Diaphorina citri psyllid: psy16064

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-----
MLYQGSITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDVKTKKYLKF
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEcccccccEEEccccccHHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccc
******ITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDVK*******
xxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHxxxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MLYQGSITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDVKTKKYLKF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
High-affinity choline transporter 1 Imports choline from the extracellular space to the neuron with high affinity. Choline uptake is the rate-limiting step in acetylcholine synthesis. Sodium ion and chloride ion dependent.confidentO02228
High affinity choline transporter 1 Imports choline from the extracellular space to the neuron with high affinity. Choline uptake is the rate-limiting step in acetylcholine synthesis. Sodium ion- and chloride ion-dependent.confidentQ9GZV3
High affinity choline transporter 1 Imports choline from the extracellular space to the neuron with high affinity. Rate-limiting step in acetylcholine synthesis. Sodium ion and chloride ion dependent.confidentQ9JMD7

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0030424 [CC]axonprobableGO:0044464, GO:0005623, GO:0005575, GO:0097458, GO:0043005, GO:0042995
GO:0043025 [CC]neuronal cell bodyprobableGO:0005575, GO:0097458, GO:0044297, GO:0005623, GO:0044464
GO:0008021 [CC]synaptic vesicleprobableGO:0043227, GO:0005737, GO:0043231, GO:0016023, GO:0031410, GO:0044444, GO:0044464, GO:0031982, GO:0005623, GO:0031988, GO:0005575, GO:0043229, GO:0044456, GO:0045202, GO:0044424, GO:0005622, GO:0030135, GO:0043226, GO:0030136
GO:0005307 [MF]choline:sodium symporter activityprobableGO:0015220, GO:0015294, GO:0022891, GO:0022892, GO:0015291, GO:0015081, GO:0015293, GO:0022890, GO:0015077, GO:0008324, GO:1901618, GO:0015075, GO:0022857, GO:0015370, GO:0003674, GO:0005215, GO:0046873, GO:0015665, GO:0022804
GO:0016021 [CC]integral to membraneprobableGO:0005575, GO:0044425, GO:0016020, GO:0031224
GO:0055085 [BP]transmembrane transportprobableGO:0006810, GO:0009987, GO:0044765, GO:0008150, GO:0044763, GO:0051234, GO:0051179, GO:0044699
GO:0033265 [MF]choline bindingprobableGO:0043169, GO:0043178, GO:0050997, GO:0043167, GO:0036094, GO:0003674, GO:0005488
GO:0008292 [BP]acetylcholine biosynthetic processprobableGO:0019226, GO:0042133, GO:0042136, GO:0044249, GO:0006807, GO:0023052, GO:0001505, GO:0044699, GO:1901576, GO:0044710, GO:0035637, GO:0071704, GO:0065007, GO:0065008, GO:1900619, GO:0032501, GO:0050877, GO:0009987, GO:0009058, GO:0008150, GO:0008152, GO:0007268, GO:0007267, GO:0007154, GO:0003008, GO:0044700, GO:0044707, GO:1900620, GO:0044237, GO:0044763, GO:0008291

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XQ2, chain A
Confidence level:very confident
Coverage over the Query: 14-36,54-153,196-490
View the alignment between query and template
View the model in PyMOL