999999999999987653 35789999999999999999999653      45678899998776543   5568


Q ss_pred             eeeeeEEEECCCCCCCC--CCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNSSN--YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~--~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.|+++++||.|+..+  ..||||||+|++++.+++.++|||+|......     ..+ ..+. ..||+.....+.  .
T Consensus        71 ~~~v~~~~~h~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~-----~~~-~~~~-~~g~~~~~~~~~--~  141 (241)
T d1m9ua_          71 TANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNND-----YAG-TTCV-ISGWGRTDGTNN--L  141 (241)
T ss_dssp             EEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCC-----CTT-CEEE-EEESSCSSSSSC--C
T ss_pred             cccceeeeeeeeeccccccccccceeeeccceeeeeeceeeeeeecccccc-----ccc-eEEE-EeecccccCCCC--C
Confidence            89999999999998754  57899999999999999999999998665411     111 1111 334433221111  1


Q ss_pred             EeeeeEEEEeecCeeeccccce------------EE--ecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceec
Q psy15989        178 LRGIVSITVARDGLRVCDTKHY------------VV--FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC  243 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~~~------------~~--~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c  243 (363)
                      ...+....+.+.+.+.|...+.            +.  .....+.|.||+||||++. +++++|+|++++.. ..+..+|
T Consensus       142 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~-~~~~~l~Gi~s~~~-~~g~~~~  219 (241)
T d1m9ua_         142 PDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCP-DGGTRVVGVTSWVV-SSGLGAC  219 (241)
T ss_dssp             CSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEE-SSSEEEEEEEEECC-BCTTSCB
T ss_pred             CCcceEEEEEeechhHhhhhhhcccccccccceeEeecccCCcCcccCCCCcceEEe-cCCEEEEEEEEEEE-cCCCCCC
Confidence            2234566777788888863221            11  1223578999999999976 45689999998643 2345567


Q ss_pred             CCCcceEEEeeeE
Q psy15989        244 DTKHYVVFTDVKR  256 (363)
Q Consensus       244 ~~~~~~v~~~V~~  256 (363)
                      ....+.+|++|..
T Consensus       220 ~~~~p~vft~V~~  232 (241)
T d1m9ua_         220 LPDYPSVYTRVSA  232 (241)
T ss_dssp             CTTSCEEEEEGGG
T ss_pred             CCCCCEEEEEHHH
Confidence            7778899999876

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-36  Score=260.30  Aligned_cols=209  Identities=26%  Similarity=0.449  Sum_probs=146.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||||+|+.      .+.|+||||+++||||||||+....... .....+.|++|.++....   ...+
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~------~~~C~GtLIs~~~VLTaAhC~~~~~~~~-~~~~~~~v~~g~~~~~~~---~~~~   70 (240)
T d2qy0b1           1 IIGGQKAKMGNFPWQVFTNI------HGRGGGALLGDRWILTAAHTLYPKEHEA-QSNASLDVFLGHTNVEEL---MKLG   70 (240)
T ss_dssp             CBSCEECCTTSSTTEEEEES------SSEEEEEEETTTEEEECHHHHSCSSCCC-----CCEEEESCSBHHHH---HHHC
T ss_pred             CCCCEECCCCCcCCEEEECC------CceEEEEEEcCCEEEEChHhCCCccccc-ccccceeeeeeecccccc---CCcc
Confidence            79999999999999999864      4579999999999999999998653222 234568999999876532   3346


Q ss_pred             eeeeeEEEECCCCCCCC---CCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCee
Q psy15989        100 NKQVKRVHIYPTFNSSN---YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAW  176 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~---~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~  176 (363)
                      .+.|++|++||+|+...   ..||||||+|++|+.+++.++||||+..... .     .....+. ..||+......   
T Consensus        71 ~~~v~~i~vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~pi~l~~~~~~-~-----~~~~~~~-~~g~g~~~~~~---  140 (240)
T d2qy0b1          71 NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-Y-----DLGLMGY-VSGFGVMEEKI---  140 (240)
T ss_dssp             CCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGG-G-----CTTCEEE-EEECCCCSSSC---
T ss_pred             eEEEEEEEeccccccccccccCCCceEEecCCccccccccceEEecccccc-c-----ccCceee-ecccccccccc---
Confidence            78899999999998753   5689999999999999999999999876541 1     1111222 23444322111   


Q ss_pred             EEeeeeEEEEeecCeeeccccc-------------eEEe--cCCCccCcccccceeEEEEc--CccEEEEEEEEEEecCc
Q psy15989        177 YLRGIVSITVARDGLRVCDTKH-------------YVVF--TDVANVCNGDSGGGMVFKID--SAWYLRGIVSITVARDG  239 (363)
Q Consensus       177 ~~~~l~~~~~~~~~~~~C~~~~-------------~~~~--~~~~~~C~gdsGgpl~~~~~--~~~~l~Gi~s~~~~~~g  239 (363)
                       ...++...+.+.+...|...+             .+..  ......|.||+|+||++...  ++|+|+||+|++     
T Consensus       141 -~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g-----  214 (240)
T d2qy0b1         141 -AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWG-----  214 (240)
T ss_dssp             -CSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEEC-----
T ss_pred             -cccceEEEEEEcCHHHHHHHhhccccCCceecceEEeccCCccceeeccccccceEEEeCCCCeEEEEEEEEEC-----
Confidence             122334456667777786321             1221  22356889999999999863  578999999994     


Q ss_pred             ceecCCCcceEEEeeeE
Q psy15989        240 LRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       240 ~~~c~~~~~~v~~~V~~  256 (363)
                      . .|. ..+.+|++|..
T Consensus       215 ~-~c~-~~p~vft~v~~  229 (240)
T d2qy0b1         215 I-GCS-RGYGFYTKVLN  229 (240)
T ss_dssp             S-SSS-SSCEEEEEGGG
T ss_pred             C-CCC-CCCeEEEEHHH
Confidence            2 354 33678888754

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.6e-34  Score=249.55  Aligned_cols=214  Identities=27%  Similarity=0.415  Sum_probs=152.9

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|+++||||+|.|.........++|+||||+++||||||||+...        ....|.++........  ...+
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~--------~~~~v~~~~~~~~~~~--~~~~   70 (241)
T d1brup_           1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSS--------RTYRVVLGRHSLSTNE--PGSL   70 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTT--------SCEEEEESCSBSSSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEcCCCcceEEeEEEEEeCCEEEECeEeeecc--------cccceeeeccceeccC--CCcc
Confidence            79999999999999999987765556789999999999999999999753        3456666665554433  5668


Q ss_pred             eeeeeEEEECCCCCCCCC--CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~--~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.|+++++||.|+....  .+|||||+|+.++.++..++|||++......     ..+ ..+. ..||+.......  .
T Consensus        71 ~~~v~~~~~~~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~~~-----~~~-~~~~-~~g~g~~~~~~~--~  141 (241)
T d1brup_          71 AVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTIL-----PNN-YVCY-VTGWGRLQTNGA--S  141 (241)
T ss_dssp             EEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCC-----CTT-CEEE-EEESCCSSTTSC--C
T ss_pred             ccceeeeEEEeeeeeccccCCceEEEEecccccccccceeeeeeccccccC-----CCc-eeEE-EEeeeccCCCCc--C
Confidence            899999999999977664  4679999999999999999999998776521     111 1222 344443221111  1


Q ss_pred             EeeeeEEEEeecCeeeccccce----------E-EecCCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceec-C
Q psy15989        178 LRGIVSITVARDGLRVCDTKHY----------V-VFTDVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVC-D  244 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~~~----------~-~~~~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c-~  244 (363)
                      ...+....+..++...|.....          + ......+.|.||+||||++.. +++|+|+||+|++.    ...| .
T Consensus       142 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~C~gdsGgPl~~~~~~~~~~L~Gi~S~g~----~~~c~~  217 (241)
T d1brup_         142 PDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGS----SLGCNY  217 (241)
T ss_dssp             CSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEECCSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECB----TTBSSC
T ss_pred             CCcceEEEEEEeCHHHhCccccccccccccceeecCCCCccccCCCcccceEEEcCCCCEEEEEEEEECC----CCCCCC
Confidence            1234455666677778864221          1 122345789999999999874 67899999999952    1224 3


Q ss_pred             CCcceEEEeeeE
Q psy15989        245 TKHYVVFTDVKR  256 (363)
Q Consensus       245 ~~~~~v~~~V~~  256 (363)
                      ...+.+|++|..
T Consensus       218 ~~~p~vyt~v~~  229 (241)
T d1brup_         218 YHKPSVFTRVSN  229 (241)
T ss_dssp             TTCCEEEEEGGG
T ss_pred             CCCCEEEEEHHH
Confidence            456789998865

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-36  Score=257.48  Aligned_cols=211  Identities=27%  Similarity=0.447  Sum_probs=148.1

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+...    .++|+||||+++||||||||+...        ....+...........  ....
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~----~~~C~GtLI~~~~VLTaAhCv~~~--------~~~~~~~~~~~~~~~~--~~~~   66 (235)
T d1rfna_           1 VVGGEDAKPGQFPWQVVLNGKV----DAFCGGSIVNEKWIVTAAHCVETG--------VKITVVAGEHNIEETE--HTEQ   66 (235)
T ss_dssp             CBTCEECCTTSSTTEEEEESSS----TTCEEEEEEETTEEEECGGGCCTT--------CCCEEEESCSBSSSCC--SCCE
T ss_pred             CCCCEECCCCCcCCEEEEecCC----CEEEEEEEeeCCEEEEChhhcCCC--------CceEEEEeecccccCC--CCcc
Confidence            7999999999999999997543    678999999999999999999753        2233444444433332  5567


Q ss_pred             eeeeeEEEECCCCCCC--CCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        100 NKQVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~--~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                      .+.+.++++||+|+..  ...||||||||++|+.++..++|+|||........   ..+. .+. .+||+....  ....
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~~~---~~~~-~~~-~~g~~~~~~--~~~~  139 (235)
T d1rfna_          67 KRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIF---LKFG-SGY-VSGWGRVFH--KGRS  139 (235)
T ss_dssp             EEEEEEEEECTTCBTTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHH---HTTS-EEE-EEESCBSST--TSCB
T ss_pred             eeeeeEEeeccCCCCCcCccCceEEEEEeCCCccCCCccceeeeccccccccc---cccc-eEE-Eeccccccc--cccc
Confidence            7889999999999764  46799999999999999999999999865431100   0010 111 222222111  1111


Q ss_pred             EeeeeEEEEeecCeeeccccce--------EE--ecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCc
Q psy15989        178 LRGIVSITVARDGLRVCDTKHY--------VV--FTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH  247 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~~~--------~~--~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~  247 (363)
                      ...+....+.+.++..|...+.        +.  .....+.|.||+||||++..+++|+|+||+|++     ..+|....
T Consensus       140 ~~~l~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~l~Gi~s~g-----~~~~~~~~  214 (235)
T d1rfna_         140 ALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWG-----EECAMKGK  214 (235)
T ss_dssp             CSBCEEEEEEBCCHHHHHHHCSSCCCTTEEEESCSSCSCBCCTTCTTCEEEEESSSCEEEEEEEEEE-----SSSSCTTC
T ss_pred             cCcceEEEEecccccccccccCceecCCeeEeecCCCCccccCCCCCceeEEecCCeEEEEEEEEeC-----CCCCCCCC
Confidence            2235566777788888863211        11  223357899999999999999999999999994     34455567


Q ss_pred             ceEEEeeeE
Q psy15989        248 YVVFTDVKR  256 (363)
Q Consensus       248 ~~v~~~V~~  256 (363)
                      +.+|++|..
T Consensus       215 p~vyt~v~~  223 (235)
T d1rfna_         215 YGIYTKVSR  223 (235)
T ss_dssp             CEEEEEGGG
T ss_pred             CEEEEEHHH
Confidence            889988764

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-35  Score=250.33  Aligned_cols=201  Identities=25%  Similarity=0.360  Sum_probs=149.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.+++|||+|+|+.     ..++|+||||+++||||||||+...          ..+++|........  ...+
T Consensus         1 i~GG~~a~~~~~Pw~v~l~~-----~~~~C~GtLIs~~~VLTaAhC~~~~----------~~~~~~~~~~~~~~--~~~~   63 (223)
T d1hj9a_           1 IVGGYTCGANTVPYQVSLNS-----GYHFCGGSLINSQWVVSAAHCYKSG----------IQVRLGEDNINVVE--GNEQ   63 (223)
T ss_dssp             CCSCEECCTTSSTTEEEEES-----SSEEEEEEEEETTEEEECGGGCCSS----------CEEEESCSSTTSCC--SCCE
T ss_pred             CCCCEECCCCCCCeEEEEEC-----CCEEEEEEEeeCCEEEeCeeECCCc----------Ccceeccccccccc--ceee
Confidence            78999999999999999953     1678999999999999999999642          35567777665544  5568


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...+..+++||.|+.....||||||+|++++.+++.++|+||+.......       . .|. ..||+....... ....
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~cl~~~~~~~~-------~-~~~-~~g~~~~~~~~~-~~~~  133 (223)
T d1hj9a_          64 FISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAG-------T-QCL-ISGWGNTKSSGT-SYPD  133 (223)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCCCTT-------C-EEE-EEESSCCCSSSC-CCCS
T ss_pred             eeceeeEEeccccccccccchhhhhhcccceeeeeeeecccccccccccc-------c-eEE-EEeeccccCCCC-CCCc
Confidence            89999999999999999999999999999999999999999998765221       1 122 234433221111 1123


Q ss_pred             eeeEEEEeecCeeeccccce--------EEec--CCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKHY--------VVFT--DVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~--------~~~~--~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .++...+.+.+.+.|...+.        +...  .....|.||+||||++.    ++|+||+|+     +..+|....+.
T Consensus       134 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~gd~g~pl~~~----~~L~Gi~S~-----g~~c~~~~~p~  204 (223)
T d1hj9a_         134 VLKCLKAPILSDSSCKSAYPGQITSNMFCAYGLEGKGDSCQGDSGGPVVCS----GKLQGIVSW-----GSGCQAKNKPG  204 (223)
T ss_dssp             SCEEEEEECCCHHHHHHHSTTTCCTTEEECCCCCCCCCCCTTCTTCEEEET----TEEEEEEEE-----CSCCCCCCCCC
T ss_pred             cceEEEEeecCHHHHHHHhCCcccccceEEeecCCCcccccCCCCceeEEe----CEEEEEEEE-----cCCCCCCCCCE
Confidence            35566777788888864321        2211  23578999999999984    589999998     44455556778


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       205 vyt~v~~  211 (223)
T d1hj9a_         205 VYTKVCN  211 (223)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            9998765

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=9.2e-35  Score=248.32  Aligned_cols=200  Identities=27%  Similarity=0.375  Sum_probs=143.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|++++|||+|+|+. +    .++|+||||+++||||||||+.+.        ....+..+..  ....  ....
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~-~----~~~C~GtLIs~~~VLTAAhCv~~~--------~~~~~~~~~~--~~~~--~~~~   63 (222)
T d1hj8a_           1 IVGGYECKAYSQPHQVSLNS-G----YHFCGGSLVNENWVVSAAHCYKSR--------VEVRLGEHNI--KVTE--GSEQ   63 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEES-S----SEEEEEEEEETTEEEECGGGCCSS--------CEEEESCSBT--TSCC--SCCE
T ss_pred             CCCCEECCCCCCCeEEEEEC-C----CEEEEEEEeeCCEEEeCceecccc--------cCcceeeccc--cccC--Cccc
Confidence            79999999999999999953 1    678999999999999999999753        2233333322  2222  4445


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...+.+++.||.|......||||||+|++|+.+++.++|||||.....       .+. .+. ..||+.......  ...
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~diALl~l~~~v~~~~~~~picl~~~~~~-------~~~-~~~-~~g~~~~~~~~~--~~~  132 (222)
T d1hj8a_          64 FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-------AGT-MCT-VSGWGNTMSSTA--DSN  132 (222)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSCCC-------TTC-EEE-EEESSCCCCSSC--CTT
T ss_pred             cccceEEEecccccccccCCcEEEEecccceeeeceeEEEECCCcCCC-------CCc-eEE-EEeccccccccc--ccc
Confidence            677788999999999999999999999999999999999999876652       122 122 244443322111  122


Q ss_pred             eeeEEEEeecCeeecccc--------ceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTK--------HYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~--------~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .++...+.+.+.+.|...        ..|+.  ....+.|.||+||||++.    ++|+||+|++     ..+|....+.
T Consensus       133 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~C~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g-----~~~~~~~~p~  203 (222)
T d1hj8a_         133 KLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCN----GELQGVVSWG-----YGCAEPGNPG  203 (222)
T ss_dssp             BCEEEEEEBCCHHHHHHHSTTCCCTTEEEESCTTSSCBCCTTCTTCEEEET----TEEEEEEEEC-----SSSSCTTCCE
T ss_pred             ccEEEEEEEeCHHHHhhhcccccccceEEEccCCCCcccccCCcccEEEEC----CEEEEEEEEe-----cCCCCCCCCE
Confidence            345667777788888642        22332  223568999999999984    4999999994     4455566788


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       204 v~t~v~~  210 (222)
T d1hj8a_         204 VYAKVCI  210 (222)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            9998765

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-34  Score=244.68  Aligned_cols=202  Identities=28%  Similarity=0.406  Sum_probs=145.5

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|.+++|||+|+|+...    .++|+||||+++||||||||+...          ..+...........  ....
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhC~~~~----------~~~~~~~~~~~~~~--~~~~   64 (225)
T d1npma_           1 ILEGRECIPHSQPWQAALFQGE----RLICGGVLVGDRWVLTAAHCKKQK----------YSVRLGDHSLQSRD--QPEQ   64 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGCCSS----------CEEEESCSBTTC----CCCE
T ss_pred             CCCCEECCCCCCCCEEEEEECC----cEEEEEEEEcCCEEEEchHhCccc----------cccccccccccccC--CCcc
Confidence            7999999999999999998643    789999999999999999999752          23333333333222  4456


Q ss_pred             eeeeeEEEECCCC---CCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCee
Q psy15989        100 NKQVKRVHIYPTF---NSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAW  176 (363)
Q Consensus       100 ~~~V~~i~~hp~y---~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~  176 (363)
                      ...+..+..||.|   +..+..||||||+|++|+.+++.++|||||.......        ..|. ..||+.....+. .
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~~~~~~~--------~~~~-~~g~g~~~~~~~-~  134 (225)
T d1npma_          65 EIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVG--------QKCI-ISGWGTVTSPQE-N  134 (225)
T ss_dssp             EECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCCCTT--------CEEE-EEESSCSSSSSC-C
T ss_pred             eeeeeeeEEEEeeeccCcccchhhhhhhhccccccccccccccccccccccCC--------ceEE-EeccceecCCCC-C
Confidence            7778888888855   4566789999999999999999999999998776221        1232 456654322111 1


Q ss_pred             EEeeeeEEEEeecCeeeccc--------cceEEe-cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceec-CCC
Q psy15989        177 YLRGIVSITVARDGLRVCDT--------KHYVVF-TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVC-DTK  246 (363)
Q Consensus       177 ~~~~l~~~~~~~~~~~~C~~--------~~~~~~-~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c-~~~  246 (363)
                      ....++...+.+.+.+.|..        ...|.. ....+.|.||+||||+++    |+|+||+|++     ...| ...
T Consensus       135 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~C~~~~~~~~~c~gd~G~pl~~~----~~l~Gi~S~g-----~~~c~~~~  205 (225)
T d1npma_         135 FPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQGDSGGPLVCD----GMLQGITSWG-----SDPCGKPE  205 (225)
T ss_dssp             CCSBCEEEEEEECCHHHHHHHSTTTCCTTEEEEECTTCCBCCTTCTTCEEEET----TEEEEEEEEC-----CSSSCBTT
T ss_pred             CCCccEEEEEEEecHHHHhhhccCCcCCCEEEecCCCCCccccCCCCceEEEc----cEEEEEEEEC-----CCCCCCCC
Confidence            22345677788888888953        223443 334678999999999984    6999999994     3444 445


Q ss_pred             cceEEEeeeE
Q psy15989        247 HYVVFTDVKR  256 (363)
Q Consensus       247 ~~~v~~~V~~  256 (363)
                      .+.+|++|..
T Consensus       206 ~p~vyt~V~~  215 (225)
T d1npma_         206 KPGVYTKICR  215 (225)
T ss_dssp             BCEEEEEHHH
T ss_pred             CCEEEEEHHH
Confidence            6788988764

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=5.3e-35  Score=250.83  Aligned_cols=205  Identities=28%  Similarity=0.421  Sum_probs=151.7

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.++||||+|+|.....   .++|+||||+++||||||||+....      .....+..+.....    ....+
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~---~~~C~GtLIs~~~VLTaAhCv~~~~------~~~~~~~~~~~~~~----~~~~~   67 (228)
T d1fxya_           1 IVGGYNCKDGEVPWQALLINEEN---EGFCGGTILSEFYILTAAHCLYQAK------RFKVRVGDRNTEQE----EGGEA   67 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTS---CEEEEEEECSSSEEEECGGGTTSCS------SCEEEEECSCTTTC----CCCEE
T ss_pred             CCCCEECCCCCCCcEEEEEEcCC---CeEEEEEEeeCCEEEECceeeeccc------cccccccccccccc----CCcce
Confidence            78999999999999999976432   6889999999999999999997642      23344444433222    24556


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.+..++.||.|......+||||++|++++.++++++|||||......       +. .|. ..||+........ ...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~diAl~~l~~~~~~~~~~~picL~~~~~~~-------~~-~~~-~~gwg~~~~~~~~-~~~  137 (228)
T d1fxya_          68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPAT-------GT-KCL-ISGWGNTASSGAD-YPD  137 (228)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCCCT-------TC-EEE-EEESSCCCSSSCC-CCS
T ss_pred             eeeeeccceeeeeeccccccceeehhccccccccccccccccccccccc-------cc-EEE-EEecccccCCCCC-CCc
Confidence            7788899999999999999999999999999999999999999877622       22 333 4566654332111 123


Q ss_pred             eeeEEEEeecCeeeccccc--------eEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcce
Q psy15989        180 GIVSITVARDGLRVCDTKH--------YVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYV  249 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~--------~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~  249 (363)
                      .|+...+.+++.+.|...+        .++.  ......|.||+||||+++    ++|+||+|+     +..+|....+.
T Consensus       138 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~----~~l~Gi~s~-----g~~~~~~~~p~  208 (228)
T d1fxya_         138 ELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCN----GQLQGVVSW-----GDGCAQKNKPG  208 (228)
T ss_dssp             SCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCTTCSCBCCTTCTTCEEEET----TEEEEEEEE-----CSSSSBTTBCE
T ss_pred             hhEEEEEEEeCHHHHhhhcCCcccceeeEeecCCCCcccccCccCccEEEe----CEEEEEEEE-----CCCCCCCCCCE
Confidence            4667788888999996322        2222  234678999999999984    599999999     44455567788


Q ss_pred             EEEeeeE
Q psy15989        250 VFTDVKR  256 (363)
Q Consensus       250 v~~~V~~  256 (363)
                      +|++|..
T Consensus       209 vft~v~~  215 (228)
T d1fxya_         209 VYTKVYN  215 (228)
T ss_dssp             EEEEGGG
T ss_pred             EEEEHHH
Confidence            9998765

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-34  Score=247.60  Aligned_cols=206  Identities=26%  Similarity=0.429  Sum_probs=147.4

Q ss_pred             CCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEEC
Q psy15989         30 QWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIY  109 (363)
Q Consensus        30 ~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~h  109 (363)
                      +|||||+|+........|+|+||||+++||||||||+.+        .....|++|.............+.+.|.++++|
T Consensus         1 ~~PW~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~h   72 (232)
T d1fona_           1 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST--------SRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVH   72 (232)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCT--------TSCEEEEEEEEETTEEEEEEEEEEECTTSEEEC
T ss_pred             CCccEEEEEEeCCCceEEEEEEEEecCCEEEEChhhccC--------CCceEEEEEeccccccccccccccceeEEEEEc
Confidence            599999998887766788999999999999999999975        345777788776554332234457789999999


Q ss_pred             CCCCCCCC--CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEEe
Q psy15989        110 PTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITVA  187 (363)
Q Consensus       110 p~y~~~~~--~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~~  187 (363)
                      |+|+....  .+|||||+|++|+.|++.++|||||......      .....+. ..||+.....+.  ....+....+.
T Consensus        73 p~~~~~~~~~~~diAll~l~~~~~~~~~~~pic~~~~~~~~------~~~~~~~-~~g~~~~~~~~~--~~~~~~~~~~~  143 (232)
T d1fona_          73 PLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDIL------PNEAPCY-ISGWGRLYTGGP--LPDKLQQALLP  143 (232)
T ss_dssp             TTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCC------CTTCCCE-EEECTTCCCSSS--CCSBCEEEECC
T ss_pred             cCccccccccccceeeeecccceEEeecceeeecCcccccC------CCCceeE-eeccccccCCCC--CCCcceEEEEE
Confidence            99987654  4999999999999999999999998766511      1111222 234443322111  12345556666


Q ss_pred             ecCeeecccc----------ceEEecCCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecC-CCcceEEEeee
Q psy15989        188 RDGLRVCDTK----------HYVVFTDVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCD-TKHYVVFTDVK  255 (363)
Q Consensus       188 ~~~~~~C~~~----------~~~~~~~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~-~~~~~v~~~V~  255 (363)
                      +++.+.|...          ..+........|.||+||||++.. +++|+|+||+|+..    ...|+ ...|.+|++|.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~gdsGgpl~~~~~~~~~~L~Gi~s~~~----~~~c~~~~~p~vyt~V~  219 (232)
T d1fona_         144 TVDYEHCSQWDWWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVS----AFGCNTIKKPTVFTRVS  219 (232)
T ss_dssp             EECHHHHTSTTTTGGGCCTTEEEECCSSSCSTTSCTTCEEEEECSSSCEEEEEEEEECC----TTCSSBTTBCEEEEEGG
T ss_pred             EEcHHHhhhhhccCceeeeceeeeccccccccccCCCCceEEEccCCCEEEEEEEEEcC----CCCCCCCCCCEEEEEHH
Confidence            6776667532          224455566789999999999875 67899999999852    23364 45678999886


Q ss_pred             E
Q psy15989        256 R  256 (363)
Q Consensus       256 ~  256 (363)
                      .
T Consensus       220 ~  220 (232)
T d1fona_         220 A  220 (232)
T ss_dssp             G
T ss_pred             H
Confidence            5

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=1.1e-33  Score=243.55  Aligned_cols=200  Identities=24%  Similarity=0.385  Sum_probs=141.6

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|+++||||||+|+.      .++|+||||+++||||||||+.+.          ..+.+.........  ....
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~------~~~C~GtLIs~~~VLTaAhCv~~~----------~~~~~~~~~~~~~~--~~~~   62 (235)
T d1tona_           1 IVGGYKCEKNSQPWQVAVIN------EYLCGGVLIDPSWVITAAHCYSNN----------YQVLLGRNNLFKDE--PFAQ   62 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES------SSEEEEEEEETTEEEECGGGCCSC----------CEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCeEEEEcC------CeEEEEEEecCCEEEECceecCCC----------CceEEeeeeeecCC--Ccee
Confidence            79999999999999999973      579999999999999999999642          24444444433322  4445


Q ss_pred             eeeeeEEEECCCCCC-----------CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccc
Q psy15989        100 NKQVKRVHIYPTFNS-----------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM  168 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~-----------~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~  168 (363)
                      ...+.++..|++|..           ....||||||+|++|+.|++.++|+||+.......       . .+. ..||+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~i~~i~l~~~~~~~~-------~-~~~-~~g~g~  133 (235)
T d1tona_          63 RRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVG-------S-TCL-ASGWGS  133 (235)
T ss_dssp             EECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCCCTT-------C-EEE-EEESSC
T ss_pred             EeeeeeeeeeeeceeeeeeecccccccccccceeEEEecCccccCCccccccccccccccc-------c-eeE-EEEccc
Confidence            667777777777743           45679999999999999999999999987765221       1 111 234443


Q ss_pred             eEEecCeeEEeeeeEEEEeecCeeeccccc--------eEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecC
Q psy15989        169 VFKIDSAWYLRGIVSITVARDGLRVCDTKH--------YVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARD  238 (363)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~--------~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~  238 (363)
                      ....... ....++.+.+.+++.+.|...+        .+..  ...++.|.||+||||+++    |+|+||+|++    
T Consensus       134 ~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~g----  204 (235)
T d1tona_         134 TNPSEMV-VSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSGG----  204 (235)
T ss_dssp             SSSSSCC-CCSBCEEEEEEEECGGGCGGGGSTTGGGGEEEEECTTCSCBCCTTCTTCEEEET----TEEEEEECCC----
T ss_pred             ccccccc-ccccceeeeeeeeCHHHHHHHhCCCCCCCceEeCcCCCCccccCCCcCCeEEEc----CEEEEEEEeC----
Confidence            3222111 1224556777777888887432        2332  234579999999999984    5999999984    


Q ss_pred             cceec-CCCcceEEEeeeE
Q psy15989        239 GLRVC-DTKHYVVFTDVKR  256 (363)
Q Consensus       239 g~~~c-~~~~~~v~~~V~~  256 (363)
                       ...| ....+.+|++|..
T Consensus       205 -~~~c~~~~~p~vyt~v~~  222 (235)
T d1tona_         205 -ATPCAKPKTPAIYAKLIK  222 (235)
T ss_dssp             -CSSCSCTTCCEEEEEGGG
T ss_pred             -CCCCCCCCCCeEEEEHHH
Confidence             3334 5567889998865

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=100.00  E-value=5.4e-34  Score=245.44  Aligned_cols=204  Identities=23%  Similarity=0.357  Sum_probs=140.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.++||||+|+|+...    .++|+||||+++||||||||+...        .  .+.+......... .....
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~----~~~C~G~LIs~~~VLTaAhCv~~~--------~--~~~~~~~~~~~~~-~~~~~   65 (234)
T d1op0a_           1 VIGGNECDINEHRFLVAFFNTT----GFFCGGTLINPEWVVTAAHCDSTD--------F--QMQLGVHSKKVLN-EDEQT   65 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----EEEEEEEEEETTEEEECGGGCCSS--------C--EEEESCSCSSSCC-TTCEE
T ss_pred             CCCCEECCCCCcCcEEEEEECC----cEEEEEEEEcCCEEEECceeCCCC--------C--ccccceeeccccC-Cccee
Confidence            7999999999999999998653    789999999999999999999653        1  2223333322222 12233


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      ...+...+.|+.|+.....||||||||++|+.|+++++|||||......       + ..+. ..||+........ ...
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~DiaLl~L~~~v~~~~~i~picl~~~~~~~-------~-~~~~-~~g~~~~~~~~~~-~~~  135 (234)
T d1op0a_          66 RNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSV-------G-SVCR-IMGWGSITPVKET-FPD  135 (234)
T ss_dssp             ECEEEEEECTTCCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCCCT-------T-CEEE-EEESSCSSSSSCC-CCS
T ss_pred             eeeeeeccccccccccccchhhhhhhcCCceeccceeecccccccCccc-------c-eEEE-Eeeeccccccccc-ccc
Confidence            4445677888999999999999999999999999999999999766521       1 1222 3444322111111 122


Q ss_pred             eeeEEEEeecCeeeccccce---------EEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecC-CCc
Q psy15989        180 GIVSITVARDGLRVCDTKHY---------VVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCD-TKH  247 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~---------~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~-~~~  247 (363)
                      .++...+.+++...|...+.         +..  ....+.|.||+||||++.    ++|+||+|++     ...|+ ...
T Consensus       136 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~Pl~~~----~~l~Gi~S~g-----~~~c~~~~~  206 (234)
T d1op0a_         136 VPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLICN----GQFQGIVSYG-----AHPCGQGPK  206 (234)
T ss_dssp             SCEEEEEEEECHHHHHHHCTTCCTTSCEEEEECTTCCCBCCTTCTTCEEEET----TEEEEEEEEC-----CSSTTCTTS
T ss_pred             ccccccceEechHHhcccccCcceeeeeeeecccccccccccCCCCceEEEc----CEEEEEEEEc-----CCCCCCCCC
Confidence            34455666677777863221         111  134678999999999984    5999999983     34454 455


Q ss_pred             ceEEEeeeEE
Q psy15989        248 YVVFTDVKRV  257 (363)
Q Consensus       248 ~~v~~~V~~i  257 (363)
                      +.+|++|..+
T Consensus       207 p~vft~v~~y  216 (234)
T d1op0a_         207 PGIYTNVFDY  216 (234)
T ss_dssp             CEEEEESGGG
T ss_pred             CeEEEEHHHH
Confidence            7889988653

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=100.00  E-value=7.3e-34  Score=242.89  Aligned_cols=199  Identities=24%  Similarity=0.305  Sum_probs=132.2

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||++|++++|||+|+|.        ++|+||||+++||||||||+.+..     ....+.|.+|..+...    .  .
T Consensus         1 ~~gG~~~~~~~~Pw~v~l~--------~~C~GtLIs~~~VLTaAhCv~~~~-----~~~~~~v~~g~~~~~~----~--~   61 (223)
T d1os8a_           1 VVGGTRAAQGEFPFMVRLS--------MGCGGALYAQDIVLTAAHCVSGSG-----NNTSITATGGVVDLQS----S--S   61 (223)
T ss_dssp             CBSCEECCTTSSTTEEEET--------TTEEEEEEETTEEEECGGGSSCSE-----ECCCCEEEESCSBTTC----T--T
T ss_pred             CCCCEECCCCCCCcEEEEe--------ccEeEEEEeCCEEEEChhhccCCC-----Ccceeeeccccccccc----c--c
Confidence            7999999999999999993        459999999999999999997532     3456788999887642    2  2


Q ss_pred             eeeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEe
Q psy15989        100 NKQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLR  179 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~  179 (363)
                      .+.++.+.+||.|+.....||||||||++++.++..+.|.+++....            .+. ..||.......  ....
T Consensus        62 ~~~i~~~~i~~~~~~~~~~~DIAllkL~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~--~~~~  126 (223)
T d1os8a_          62 AVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQG------------TFT-VAGWGANREGG--SQQR  126 (223)
T ss_dssp             CEEEEEEEEEECTTCSSSSCCCEEEEESSCCCSCCCEECCSSTTSSS------------EEE-EEESSCSSTTC--CCCS
T ss_pred             cccceeeeeeecccccccceeeeeeeeeeeeeccccccccccccccc------------ceE-Eeecccccccc--cccc
Confidence            34455566666666667789999999999988754333333322221            111 12222111000  0112


Q ss_pred             eeeEEEEeecCeeeccccce---------EEe---cCCCccCcccccceeEEEE-cCccEEEEEEEEEEecCcceecCCC
Q psy15989        180 GIVSITVARDGLRVCDTKHY---------VVF---TDVANVCNGDSGGGMVFKI-DSAWYLRGIVSITVARDGLRVCDTK  246 (363)
Q Consensus       180 ~l~~~~~~~~~~~~C~~~~~---------~~~---~~~~~~C~gdsGgpl~~~~-~~~~~l~Gi~s~~~~~~g~~~c~~~  246 (363)
                      .+....+..++...|...+.         +..   ....+.|.+|+|+||++.. .++|+|+||+|+     +..+|...
T Consensus       127 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~G~pl~~~~~~~~~~L~Gi~s~-----~~~c~~~~  201 (223)
T d1os8a_         127 YLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSW-----GYGCARPG  201 (223)
T ss_dssp             BCEEEEEEEECHHHHHHHHGGGSCTTTEEEESCTTTCCCBCCTTCTTCEEEEECTTSCEEEEEEEEE-----CSSSSCTT
T ss_pred             ccccceeeEeCHHHhhhhhcCCCccCcceeeeccccCCcCccccccccceEEecCCCeEEEEEEEEe-----CCCCCCCC
Confidence            34455666677778853221         111   1235789999999999875 568999999998     44444556


Q ss_pred             cceEEEeeeEE
Q psy15989        247 HYVVFTDVKRV  257 (363)
Q Consensus       247 ~~~v~~~V~~i  257 (363)
                      .+.+|++|..+
T Consensus       202 ~p~vft~V~~y  212 (223)
T d1os8a_         202 YPGVYTEVSTF  212 (223)
T ss_dssp             CCEEEEEHHHH
T ss_pred             CCEEEEEHHHH
Confidence            78899988653

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=1.3e-32  Score=237.06  Aligned_cols=204  Identities=25%  Similarity=0.404  Sum_probs=143.8

Q ss_pred             eecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCce
Q psy15989         20 VTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQ   99 (363)
Q Consensus        20 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~   99 (363)
                      |+||.+|.++||||+|+|+...    .++|+||||+++||||||||+.+.          ...+.....+....  ...+
T Consensus         1 i~gG~~~~~~e~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~~----------~~~~~~~~~~~~~~--~~~~   64 (237)
T d1gvza_           1 IIGGWECEKHSKPWQVAVYHQG----HFQCGGVLVHPQWVLTAAHCMSDD----------YQIWLGRHNLSKDE--DTAQ   64 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----EEEEEEEEEETTEEEECGGGCCSS----------CEEEESCSBTTSCC--TTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC----eEEEEEEEEeCCEEEeChhhccCC----------CceeEeeeeecccc--Ccce
Confidence            7899999999999999998654    789999999999999999999753          12233344433332  4567


Q ss_pred             eeeeeEEEECCCCCC-----------CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccc
Q psy15989        100 NKQVKRVHIYPTFNS-----------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGM  168 (363)
Q Consensus       100 ~~~V~~i~~hp~y~~-----------~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~  168 (363)
                      ...+.+.+.|+.|+.           ....+|||||||++|+.|++.++|+|||........        .+. ..||+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~~~~~~~~~--------~~~-~~g~g~  135 (237)
T d1gvza_          65 FHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGS--------TCY-TSGWGL  135 (237)
T ss_dssp             EECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTC--------EEE-EEEEEC
T ss_pred             eeeeeeEEeeeeeeeeeeecccccCccccccceEEEEECCceecccccccccccccccccce--------eEE-EEeeee
Confidence            788999999998853           234799999999999999999999999976652211        122 233333


Q ss_pred             eEEecCeeEEeeeeEEEEeecCeeeccccce--------EEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecC
Q psy15989        169 VFKIDSAWYLRGIVSITVARDGLRVCDTKHY--------VVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARD  238 (363)
Q Consensus       169 ~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~--------~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~  238 (363)
                      ....... ....++...+.+.+...|...+.        +..  ......|.||+||||++.    ++|+||+|++.   
T Consensus       136 ~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~----~~l~Gv~s~g~---  207 (237)
T d1gvza_         136 ISTFTNR-GSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSWGY---  207 (237)
T ss_dssp             SCTTTCS-EEEEEEEEEEEEECGGGGCSSCGGGCCTTEEEEECSSTTCEECGGGTTCEEEET----TEEEEEECCCS---
T ss_pred             ecccccc-ccceeeEEEEEeecHHHHHhhcccccccccccceecccccccccCCCCCcEEEc----CEEEEEEEecc---
Confidence            2111111 23346677778888888975321        222  234678999999999984    49999999842   


Q ss_pred             cceecCCCcceEEEeeeEE
Q psy15989        239 GLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       239 g~~~c~~~~~~v~~~V~~i  257 (363)
                       ..+|....+.+|++|..+
T Consensus       208 -~~c~~~~~p~v~t~v~~y  225 (237)
T d1gvza_         208 -SECADFNDNFVFTKVMPH  225 (237)
T ss_dssp             -SSCEETTTSCCEEESGGG
T ss_pred             -CCCCCCCCCeEEEEHHHH
Confidence             123345567888887653

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.9e-31  Score=228.46  Aligned_cols=194  Identities=29%  Similarity=0.452  Sum_probs=124.4

Q ss_pred             CCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeE---
Q psy15989         29 GQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKR---  105 (363)
Q Consensus        29 ~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~---  105 (363)
                      +++||||+|+..+    .++|+||||+++||||||||+.+          ...+++|...+....  ...+...+..   
T Consensus         1 ~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhCv~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   64 (228)
T d1sgfa_           1 NSQPWHVAVYRFN----KYQCGGVLLDRNWVLTAAHCYND----------KYQVWLGKNNFLEDE--PSDQHRLVSKAIP   64 (228)
T ss_dssp             CCCTTEEEEECTT----SCCEEEEECSSSEEEECGGGCCS----------CCEEEECC----C-C--TTCEEEEEEEEEE
T ss_pred             CCCCcEEEEEECC----cEEEEEEEEcCCEEEeCHHHccC----------CceEEEeeeeecccc--ccceeeeeeeecc
Confidence            4689999998654    68899999999999999999964          245777777654432  2223333333   


Q ss_pred             --------EEECCCCCCCCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeE
Q psy15989        106 --------VHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWY  177 (363)
Q Consensus       106 --------i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~  177 (363)
                              +..|+.|+.....+|||||+|++|+.|++.++|||||......       . ..+. ..||+....... ..
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~v~pi~l~~~~~~~-------~-~~~~-~~g~~~~~~~~~-~~  134 (228)
T d1sgfa_          65 HPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKL-------G-STCL-ASGWGSTTPIKF-KY  134 (228)
T ss_dssp             CTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCCCT-------T-CEEE-EC-------C-----
T ss_pred             ccceeeeeecccCCCCccccccceeEEeeccccccCCceeeEecCcccccc-------C-cceE-EEeeeeccCCcc-CC
Confidence                    5588999999999999999999999999999999999876622       1 1222 355554332211 12


Q ss_pred             EeeeeEEEEeecCeeeccccce--------EEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCc
Q psy15989        178 LRGIVSITVARDGLRVCDTKHY--------VVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKH  247 (363)
Q Consensus       178 ~~~l~~~~~~~~~~~~C~~~~~--------~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~  247 (363)
                      ...++...+.+.+.+.|.....        +..  ......|.+|+||||++.    ++|+||+|++.    ..+|....
T Consensus       135 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~----~~l~Gv~S~g~----~~c~~~~~  206 (228)
T d1sgfa_         135 PDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSWGP----EPCGEPTE  206 (228)
T ss_dssp             -----CEEEEEECTHHHHTTCSSBCCTTEEEEEECSSSEEECCCCTTCEEEET----TEEEEEECCCC----SSCCCSSC
T ss_pred             CCccEEEEEEEeCHHHhhhhccCCcccceEEeccCCCCccccCCCcCCcEEEe----CEEEEEEEECC----CCCCCCCC
Confidence            3446667777888888964222        221  223568999999999984    49999999842    12345667


Q ss_pred             ceEEEeeeE
Q psy15989        248 YVVFTDVKR  256 (363)
Q Consensus       248 ~~v~~~V~~  256 (363)
                      +.+|++|..
T Consensus       207 p~vyt~V~~  215 (228)
T d1sgfa_         207 PSVYTKLIK  215 (228)
T ss_dssp             CEEEEESGG
T ss_pred             CeEEEEHHH
Confidence            889998865

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.80  E-value=3.9e-21  Score=162.01  Aligned_cols=176  Identities=15%  Similarity=0.174  Sum_probs=108.1

Q ss_pred             CCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEE
Q psy15989         28 RGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVH  107 (363)
Q Consensus        28 ~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~  107 (363)
                      ...|||++.++...+   .+.|+|+||+++||||||||+.......  ....+.+.+|.....     .......+.+++
T Consensus        14 ~~~~P~~~~~~i~~~---~~~CsG~LI~~~~VLTaaHCv~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   83 (215)
T d1p3ca_          14 TRVAPYNSIAYITFG---GSSCTGTLIAPNKILTNGHCVYNTASRS--YSAKGSVYPGMNDST-----AVNGSANMTEFY   83 (215)
T ss_dssp             TTSTTGGGEEEEECS---SCEEEEEEEETTEEEECHHHHEETTTTE--ECCCCEEEETCBTTB-----CTTCCEEEEEEE
T ss_pred             CCCCCcEEEEEEEcC---CeEEEEEEEeCCEEEECcceeccCCCCc--eeeeEEEeccccCCC-----CCceeEEEeEEE
Confidence            577999988876543   4579999999999999999998654322  223466777765543     334567899999


Q ss_pred             ECCCCCC-CCCCCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeeeEEEE
Q psy15989        108 IYPTFNS-SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIVSITV  186 (363)
Q Consensus       108 ~hp~y~~-~~~~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~~~~~  186 (363)
                      .||.|.. ....+|+|||+|+.++.+.  ..+++++....       ..+ ..|. ..|||...........  ......
T Consensus        84 ~~~~~~~~~~~~~DiAll~l~~~~~~~--~~~~~~~~~~~-------~~~-~~~~-~~G~~~~~~~~~~~~~--~~~~~~  150 (215)
T d1p3ca_          84 VPSGYINTGASQYDFAVIKTDTNIGNT--VGYRSIRQVTN-------LTG-TTIK-ISGYPGDKMRSTGKVS--QWEMSG  150 (215)
T ss_dssp             CCHHHHHHCCGGGCCEEEEESSCHHHH--HCCCCBCCCSC-------CTT-CEEE-EEECCHHHHHHHSSCC--CEEEEE
T ss_pred             EecccccCCCccceEEEEEeccCCCcc--ccccccccccc-------cCC-ceeE-EEcCCCCcCCCcccce--eeEeee
Confidence            9998854 3457899999999987754  34555554433       112 2333 3555532111000000  000000


Q ss_pred             eecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        187 ARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       187 ~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      .. ....+.     ......+.|.|||||||+   +..++|+||+|++.
T Consensus       151 ~~-~~~~~~-----~~~~~~~~~~G~SGgPl~---~~~~~lvGi~s~g~  190 (215)
T d1p3ca_         151 SV-TREDTN-----LAYYTIDTFSGNSGSAML---DQNQQIVGVHNAGY  190 (215)
T ss_dssp             EC-CEECSS-----EEEECCCCCTTCTTCEEE---CTTSCEEEECCEEE
T ss_pred             cc-cccccc-----cceeecccCCCCccCeEE---CCCCEEEEEEEecc
Confidence            00 000111     122345689999999998   45679999999853

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.80  E-value=1.1e-20  Score=164.48  Aligned_cols=177  Identities=18%  Similarity=0.070  Sum_probs=90.0

Q ss_pred             eEEEEEEEee------CCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCC--
Q psy15989         46 SYVCGGSLVS------VNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNY--  117 (363)
Q Consensus        46 ~~~CgGsLIs------~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~--  117 (363)
                      .++||||||+      ++||||||||+.+.      ....+.+++|......     ......+.+..+|+.|+....  
T Consensus        33 ~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~------~~~~~~v~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  101 (263)
T d1arba_          33 TLACTGSLVNNTANDRKMYFLTAHHCGMGT------ASTAASIVVYWNYQNS-----TCRAPNTPASGANGDGSMSQTQS  101 (263)
T ss_dssp             EEEEEEEEBCCTTCCCCCEEEEEGGGSCCS------HHHHHTCEEEESCCCS-----SCCCTTSGGGGSCCCCCCCCEEE
T ss_pred             cEEEEEEEECCCCCCccceEEEchhhCCCC------CCcceEEEEEEEeecc-----cceeeeeeeeecccCccceeeec
Confidence            8999999998      77999999999753      1223445555444332     122333445566777765444  


Q ss_pred             ---------CCCeEEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCee-EEeeeeEEEEe
Q psy15989        118 ---------LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAW-YLRGIVSITVA  187 (363)
Q Consensus       118 ---------~nDIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~-~~~~l~~~~~~  187 (363)
                               .+||||++|+.+++....+....+...                  ..+|+......... .+..+......
T Consensus       102 ~~~l~~~~~~~Diall~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (263)
T d1arba_         102 GSTVKATYATSDFTLLELNNAANPAFNLFWAGWDRR------------------DQNYPGAIAIHHPNVAEKRISNSTSP  163 (263)
T ss_dssp             CEEEEEEETTTTEEEEEESSCCCGGGCCEEBCEECC------------------SCCCSCEEEEECGGGCSCEEEEECSC
T ss_pred             chheeecCCCcceeeeecccccccccceeeeccCcc------------------ccCCccccceeccccceeeeeccccc
Confidence                     456666666665544333222222111                  12222221111000 00000000000


Q ss_pred             ecCeeecc---ccceEEe--cCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeE
Q psy15989        188 RDGLRVCD---TKHYVVF--TDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKR  256 (363)
Q Consensus       188 ~~~~~~C~---~~~~~~~--~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~  256 (363)
                      ........   ....+..  ....+.|.|||||||++..   +.++|++|+.....  ..|....|.+|++|..
T Consensus       164 ~~~~~~~~~~~~~~~c~~~~~~~~~~c~GDSGGPL~~~~---g~~vGvvsgg~s~c--~~c~~~~p~vYtrV~~  232 (263)
T d1arba_         164 TSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPE---KRVLGQLHGGPSSC--SATGTNRSDQYGRVFT  232 (263)
T ss_dssp             CEEECTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECTT---SCEEEEEEECSCCT--TCCGGGSEEEEEEHHH
T ss_pred             chhhccCCCCCccEEEEEecCCCccccCCCCcceEEecC---CCEEEEEEEEEeCC--cCCCCCCCceEEEEEE
Confidence            00000000   1112222  2235689999999998542   36899999854322  1355677999999865

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.1e-15  Score=128.79  Aligned_cols=104  Identities=26%  Similarity=0.421  Sum_probs=86.6

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--CCccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--DRVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--~~~~~  325 (363)
                      ......+..++.||+|+.....+|||||+|++++.|+++++|||||+...       ..+..++++|||.+..  ...+.
T Consensus        61 ~~~~~~~~~~~~hp~y~~~~~~~diAll~L~~~v~~~~~~~picL~~~~~-------~~~~~~~~~g~g~~~~~~~~~~~  133 (223)
T d1j16a_          61 NEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCA-------PAGTQCLISGWGNTLSSGVNEPD  133 (223)
T ss_dssp             CCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCSSCC-------CTTCEEEEEESSCCCSSSCCCCS
T ss_pred             cceeeeeeeEEecCCCCccccceeEEEEEecCccccceeEEEEecCCcCC-------CCCCEEEEEeeeeeeCCCccCcc
Confidence            34566788899999999999999999999999999999999999997543       4578899999998642  24567


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .|+.+.+.++++++|+..    +...+.++++||+..
T Consensus       134 ~l~~~~~~~~~~~~C~~~----~~~~~~~~~~C~~~~  166 (223)
T d1j16a_         134 LLQCLDAPLLPQADCEAS----SSFIITDNMVCVGFL  166 (223)
T ss_dssp             BCEEEEEEEECHHHHHSS----SSCCCCTTEEEESCT
T ss_pred             eeeEEEEEEEEhhHhhcc----ccceeCCCceEEecC
Confidence            899999999999999854    334578899999754

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=128.44  Aligned_cols=110  Identities=25%  Similarity=0.363  Sum_probs=91.1

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ......+..++.||+|+..+..||||||+|++++.+++.++|||||.....     ...+..+.++|||.+. .+..++.
T Consensus        63 ~~~~~~~~~i~~hp~y~~~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~~-----~~~~~~~~~~g~g~~~~~~~~~~~  137 (232)
T d1orfa_          63 TKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDD-----VKPGTMCQVAGWGRTHNSASWSDT  137 (232)
T ss_dssp             TCEEECEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCC-----CCTTCEEEEEESSCSSSSSCCCSB
T ss_pred             ccccceEEEEEecccccccccCcceeEeeeccceeeeeeEeeeeecccccc-----cccCceeeeccccccCCcccCChh
Confidence            345667888999999999999999999999999999999999999865543     3567889999999885 4456788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ||++.++++++++|+..+.......+.++++||+..
T Consensus       138 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~C~~~~  173 (232)
T d1orfa_         138 LREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSL  173 (232)
T ss_dssp             CEEEEEEEECHHHHTSTTTTTTTTCCCTTEEEEECS
T ss_pred             heEEEeecCCHHHHhhhhhcccCccccCceEEeccC
Confidence            999999999999998654333344688999999764

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.55  E-value=7.6e-15  Score=125.29  Aligned_cols=184  Identities=19%  Similarity=0.161  Sum_probs=98.6

Q ss_pred             ceeecCeecCCCCCcceEEEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCC
Q psy15989         18 PLVTYGQKTARGQWPWHVALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGG   97 (363)
Q Consensus        18 ~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~   97 (363)
                      .++..-......++||.+..+.....  ..+|+|+||++++|||||||+.....    ....+.+..+............
T Consensus        28 ~~~~~v~~~~~~~~p~~~v~~i~~~g--~~~gTG~lI~~~~ILTa~Hvv~~~~~----~~~~~~~~~~~~~~~~~~~~~~  101 (242)
T d1agja_          28 ELFSKVDEKDRQKYPYNTIGNVFVKG--QTSATGVLIGKNTVLTNRHIAKFANG----DPSKVSFRPSINTDDNGNTETP  101 (242)
T ss_dssp             TTEEECCTTGGGSTTGGGEEEEEETT--TEEEEEEECSSSEEEECHHHHGGGTT----CGGGEEEEETCEECTTSCEECT
T ss_pred             HHhhhccccccccCCcccEEEEEeCC--CccEEEEEEeCCEEEEcccEeccCCC----ceEEEEEeecceecccceeeec
Confidence            34444455667889998654433221  56899999999999999999975432    1223444433332211110122


Q ss_pred             ceeeeeeEEEECCCCCCCCCCCCeEEEEeCCccc---CCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecC
Q psy15989         98 VQNKQVKRVHIYPTFNSSNYLGDIALLQLSSDVD---YSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDS  174 (363)
Q Consensus        98 ~~~~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~---~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~  174 (363)
                      ...+.+..+..+|.    ...+|||||+|+.+..   +.+.+.|+.|......      ..+. ... ..|||.......
T Consensus       102 ~~~~~~~~~~~~~~----~~~~D~All~l~~~~~~~~~~~~~~~~~l~~s~~~------~~G~-~v~-~~GyP~~~~~~~  169 (242)
T d1agja_         102 YGEYEVKEILQEPF----GAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDL------KDGD-KLE-LIGYPFDHKVNQ  169 (242)
T ss_dssp             TCCEEEEEEESCTT----CTTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTC------CTTC-EEE-EEECCTTTSTTC
T ss_pred             cceEEEEEEeeecC----CCcCcEEEEEeccccccccccccCcceeecccccc------cCCc-EEE-EEEcCCCCccce
Confidence            23455666665543    2356999999987643   3346888888654431      1121 111 344443111010


Q ss_pred             eeEEeeeeEEEEeecCeeeccccceEEecCCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        175 AWYLRGIVSITVARDGLRVCDTKHYVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       175 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      .+ ..   .....  ..     .....  .....+.|+||||++   +....++||++.+.
T Consensus       170 ~~-~~---~~~~~--~~-----~~~~~--~~~~~~~G~SGgPl~---~~~g~vVGI~~~~~  214 (242)
T d1agja_         170 MH-RS---EIELT--TL-----SRGLR--YYGFTVPGNSGSGIF---NSNGELVGIHSSKV  214 (242)
T ss_dssp             CE-EE---EEEEC--CG-----GGSEE--EECCCCGGGTTCEEE---CTTSEEEEEEEEEE
T ss_pred             eE-ec---ccccc--cc-----cccEE--EecccCCccCCCcEE---CCCCeEEEEEeEee
Confidence            10 00   01110  00     00011  123567899999998   33458999998754

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=122.78  Aligned_cols=107  Identities=30%  Similarity=0.446  Sum_probs=89.1

Q ss_pred             cceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccc
Q psy15989        247 HYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSE  325 (363)
Q Consensus       247 ~~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~  325 (363)
                      ...+.+.|.++++||+|+.....||||||||+.|++|++.++|||||.....     ...+..+...|||..+ ....+.
T Consensus        73 ~~~~~~~v~~i~~Hp~y~~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~  147 (241)
T d1eaxa_          73 PGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHV-----FPAGKAIWVTGWGHTQYGGTGAL  147 (241)
T ss_dssp             TTCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCC-----CCTTCEEEEEESSBSSTTSCBCS
T ss_pred             CCcEEEEEEEEEECCcccccccCCcccccccCCceecCcccceeeccccccc-----cccceeEEEeccCCccccccccc
Confidence            3467788999999999999999999999999999999999999999875543     2456788999999775 344567


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .|+++.++++++++|+..    +...+.++++|++.+
T Consensus       148 ~l~~~~~~~~~~~~C~~~----~~~~~~~~~~c~~~~  180 (241)
T d1eaxa_         148 ILQKGEIRVINQTTCENL----LPQQITPRMMCVGFL  180 (241)
T ss_dssp             BCEEEEEEECCHHHHHHH----STTTCCTTEEEEECT
T ss_pred             cceEEEEEEeCHHHHHHH----hCccccCccceeccC
Confidence            899999999999999865    344577889999754

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=99.50  E-value=3.2e-14  Score=119.58  Aligned_cols=103  Identities=32%  Similarity=0.511  Sum_probs=85.9

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .....+.+++.||.|......+|||||+|++|+.|++.++|||||....       ..+..+.+.|||.+. .......|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~diALl~l~~~v~~~~~~~picl~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~l  134 (222)
T d1hj8a_          62 EQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCA-------PAGTMCTVSGWGNTMSSTADSNKL  134 (222)
T ss_dssp             CEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSCC-------CTTCEEEEEESSCCCCSSCCTTBC
T ss_pred             cccccceEEEecccccccccCCcEEEEecccceeeeceeEEEECCCcCC-------CCCceEEEEecccccccccccccc
Confidence            3455667788999999999999999999999999999999999987543       457889999999875 34556789


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      +++.+.++++++|+..    +...+.+.+|||+..
T Consensus       135 ~~~~~~~~~~~~C~~~----~~~~~~~~~~C~~~~  165 (222)
T d1hj8a_         135 QCLNIPILSYSDCNNS----YPGMITNAMFCAGYL  165 (222)
T ss_dssp             EEEEEEBCCHHHHHHH----STTCCCTTEEEESCT
T ss_pred             EEEEEEEeCHHHHhhh----cccccccceEEEccC
Confidence            9999999999999865    345678899999754

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.4e-14  Score=118.06  Aligned_cols=101  Identities=22%  Similarity=0.416  Sum_probs=83.8

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ......+.++++||+|+..+..||||||+|..++.++++++|||||....       ..+..+.++|||.+.....+..|
T Consensus        62 ~~~~~~~~~~~~~p~y~~~~~~~diAll~l~~~~~~~~~v~pi~l~~~~~-------~~~~~~~~~Gwg~~~~~~~~~~l  134 (221)
T d1lo6a_          62 SQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCS-------ANTTSCHILGWGKTADGDFPDTI  134 (221)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTT-------CCCCEEEEEESSCCTTSSCCSBC
T ss_pred             cceeeeccccccCCCcccccccceeEEeecccccceeeeEEeccccccCC-------cccceEEEEecccccCCCCCccc
Confidence            44566788999999999999999999999999999999999999987543       45788999999988766677889


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEe
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCA  359 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCa  359 (363)
                      +.+.++++++++|++.+    ...+.++++|.
T Consensus       135 ~~~~~~~~~~~~C~~~~----~~~~~~~~~~~  162 (221)
T d1lo6a_         135 QCAYIHLVSREECEHAY----PGQITQNMLCA  162 (221)
T ss_dssp             EEEEEEEECHHHHHHHS----TTTCCTTEEEE
T ss_pred             eEEEEEEecHHHHHHHc----CCCccCCceee
Confidence            99999999999998653    33344555554

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=99.49  E-value=5.4e-14  Score=119.33  Aligned_cols=107  Identities=23%  Similarity=0.399  Sum_probs=88.4

Q ss_pred             CcceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcc
Q psy15989        246 KHYVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVS  324 (363)
Q Consensus       246 ~~~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~  324 (363)
                      ....+...|.++++||+|+.....||||||+|.+++.|++.++|||++....       ..+..+.++|||.+. .+..+
T Consensus        71 ~~~~~~~~v~~i~~h~~y~~~~~~~diAll~l~~~v~~~~~~~~i~~~~~~~-------~~~~~~~~~g~g~~~~~~~~~  143 (237)
T d2f91a1          71 EGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH-------TATGDVIVTGWGTTSEGGNTP  143 (237)
T ss_dssp             CSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-------CCCSEEEEEESCCSSTTCCCC
T ss_pred             cCcceeeeEEEEEEccccCCCccccceeeeccccccccCCceeeeeccccCc-------ccccceeeccccccCCCCcCC
Confidence            3455678899999999999999999999999999999999999999987653       346789999999985 44567


Q ss_pred             ccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      +.|+++.+.+++++.|+..+.   ...+.+.++|++..
T Consensus       144 ~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~~c~~~~  178 (237)
T d2f91a1         144 DVLQKVTVPLVSDEDCRADYG---ADEILDSMICAGVP  178 (237)
T ss_dssp             SBCEEEEEEEECHHHHHHHHC---TTTSCTTEEEECCT
T ss_pred             chheEEEEEEeCHHHHhhhcc---CCcccCceeEeecC
Confidence            889999999999999976432   23467888997653

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=8.1e-14  Score=118.02  Aligned_cols=106  Identities=25%  Similarity=0.508  Sum_probs=87.1

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ......|.++++||+|+.....||||||+|++|+.|+++++|||||.....     ...+..+.++|||... .+.....
T Consensus        69 ~~~~~~v~~~~~hp~~~~~~~~~diAli~L~~~v~~~~~~~picLp~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~  143 (235)
T d1ekbb_          69 QIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQV-----FPPGRICSIAGWGALIYQGSTADV  143 (235)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESSBSSTTSCBCSB
T ss_pred             ceeEeeeeeeeecccccccCccchhhhhhhcCceecCCceeeEECCCcccc-----CCcceEEEEecccccccCCccccc
Confidence            345678999999999999999999999999999999999999999976542     3567889999999875 3445678


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |++..+.+++.+.|...+   ......+.++|+..
T Consensus       144 l~~~~~~~~~~~~~~~~~---~~~~~~~~~~c~~~  175 (235)
T d1ekbb_         144 LQEADVPLLSNEKCQQQM---PEYNITENMVCAGY  175 (235)
T ss_dssp             CEEEEEEBCCHHHHHHHC---TTSCCCTTEEEECC
T ss_pred             ceeeEEEEecHHHhcccc---cccccCcccEEEEc
Confidence            999999999999997543   23346788999854

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=8.5e-14  Score=117.13  Aligned_cols=101  Identities=23%  Similarity=0.349  Sum_probs=81.2

Q ss_pred             EEeeeEEEEcCC---CCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC--CCCccc
Q psy15989        251 FTDVKRVHIYPT---FNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE--NDRVSE  325 (363)
Q Consensus       251 ~~~V~~ii~h~~---y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~--~~~~~~  325 (363)
                      ...+..+..||.   |+..+..||||||+|++|+.+++.++|+|||....       ..+..+.++|||.+.  .+..+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~~~~-------~~~~~~~~~g~g~~~~~~~~~~~  137 (225)
T d1npma_          65 EIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCP-------KVGQKCIISGWGTVTSPQENFPN  137 (225)
T ss_dssp             EECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCC-------CTTCEEEEEESSCSSSSSCCCCS
T ss_pred             eeeeeeeEEEEeeeccCcccchhhhhhhhccccccccccccccccccccc-------cCCceEEEeccceecCCCCCCCC
Confidence            445666777764   45567889999999999999999999999997653       346789999999764  345678


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .|+++.++++++++|++.    +...++++||||+..
T Consensus       138 ~l~~~~~~~~~~~~C~~~----~~~~~~~~~~C~~~~  170 (225)
T d1npma_         138 TLNCAEVKIYSQNKCERA----YPGKITEGMVCAGSS  170 (225)
T ss_dssp             BCEEEEEEECCHHHHHHH----STTTCCTTEEEEECT
T ss_pred             ccEEEEEEEecHHHHhhh----ccCCcCCCEEEecCC
Confidence            899999999999999865    344588999999654

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=99.47  E-value=1.2e-13  Score=115.89  Aligned_cols=104  Identities=18%  Similarity=0.325  Sum_probs=86.9

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      .....+|.++++||+|+.....||||||+|++++.+++.++|+|||.....      ..+..+.++|||.+. .+..+..
T Consensus        64 ~~~~~~v~~~~~h~~y~~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~  137 (222)
T d1eq9a_          64 SGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDED------LESNPCTLTGWGSTRLGGNTPNA  137 (222)
T ss_dssp             CCEEEEEEEEEECTTCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTT------CTTSEEEEEECCCSSTTCCCCSB
T ss_pred             CcceeeeeeEEEeecccccccccceehhhccCCcccccccccccccccccc------cccceeEEeeeeeecCCCCCCcc
Confidence            345678999999999999999999999999999999999999999875432      446789999999875 4567888


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |+...+..++..+|...+     ..+.+.++|++..
T Consensus       138 ~~~~~~~~~~~~~c~~~~-----~~~~~~~~c~~~~  168 (222)
T d1eq9a_         138 LQEIELIVHPQKQCERDQ-----WRVIDSHICTLTK  168 (222)
T ss_dssp             CEEEEEEEECHHHHHHHS-----SSCCTTEEEECCC
T ss_pred             ceEEEEEEechHHhcccc-----ccccCcceEeccC
Confidence            999999999999997542     2357789999764

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-13  Score=116.53  Aligned_cols=105  Identities=28%  Similarity=0.403  Sum_probs=88.4

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ......|.+++.||+|+.....|||||++|+.++.|+++++|+|||.....     ...+..+...|||..........|
T Consensus        65 ~~~~~~v~~i~~~~~~~~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~~-----~~~~~~~~~~g~g~~~~~~~~~~l  139 (224)
T d1t32a1          65 TQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEG-----LRPGTLCTVAGWGRVSMRRGTDTL  139 (224)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCEEEEEESCCSSSSCCCSBC
T ss_pred             ceeeecceeEEEeecccccccccceeEEeeccccccCcccCcccccccccc-----CCCCCEEEEecccccccCCCccee
Confidence            345677999999999999999999999999999999999999999976543     355778899999987655566789


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +++.++++++++|++.    +...+.++++|+..
T Consensus       140 ~~~~~~~~~~~~C~~~----~~~~~~~~~~c~~~  169 (224)
T d1t32a1         140 REVQLRVQRDRQCLRI----FGSYDPRRQICVGD  169 (224)
T ss_dssp             EEEEEEBCCHHHHHHH----STTCCTTTEEEECC
T ss_pred             eeeeeeecCHHHHHhh----cCcccccccceeec
Confidence            9999999999999865    34457788999854

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.4e-14  Score=119.67  Aligned_cols=107  Identities=30%  Similarity=0.477  Sum_probs=84.1

Q ss_pred             EEEeeeEEEEcCCCCCC---CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCcccc
Q psy15989        250 VFTDVKRVHIYPTFNSS---NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEE  326 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~---~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~  326 (363)
                      +...|.++++||+|+..   .+.||||||+|++|+.|+++++|||+|.....     ...+..+.+.|||..+.+ .+..
T Consensus        70 ~~~~v~~i~vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~pi~l~~~~~~-----~~~~~~~~~~g~g~~~~~-~~~~  143 (240)
T d2qy0b1          70 GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTF-----YDLGLMGYVSGFGVMEEK-IAHD  143 (240)
T ss_dssp             CCCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGG-----GCTTCEEEEEECCCCSSS-CCSB
T ss_pred             ceEEEEEEEeccccccccccccCCCceEEecCCccccccccceEEecccccc-----cccCceeeeccccccccc-cccc
Confidence            34578999999999874   35789999999999999999999999875432     245778999999987643 4577


Q ss_pred             ceEEEeceeecccccccCccc-cccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQF-FSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~-~~~~i~~~~iCag~~  362 (363)
                      ++.+.+.+++.+.|+..+... ....+.++++||+..
T Consensus       144 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~~~~  180 (240)
T d2qy0b1         144 LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHP  180 (240)
T ss_dssp             CEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCT
T ss_pred             ceEEEEEEcCHHHHHHHhhccccCCceecceEEeccC
Confidence            899999999999998654321 123467899999653

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-13  Score=117.47  Aligned_cols=111  Identities=23%  Similarity=0.387  Sum_probs=86.8

Q ss_pred             eEEEeeeEEEEcCCCCCCC-CCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSN-YLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~-~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      .....+.++++||+|+..+ ..||||||||++|+.|+++|+|||+|......   ....+......|||.+..+..+..|
T Consensus        65 ~~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~~~~~~~v~pic~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~l  141 (242)
T d1q3xa1          65 YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAES---FMRTDDIGTASGWGLTQRGFLARNL  141 (242)
T ss_dssp             SEEEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGG---GSSTTCEEEEEESSCCTTSSCCSBC
T ss_pred             ccccceeeeEEeeccccccccCccccccccCCCccccccEEEEecccccccc---ccccceeeeeeeccccccCccccce
Confidence            4556788999999998765 58999999999999999999999998654321   1234567788899887766678899


Q ss_pred             eEEEeceeecccccccCcccc--ccCCCCCeEEeccC
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFF--SQFTSDETFCAGFR  362 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~--~~~i~~~~iCag~~  362 (363)
                      +.+.++++++++|++.+....  ...+.+.++|++..
T Consensus       142 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~  178 (242)
T d1q3xa1         142 MYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE  178 (242)
T ss_dssp             EEEEEEEECHHHHHHHTSSTTSCTTCSCTTEEEECCS
T ss_pred             eeeeccccCHHHHHhhhhcccccCceeccceeeeecc
Confidence            999999999999987654322  33567788888653

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.4e-13  Score=115.91  Aligned_cols=106  Identities=25%  Similarity=0.339  Sum_probs=86.6

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ......|.+++.||.|+..+..||||||+|.+++.|+++|+||||+.....     ...+..+.+.|||... ....+..
T Consensus        66 ~~~~~~v~~i~~~~~~~~~~~~~diall~l~~~i~~~~~v~picl~~~~~~-----~~~~~~~~~~g~g~~~~~~~~~~~  140 (227)
T d1fi8a_          66 MQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVK-----VKPGDVCYVAGWGKLGPMGKYSDT  140 (227)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTCC-----CCTTCEEEEEESCBSSTTCCBCSB
T ss_pred             CceEEEEEEEEecccccCccccchhhhhhccCceeeeeeEEEEEecccCcc-----cCCCCEEEEEeeccccCCCCCCce
Confidence            345668999999999999999999999999999999999999999876543     3567889999999875 3356788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |+.+.++++++++|...+.   .......++|++.
T Consensus       141 l~~~~~~~~~~~~c~~~~~---~~~~~~~~~~~~~  172 (227)
T d1fi8a_         141 LQEVELTVQEDQKCESYLK---NYFDKANEICAGD  172 (227)
T ss_dssp             CEEEEEEBCCHHHHHHHTT---TTCCTTTEEEESC
T ss_pred             eeEEEEEEEEchhhhhhhh---cccccceeeeeee
Confidence            9999999999999986532   2235566777754

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-13  Score=115.90  Aligned_cols=107  Identities=30%  Similarity=0.544  Sum_probs=88.0

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.+++.||+|......+|||||+|++++.++++++|||++.....     ......+.+.|||... .....+.
T Consensus        70 ~~~~~~v~~~~~h~~~~~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~~-----~~~~~~~~~~G~~~~~~~~~~~~~  144 (237)
T d1xx9a_          70 DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDR-----NVIYTDCWVTGWGYRKLRDKIQNT  144 (237)
T ss_dssp             TCCCEEEEEEEECTTCSCTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTCT-----TCCCSCEEEEESCCSSTTCCCCSB
T ss_pred             ceEEEEeeEEEEecccccccccceeEEEEeccccccccccceEEecccccc-----cccccccEEEEeecccccccCCCc
Confidence            455678999999999999999999999999999999999999999876543     2445678999999764 4456788


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      |++..++++++++|+..+.   ...+.+.|+|++..
T Consensus       145 ~~~~~~~~~~~~~C~~~~~---~~~~~~~~~c~~~~  177 (237)
T d1xx9a_         145 LQKAKIPLVTNEECQKRYR---GHKITHKMICAGYR  177 (237)
T ss_dssp             CEEEECCEECHHHHHHHTT---TSCCCTTEEEECCT
T ss_pred             cEEEEEEEeCHHHHhhhhc---CCCCCCceEEEecC
Confidence            9999999999999976532   33578899999753

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.45  E-value=1.8e-13  Score=115.11  Aligned_cols=104  Identities=25%  Similarity=0.279  Sum_probs=84.9

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ......|.++++||+|+.....||||||+|++|+.|++.++|+|||.....     ...+..+.+.|||... .+.....
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~  140 (224)
T d3rp2a_          66 TQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDF-----IHPGAMCWAAGWGKTGVRDPTSYT  140 (224)
T ss_dssp             TCEEEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCEEEEEESSEEETTEEECSB
T ss_pred             cceeeeEEEEEecccccccccccceeeeeecceeEeccccceEEecccccc-----cCCCcEEEEeeeeeeecCCCccce
Confidence            445678999999999999999999999999999999999999999876542     3557889999999774 3345667


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ||++.++++++++|...+.     ....+++|++.
T Consensus       141 l~~~~~~~~~~~~C~~~~~-----~~~~~~~~~~~  170 (224)
T d3rp2a_         141 LREVELRIMDEKACVDYRY-----YEYKFQVCVGS  170 (224)
T ss_dssp             CEEEEEEEECGGGTTTTTC-----CCTTTEEEECC
T ss_pred             eeEEEEEccCHHHhhhccc-----ccccceeeecc
Confidence            9999999999999976432     24567888754

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=99.44  E-value=1.7e-13  Score=115.55  Aligned_cols=102  Identities=26%  Similarity=0.476  Sum_probs=84.3

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--CCcccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--DRVSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--~~~~~~  326 (363)
                      .+...+..++.||.|......+||||++|++++.|+++++|||||....       ..+..+.++|||.+..  ...++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~diAl~~l~~~~~~~~~~~picL~~~~~-------~~~~~~~~~gwg~~~~~~~~~~~~  138 (228)
T d1fxya_          66 EAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPP-------ATGTKCLISGWGNTASSGADYPDE  138 (228)
T ss_dssp             EEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEESSCCCSSSCCCCSS
T ss_pred             ceeeeeeccceeeeeeccccccceeehhccccccccccccccccccccc-------ccccEEEEEecccccCCCCCCCch
Confidence            3455677788999999889999999999999999999999999997653       3467899999998743  345678


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |+++.+.+++.++|+..    +...+.+.++|++.
T Consensus       139 l~~~~~~~~~~~~C~~~----~~~~~~~~~~c~~~  169 (228)
T d1fxya_         139 LQCLDAPVLSQAKCEAS----YPGKITSNMFCVGF  169 (228)
T ss_dssp             CEEEEEEBCCHHHHHHH----STTTCCTTEEEESC
T ss_pred             hEEEEEEEeCHHHHhhh----cCCcccceeeEeec
Confidence            99999999999999865    34457788999865

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=1.4e-13  Score=117.80  Aligned_cols=108  Identities=22%  Similarity=0.372  Sum_probs=88.8

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+..+|.++++||.|+.....||||||+|.+|+.|++.++||||+.....     ...+..+.++||+.+. .+.....
T Consensus        82 ~~~~~~v~~i~~h~~y~~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~  156 (251)
T d1pytd_          82 GSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSL-----LPQDYPCFVTGWGRLYTNGPIAAE  156 (251)
T ss_dssp             SCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEECBCCCSSCCSCCCSB
T ss_pred             CceEEeEEEEEEeeeecccccCCceeeeecCCCcccCceeEEEEeeccccC-----CCCceeEEEecCccccCCCcccce
Confidence            456678999999999999999999999999999999999999999876543     3557889999999875 4455677


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ++...++++++++|.+.+.  +.....++++||+..
T Consensus       157 ~~~~~~~~~~~~~C~~~~~--~~~~~~~~~~c~~~~  190 (251)
T d1pytd_         157 LQQGLQPVVDYATCSQRDW--WGTTVKETMVCAGGD  190 (251)
T ss_dssp             CBCCEEECBCHHHHTSTTT--TTTTCCTTEEEECCS
T ss_pred             eceeeccccCHHHHhhhhc--ccccccCceEEeccC
Confidence            8888999999999976532  344578889999753

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.44  E-value=9.7e-13  Score=109.87  Aligned_cols=97  Identities=13%  Similarity=0.186  Sum_probs=56.4

Q ss_pred             CCCCCcceEEE--EEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeee
Q psy15989         27 ARGQWPWHVAL--YRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVK  104 (363)
Q Consensus        27 ~~~~~Pw~v~l--~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~  104 (363)
                      ...++||.+-.  ..... ...++|+|+||+++||||||||+.+....    ...+.+..........    ........
T Consensus        13 d~~~~p~~~v~~i~~~~~-~~~~~cTG~lI~~~~vLTAaHcv~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~   83 (216)
T d2o8la1          13 DTTNGHYAPVTYIQVEAP-TGTFIASGVVVGKDTLLTNKHVVDATHGD----PHALKAFPSAINQDNY----PNGGFTAE   83 (216)
T ss_dssp             STTSGGGTTEEEEEEEET-TEEEEEEEEEEETTEEEECHHHHHTTTTC----GGGEEEEETCCBTTBC----TTCCEEEE
T ss_pred             CCCcCchheEEEEEEEcC-CCCEEEEEEEEeCCEEEEeeeeeccCCCc----eEEEEEEeccccccee----eeeeEEee
Confidence            35678887533  33332 33789999999999999999999864321    2234444444332211    11122222


Q ss_pred             EEEECCCCCCCCCCCCeEEEEeCCcccCCCCccc
Q psy15989        105 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRP  138 (363)
Q Consensus       105 ~i~~hp~y~~~~~~nDIALl~L~~~~~~~~~v~p  138 (363)
                      .....      ...+|+|||+|+.+........+
T Consensus        84 ~~~~~------~~~~D~all~l~~~~~~~~~~~~  111 (216)
T d2o8la1          84 QITKY------SGEGDLAIVKFSPNEQNKHIGEV  111 (216)
T ss_dssp             EEEEC------SSSSCCEEEEECCCTTSCCTTTS
T ss_pred             eeecc------ccCCceEEEEecccccccccccc
Confidence            22221      23569999999987765544333

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.2e-14  Score=118.15  Aligned_cols=91  Identities=27%  Similarity=0.411  Sum_probs=78.4

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .+...|.+++.||.|+..+..||||||+|++|+.|+++|+|+|||.....     ...+..+.++|||.+. .+.....|
T Consensus        66 ~~~~~v~~i~~~~~~~~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~~-----~~~~~~~~~~G~~~~~~~~~~~~~l  140 (227)
T d1fq3a_          66 QQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQ-----VKPGQTCSVAGWGQTAPLGKHSHTL  140 (227)
T ss_dssp             CEEEEEEEECCCTTCCTTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSCC-----CCTTCEEECCCSCCSTTTSCCCSBC
T ss_pred             cEEEEEEEEEecccCCCCCCCcchhhhhcccccccceeEEEEeecccccc-----cCCCCEEEEEeeccccCcccccccc
Confidence            45678999999999999999999999999999999999999999875543     3567889999999874 44557789


Q ss_pred             eEEEeceeecccccccC
Q psy15989        328 KMAIMPIVSHQQCLWSN  344 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~  344 (363)
                      +++++.++++++|++.+
T Consensus       141 ~~~~~~~~~~~~C~~~~  157 (227)
T d1fq3a_         141 QEVKMTVQEDRKCESDL  157 (227)
T ss_dssp             CBCEEECCCHHHHTTTC
T ss_pred             eEEEEEEEcHHHhhhhh
Confidence            99999999999998654

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=2.4e-13  Score=114.10  Aligned_cols=104  Identities=23%  Similarity=0.385  Sum_probs=86.7

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC--CCCccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE--NDRVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~--~~~~~~  325 (363)
                      ......+..+++||.|+.....||||||+|++++.+++.++|+||+....       ..+..+.++|||.+.  ....+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~cl~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~  133 (223)
T d1hj9a_          61 NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-------SAGTQCLISGWGNTKSSGTSYPD  133 (223)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-------CTTCEEEEEESSCCCSSSCCCCS
T ss_pred             eeeeeceeeEEeccccccccccchhhhhhcccceeeeeeeeccccccccc-------cccceEEEEeeccccCCCCCCCc
Confidence            34567788999999999999999999999999999999999999987653       346678999999764  334578


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .|+...++++++++|++.    +...+.++++|++..
T Consensus       134 ~l~~~~~~~~~~~~C~~~----~~~~~~~~~~c~~~~  166 (223)
T d1hj9a_         134 VLKCLKAPILSDSSCKSA----YPGQITSNMFCAYGL  166 (223)
T ss_dssp             SCEEEEEECCCHHHHHHH----STTTCCTTEEECCCC
T ss_pred             cceEEEEeecCHHHHHHH----hCCcccccceEEeec
Confidence            899999999999999865    344578889998753

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=3.6e-13  Score=113.11  Aligned_cols=91  Identities=24%  Similarity=0.344  Sum_probs=78.3

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ..+...|.++++||+|+.....||||||||++|+.|++.++|+|++.....     .+.+..++++|||.+. .......
T Consensus        65 ~~~~~~V~~i~~hp~~~~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~~-----~~~~~~~~~~g~g~~~~~~~~~~~  139 (224)
T d1eufa_          65 TQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAE-----VKPGMMCSVAGWGRLGVNMPSTDK  139 (224)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCC-----CCTTCEEEEEESCBSSTTCCBCSB
T ss_pred             CcEEEEEEEEEECCccccccccccceeeeccceeEEeeeEeeeeeeccccc-----ccCCceEEEecccceecccccccc
Confidence            346678999999999999999999999999999999999999999876543     3567889999999875 4455678


Q ss_pred             ceEEEeceeeccccccc
Q psy15989        327 LKMAIMPIVSHQQCLWS  343 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~  343 (363)
                      ++...++++++++|+..
T Consensus       140 ~~~~~~~~~~~~~C~~~  156 (224)
T d1eufa_         140 LQEVDLEVQSEEKCIAR  156 (224)
T ss_dssp             CEEEEEEBCCTHHHHTT
T ss_pred             ceeeeeccCCHHHHHHH
Confidence            89999999999999765

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6e-13  Score=112.93  Aligned_cols=109  Identities=19%  Similarity=0.310  Sum_probs=87.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC--CCCccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE--NDRVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~--~~~~~~  325 (363)
                      ......+..++.||.|+.....+|||||+|+.++.|+++++|||||.....      .....+.+.|||.++  .+..+.
T Consensus        69 ~~~~~~~~~i~~h~~~~~~~~~~diAll~l~~~~~~~~~~~picL~~~~~~------~~~~~~~~~g~g~~~~~~~~~~~  142 (240)
T d1mzaa_          69 SKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSL------RSGTKCKVTGWGATDPDSLRPSD  142 (240)
T ss_dssp             TCEEEEEEEEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCC------CTTCEEEEEECCCSSTTCSSCCS
T ss_pred             cceeEeeeeeeeeccccccccCcceEEEeecceeeeeeccccccccccccc------cceeeEEEEEeccccCCcCcCCc
Confidence            345567889999999999999999999999999999999999999876543      345678899999874  344567


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .|+.+.+.+++.++|+............+.++|++..
T Consensus       143 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~c~~~~  179 (240)
T d1mzaa_         143 TLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDA  179 (240)
T ss_dssp             BCEEEEEEECCHHHHTSTTTTTTTTCCCTTEEEEECT
T ss_pred             ccEEEEEEEecHHHhhhhhhccCCcccccceEEeccC
Confidence            8999999999999998653222233467889999754

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.41  E-value=6.4e-13  Score=108.17  Aligned_cols=161  Identities=22%  Similarity=0.223  Sum_probs=84.6

Q ss_pred             eEEEE-EEEe---eCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCe
Q psy15989         46 SYVCG-GSLV---SVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDI  121 (363)
Q Consensus        46 ~~~Cg-GsLI---s~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDI  121 (363)
                      .+.|+ |.++   +.+||||||||+...        ..+  ..     .     ...+.+.+.....||++       |+
T Consensus        11 ~~~Ct~Gf~v~~~g~~~ilTAaHCv~~~--------~~~--~~-----~-----~~~~~~~~~~~~~~~~~-------D~   63 (187)
T d1hpga_          11 GSRCSAAFNVTKGGARYFVTAGHCTNIS--------ANW--SA-----S-----SGGSVVGVREGTSFPTN-------DY   63 (187)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC--------SEE--ES-----S-----TTCCEEEEEEEEECSBS-------CE
T ss_pred             CCeEeeeEEEEcCCCcEEEEchhcCCCC--------Cee--EE-----C-----CCCEEEEEEEeecccCC-------ch
Confidence            46687 7777   457999999998642        221  11     1     33456777778888764       99


Q ss_pred             EEEEeCCcccCCCCccceEecCCCCCCceeeeeeceeeecCCCCccceEEecCeeEEeeee---EEEEeecCeeeccccc
Q psy15989        122 ALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGTSVCNGDSGGGMVFKIDSAWYLRGIV---SITVARDGLRVCDTKH  198 (363)
Q Consensus       122 ALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~~~c~g~~G~~~~~~~~~~~~~~~l~---~~~~~~~~~~~C~~~~  198 (363)
                      |+++++.+......+.+.   ....       ......-.-..+++...............   ..... .+...|    
T Consensus        64 a~~~~~~~~~~~~~~~~~---~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----  128 (187)
T d1hpga_          64 GIVRYTDGSSPAGTVDLY---NGST-------QDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVN-YGDGPV----  128 (187)
T ss_dssp             EEEEECSSCCCCSEEECS---SSCE-------EECCEECCCCTTCEEEEEETTTEEEEEEEEEEEEEEE-ETTEEE----
T ss_pred             hheecccCcccceeEecC---CCcc-------cccccceeeeccccccccccceeeeeeeeeeccccEE-cCCccE----
Confidence            999999877655443221   1111       00011111012222111111110000000   00000 011111    


Q ss_pred             eEEecCCCccCcccccceeEEEEcCccEEEEEEEEEEecCcceecCCCcceEEEeeeEE
Q psy15989        199 YVVFTDVANVCNGDSGGGMVFKIDSAWYLRGIVSITVARDGLRVCDTKHYVVFTDVKRV  257 (363)
Q Consensus       199 ~~~~~~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~~~~g~~~c~~~~~~v~~~V~~i  257 (363)
                      ..........|.|||||||+...    .++||+|++     ..+|....+..|++|..+
T Consensus       129 ~~~~~~~~~~~~GDSGgPl~~~~----~~vGi~s~g-----~~~~~~~~~~~~~pv~~~  178 (187)
T d1hpga_         129 YNMVRTTACSAGGDSGGAHFAGS----VALGIHSGS-----SGCSGTAGSAIHQPVTEA  178 (187)
T ss_dssp             EEEEEECCCCCTTCTTCEEEETT----EEEEEEEEE-----SCCBTTBCCCEEEEHHHH
T ss_pred             eccEEcCcccccCCCCCeEEECC----EEEEEEEEE-----ecCCCCCCCEEEEEHHHH
Confidence            12233456789999999999743    799999984     345555556677776543

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.38  E-value=4.7e-13  Score=113.00  Aligned_cols=107  Identities=21%  Similarity=0.290  Sum_probs=86.1

Q ss_pred             eEEEeeeEEEEcCCCCCCCC--CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSE  325 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~--~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~  325 (363)
                      .+...|.++++||+|+....  ++|||||+|++|+.|++.++|||||.....     ...+..+.+.||+.+. .+..+.
T Consensus        61 ~~~~~v~~i~~hp~~~~~~~~~~~diAll~l~~~~~~~~~~~pic~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~  135 (232)
T d1fona_          61 VIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDI-----LPNEAPCYISGWGRLYTGGPLPD  135 (232)
T ss_dssp             EEEECTTSEEECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCC-----CCTTCCCEEEECTTCCCSSSCCS
T ss_pred             cccceeEEEEEccCccccccccccceeeeecccceEEeecceeeecCccccc-----CCCCceeEeeccccccCCCCCCC
Confidence            34557889999999987654  499999999999999999999999876543     3456788999999875 445678


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .|+.+.+++++.+.|.+...  ....+.+.++|++..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~c~~~~  170 (232)
T d1fona_         136 KLQQALLPTVDYEHCSQWDW--WGITVKKTMVCAGGD  170 (232)
T ss_dssp             BCEEEECCEECHHHHTSTTT--TGGGCCTTEEEECCS
T ss_pred             cceEEEEEEEcHHHhhhhhc--cCceeeeceeeeccc
Confidence            99999999999999976532  344578889998653

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.6e-12  Score=111.37  Aligned_cols=109  Identities=31%  Similarity=0.472  Sum_probs=86.4

Q ss_pred             cceEEEeeeEEEEcCC------CCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-
Q psy15989        247 HYVVFTDVKRVHIYPT------FNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-  319 (363)
Q Consensus       247 ~~~v~~~V~~ii~h~~------y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-  319 (363)
                      .......+.+++.||.      |+.....||||||||++++.|+++++|+||+.....     ...+..+.+.||+.+. 
T Consensus        65 ~~~~~~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~~-----~~~~~~~~~~G~~~~~~  139 (255)
T d1z8ga1          65 PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQA-----LVDGKICTVTGWGNTQY  139 (255)
T ss_dssp             TTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESSBSST
T ss_pred             CccEEEEEEEEEEEeeeccccccccCCccccEEEEecCCccccCcccccceecccCcc-----cCCCcEEEeeccccccC
Confidence            3456677889999988      566677899999999999999999999999865543     2557889999999775 


Q ss_pred             CCCccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        320 NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       320 ~~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .+..+..|+.+.+++++++.|+..+.  ....+.+.|+|++..
T Consensus       140 ~~~~~~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~~~~~~~  180 (255)
T d1z8ga1         140 YGQQAGVLQEARVPIISNDVCNGADF--YGNQIKPKMFCAGYP  180 (255)
T ss_dssp             TSCBCSBCEEEEEEEECHHHHTSTTT--TTTCCCTTEEEESCT
T ss_pred             CCcccceeEEEEEEEeCHHHhhhhhc--cCccccCcceEEecC
Confidence            45567889999999999999976532  234567788887653

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.4e-13  Score=112.01  Aligned_cols=98  Identities=20%  Similarity=0.318  Sum_probs=71.8

Q ss_pred             EeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccceEEE
Q psy15989        252 TDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAI  331 (363)
Q Consensus       252 ~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~  331 (363)
                      ..+..+..||+      .||||||||++|+.|+++|+|||||.....     ...+..+.+.|||.......+..|++++
T Consensus        71 ~~~~~~~~~~~------~~DIAll~L~~~v~~~~~v~picl~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~l~~~~  139 (234)
T d1si5h_          71 LNVSQLVYGPE------GSDLVLMKLARPAVLDDFVSTIDLPNYGST-----IPEKTSCSVYGWGYTGLINYDGLLRVAH  139 (234)
T ss_dssp             EEEEEEEECSS------TTCEEEEEESSCCCCSSSCCCCBCCCTTCC-----CCTTCEEEEEESSCCCCSSCCCBCEEEE
T ss_pred             EeeccccCCCc------ccceEEEeeccCcccccccccccccccccc-----CCcceeEEEecccccccccccceeEEEE
Confidence            34445555554      479999999999999999999999976543     3456677888888765555677899999


Q ss_pred             eceeecccccccCccccccCCCCCeEEeccC
Q psy15989        332 MPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       332 v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      +++++.+.|...+.  ....+.++++|++.+
T Consensus       140 ~~~~~~~~~~~~~~--~~~~~~~~~~C~~~~  168 (234)
T d1si5h_         140 LYIMGNEKCSQHHR--GKVTLNESEICAGAE  168 (234)
T ss_dssp             EEEECGGGTCC---------CCTTEEEEECS
T ss_pred             eeccchhHhhhhhc--cccccCCccEEEccC
Confidence            99999999976532  233578899999754

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=99.34  E-value=1.7e-12  Score=109.93  Aligned_cols=110  Identities=16%  Similarity=0.329  Sum_probs=85.7

Q ss_pred             cceEEEeeeEEEEcCCCCCC--CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCc
Q psy15989        247 HYVVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRV  323 (363)
Q Consensus       247 ~~~v~~~V~~ii~h~~y~~~--~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~  323 (363)
                      ...+.++|.++++||.|+..  .+.||||||+|++++.|++.++|||+|.....     ...+..+.+.|||.+. .+..
T Consensus        67 ~~~~~~~v~~~~~h~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~  141 (241)
T d1m9ua_          67 SGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNN-----DYAGTTCVISGWGRTDGTNNL  141 (241)
T ss_dssp             TTCEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSC-----CCTTCEEEEEESSCSSSSSCC
T ss_pred             cccccccceeeeeeeeeccccccccccceeeeccceeeeeeceeeeeeeccccc-----cccceEEEEeecccccCCCCC
Confidence            34567889999999999875  35789999999999999999999999865432     3567889999999875 4456


Q ss_pred             cccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        324 SEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       324 ~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +..|+.+.++++++++|++.+.........+.++|++.
T Consensus       142 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~  179 (241)
T d1m9ua_         142 PDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQD  179 (241)
T ss_dssp             CSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEEECC
T ss_pred             CCcceEEEEEeechhHhhhhhhcccccccccceeEeec
Confidence            78899999999999999865433223334556666543

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=99.34  E-value=9.8e-13  Score=110.58  Aligned_cols=89  Identities=24%  Similarity=0.287  Sum_probs=76.4

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--CCccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--DRVSE  325 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--~~~~~  325 (363)
                      ..+...|.++++||+|+.....||||||+|++++.|++.++||||+....       ..+..+.++|||.+..  .....
T Consensus        64 ~~~~~~v~~i~~~~~y~~~~~~~diAll~l~~~~~~~~~~~pi~l~~~~~-------~~~~~~~~~g~g~~~~~~~~~~~  136 (226)
T d1azza_          64 TQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV-------GVGTVVTPTGWGLPSDSALGISD  136 (226)
T ss_dssp             TCEEEEECCEEECTTCBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCC-------CTTCEEEEEESSCSSTTCSSSCS
T ss_pred             ceEEEEeeeeeeccccccccccchhhhhhcCCccceeecccccccccccc-------ccccceeeecccccCCCcCcccc
Confidence            45667899999999999999999999999999999999999999987654       3467789999998753  23467


Q ss_pred             cceEEEeceeeccccccc
Q psy15989        326 ELKMAIMPIVSHQQCLWS  343 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~  343 (363)
                      .|++..+++++.++|+..
T Consensus       137 ~l~~~~~~~~~~~~C~~~  154 (226)
T d1azza_         137 VLRQVDVPIMSNADCDAV  154 (226)
T ss_dssp             BCEECCEEEECHHHHHHH
T ss_pred             EeEEEEEEEEeHHHhhhh
Confidence            899999999999999765

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.7e-13  Score=119.73  Aligned_cols=111  Identities=17%  Similarity=0.186  Sum_probs=70.5

Q ss_pred             EeeeEEEEcCCCCC---------CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--
Q psy15989        252 TDVKRVHIYPTFNS---------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--  320 (363)
Q Consensus       252 ~~V~~ii~h~~y~~---------~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--  320 (363)
                      .+|+++++||+|+.         ..+.||||||||++|++|+++|+|||||................+...+|+....  
T Consensus        71 ~~v~~i~~Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (287)
T d1rrka1          71 LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQD  150 (287)
T ss_dssp             EEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSE
T ss_pred             eeeEEEEecCCccccccccccCCCcccccEEEEecccCccccceEEEEecCCccccccccccCCcceEeecCceeecCCC
Confidence            57889999999974         3456999999999999999999999999653221111111222223333433211  


Q ss_pred             ------CCccccceEEEeceeeccccc---ccC--------ccccccCCCCCeEEeccC
Q psy15989        321 ------DRVSEELKMAIMPIVSHQQCL---WSN--------PQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       321 ------~~~~~~L~~~~v~ii~~~~C~---~~~--------~~~~~~~i~~~~iCag~~  362 (363)
                            ...+..|++..+++++...|.   ...        ...+...++++|||||+.
T Consensus       151 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~  209 (287)
T d1rrka1         151 IKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGV  209 (287)
T ss_dssp             EEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESS
T ss_pred             ccccccccCCceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEeccc
Confidence                  123567888888888776542   110        011234578999999753

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.9e-12  Score=110.04  Aligned_cols=108  Identities=30%  Similarity=0.353  Sum_probs=84.1

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC---Cccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND---RVSE  325 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~---~~~~  325 (363)
                      .+..+|.++++||+|+.....||||||+|.+|+.|+++++|+|||.....     ...+..+.+.+||.+..+   ..+.
T Consensus        69 ~~~~~i~~i~~hp~~~~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~  143 (243)
T d2fpza1          69 DQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASET-----FPPGMPCWVTGWGDVDNDERLPPPF  143 (243)
T ss_dssp             CCCEEEEEEEECTTCSCTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTCC-----CCTTCEEEEEESSCSBTTBCCCTTC
T ss_pred             cEEEeeeeeeccccccccccccchhhhcccCccccceeEEEeecCchhhc-----cCCCceeEEEecccccCCCcCCCCc
Confidence            45578999999999999999999999999999999999999999865543     345778999999987533   3467


Q ss_pred             cceEEEeceeecccccccCcccc-----ccCCCCCeEEecc
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFF-----SQFTSDETFCAGF  361 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~-----~~~i~~~~iCag~  361 (363)
                      .|+++.++++++++|+..+....     ...+...++|++.
T Consensus       144 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (243)
T d2fpza1         144 PLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGN  184 (243)
T ss_dssp             BCEEEEEEEECHHHHHHHHHTTBCSCTTSCSSCTTEEEECC
T ss_pred             EeEEEEEeecCHHHhhhhhhcccccCCccceeeeeeEecCC
Confidence            89999999999999975532111     1134556777653

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=99.33  E-value=2.3e-12  Score=107.97  Aligned_cols=103  Identities=24%  Similarity=0.436  Sum_probs=81.1

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC--Ccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND--RVSEE  326 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~~  326 (363)
                      .+...+..++.||.|..  ..+|||||+|++|+.|++.++|+|++.....     ...+..+.++|||.+..+  ..+..
T Consensus        64 ~~~~~~~~i~~h~~~~~--~~~DiAll~L~~~v~~~~~~~~i~~~~~~~~-----~~~~~~~~~~g~g~~~~~~~~~~~~  136 (224)
T d1gdna_          64 GITSSLSSVRVHPSYSG--NNNDLAILKLSTSIPSGGNIGYARLAASGSD-----PVAGSSATVAGWGATSEGGSSTPVN  136 (224)
T ss_dssp             SEEEEEEEEEECTTCBT--TBSCCEEEEESSCCCCBTTBCCCCBCCTTCC-----CCTTCEEEEEESCCSSTTCSCCCSB
T ss_pred             cceEEEEEEEeeecccc--ccceeEEEeeccccccccccceeeccccccc-----cccceeeeeeccCccccCCCcCCCE
Confidence            45566778889998864  4799999999999999999999999865542     356788999999987533  35678


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |++..++++++++|+..+.   ...+.+.++|++.
T Consensus       137 l~~~~v~~i~~~~C~~~~~---~~~~~~~~~~~~~  168 (224)
T d1gdna_         137 LLKVTVPIVSRATCRAQYG---TSAITNQMFCAGV  168 (224)
T ss_dssp             CEEEEEEEECHHHHHHHHC---TTTSCTTEEEECC
T ss_pred             eeeeEEEEeCHHHHhcccc---cCccccceeeeec
Confidence            9999999999999986532   2346677787754

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.9e-12  Score=106.61  Aligned_cols=91  Identities=24%  Similarity=0.331  Sum_probs=78.2

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      .....+|.+++.||.|+.....||||||+|++|+.++++++|+|||.....     ...+..+.+.|||.+. .+..+..
T Consensus        66 ~~~~~~v~~i~~~~~y~~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~  140 (228)
T d1bioa_          66 SKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRD-----VAPGTLCDVAGWGIVNHAGRRPDS  140 (228)
T ss_dssp             TCEEEEEEEEEECTTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCC-----CCTTCEEEEEESSCCSTTCCCCSB
T ss_pred             ceeeccceeeeeeecccCCCcccceehhhccccceeeeEEeeecccccccc-----cccCceEEEecceeecCCCCCCCc
Confidence            455678999999999999999999999999999999999999999975543     3557788999999874 4556788


Q ss_pred             ceEEEeceeeccccccc
Q psy15989        327 LKMAIMPIVSHQQCLWS  343 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~  343 (363)
                      |+...+++++.++|...
T Consensus       141 l~~~~~~~~~~~~~~~~  157 (228)
T d1bioa_         141 LQHVLLPVLDRATCNRR  157 (228)
T ss_dssp             CEEEEEEEECHHHHHST
T ss_pred             ceEEEEEEeCHHHHhhh
Confidence            99999999999999754

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-11  Score=103.42  Aligned_cols=91  Identities=22%  Similarity=0.266  Sum_probs=77.7

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ......+.+++.||.|+..+..+|||||+|..|+.|+..++|+|++.....     ...+..+...||+.+. .+..+..
T Consensus        64 ~~~~~~~~~~~~~p~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~  138 (224)
T d1nn6a_          64 TWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF-----VPPGRMCRVAGWGRTGVLKPGSDT  138 (224)
T ss_dssp             TCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCCC-----CCTTCEEEEEECCCCSSSCCCCSB
T ss_pred             cccceeEEEEEEeecccccccccchhhhcccCCcccccccccccccccccc-----cCCCceeeeccccccccCCCcccc
Confidence            446678889999999999999999999999999999999999999875543     2457789999999774 4456788


Q ss_pred             ceEEEeceeeccccccc
Q psy15989        327 LKMAIMPIVSHQQCLWS  343 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~  343 (363)
                      |+.+.+.++++++|++.
T Consensus       139 ~~~~~~~~~~~~~C~~~  155 (224)
T d1nn6a_         139 LQEVKLRLMDPQACSHF  155 (224)
T ss_dssp             CEEEEEEBCCGGGGTTS
T ss_pred             ceEEEEEecCHHHHhhh
Confidence            99999999999999754

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.5e-13  Score=112.25  Aligned_cols=97  Identities=21%  Similarity=0.369  Sum_probs=64.3

Q ss_pred             eEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC--CCCccccceEEEe
Q psy15989        255 KRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE--NDRVSEELKMAIM  332 (363)
Q Consensus       255 ~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~--~~~~~~~L~~~~v  332 (363)
                      ..+..|+.|+.....+|||||+|++|+.|+++++|||||....       .....+++.|||.+.  .+..+..|++..+
T Consensus        71 ~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~v~pi~l~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~  143 (228)
T d1sgfa_          71 SLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEP-------KLGSTCLASGWGSTTPIKFKYPDDLQCVNL  143 (228)
T ss_dssp             GGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCC-------CTTCEEEEC-------C---------CEEE
T ss_pred             eeecccCCCCccccccceeEEeeccccccCCceeeEecCcccc-------ccCcceEEEeeeeccCCccCCCCccEEEEE
Confidence            3456899999999999999999999999999999999997654       345678999999874  3356788999999


Q ss_pred             ceeecccccccCccccccCCCCCeEEeccC
Q psy15989        333 PIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       333 ~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .++++++|++.+    .....+.++|++..
T Consensus       144 ~~~~~~~C~~~~----~~~~~~~~~~~~~~  169 (228)
T d1sgfa_         144 KLLPNEDCDKAH----EMKVTDAMLCAGEM  169 (228)
T ss_dssp             EEECTHHHHTTC----SSBCCTTEEEEEEC
T ss_pred             EEeCHHHhhhhc----cCCcccceEEeccC
Confidence            999999997643    33456778888643

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.28  E-value=3.3e-12  Score=107.81  Aligned_cols=94  Identities=22%  Similarity=0.314  Sum_probs=70.5

Q ss_pred             EEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC--CCccccceEEEecee
Q psy15989        258 HIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN--DRVSEELKMAIMPIV  335 (363)
Q Consensus       258 i~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~--~~~~~~L~~~~v~ii  335 (363)
                      ..|+.+......||||||+|++|++|++.++|+||+....       .....+.++|||.+..  ...+..|+++.++++
T Consensus        81 ~~~~~~~~~~~~~Diall~L~~~v~~~~~i~~i~l~~~~~-------~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~  153 (235)
T d1tona_          81 TNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEP-------KVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLL  153 (235)
T ss_dssp             ------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCC-------CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEE
T ss_pred             eecccccccccccceeEEEecCccccCCcccccccccccc-------cccceeEEEEccccccccccccccceeeeeeee
Confidence            3344444456689999999999999999999999986553       3456788999998743  344568999999999


Q ss_pred             ecccccccCccccccCCCCCeEEeccC
Q psy15989        336 SHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       336 ~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ++++|+..    +.....+.++|++..
T Consensus       154 ~~~~C~~~----~~~~~~~~~~c~~~~  176 (235)
T d1tona_         154 SNEKCIET----YKDNVTDVMLCAGEM  176 (235)
T ss_dssp             CGGGCGGG----GSTTGGGGEEEEECT
T ss_pred             CHHHHHHH----hCCCCCCCceEeCcC
Confidence            99999865    344567889998753

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.2e-12  Score=108.28  Aligned_cols=110  Identities=26%  Similarity=0.436  Sum_probs=82.6

Q ss_pred             EEEeeeEEEEcCCCCC-------CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCC
Q psy15989        250 VFTDVKRVHIYPTFNS-------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDR  322 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~-------~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~  322 (363)
                      ....|.++++||+|..       .++.||||||||.+|+.|++.|+|+|++.....   .....+..+.+.|||.+....
T Consensus        77 ~~~~v~~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~---~~~~~~~~~~~~g~~~~~~~~  153 (259)
T d1elva1          77 KMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSD---YNLMDGDLGLISGWGRTEKRD  153 (259)
T ss_dssp             CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGG---GCCCTTCEEEEEESCCCSSCS
T ss_pred             ccccceeEeecceeecccccccCCCcccceeeeecccceehhcccCceeeccCccc---cccccceEEEEeccccccccc
Confidence            4467899999999953       456799999999999999999999999865432   123567789999999886555


Q ss_pred             ccccceEEEeceeecccccccCccc-----cccCCCCCeEEeccC
Q psy15989        323 VSEELKMAIMPIVSHQQCLWSNPQF-----FSQFTSDETFCAGFR  362 (363)
Q Consensus       323 ~~~~L~~~~v~ii~~~~C~~~~~~~-----~~~~i~~~~iCag~~  362 (363)
                      ....|+++.+++++...|...+...     ....+.+.++|++..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (259)
T d1elva1         154 RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGE  198 (259)
T ss_dssp             SCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECS
T ss_pred             cccccccceeeEechhhceeeeecccccccccceeecceeeccCC
Confidence            5677999999999999996543211     122367788888653

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=99.25  E-value=1e-11  Score=104.68  Aligned_cols=85  Identities=18%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             eeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC--CCCccccceEE
Q psy15989        253 DVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE--NDRVSEELKMA  330 (363)
Q Consensus       253 ~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~--~~~~~~~L~~~  330 (363)
                      .+...+.|+.|+.....||||||||++|+.|+++|+|+|||....       ..+..+.++|||...  .......|+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~DiaLl~L~~~v~~~~~i~picl~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~  140 (234)
T d1op0a_          68 PKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSPP-------SVGSVCRIMGWGSITPVKETFPDVPYCA  140 (234)
T ss_dssp             EEEEEECTTCCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEESSCSSSSSCCCCSSCEEE
T ss_pred             eeeeccccccccccccchhhhhhhcCCceeccceeecccccccCc-------ccceEEEEeeeccccccccccccccccc
Confidence            345677889999999999999999999999999999999997543       347889999999764  23456779999


Q ss_pred             EeceeecccccccC
Q psy15989        331 IMPIVSHQQCLWSN  344 (363)
Q Consensus       331 ~v~ii~~~~C~~~~  344 (363)
                      .+.++++++|...+
T Consensus       141 ~~~~~~~~~C~~~~  154 (234)
T d1op0a_         141 NINLLDHAVCQAGY  154 (234)
T ss_dssp             EEEEECHHHHHHHC
T ss_pred             cceEechHHhcccc
Confidence            99999999997653

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=7.3e-12  Score=105.82  Aligned_cols=104  Identities=24%  Similarity=0.396  Sum_probs=82.0

Q ss_pred             ceEEEeeeEEEEcCCCCCC-----------CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEec
Q psy15989        248 YVVFTDVKRVHIYPTFNSS-----------NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWG  316 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~-----------~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG  316 (363)
                      ..+...+.+.+.||.|+..           .+.+|||||||+++++|++.++|+|||....       ..+..++++|||
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp~~~~-------~~~~~~~~~g~~  134 (237)
T d1ao5a_          62 SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEP-------KPGSKCLASGWG  134 (237)
T ss_dssp             SCEECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCC-------CTTCEEEEEESC
T ss_pred             ccEEEEEEEEeecccccccccccccccCccccccceeeeccCcccccccccceeccCCCCC-------cccceEEEeeee
Confidence            3456678888889888642           3468999999999999999999999997653       346789999999


Q ss_pred             CCCC--CCccccceEEEeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        317 YDEN--DRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       317 ~~~~--~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      ....  ...+..|+...+..++.+.|...    +...+.++++|++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~----~~~~~~~~~~~~~~~  178 (237)
T d1ao5a_         135 SITPTRWQKPDDLQCVFITLLPNENCAKV----YLQKVTDVMLCAGEM  178 (237)
T ss_dssp             CSSCC-CCCCSBCEEEEEEEECHHHHHHH----CSSCCCTTEEEEECT
T ss_pred             eeccccccCCccceeeEEEEEehHHhhhh----hcCCCCCCeEEEccC
Confidence            7642  34567899999999999999764    344577889998653

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=2.4e-11  Score=102.65  Aligned_cols=107  Identities=22%  Similarity=0.286  Sum_probs=84.4

Q ss_pred             ceEEEeeeEEEEcCCCCCCCC--CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC-CCcc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN-DRVS  324 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~--~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~-~~~~  324 (363)
                      ..+...|..+++|++|+....  ++|||||+|+.++.++..++|||++.....     .+.+..+.+.|||.... ...+
T Consensus        68 ~~~~~~v~~~~~~~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~~-----~~~~~~~~~~g~g~~~~~~~~~  142 (241)
T d1brup_          68 GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTI-----LPNNYVCYVTGWGRLQTNGASP  142 (241)
T ss_dssp             TCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESCCSSTTSCCC
T ss_pred             CccccceeeeEEEeeeeeccccCCceEEEEecccccccccceeeeeecccccc-----CCCceeEEEEeeeccCCCCcCC
Confidence            345677899999999977654  467999999999999999999999876543     35678899999998753 3456


Q ss_pred             ccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        325 EELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       325 ~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +.|+++.++++++++|++...  +...+..+++|++.
T Consensus       143 ~~~~~~~~~~~~~~~C~~~~~--~~~~~~~~~~~~~~  177 (241)
T d1brup_         143 DILQQGQLLVVDYATCSKPGW--WGSTVKTNMICAGG  177 (241)
T ss_dssp             SBCEEEEEEEECHHHHTSTTT--TGGGCCTTEEEECC
T ss_pred             CcceEEEEEEeCHHHhCcccc--ccccccccceeecC
Confidence            789999999999999986532  23456777888764

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.5e-12  Score=105.53  Aligned_cols=95  Identities=29%  Similarity=0.518  Sum_probs=75.3

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC------
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND------  321 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~------  321 (363)
                      ..+...|.++++||.|+..+..||||||||++|+.|+++|+|||||...... ......+..+.++|||.+...      
T Consensus        65 ~~~~~~v~~i~~~~~~~~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~-~~~~~~~~~~~~~g~g~~~~~~~~~~~  143 (240)
T d1autc_          65 WELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAE-RELNQAGQETLVTGWGYHSSREKEAKR  143 (240)
T ss_dssp             TCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHH-HTTTSTTCEEEEEECCCCCSCCSCCCS
T ss_pred             cceeeeeeccccceeeeccccccceeEEEeCCcccCCcccccceeccCcccc-cccccCCCeEEEEeeccccCCCccccc
Confidence            4567789999999999999999999999999999999999999998643211 011245778999999976321      


Q ss_pred             CccccceEEEeceeeccccccc
Q psy15989        322 RVSEELKMAIMPIVSHQQCLWS  343 (363)
Q Consensus       322 ~~~~~L~~~~v~ii~~~~C~~~  343 (363)
                      ..+..++...+++++++.|...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~  165 (240)
T d1autc_         144 NRTFVLNFIKIPVVPHNECSEV  165 (240)
T ss_dssp             SCSSBCEEEEEEEECHHHHHHH
T ss_pred             ccceeeecceeeEEeehhhhhh
Confidence            2356788899999999999754

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.2e-12  Score=105.02  Aligned_cols=107  Identities=31%  Similarity=0.513  Sum_probs=83.0

Q ss_pred             eEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccc
Q psy15989        249 VVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEEL  327 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L  327 (363)
                      .....+..+++||+|+.....+|||||+|++|+.|+++++|+|||.....  .........+++.|||... .+.....+
T Consensus        66 ~~~~~~~~i~~h~~~~~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (233)
T d2p3ub1          66 EAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWA--ESTLMTQKTGIVSGFGRTHEKGRQSTRL  143 (233)
T ss_dssp             CEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHH--HHHTTTSSEEEEEESCBSSTTSCBCSBC
T ss_pred             ceeecceeEEEeecccccccccceeeeecccceeecccccccccCCcccc--cccccccceEEEecCCccccCCCccccc
Confidence            34567888999999999999999999999999999999999999865321  1122445678899999764 44456678


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      ++..+++++++.|...+    ...+..+++|+..
T Consensus       144 ~~~~~~~~~~~~C~~~~----~~~~~~~~~~~~~  173 (233)
T d2p3ub1         144 KMLEVPYVDRNSCKLSS----SFIITQNMFCAGY  173 (233)
T ss_dssp             EEEEEEBCCHHHHHHHC----SSCCCTTEEEESC
T ss_pred             cccccccccchhhhccc----CceEeecceeeec
Confidence            99999999999997653    3345677888754

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.2e-11  Score=101.93  Aligned_cols=89  Identities=20%  Similarity=0.250  Sum_probs=74.6

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccce
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEELK  328 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L~  328 (363)
                      ....+..++.|+.|+.....||||||||++|+.|+++++|+||+.....     ...+..+.++|||.+. .......|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~l~  142 (225)
T d1a7sa_          68 RQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNAT-----VEAGTRCQVAGWGSQRSGGRLSRFPR  142 (225)
T ss_dssp             CEEEEEEEEECSSCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCEEEEEESCCSSTTCCCCSSCE
T ss_pred             cceeeeeeeeeeeccccccccccchhhcCCcccccccceeEEeeccccc-----cCCCceeEecccccccccccccccee
Confidence            3455677889999999999999999999999999999999999865543     3557889999999875 445567899


Q ss_pred             EEEeceeeccccccc
Q psy15989        329 MAIMPIVSHQQCLWS  343 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~  343 (363)
                      ++.++++++++|...
T Consensus       143 ~~~~~~~~~~~C~~~  157 (225)
T d1a7sa_         143 FVNVTVTPEDQCRPN  157 (225)
T ss_dssp             EEEEEECCGGGSCTT
T ss_pred             EEEEEEeehhhcccc
Confidence            999999999999754

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.20  E-value=3.3e-11  Score=101.56  Aligned_cols=102  Identities=21%  Similarity=0.325  Sum_probs=78.1

Q ss_pred             eEEEeeeEEEEcCCCCC-----------CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecC
Q psy15989        249 VVFTDVKRVHIYPTFNS-----------SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGY  317 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~-----------~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~  317 (363)
                      .....+...+.|+.|+.           ..+.+|||||||++|+.|++.++|+|||....       ..+..+++.|||.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~~~~~-------~~~~~~~~~g~g~  135 (237)
T d1gvza_          63 AQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEP-------KLGSTCYTSGWGL  135 (237)
T ss_dssp             CEEECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCC-------CTTCEEEEEEEEC
T ss_pred             ceeeeeeeEEeeeeeeeeeeecccccCccccccceEEEEECCceeccccccccccccccc-------ccceeEEEEeeee
Confidence            34556777777877653           23479999999999999999999999996543       4467899999997


Q ss_pred             CC--CCCccccceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        318 DE--NDRVSEELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       318 ~~--~~~~~~~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +.  ....+..|+++.+++++++.|+..+    ...+.+.++|+..
T Consensus       136 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~----~~~~~~~~~~~~~  177 (237)
T d1gvza_         136 ISTFTNRGSGTLQCVELRLQSNEKCARAY----PEKMTEFVLCATH  177 (237)
T ss_dssp             SCTTTCSEEEEEEEEEEEEECGGGGCSSC----GGGCCTTEEEEEC
T ss_pred             eccccccccceeeEEEEEeecHHHHHhhc----cccccccccccee
Confidence            64  3345778999999999999998653    3345566777653

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.8e-11  Score=99.27  Aligned_cols=88  Identities=20%  Similarity=0.254  Sum_probs=72.3

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccce
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEELK  328 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L~  328 (363)
                      ....+...+.|+.|+..+..+|||||+|++|+.|+++++|||||..+..     ......++++|||.+. .+..+..|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~l~  141 (218)
T d2z7fe1          67 RQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRR-----LGNGVQCLAMGWGLLGRNRGIASVLQ  141 (218)
T ss_dssp             CEEEEEEEEEESCCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCC-----CCTTCEEEEEESSBCSSSCCBCSBCE
T ss_pred             eeeeeeeeEeeeccccccccceEEEeeccccceeeeeeeeeeeccCccc-----cCCCcEEEEeccceeeccccccccee
Confidence            3456778889999999999999999999999999999999999976543     3456788999999874 445678899


Q ss_pred             EEEeceeeccccccc
Q psy15989        329 MAIMPIVSHQQCLWS  343 (363)
Q Consensus       329 ~~~v~ii~~~~C~~~  343 (363)
                      ++.+++.+ +.|+..
T Consensus       142 ~~~~~~~~-~~c~~~  155 (218)
T d2z7fe1         142 ELNVTVVT-SLCRRS  155 (218)
T ss_dssp             EEEEEEEC-TTCCTT
T ss_pred             EEEecccc-ccccee
Confidence            99999887 467543

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=99.14  E-value=5.8e-11  Score=99.67  Aligned_cols=105  Identities=21%  Similarity=0.391  Sum_probs=79.8

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEEL  327 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L  327 (363)
                      ..+...|.++++||.|+.....||||||+|+++ .++++++|||||......   ....+..+.+.|||....  ....|
T Consensus        65 ~~~~~~v~~i~~hp~y~~~~~~~DiALl~L~~~-~~~~~v~pi~l~~~~~~~---~~~~~~~~~~~g~~~~~~--~~~~~  138 (230)
T d2hlca_          65 GEAVVNSERIISHSMFNPDTYLNDVALIKIPHV-EYTDNIQPIRLPSGEELN---NKFENIWATVSGWGQSNT--DTVIL  138 (230)
T ss_dssp             CSEEEECSEEEECTTCBTTTTBTCCEEEECSCC-CCCSSCCCCBCCCGGGGG---CCCTTCEEEEEESSCCSS--CCCBC
T ss_pred             cccceeeEeEEeeecccccccccceeEEEeecc-cccccceeEEeecccccc---ccccceeEEEEeeccccc--cchhh
Confidence            345678999999999999999999999999875 688899999998654321   223466778888886532  35678


Q ss_pred             eEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        328 KMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       328 ~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      +++.+..+++++|...+.   .....+.++|+..
T Consensus       139 ~~~~~~~~~~~~c~~~~~---~~~~~~~~~~~~~  169 (230)
T d2hlca_         139 QYTYNLVIDNDRCAQEYP---PGIIVESTICGDT  169 (230)
T ss_dssp             EEEEEEEECHHHHHTTSC---TTSSCTTEEEECC
T ss_pred             heeeeccccchhhhhccc---cccccccceEecc
Confidence            999999999999976532   2345677888754

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.3e-11  Score=98.36  Aligned_cols=87  Identities=23%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             EEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccce
Q psy15989        250 VFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEELK  328 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L~  328 (363)
                      ....+..++.||.|+..+..||||||+|++|+.|+++++|||||..+..     ...+..++++||+.+. .+.....|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~diAll~L~~~~~~~~~v~picl~~~~~~-----~~~~~~~~~~G~~~~~~~~~~~~~l~  144 (221)
T d1fuja_          70 QQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQP-----VPHGTQCLAMGWGRVGAHDPPAQVLQ  144 (221)
T ss_dssp             CEEEEEEEEEECCCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEESSBSCSSSCBCSBCE
T ss_pred             ceeeeeeeEEEeeecCCCCccEEEEEEccccccccceEEEEEecccccc-----cCCCceEEEecccccccccccCccce
Confidence            4456888999999999999999999999999999999999999976542     3557788999999874 445567889


Q ss_pred             EEEeceeeccccc
Q psy15989        329 MAIMPIVSHQQCL  341 (363)
Q Consensus       329 ~~~v~ii~~~~C~  341 (363)
                      +..+++.+...|.
T Consensus       145 ~~~~~~~~~~~~~  157 (221)
T d1fuja_         145 ELNVTVVTFFCRP  157 (221)
T ss_dssp             EEEEEEECTTCCT
T ss_pred             eeeeeeeeecccc
Confidence            9988888765553

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=99.12  E-value=1.6e-10  Score=97.13  Aligned_cols=105  Identities=27%  Similarity=0.357  Sum_probs=79.6

Q ss_pred             EEEeeeEEEEcCCCCCCCC--CCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCcccc
Q psy15989        250 VFTDVKRVHIYPTFNSSNY--LGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEE  326 (363)
Q Consensus       250 v~~~V~~ii~h~~y~~~~~--~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~  326 (363)
                      ....+..+.+||.|+....  .+|||||+|+.|+.++..++|||||.....     ......+++.|||... .......
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~~-----~~~~~~~~~~g~g~~~~~~~~~~~  144 (236)
T d1elta_          70 QIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQI-----LPNNNPCYITGWGKTSTGGPLSDS  144 (236)
T ss_dssp             EEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCC-----CCTTCCEEEEESCCSSTTCCCCSB
T ss_pred             eeeeeeEEEEeeeecccccccCceEEEeeccCcceeecccceeecCchhcc-----cCCCceEEEecccccccCcccCcc
Confidence            4456667788888877654  579999999999999999999999976543     2456789999999875 3445678


Q ss_pred             ceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        327 LKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      |+++.+.++++++|.....  ....+...++|++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  177 (236)
T d1elta_         145 LKQAWLPSVDHATCSSSGW--WGSTVKTTMVCAGG  177 (236)
T ss_dssp             CEEEECCEECHHHHTSTTT--TGGGSCTTEEEECC
T ss_pred             ceeeeeEEEcHHHhhhhcc--cccccceeeeecCC
Confidence            9999999999999976532  22235566777653

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.4e-11  Score=100.03  Aligned_cols=106  Identities=30%  Similarity=0.487  Sum_probs=80.5

Q ss_pred             eEEEeeeEEEEcCCCCCC--CCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccc
Q psy15989        249 VVFTDVKRVHIYPTFNSS--NYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSE  325 (363)
Q Consensus       249 ~v~~~V~~ii~h~~y~~~--~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~  325 (363)
                      .....+.++++||.|+..  ...+|||||||++|+.++..++|+|||......   ....+..+.+.|||... ....++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~  141 (235)
T d1rfna_          65 EQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTN---IFLKFGSGYVSGWGRVFHKGRSAL  141 (235)
T ss_dssp             CEEEEEEEEEECTTCBTTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHH---HHHTTSEEEEEESCBSSTTSCBCS
T ss_pred             cceeeeeEEeeccCCCCCcCccCceEEEEEeCCCccCCCccceeeeccccccc---cccccceEEEeccccccccccccC
Confidence            345678889999999764  457999999999999999999999998643211   12356678899999774 445677


Q ss_pred             cceEEEeceeecccccccCccccccCCCCCeEEecc
Q psy15989        326 ELKMAIMPIVSHQQCLWSNPQFFSQFTSDETFCAGF  361 (363)
Q Consensus       326 ~L~~~~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~  361 (363)
                      .|+++.++++++.+|...+    ...+.++.+|++.
T Consensus       142 ~l~~~~~~~~~~~~c~~~~----~~~~~~~~~~~~~  173 (235)
T d1rfna_         142 VLQYLRVPLVDRATCLRST----KFTIYNNMFCAGF  173 (235)
T ss_dssp             BCEEEEEEBCCHHHHHHHC----SSCCCTTEEEESC
T ss_pred             cceEEEEeccccccccccc----CceecCCeeEeec
Confidence            8999999999999997553    2335566666643

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.05  E-value=2.2e-09  Score=90.80  Aligned_cols=99  Identities=12%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             eecCCCCCcceE--EEEEeeCCceeEEEEEEEeeCCEEEeeccCcccCCCCCcccCCcEEEEeceecccccC-CCCCcee
Q psy15989         24 QKTARGQWPWHV--ALYRTEGINLSYVCGGSLVSVNYVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFS-DEGGVQN  100 (363)
Q Consensus        24 ~~a~~~~~Pw~v--~l~~~~~~~~~~~CgGsLIs~~~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~-~~~~~~~  100 (363)
                      .-....++||.+  .|....    ..+|+|+||++++||||+||+.....    ....+.+..+........ .......
T Consensus        27 ~v~d~~~~p~~~v~~i~~~g----~~~GTGflI~~~~ILTa~HVv~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~   98 (246)
T d1qtfa_          27 HITDNARSPYNSVGTVFVKG----STLATGVLIGKNTIVTNYHVAREAAK----NPSNIIFTPAQNRDAEKNEFPTPYGK   98 (246)
T ss_dssp             ECSCCSSTTGGGEEEEEETT----TEEEEEEEEETTEEEECHHHHGGGTT----CGGGEEEEETCCCCTTTTCCCCTTCC
T ss_pred             eecccccCccccEEEEEeCC----CceEEEEEEeCCeEEEchhecccCCc----ceEEEEEecCCcceeeeeeecCCCce
Confidence            345667888854  443322    67899999999999999999965321    123455565554332211 1122344


Q ss_pred             eeeeEEEECCCCCCCCCCCCeEEEEeCCcccCCC
Q psy15989        101 KQVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSM  134 (363)
Q Consensus       101 ~~V~~i~~hp~y~~~~~~nDIALl~L~~~~~~~~  134 (363)
                      +.+..+..++.    ....|+|||+|+.+.....
T Consensus        99 ~~~~~~~~~~~----~~~~DiAll~l~~~~~~~~  128 (246)
T d1qtfa_          99 FEAEEIKESPY----GQGLDLAIIKLKPNEKGES  128 (246)
T ss_dssp             EEEEEEESCTT----CTTSCCEEEEECCCTTSCC
T ss_pred             EEEEEEEecCC----cccCceEEEEecccccccc
Confidence            55666655543    2346999999987765443

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.03  E-value=4e-10  Score=94.85  Aligned_cols=99  Identities=27%  Similarity=0.378  Sum_probs=76.4

Q ss_pred             EEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccceEEEecee
Q psy15989        257 VHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEELKMAIMPIV  335 (363)
Q Consensus       257 ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L~~~~v~ii  335 (363)
                      ++.|+.++.....+|||||+|..++.+++.++|+||+.....     ...+....++||+.+. .......|+...++++
T Consensus        79 ~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~  153 (240)
T d1gvkb_          79 VHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTI-----LANNSPCYITGWGLTRTNGQLAQTLQQAYLPTV  153 (240)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCC-----CCTTCCEEEEESCBSSTTCCBCSBCEEEECCEE
T ss_pred             EEEeecccccccCcceeeecccCcccccccccceeeccCccc-----cccccceeEeccccccccccccceeeEEEEEEE
Confidence            334555666778899999999999999999999999876543     2445677899999875 3445678999999999


Q ss_pred             ecccccccCccccccCCCCCeEEeccC
Q psy15989        336 SHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       336 ~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      +.+.|.....  ......++++|++..
T Consensus       154 ~~~~~~~~~~--~~~~~~~~~~c~~~~  178 (240)
T d1gvkb_         154 DYAICSSSSY--WGSTVKNSMVCAGGD  178 (240)
T ss_dssp             CHHHHTSTTT--TGGGCCTTEEEECCS
T ss_pred             cHHHhcceec--cCCccCCceEEecCC
Confidence            9999976532  233578889999654

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.1e-10  Score=97.11  Aligned_cols=100  Identities=22%  Similarity=0.285  Sum_probs=74.5

Q ss_pred             EEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCCCccccceEEEecee
Q psy15989        256 RVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDENDRVSEELKMAIMPIV  335 (363)
Q Consensus       256 ~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~L~~~~v~ii  335 (363)
                      +.+.|+.|......+||||++|++++.|++.++|+||+.....     ......+...|||..........|+++.+.++
T Consensus        87 ~~~~~~~~~~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (247)
T d1rjxb_          87 QEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYV-----VADRTECFITGWGETQGTFGAGLLMEAQLPVI  161 (247)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCC-----CCTTCEEEEEECCC----CCCSBCEEEEEEEE
T ss_pred             eEEeeccccCCCccchhhhhhhhcccccccccccccccccccc-----cCCCceeeecccccccCCCCCCcceEEEEEEE
Confidence            4455666666667899999999999999999999999865442     24456678889998766666788999999999


Q ss_pred             ecccccccCccccccCCCCCeEEeccC
Q psy15989        336 SHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       336 ~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      +++.|.....  ......++++|++..
T Consensus       162 ~~~~~~~~~~--~~~~~~~~~~c~~~~  186 (247)
T d1rjxb_         162 ENKVCNRYEF--LNGRVQSTELCAGHL  186 (247)
T ss_dssp             CHHHHTSTTT--TTTCSCTTEEEESCS
T ss_pred             chHHhhhhhc--cCcccccceeEEecc
Confidence            9999975432  233567889998753

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.92  E-value=1.5e-09  Score=90.37  Aligned_cols=93  Identities=24%  Similarity=0.348  Sum_probs=65.5

Q ss_pred             eeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCC-CCCccccceEEEe
Q psy15989        254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDE-NDRVSEELKMAIM  332 (363)
Q Consensus       254 V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~-~~~~~~~L~~~~v  332 (363)
                      +....+||.|+.....||||||||++++.++     +|++....      ...+..+.+.||+.+. ....+..|+..++
T Consensus        65 i~~~~i~~~~~~~~~~~DIAllkL~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (223)
T d1os8a_          65 VRSTKVLQAPGYNGTGKDWALIKLAQPINQP-----TLKIATTT------AYNQGTFTVAGWGANREGGSQQRYLLKANV  133 (223)
T ss_dssp             EEEEEEEECTTCSSSSCCCEEEEESSCCCSC-----CCEECCSS------TTSSSEEEEEESSCSSTTCCCCSBCEEEEE
T ss_pred             ceeeeeeecccccccceeeeeeeeeeeeecc-----cccccccc------cccccceEEeecccccccccccccccccee
Confidence            4556667777777788999999999998864     44432221      1346789999999774 4456788999999


Q ss_pred             ceeecccccccCccccccCCCCCeEEec
Q psy15989        333 PIVSHQQCLWSNPQFFSQFTSDETFCAG  360 (363)
Q Consensus       333 ~ii~~~~C~~~~~~~~~~~i~~~~iCag  360 (363)
                      +++++++|+..+.   ......+++|++
T Consensus       134 ~~~~~~~C~~~~~---~~~~~~~~~~~~  158 (223)
T d1os8a_         134 PFVSDAACRSAYG---NELVANEEICAG  158 (223)
T ss_dssp             EEECHHHHHHHHG---GGSCTTTEEEES
T ss_pred             eEeCHHHhhhhhc---CCCccCcceeee
Confidence            9999999976532   223344555554

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.4e-09  Score=92.20  Aligned_cols=111  Identities=28%  Similarity=0.295  Sum_probs=74.5

Q ss_pred             ceEEEeeeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCC-CCcccc
Q psy15989        248 YVVFTDVKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEN-DRVSEE  326 (363)
Q Consensus       248 ~~v~~~V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~-~~~~~~  326 (363)
                      ......+..++.|+.|......||||||||++|+.|+++|+|+|||.....  ......+..+.+.|||.+.. ...+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (254)
T d2bz6h1          67 DEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFS--ERTLAFVRFSLVSGWGQLLDRGATALE  144 (254)
T ss_dssp             CCEEEEEEEEEEETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHH--HHTGGGCCEEEEEESCBSSTTSCBCSB
T ss_pred             cceeeeeeeeeecccccccccccceeEEEecCcccccceEeeeecCccccc--cccccCCceEEEeccCccCCCCccccc
Confidence            345567788899999999999999999999999999999999999864321  11223567789999998753 344444


Q ss_pred             ceEEEeceeeccccccc-CccccccCCCCCeEEec
Q psy15989        327 LKMAIMPIVSHQQCLWS-NPQFFSQFTSDETFCAG  360 (363)
Q Consensus       327 L~~~~v~ii~~~~C~~~-~~~~~~~~i~~~~iCag  360 (363)
                      .+.....+...+.|... ............++|+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (254)
T d2bz6h1         145 LMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAG  179 (254)
T ss_dssp             CEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEES
T ss_pred             ceeeeecccchhhhhhhhhcccccccccccceeee
Confidence            55555555555443221 11111223455666653

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.67  E-value=8.9e-08  Score=76.69  Aligned_cols=24  Identities=33%  Similarity=0.342  Sum_probs=18.8

Q ss_pred             ccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        207 NVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       207 ~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      ....||||||++..  +  .++||++.+
T Consensus       131 ~~~~GdSGGPv~~~--~--~~vGi~sgg  154 (181)
T d2sgaa_         131 CAQPGDSGGSLFAG--S--TALGLTSGG  154 (181)
T ss_dssp             CCCTTCTTCEEEET--T--EEEEEEEEE
T ss_pred             eccCCCcCCeeEEC--C--EEEEEEEEe
Confidence            34579999999963  2  789999974

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.53  E-value=4.8e-07  Score=72.52  Aligned_cols=24  Identities=29%  Similarity=0.271  Sum_probs=18.6

Q ss_pred             ccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        207 NVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       207 ~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      ....||||||++..  +  .++||++..
T Consensus       135 ~~~~GdSGGPv~~~--~--~~vGi~~~g  158 (185)
T d2qaaa1         135 CAEPGDSGGPLYSG--T--RAIGLTSGG  158 (185)
T ss_dssp             CCCTTCTTCEEEET--T--EEEEEEEEE
T ss_pred             eecCCcccceeEEC--C--EEEEEEEEe
Confidence            34479999999963  2  789998874

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.41  E-value=4.1e-06  Score=67.64  Aligned_cols=29  Identities=28%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             CCCccCcccccceeEEEEcCccEEEEEEEEEE
Q psy15989        204 DVANVCNGDSGGGMVFKIDSAWYLRGIVSITV  235 (363)
Q Consensus       204 ~~~~~C~gdsGgpl~~~~~~~~~l~Gi~s~~~  235 (363)
                      .....+.||||||++... +  .++||+|...
T Consensus       134 ~~~~~~~GdSGGPv~~~~-g--~vvGI~sgg~  162 (198)
T d2h5ca1         134 GNACMGRGDSGGSWITSA-G--QAQGVMSGGN  162 (198)
T ss_dssp             ECSCCBTTCTTCEEECTT-C--BEEEEEEEEC
T ss_pred             EeeeeecccccccEEcCC-C--EEEEEEcccc
Confidence            345568899999999532 2  6899998753

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=8.2e-06  Score=67.02  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=46.3

Q ss_pred             CcceEEEEEeeCCceeEEEEEEEeeCC-EEEeeccCcccCCCCCc-ccCCcEEEEeceecccccCCCCCceeeeeeEEEE
Q psy15989         31 WPWHVALYRTEGINLSYVCGGSLVSVN-YVITAAHCVTKKPYDKP-VDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHI  108 (363)
Q Consensus        31 ~Pw~v~l~~~~~~~~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~-~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~  108 (363)
                      -|-+|.|...... .....+|.+|+++ +|||+||++........ .....+.|.+..           ...+..+-+..
T Consensus        11 ~~svV~I~~~~~~-~~~~GSGfvi~~~G~IlTn~HVV~~~~~~~~~~~~~~i~v~~~d-----------g~~~~a~vi~~   78 (221)
T d2z9ia2          11 VPSVVMLETDLGR-QSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSD-----------GRTAPFTVVGA   78 (221)
T ss_dssp             GGGEEEEEEEC-----CEEEEEECCTTSEEEECHHHHHHHHCCC------EEEEEETT-----------SCEECCEEEEE
T ss_pred             CCcEEEEEeccCC-cCcceEEEEEECCCEEEEcHHHhhccccccccccCceEEEEcCC-----------ceeeeeeeEee
Confidence            3678888655432 2446899999987 99999999864221111 112334444322           12333333333


Q ss_pred             CCCCCCCCCCCCeEEEEeCCcccC
Q psy15989        109 YPTFNSSNYLGDIALLQLSSDVDY  132 (363)
Q Consensus       109 hp~y~~~~~~nDIALl~L~~~~~~  132 (363)
                      .+       ..|||||++..+...
T Consensus        79 d~-------~~DlAll~~~~~~~~   95 (221)
T d2z9ia2          79 DP-------TSDIAVVRVQGVSGL   95 (221)
T ss_dssp             ET-------TTTEEEEECCSCCSC
T ss_pred             cc-------ccceeeeeecccccc
Confidence            32       359999999987543

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.4e-05  Score=64.71  Aligned_cols=57  Identities=21%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             EEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEEEe
Q psy15989         48 VCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALLQL  126 (363)
Q Consensus        48 ~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl~L  126 (363)
                      .-+|.+|+++ ||||+||++.+        ...+.|....           ...+..+-+...|       ..|+|||++
T Consensus        43 ~GSGf~i~~~G~IlT~~HVv~~--------~~~i~V~~~~-----------g~~~~a~vv~~d~-------~~dlall~~   96 (205)
T d1lcya2          43 NGSGFVVAADGLIVTNAHVVAD--------RRRVRVRLLS-----------GDTYEAVVTAVDP-------VADIATLRI   96 (205)
T ss_dssp             EEEEEEEETTTEEEECHHHHTT--------CSEEEEECTT-----------SCEEEEEEEEEET-------TTTEEEEEC
T ss_pred             ceEEEEEECCCeEEEechhhhh--------hhhccccccc-----------cccccceeeeeec-------ceeeEEEEe
Confidence            4689999987 99999999974        3455554321           1233343333443       359999999


Q ss_pred             CCcc
Q psy15989        127 SSDV  130 (363)
Q Consensus       127 ~~~~  130 (363)
                      +.+-
T Consensus        97 ~~~~  100 (205)
T d1lcya2          97 QTKE  100 (205)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            7653

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.01  E-value=3e-05  Score=63.87  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.1

Q ss_pred             EEEEEEEeeCC-EEEeeccCccc
Q psy15989         47 YVCGGSLVSVN-YVITAAHCVTK   68 (363)
Q Consensus        47 ~~CgGsLIs~~-~VLTAAhC~~~   68 (363)
                      ...+|.+|+++ ||||++|++..
T Consensus        56 s~GSGfiI~~~G~IlTn~HVv~~   78 (228)
T d1l1ja_          56 SLGSGFIFDPEGYILTNYHVVGG   78 (228)
T ss_dssp             EEEEEEEEETTTEEEEEHHHHSS
T ss_pred             cceEEEEeecCceEEeecccccc
Confidence            46789999977 99999999965

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=6.3e-05  Score=60.97  Aligned_cols=75  Identities=20%  Similarity=0.324  Sum_probs=47.3

Q ss_pred             CcceEEEEEeeC-------CceeEEEEEEEeeCC-EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeee
Q psy15989         31 WPWHVALYRTEG-------INLSYVCGGSLVSVN-YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQ  102 (363)
Q Consensus        31 ~Pw~v~l~~~~~-------~~~~~~CgGsLIs~~-~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~  102 (363)
                      .|-.|.|+....       ......-+|.+|+++ ||||++|.+..        .+.+.|.+..           ...+.
T Consensus        13 ~~sVV~I~~~~~~~~~~~~~~~~s~GSGfvi~~~G~IlTn~HVV~~--------~~~i~v~~~~-----------~~~~~   73 (210)
T d2qf3a1          13 APAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVIND--------ADQIIVALQD-----------GRVFE   73 (210)
T ss_dssp             GGGEEEEEEEEC----CCSCEEEEEEEEEECSTTCEEEEEHHHHTT--------CSEEEEECTT-----------SCEEE
T ss_pred             CCceEEEEEEEeccCCCCccccccceEEEEEECCceEEechhhccc--------cccccccccc-----------cccee
Confidence            466777754321       112346899999976 99999999864        3556665421           12334


Q ss_pred             eeEEEECCCCCCCCCCCCeEEEEeCCccc
Q psy15989        103 VKRVHIYPTFNSSNYLGDIALLQLSSDVD  131 (363)
Q Consensus       103 V~~i~~hp~y~~~~~~nDIALl~L~~~~~  131 (363)
                      .+-+..++       .+|+|||++..+..
T Consensus        74 ~~~~~~~~-------~~Dlall~~~~~~~   95 (210)
T d2qf3a1          74 ALLVGSDS-------LTDLAVLKINATGG   95 (210)
T ss_dssp             CEEEEEET-------TTTEEEEECCCSSC
T ss_pred             eEEecccc-------ccchhheecccccc
Confidence            44444444       35999999987644

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=97.66  E-value=0.00053  Score=54.73  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             cCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        208 VCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       208 ~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .-.|+|||||+...+....++|+++.+
T Consensus       152 t~~G~cGgplv~~~~~~~~IvGih~aG  178 (199)
T d2bhga1         152 TRAGYAGGAVLAKDGADTFIVGTHSAG  178 (199)
T ss_dssp             CCTTCTTCEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCCcCCeEEEecCCeEEEEEEEeCC
Confidence            346999999998777777899998875

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=97.35  E-value=0.00057  Score=55.41  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             ccCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        207 NVCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       207 ~~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      ..-.|.|||||+...++  .++||.++.
T Consensus       143 ~t~~GnSGGPlvd~~dG--~VVGIhs~~  168 (219)
T d1lvmb_         143 QTKDGQCGSPLVSTRDG--FIVGIHSAS  168 (219)
T ss_dssp             CCCTTCTTCEEEETTTC--CEEEEEEEE
T ss_pred             EcCCCCCCCceEEcCCC--EEEEEEEee
Confidence            45679999999974334  799999985

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00042  Score=57.45  Aligned_cols=68  Identities=24%  Similarity=0.389  Sum_probs=43.2

Q ss_pred             EEEEEEEeeCC--EEEeeccCcccCCCCCcccCCcEEEEeceecccccCCCCCceeeeeeEEEECCCCCCCCCCCCeEEE
Q psy15989         47 YVCGGSLVSVN--YVITAAHCVTKKPYDKPVDSDTLVIYLGKYHQHQFSDEGGVQNKQVKRVHIYPTFNSSNYLGDIALL  124 (363)
Q Consensus        47 ~~CgGsLIs~~--~VLTAAhC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~i~~hp~y~~~~~~nDIALl  124 (363)
                      ..-+|.+|+++  ||||.+|.+.+        ...+.|....           ...+.++-+...+       ..|+|||
T Consensus        76 ~~GSG~iI~~~~g~IlTn~HVv~~--------~~~~~v~~~~-----------~~~~~a~~~~~d~-------~~dlavl  129 (249)
T d1ky9a2          76 ALGSGVIIDADKGYVVTNNHVVDN--------ATVIKVQLSD-----------GRKFDAKMVGKDP-------RSDIALI  129 (249)
T ss_dssp             EEEEEEEEETTTTEEEEEHHHHTT--------EEEEEEEETT-----------SCEEEEEEEEEET-------TTTEEEE
T ss_pred             ccccEEEEeccCceEEeecccccc--------ceeeeeeecc-----------cccccceeeEecc-------chhhcee
Confidence            45689999853  99999999864        3455555432           1344455454443       3599999


Q ss_pred             EeCCcccCCCCccceEecCC
Q psy15989        125 QLSSDVDYSMYVRPVCLWDD  144 (363)
Q Consensus       125 ~L~~~~~~~~~v~picL~~~  144 (363)
                      +++.+-.    +.|+.|...
T Consensus       130 ~i~~~~~----~~~~~l~~~  145 (249)
T d1ky9a2         130 QIQNPKN----LTAIKMADS  145 (249)
T ss_dssp             EESSCCS----CCCCCBCCG
T ss_pred             eeccccc----ceEEEcCCc
Confidence            9986533    345666433

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=95.85  E-value=0.00089  Score=53.74  Aligned_cols=59  Identities=10%  Similarity=0.165  Sum_probs=43.6

Q ss_pred             EEeeeEEEEcCCCCC-CCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCC
Q psy15989        251 FTDVKRVHIYPTFNS-SNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYD  318 (363)
Q Consensus       251 ~~~V~~ii~h~~y~~-~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~  318 (363)
                      ..++.+++.||.|.. ....+|||||||+.++.+.  ..+++++....       ..+..+.+.|||..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~DiAll~l~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~G~~~~  135 (215)
T d1p3ca_          76 SANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNT--VGYRSIRQVTN-------LTGTTIKISGYPGD  135 (215)
T ss_dssp             CEEEEEEECCHHHHHHCCGGGCCEEEEESSCHHHH--HCCCCBCCCSC-------CTTCEEEEEECCHH
T ss_pred             eEEEeEEEEecccccCCCccceEEEEEeccCCCcc--ccccccccccc-------cCCceeEEEcCCCC
Confidence            456888999998854 4557899999999987754  34555654332       45788999999964

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=95.14  E-value=0.14  Score=39.34  Aligned_cols=23  Identities=22%  Similarity=0.054  Sum_probs=17.9

Q ss_pred             cCcccccceeEEEEcCccEEEEEEEEE
Q psy15989        208 VCNGDSGGGMVFKIDSAWYLRGIVSIT  234 (363)
Q Consensus       208 ~C~gdsGgpl~~~~~~~~~l~Gi~s~~  234 (363)
                      .-.|++||||+...    .++|+++.+
T Consensus       142 t~~g~cg~~~~~~~----~i~G~h~~g  164 (180)
T d1cqqa_         142 TKSGYCGGVLYKIG----QVLGIHVGG  164 (180)
T ss_dssp             CCTTCTTCEEEETT----EEEEEEEEE
T ss_pred             CCCcccCCeEEECC----CEEEEEecc
Confidence            44699999999643    799998875

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=94.52  E-value=0.012  Score=48.63  Aligned_cols=96  Identities=7%  Similarity=-0.021  Sum_probs=50.8

Q ss_pred             eeEEEEcCCCCCCCCCCceEEEeecceeecccceEeeeeCCCCCCccccccccCCcEEEEEecCCCCC-Cccccce--EE
Q psy15989        254 VKRVHIYPTFNSSNYLGDIALLQLSSDVDYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGYDEND-RVSEELK--MA  330 (363)
Q Consensus       254 V~~ii~h~~y~~~~~~nDIall~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~~~~~-~~~~~L~--~~  330 (363)
                      +.+..+|+.|+...+.+|++|+++..+..+    ..+.|+...        +....+...||+.+..+ .....++  ..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Di----all~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (263)
T d1arba_          85 TPASGANGDGSMSQTQSGSTVKATYATSDF----TLLELNNAA--------NPAFNLFWAGWDRRDQNYPGAIAIHHPNV  152 (263)
T ss_dssp             SGGGGSCCCCCCCCEEECEEEEEEETTTTE----EEEEESSCC--------CGGGCCEEBCEECCSCCCSCEEEEECGGG
T ss_pred             eeeeecccCccceeeecchheeecCCCcce----eeeeccccc--------ccccceeeeccCccccCCccccceecccc
Confidence            344566888877777777777777665432    223332211        22334566777754322 1222222  22


Q ss_pred             EeceeecccccccCccccccCCCCCeEEeccC
Q psy15989        331 IMPIVSHQQCLWSNPQFFSQFTSDETFCAGFR  362 (363)
Q Consensus       331 ~v~ii~~~~C~~~~~~~~~~~i~~~~iCag~~  362 (363)
                      .++.+....|...... +...+...|+|++..
T Consensus       153 ~~~~~~~~~~~~~~~~-~~~~~~~~~~c~~~~  183 (263)
T d1arba_         153 AEKRISNSTSPTSFVA-WGGGAGTTHLNVQWQ  183 (263)
T ss_dssp             CSCEEEEECSCCEEEC-TTSSSCSSEEEEECC
T ss_pred             ceeeeecccccchhhc-cCCCCCccEEEEEec
Confidence            4445555555433222 344577889999753

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.02  E-value=0.079  Score=42.75  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             CCCceEEEeeccee---ecccceEeeeeCCCCCCccccccccCCcEEEEEecC
Q psy15989        268 YLGDIALLQLSSDV---DYSMYVRPVCLWDDSTAPLQLSAVEGRDGTVIGWGY  317 (363)
Q Consensus       268 ~~nDIall~L~~~v---~~~~~v~picl~~~~~~~~~~~~~~~~~~~v~GWG~  317 (363)
                      ..+|||||+|+.+.   .+.+.+.|+.|.+...      ...|..++++||..
T Consensus       117 ~~~D~All~l~~~~~~~~~~~~~~~~~l~~s~~------~~~G~~v~~~GyP~  163 (242)
T d1agja_         117 AGVDLALIRLKPDQNGVSLGDKISPAKIGTSND------LKDGDKLELIGYPF  163 (242)
T ss_dssp             TTSCCEEEEECCCTTSCCHHHHSCCCEECCSTT------CCTTCEEEEEECCT
T ss_pred             CcCcEEEEEeccccccccccccCcceeeccccc------ccCCcEEEEEEcCC
Confidence            36799999997663   4556789999976432      24688899999964