Psyllid ID: psy16064

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-----
MLYQGSITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDVKTKKYLKF
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEcccccccEEEccccccHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccc
ccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEcccccEEEEEEEEEHHHHcHHHHHcHHHHHHHcccEEEccHHHHHHHHHHHHHHHHHHHHHcccEEEccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHEEEEEcHHHHHHEEccccccHHHHHHHHHHHHHHHHHccccccccccEEEccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHccccc
mlyqgsitgsrmidVYGIAGILTFYSIVLVVGIWagtkqknhgeEEVMLAGRSIGKIVGVLTLIAtwgggsyftgTAESLFSTGllwcqapvgySLTLVAGALIFakpmrdagyitmldpfqktygrrigglLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLgkqakashyqvDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKfvdwskipgydkpfdmtesnsvlPLVLRYLTPGWVTFFGLGAVSASVMSSadsvilgsgsmftrniyhqsfrpkaseYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGanhvnsygCLSSVVIGILLRitggepnlglpalikypwydyqLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVlnafpdvktkkylkf
mlyqgsitgsrMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSterwdvlnafpdvktkkylkf
MLYQGSITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGavsasvmssadsvILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMamllsaashllisklaaIVFEKKLLSTERWDVLNAFPDVKTKKYLKF
******ITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDVKT******
********GSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDV********
MLYQGSITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDVKTKKYLKF
*LYQGSITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDVK*******
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLYQGSITGSRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWDVLNAFPDVKTKKYLKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query515 2.2.26 [Sep-21-2011]
Q9VE46614 High-affinity choline tra yes N/A 0.844 0.708 0.422 1e-111
O02228576 High-affinity choline tra yes N/A 0.871 0.779 0.404 1e-104
Q9GZV3580 High affinity choline tra yes N/A 0.864 0.767 0.390 1e-96
Q8BGY9580 High affinity choline tra yes N/A 0.864 0.767 0.383 1e-95
Q9JMD7580 High affinity choline tra yes N/A 0.864 0.767 0.377 1e-94
Q8UWF0 584 High-affinity choline tra N/A N/A 0.368 0.325 0.427 4e-41
O06493492 Osmoregulated proline tra yes N/A 0.233 0.243 0.317 1e-05
>sp|Q9VE46|SC5A7_DROME High-affinity choline transporter 1 OS=Drosophila melanogaster GN=CG7708 PE=2 SV=2 Back     alignment and function desciption
 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/532 (42%), Positives = 320/532 (60%), Gaps = 97/532 (18%)

Query: 12  MIDVYGIAGILTFYSIVLVVGIWAGTKQK--NHGEEEVMLAGRSIGKIVGVLTLIATWGG 69
           MI++ G+  I+ FY ++LVVGIWAG K++  N  EEEVMLAGRSIG  VG+ T+ ATW G
Sbjct: 1   MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVGIFTMTATWVG 60

Query: 70  GSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRI 129
           G Y  GTAE+++++GL+WCQAP GY+L+LV G + FA PMR  GYITMLDP Q ++G R+
Sbjct: 61  GGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPMRKQGYITMLDPLQDSFGERM 120

Query: 130 GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHY 189
           GGLLFL                            PAL G++ + + +L++          
Sbjct: 121 GGLLFL----------------------------PALCGEVFWAAGILAA---------- 142

Query: 190 QVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL----- 244
                G +L VI+ +    SV +S+  A+ YT+ GGLYSV+YTDV+QL  I  GL     
Sbjct: 143 ----LGATLSVIIDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMCIP 198

Query: 245 ---------------------------------------------SYFQRILSLKSSTDA 259
                                                         YFQR+LS K++  A
Sbjct: 199 FAWSNEHVGSLSDLEVDWIGHVEPKKHWLYIDYGLLLVFGGIPWQVYFQRVLSSKTAGRA 258

Query: 260 VNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMT--ESNSVLPLVLRYLTP 317
             +S ++A  C  + IP  +IG +AK   W++   Y  P+ +T  E++ +LP+VL+YLTP
Sbjct: 259 QLLSYVAAAGCILMAIPPVLIGAIAKATPWNET-DYKGPYPLTVDETSMILPMVLQYLTP 317

Query: 318 GWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAAS 377
            +V+FFGLGAVSA+VMSSADS +L + SMF RN+Y   FR KASE E++WV+R++I+   
Sbjct: 318 DFVSFFGLGAVSAAVMSSADSSVLSAASMFARNVYKLIFRQKASEMEIIWVMRVAIIVVG 377

Query: 378 VISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRIT 437
           +++  +AL+  SIY L  +CSD+VYV LFPQL++VVH   H N+YG LS+ ++ + +R++
Sbjct: 378 ILATIMALTIPSIYGLWSMCSDLVYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLS 437

Query: 438 GGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFE 489
           GGE  LGL  LIKYP YD + ++Q+FPF+TMAMLLS  + + +S    ++FE
Sbjct: 438 GGEAILGLAPLIKYPGYDEETKEQMFPFRTMAMLLSLVTLISVSWWTKMMFE 489
Imports choline from the extracellular space to the neuron with high affinity. Rate-limiting step in acetylcholine synthesis. Sodium ion and chloride ion dependent.
Drosophila melanogaster (taxid: 7227)
>sp|O02228|SC5A7_CAEEL High-affinity choline transporter 1 OS=Caenorhabditis elegans GN=cho-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9GZV3|SC5A7_HUMAN High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1 Back     alignment and function description
>sp|Q8BGY9|SC5A7_MOUSE High affinity choline transporter 1 OS=Mus musculus GN=Slc5a7 PE=1 SV=1 Back     alignment and function description
>sp|Q9JMD7|SC5A7_RAT High affinity choline transporter 1 OS=Rattus norvegicus GN=Slc5a7 PE=2 SV=1 Back     alignment and function description
>sp|Q8UWF0|SC5A7_TORMA High-affinity choline transporter 1 OS=Torpedo marmorata GN=CHT1 PE=2 SV=1 Back     alignment and function description
>sp|O06493|OPUE_BACSU Osmoregulated proline transporter OS=Bacillus subtilis (strain 168) GN=opuE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query515
383859820 906 PREDICTED: high-affinity choline transpo 0.873 0.496 0.427 1e-118
328790780 825 PREDICTED: high-affinity choline transpo 0.873 0.545 0.430 1e-115
307209307 837 High-affinity choline transporter 1 [Har 0.891 0.548 0.422 1e-115
350416697 806 PREDICTED: high-affinity choline transpo 0.871 0.557 0.427 1e-114
340722302 806 PREDICTED: high-affinity choline transpo 0.823 0.526 0.442 1e-114
380025224 923 PREDICTED: high-affinity choline transpo 0.873 0.487 0.423 1e-114
242010072550 High-affinity choline transporter, putat 0.877 0.821 0.431 1e-114
340722300 814 PREDICTED: high-affinity choline transpo 0.823 0.520 0.435 1e-113
125774391608 GA20532 [Drosophila pseudoobscura pseudo 0.844 0.715 0.432 1e-112
195450913605 GK13737 [Drosophila willistoni] gi|19416 0.844 0.719 0.428 1e-111
>gi|383859820|ref|XP_003705390.1| PREDICTED: high-affinity choline transporter 1-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/555 (42%), Positives = 329/555 (59%), Gaps = 105/555 (18%)

Query: 15  VYGIAGILTFYSIVLVVGIWAGTKQKNH---GEEEVMLAGRSIGKIVGVLTLIATWGGGS 71
           V G+ G++ FY  VL +GIWAG  +K H   G++ +MLA R +G I+G+ TLIATW GG+
Sbjct: 5   VTGVIGVVVFYLTVLGIGIWAGIAKKKHPRQGQDAMMLANRGLGPILGLFTLIATWVGGA 64

Query: 72  YFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGG 131
           Y  GTAE +F+ GL WCQ P GYS++L+ GA++F +PMR A Y+TMLDPFQ+ YG  +GG
Sbjct: 65  YVNGTAEVMFTRGLAWCQVPFGYSISLLFGAVLFVRPMRKAEYVTMLDPFQERYGAGVGG 124

Query: 132 LLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQV 191
           LLFLP                            AL GD+ + ++VL +LG          
Sbjct: 125 LLFLP----------------------------ALCGDLFWCAAVLRALGS--------- 147

Query: 192 DLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLS------ 245
                SL V++G+   +SV  S +F   YT+ GGLY+V+YTD +QL  I+ GL       
Sbjct: 148 -----SLTVVIGLDSSISVCGSALFVAMYTVFGGLYAVAYTDAIQLACIIIGLGVAAPFT 202

Query: 246 ---------------------------------------------YFQRILSLKSSTDAV 260
                                                        YFQRILS++S++ A 
Sbjct: 203 VFHPAVSFEKNMAPREWLGEIKNEDLGEWVDGMLLLVFGGIPWQGYFQRILSMRSTSVAT 262

Query: 261 NVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWV 320
            +S+ S   C  +  P+A+IGV+A+  DWS + G++K     + N+ LP+VLRYLTP WV
Sbjct: 263 VLSIASTFGCMMMAFPSALIGVVARATDWSSVEGFNKSMLANDGNAALPVVLRYLTPQWV 322

Query: 321 TFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVIS 380
           +F GLGA+SA+VMSSADS IL S SMF+RN+Y  + RPKASE EL W+LR+S+L  +V+S
Sbjct: 323 SFVGLGAISAAVMSSADSSILASSSMFSRNVYRLTLRPKASERELNWILRISVLVITVLS 382

Query: 381 CSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGE 440
            SIAL+  S+YYLS +CSD+VYV LFPQL+ VVH  + V++YGCL+   I ++LR+ GGE
Sbjct: 383 TSIALTVDSVYYLSYLCSDLVYVVLFPQLLTVVHWPSLVDTYGCLAGYFIAVVLRLCGGE 442

Query: 441 PNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLST----E 496
            +LG+PALI+YP+YD + Q Q FPF+T AML++     L ++L    F + LL       
Sbjct: 443 KDLGVPALIEYPFYDPETQSQKFPFRTGAMLIA-----LFTQLITSFFTRNLLGKGYFPR 497

Query: 497 RWDVLNAFPDVKTKK 511
             DVL+ +   K+K 
Sbjct: 498 CCDVLSVYSPGKSKD 512

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328790780|ref|XP_392571.4| PREDICTED: high-affinity choline transporter 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307209307|gb|EFN86392.1| High-affinity choline transporter 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350416697|ref|XP_003491059.1| PREDICTED: high-affinity choline transporter 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722302|ref|XP_003399546.1| PREDICTED: high-affinity choline transporter 1-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380025224|ref|XP_003696377.1| PREDICTED: high-affinity choline transporter 1-like [Apis florea] Back     alignment and taxonomy information
>gi|242010072|ref|XP_002425800.1| High-affinity choline transporter, putative [Pediculus humanus corporis] gi|212509733|gb|EEB13062.1| High-affinity choline transporter, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340722300|ref|XP_003399545.1| PREDICTED: high-affinity choline transporter 1-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|125774391|ref|XP_001358454.1| GA20532 [Drosophila pseudoobscura pseudoobscura] gi|54638191|gb|EAL27593.1| GA20532 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195450913|ref|XP_002072687.1| GK13737 [Drosophila willistoni] gi|194168772|gb|EDW83673.1| GK13737 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query515
FB|FBgn0038641614 CG7708 [Drosophila melanogaste 0.864 0.724 0.420 5.3e-95
WB|WBGene00000501576 cho-1 [Caenorhabditis elegans 0.943 0.843 0.387 1.3e-86
UNIPROTKB|O02228576 cho-1 "High-affinity choline t 0.943 0.843 0.387 1.3e-86
ZFIN|ZDB-GENE-090313-273595 si:dkey-24h22.4 "si:dkey-24h22 0.493 0.426 0.358 8.3e-83
UNIPROTKB|E2RAJ0578 SLC5A7 "Uncharacterized protei 0.933 0.832 0.368 2e-81
MGI|MGI:1927126580 Slc5a7 "solute carrier family 0.850 0.755 0.384 1.4e-80
UNIPROTKB|Q9GZV3580 SLC5A7 "High affinity choline 0.844 0.75 0.386 6e-80
RGD|69270580 Slc5a7 "solute carrier family 0.850 0.755 0.380 9.7e-80
UNIPROTKB|F1P4Q0578 SLC5A7 "Uncharacterized protei 0.842 0.750 0.384 2e-79
UNIPROTKB|F1SU25579 SLC5A7 "Uncharacterized protei 0.848 0.754 0.372 3.3e-79
FB|FBgn0038641 CG7708 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 202/480 (42%), Positives = 303/480 (63%)

Query:    12 MIDVYGIAGILTFYSIVLVVGIWAGTKQK--NHGEEEVMLAGRSIGKIVGVLTLIATWGG 69
             MI++ G+  I+ FY ++LVVGIWAG K++  N  EEEVMLAGRSIG  VG+ T+ ATW G
Sbjct:     1 MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVGIFTMTATWVG 60

Query:    70 GSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRI 129
             G Y  GTAE+++++GL+WCQAP GY+L+LV G + FA PMR  GYITMLDP Q ++G R+
Sbjct:    61 GGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPMRKQGYITMLDPLQDSFGERM 120

Query:   130 GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHY 189
             GGLLFLPAL G++ + + +L++LG  A  S++       DM + +SV+ S      A  Y
Sbjct:   121 GGLLFLPALCGEVFWAAGILAALG--ATLSVII------DMDHRTSVILS---SCIAIFY 169

Query:   190 QV--DLTGVSLKVILGI-SDYLSVTISTMFAVAYTISGGL--YSVSYTDVLQ----LIFI 240
              +   L  V+   ++ +   ++ + +   FA +    G L    V +   ++     ++I
Sbjct:   170 TLFGGLYSVAYTDVIQLFCIFIGLWMCIPFAWSNEHVGSLSDLEVDWIGHVEPKKHWLYI 229

Query:   241 VFGLS----------YFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWS 290
              +GL           YFQR+LS K++  A  +S ++A  C  + IP  +IG +AK   W+
Sbjct:   230 DYGLLLVFGGIPWQVYFQRVLSSKTAGRAQLLSYVAAAGCILMAIPPVLIGAIAKATPWN 289

Query:   291 KIPGYDKPFDMT--ESNSVLPLVLRYLTPGWVTFFGLGXXXXXXXXXXXXXILGSGSMFT 348
             +   Y  P+ +T  E++ +LP+VL+YLTP +V+FFGLG             +L + SMF 
Sbjct:   290 ETD-YKGPYPLTVDETSMILPMVLQYLTPDFVSFFGLGAVSAAVMSSADSSVLSAASMFA 348

Query:   349 RNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQ 408
             RN+Y   FR KASE E++WV+R++I+   +++  +AL+  SIY L  +CSD+VYV LFPQ
Sbjct:   349 RNVYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSDLVYVILFPQ 408

Query:   409 LVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTM 468
             L++VVH   H N+YG LS+ ++ + +R++GGE  LGL  LIKYP YD + ++Q+FPF+TM
Sbjct:   409 LLMVVHFKKHCNTYGSLSAYIVALAIRLSGGEAILGLAPLIKYPGYDEETKEQMFPFRTM 468
GO:0005298 "proline:sodium symporter activity" evidence=ISS
GO:0008292 "acetylcholine biosynthetic process" evidence=ISS
GO:0016021 "integral to membrane" evidence=ISS
GO:0015220 "choline transmembrane transporter activity" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0003333 "amino acid transmembrane transport" evidence=ISS
WB|WBGene00000501 cho-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O02228 cho-1 "High-affinity choline transporter 1" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-273 si:dkey-24h22.4 "si:dkey-24h22.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAJ0 SLC5A7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1927126 Slc5a7 "solute carrier family 5 (choline transporter), member 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GZV3 SLC5A7 "High affinity choline transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|69270 Slc5a7 "solute carrier family 5 (choline transporter), member 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4Q0 SLC5A7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU25 SLC5A7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BGY9SC5A7_MOUSENo assigned EC number0.38300.86400.7672yesN/A
O02228SC5A7_CAEELNo assigned EC number0.40420.87180.7795yesN/A
Q9JMD7SC5A7_RATNo assigned EC number0.37760.86400.7672yesN/A
Q9VE46SC5A7_DROMENo assigned EC number0.42290.84460.7084yesN/A
Q9GZV3SC5A7_HUMANNo assigned EC number0.39020.86400.7672yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
cd11474464 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent c 1e-119
cd10322455 cd10322, SLC5sbd, Solute carrier 5 family, sodium/ 4e-35
cd11475464 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter 2e-22
COG0591493 COG0591, PutP, Na+/proline symporter [Amino acid t 5e-20
TIGR00813407 TIGR00813, sss, transporter, SSS family 2e-16
pfam00474406 pfam00474, SSF, Sodium:solute symporter family 3e-11
cd11494481 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg 1e-09
cd11477495 cd11477, SLC5sbd_u1, Uncharacterized bacterial sol 5e-09
TIGR02121487 TIGR02121, Na_Pro_sym, sodium/proline symporter 6e-09
TIGR02119471 TIGR02119, panF, sodium/pantothenate symporter 2e-08
COG4145473 COG4145, PanF, Na+/panthothenate symporter [Coenzy 2e-08
cd11489604 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporte 3e-07
cd11479454 cd11479, SLC5sbd_u3, Uncharacterized bacterial sol 2e-06
cd11486 635 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporte 8e-06
cd11478495 cd11478, SLC5sbd_u2, Uncharacterized bacterial sol 2e-05
cd11488 605 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporte 2e-05
PRK09442483 PRK09442, panF, sodium/panthothenate symporter; Pr 5e-05
cd10329564 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotrans 7e-05
cd10327472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 9e-05
cd10325523 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na 1e-04
cd11478495 cd11478, SLC5sbd_u2, Uncharacterized bacterial sol 3e-04
cd11495477 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subg 4e-04
cd11488605 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporte 8e-04
cd10329 564 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotrans 0.001
cd10325523 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na 0.002
PRK15419502 PRK15419, PRK15419, proline:sodium symporter PutP; 0.002
cd10327472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 0.003
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain Back     alignment and domain information 
 Score =  358 bits (922), Expect = e-119
 Identities = 167/520 (32%), Positives = 259/520 (49%), Gaps = 112/520 (21%)

Query: 18  IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
           + GI+ +Y ++L +G+WA  + KN   E+ ++AGRS+   VG  TL ATW GG    G A
Sbjct: 1   LIGIILYYLLILGIGLWASRRVKN--SEDFLVAGRSLPLPVGTFTLFATWFGGETILGAA 58

Query: 78  ESLFSTGLLW-CQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLP 136
           E+ +  GL    Q P GY+L L+ G L FAKPMR  G +T+ D F++ YGRR+  LL +P
Sbjct: 59  ETFYEEGLGGVAQDPFGYALCLILGGLFFAKPMRRMGLLTLGDFFRQRYGRRVEVLLSIP 118

Query: 137 ALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGV 196
           A+   + ++++ L +LG                                          +
Sbjct: 119 AVPSYLGWVAAQLVALG------------------------------------------L 136

Query: 197 SLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQ-------LIFIVFGLS---- 245
            L VILG+   L + IS    + YT+ GG++SV+YTDV+Q       L+ +V  +     
Sbjct: 137 VLSVILGLPVTLGILISAAIVLIYTLFGGMWSVAYTDVVQLIVIFIGLLLLVPFVLTNPG 196

Query: 246 --------------------------------------------YFQRILSLKSSTDAVN 261
                                                        FQR+LS KS   A  
Sbjct: 197 GVDASAAAAGKLRFFPWLGTKPSDWLIWIDAWLTLGLGSIPQQDVFQRVLSAKSEKTAQR 256

Query: 262 VSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVT 321
           +SL++        IP  +IG+ A  +D        +     ++  +LP++L+YLTP WV 
Sbjct: 257 LSLLAGFGYLLFAIPPLLIGLAAASIDPDLTSYGLE----DDAQLILPILLQYLTPLWVQ 312

Query: 322 FFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISC 381
              LGA+ +++MS+ADS +L   S+F+ NIY + FRPKAS+ EL+WV+R+S++    I+ 
Sbjct: 313 VLFLGALLSAIMSTADSALLAPSSVFSENIY-KPFRPKASDRELLWVMRISVVVFGAIAT 371

Query: 382 SIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEP 441
            +AL+  SIY L  + SD+  V LF  L+  ++     N+YG L+++++G++LR+ GGE 
Sbjct: 372 LLALTVESIYGLVELASDLTLVGLFVPLLAGLYWKRA-NTYGALAAIIVGLVLRLLGGEL 430

Query: 442 NLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLIS 481
            LGLP     P      Q Q FPF T+AM++ +   L +S
Sbjct: 431 LLGLPGYDIPP------QLQGFPFSTLAMVIGSLLPLAVS 464

Na+/choline co-transport by CHT is Cl- dependent. Human CHT (also called CHT1) is encoded by the SLC5A7 gene, and is expressed in the central nervous system. hCHT1-mediated choline uptake may be the rate-limiting step in acetylcholine synthesis, and essential for cholinergic transmission. Changes in this choline uptake in cortical neurons may contribute to Alzheimer's dementia. This subfamily belongs to the solute carrier 5 (SLC5) transporter family. Length = 464
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family Back     alignment and domain information
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family Back     alignment and domain information
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter Back     alignment and domain information
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter Back     alignment and domain information
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute binding domain Back     alignment and domain information
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional Back     alignment and domain information
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 515
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 100.0
PRK09442483 panF sodium/panthothenate symporter; Provisional 100.0
PRK15419502 proline:sodium symporter PutP; Provisional 100.0
PRK12488549 acetate permease; Provisional 100.0
PRK10484523 putative transporter; Provisional 100.0
PRK09395551 actP acetate permease; Provisional 100.0
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 100.0
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 100.0
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 100.0
COG4147529 DhlC Predicted symporter [General function predict 100.0
COG0591493 PutP Na+/proline symporter [Amino acid transport a 100.0
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 100.0
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 100.0
TIGR00813407 sss transporter, SSS family. have different number 100.0
KOG3761|consensus591 100.0
KOG2349|consensus585 100.0
COG4146571 Predicted symporter [General function prediction o 100.0
KOG2348|consensus 667 99.94
PRK00701439 manganese transport protein MntH; Reviewed 98.47
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.47
TIGR00814397 stp serine transporter. The HAAAP family includes 98.36
TIGR00912359 2A0309 spore germination protein (amino acid perme 98.08
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 98.07
PF03845320 Spore_permease: Spore germination protein; InterPr 97.99
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 97.96
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.92
TIGR00909429 2A0306 amino acid transporter. 97.92
PRK11017404 codB cytosine permease; Provisional 97.89
PRK15132403 tyrosine transporter TyrP; Provisional 97.82
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 97.81
PRK11021410 putative transporter; Provisional 97.71
PRK15049499 L-asparagine permease; Provisional 97.68
TIGR00837381 araaP aromatic amino acid transport protein. aroma 97.62
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.43
PRK10644445 arginine:agmatin antiporter; Provisional 97.42
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.41
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 97.39
PRK10249458 phenylalanine transporter; Provisional 97.38
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 97.33
PRK10238456 aromatic amino acid transporter; Provisional 97.31
COG1457442 CodB Purine-cytosine permease and related proteins 97.25
PRK10655438 potE putrescine transporter; Provisional 97.21
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.19
PRK11375484 allantoin permease; Provisional 97.18
PRK10580457 proY putative proline-specific permease; Provision 97.18
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.17
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.08
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.08
PRK13629443 threonine/serine transporter TdcC; Provisional 97.07
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.0
PRK10483414 tryptophan permease; Provisional 96.99
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 96.97
COG3949349 Uncharacterized membrane protein [Function unknown 96.94
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 96.92
PRK11387471 S-methylmethionine transporter; Provisional 96.86
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 96.85
TIGR00908442 2A0305 ethanolamine permease. The three genes used 96.77
TIGR00906557 2A0303 cationic amino acid transport permease. 96.65
PRK10746461 putative transport protein YifK; Provisional 96.65
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 96.63
TIGR00911501 2A0308 L-type amino acid transporter. 96.58
PRK15433439 branched-chain amino acid transport system 2 carri 96.27
PRK09950506 putative transporter; Provisional 96.1
PRK09664415 tryptophan permease TnaB; Provisional 96.09
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 95.99
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 95.98
TIGR00913478 2A0310 amino acid permease (yeast). 95.91
COG1292537 BetT Choline-glycine betaine transporter [Cell env 95.77
PRK09928679 choline transport protein BetT; Provisional 95.63
PRK11357445 frlA putative fructoselysine transporter; Provisio 95.34
COG0814415 SdaC Amino acid permeases [Amino acid transport an 95.24
KOG1303|consensus437 94.65
PRK10197446 gamma-aminobutyrate transporter; Provisional 94.57
TIGR00842453 bcct choline/carnitine/betaine transport. properti 94.25
TIGR00930 953 2a30 K-Cl cotransporter. 93.82
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 91.9
PLN03074473 auxin influx permease; Provisional 91.43
PTZ00206467 amino acid transporter; Provisional 89.89
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 88.58
PRK10836489 lysine transporter; Provisional 88.41
KOG1287|consensus479 87.62
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 82.9
KOG1286|consensus554 81.16
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information 
Probab=100.00  E-value=3.7e-64  Score=544.30  Aligned_cols=411  Identities=22%  Similarity=0.272  Sum_probs=356.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHH
Q psy16064         15 VYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGY   94 (515)
Q Consensus        15 ~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~   94 (515)
                      .|+++++++|+++++++|+|.+||.|  |.|||++|||++|+|+.++|+.||++|+++++|.||.+|++|+++.|..+++
T Consensus         1 ~~~~~~~~~y~~~~l~iG~~~~r~~~--s~~df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~   78 (487)
T TIGR02121         1 TEILITFGVYLIIMLLIGFYAYKKTT--NLSDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGL   78 (487)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcccC--chHHHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHH
Confidence            37889999999999999999999887  7999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHH-----hcCCCCchHHHHHhhCccc---hhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhh
Q psy16064         95 SLTLVAGALIFAKPMR-----DAGYITMLDPFQKTYGRRI---GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPAL  166 (515)
Q Consensus        95 ~~~~~l~~~~~a~~~r-----r~~~~T~~e~~~~Rfg~~~---~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~  166 (515)
                      .++.++.+++++||+|     |++..|+||++++|||++.   |.+.++..++..++|++.|+.+.|             
T Consensus        79 ~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~-------------  145 (487)
T TIGR02121        79 TIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGG-------------  145 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            8888877889999998     6789999999999999754   445666666677789999999887             


Q ss_pred             hhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH--
Q psy16064        167 LGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL--  244 (515)
Q Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~--  244 (515)
                                                   .+++.++|+|++.++++..+++++||.+||+|+|+|||++|+++|+++.  
T Consensus       146 -----------------------------~~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~~i~~~~~~~  196 (487)
T TIGR02121       146 -----------------------------KLFESTFGLDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQGLLMFFALVL  196 (487)
T ss_pred             -----------------------------HHHHHHhCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                         6888899999999999999999999999999999999999999998765  


Q ss_pred             ----------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy16064        245 ----------------------------------------------------SYFQRILSLKSSTDAVNVSLISATACFF  272 (515)
Q Consensus       245 ----------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~~~~  272 (515)
                                                                          +++||++++||+|++||+..++..+..+
T Consensus       197 v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~k~~~~~~~~~~~~~~~  276 (487)
T TIGR02121       197 VPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWGLGYFGQPHIIVRFMAIRSHKELPKARRIGMSWMIL  276 (487)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHHHHhccchHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence                                                                5689999999999999999988766555


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhh
Q psy16064        273 IVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIY  352 (515)
Q Consensus       273 ~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~  352 (515)
                      ..+...++|+.+....++.    |+ .+..++|+++|.++++++||++.|+++++++||.|||+||.+|+.++.++||+|
T Consensus       277 ~~~~~~~~g~~g~~~~~~~----p~-~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy  351 (487)
T TIGR02121       277 SLLGAIAVGLTGIAYFNKN----PH-VELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSALTEDFY  351 (487)
T ss_pred             HHHHHHHHHHHHHHHhccC----cc-ccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555667777776654321    11 123578999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHHHHHH
Q psy16064        353 HQSFRPKASEYELMWVLRLSILAASVISCSIALSGA-SIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIG  431 (515)
Q Consensus       353 ~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~-~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s~i~G  431 (515)
                      +++.||+++|||+++++|++++++++++..+++..+ ++.++...++...++.++|++++++|||| .|++|+++||++|
T Consensus       352 ~~~~~~~~s~~~~l~v~R~~~v~~~~~~~~~a~~~~~~i~~l~~~~~~~~~~~~~p~~llgl~w~r-~t~~ga~~g~i~G  430 (487)
T TIGR02121       352 KAFFKREASQKELVMVGRLSVLVIAIIAIILAMNPNSSILNLVGYAWAGFGAAFGPVVLFSLYWKR-MTRNGALAGMIIG  430 (487)
T ss_pred             HHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            999999999999999999999999999999998765 57777777777677788999999999999 9999999999999


Q ss_pred             HHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhccccccccc
Q psy16064        432 ILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEK  490 (515)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~  490 (515)
                      +++.+.+...         .+..     . ..+...+++.+|+++++++|++||++++|
T Consensus       431 ~~~~~~~~~~---------~~~~-----~-~~~~~~~g~~~~~~~~~~~s~~t~~~~~~  474 (487)
T TIGR02121       431 AVTVIVWISK---------LGGS-----F-GLYEIVPGFIISSIVIVVVSKLTKAPPAA  474 (487)
T ss_pred             HHHHHHHHHH---------hccc-----c-chhHhHHHHHHHHHHHHHHHhccCCCCHH
Confidence            9998776310         0100     0 01223468899999999999999988765

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>KOG3761|consensus Back     alignment and domain information
>KOG2349|consensus Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG2348|consensus Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303|consensus Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>KOG1287|consensus Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
2xq2_A 593 Structure Of The K294a Mutant Of Vsglt Length = 593 1e-04
3dh4_A530 Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOU 8e-04
2xq2_B 593 Structure Of The K294a Mutant Of Vsglt Length = 593 8e-04
>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt Length = 593 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 43/222 (19%)
Query: 24  FYSIVLVVGIWAGTKQK--NHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLF 81
           + +I++ VG+W    +K      E+  LAG+S+       +LIA       F G + S +
Sbjct: 19  YVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGY 78
Query: 82  STGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGD 141
           S GL         ++TL+     F     + G  T+ +  +K + +++  +L   A+   
Sbjct: 79  SIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTIL---AVFWI 135
Query: 142 MLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVI 201
            LY+   L+S+                  LYL                     G++L+ I
Sbjct: 136 SLYIFVNLTSV------------------LYLG--------------------GLALETI 157
Query: 202 LGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
           LGI    S+    +FA+ Y+I GGL +V +TDV+Q+ F+V G
Sbjct: 158 LGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLG 199
>pdb|3DH4|A Chain A, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND GALACTOSE FROM Vibrio Parahaemolyticus Length = 530 Back     alignment and structure
>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt Length = 593 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 4e-14
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593 Back     alignment and structure
 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 88/480 (18%), Positives = 179/480 (37%), Gaps = 55/480 (11%)

Query: 21  ILTFYSIVLVVGIWAG--TKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAE 78
              + +I++ VG+W     K      E+  LAG+S+       +LIA       F G + 
Sbjct: 16  FAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSG 75

Query: 79  SLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPAL 138
           S +S GL         ++TL+     F     + G  T+ +  +K + +++  +L +  +
Sbjct: 76  SGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWI 135

Query: 139 LGDML-YLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVL--------SSLGKQAKASHY 189
              +   L+SVL   G       L L  +LG  L  S +         S  G    A  +
Sbjct: 136 SLYIFVNLTSVLYLGG-------LALETILGIPLMYSILGLALFALVYSIYGGL-SAVVW 187

Query: 190 ------------QVDLTGVSLKVILGISDYLSVTISTMFAV--AYTISGGLYSVSYTDVL 235
                           T +++  I G   + +     + A    + +     +  Y ++ 
Sbjct: 188 TDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLP 247

Query: 236 QLIFIVFG-----LSYF-------QRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVL 283
            +  ++ G     L Y+       QR L+ KS ++A    + +A     +     + G+ 
Sbjct: 248 GIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIA 307

Query: 284 A-------KFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSA 336
           A       + +                ++   P + ++L P  V      A++A+++SS 
Sbjct: 308 AYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFL-PVGVKGVVFAALAAAIVSSL 366

Query: 337 DSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVV 396
            S++  + ++FT +IY +   P + +++L+ V R + + A +I+  IA     I      
Sbjct: 367 ASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQY 426

Query: 397 CSDVVYVTLFPQLVLVVHGA--NHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWY 454
             +   +     L + + G       S G +  VV  I   +      L +P + +  + 
Sbjct: 427 IQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYT 486
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query515
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 100.0
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.1
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.63
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.38
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 96.82
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 95.78
4ain_A539 Glycine betaine transporter BETP; membrane protein 94.58
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
Probab=100.00  E-value=2.7e-62  Score=540.13  Aligned_cols=418  Identities=22%  Similarity=0.273  Sum_probs=342.8

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhhccCC--CChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHH
Q psy16064         11 RMIDVYGIAGILTFYSIVLVVGIWAGTKQKN--HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWC   88 (515)
Q Consensus        11 ~~~~~~~~i~i~~y~~~~l~ig~~~~r~~~~--~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~   88 (515)
                      ..++..|++++++|+++++++|+|.+||.|+  +|.|||++|||++|+|..++|+.||++|+++++|.+|.+|++|+++.
T Consensus         6 ~~~~~~d~~i~~~yl~~~~~ig~~~~r~~~~~~~~~~dy~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~   85 (593)
T 2xq2_A            6 HGLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIA   85 (593)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHTCC-------------------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGG
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHH
Confidence            4578999999999999999999999988763  36899999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHH-HHHHHHHHHHHhhchhhhhhhhhhhhhh
Q psy16064         89 QAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALL-GDMLYLSSVLSSLGKQAKASLLFLPALL  167 (515)
Q Consensus        89 ~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii-~~~~~la~~l~a~g~~~~~~~~~lp~~~  167 (515)
                      ++.+++.++.++.++++.|++||.+..|++|++++|||++.|.+.++..++ ..+++++.|+.+.|              
T Consensus        86 ~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~--------------  151 (593)
T 2xq2_A           86 SYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGG--------------  151 (593)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            777888888888888999999999999999999999998888777776664 34568888888876              


Q ss_pred             hhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH---
Q psy16064        168 GDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---  244 (515)
Q Consensus       168 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---  244 (515)
                                                  .+++.++|+|++.++++.++++++||..||+|+++|||++|+++|+++.   
T Consensus       152 ----------------------------~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v  203 (593)
T 2xq2_A          152 ----------------------------LALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMT  203 (593)
T ss_dssp             ----------------------------HHHHHHHCCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------HHHHHhcCccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence                                        6788999999999999999999999999999999999999999987643   


Q ss_pred             -----------------------------------------------------------------HHHHHHhcCCChHHH
Q psy16064        245 -----------------------------------------------------------------SYFQRILSLKSSTDA  259 (515)
Q Consensus       245 -----------------------------------------------------------------~~~qr~~aak~~~~a  259 (515)
                                                                                       +++||++++||+|++
T Consensus       204 ~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~k~a  283 (593)
T 2xq2_A          204 TYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEA  283 (593)
T ss_dssp             HHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSCHHHH
T ss_pred             HHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCCHHHH
Confidence                                                                             247899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC------C----CCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHH
Q psy16064        260 VNVSLISATACFFIVIPAAIIGVLAKFVDWSKI------P----GYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVS  329 (515)
Q Consensus       260 r~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~------~----g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~ll  329 (515)
                      ||+.++++.+..++.+....+|+.++....+..      .    ..|   +..|+|+++|.++ +.+|+++.|+++++++
T Consensus       284 r~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p---~~~~~d~~~p~l~-~~lp~~l~gl~~a~ll  359 (593)
T 2xq2_A          284 QKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLP---SAANADKAYPWLT-QFLPVGVKGVVFAALA  359 (593)
T ss_dssp             HHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCC---CSTBGGGHHHHHH-HTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCC---CCCChhhHHHHHH-HHcChhHHHHHHHHHH
Confidence            999999998877777777788988876621100      0    011   2357899999999 9999999999999999


Q ss_pred             HHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHhhhhhhH
Q psy16064        330 ASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALS---GASIYYLSVVCSDVVYVTLF  406 (515)
Q Consensus       330 AA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~---~~~i~~l~~~~~~~~~~~l~  406 (515)
                      ||.|||+||.+++.++.+++|+|++++||+++|||+++++|+.++++++++..++..   .++++++....++..+++++
T Consensus       360 aA~mST~~s~l~a~st~~~~Diy~~~~~~~~s~~~~l~v~Ri~~v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~  439 (593)
T 2xq2_A          360 AAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGIL  439 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999999999999999999999999999999999974   34677777767777788999


Q ss_pred             HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhccccc
Q psy16064        407 PQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAI  486 (515)
Q Consensus       407 ~~ll~gl~wkr~~t~~ga~~s~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~  486 (515)
                      |++++++|||| .|++|+++|+++|+++++.+...         .+..      ...+...+++.+|+++++++|+++|+
T Consensus       440 ~~~llglfwkr-~~~~gA~~g~i~G~~~~~~~~~~---------~~~~------~~~~~~~~~~~~~~iv~v~vSl~t~~  503 (593)
T 2xq2_A          440 AVFLLGLFWKK-TTSKGAIIGVVASIPFALFLKFM---------PLSM------PFMDQMLYTLLFTMVVIAFTSLSTSI  503 (593)
T ss_dssp             HHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHHHHS---------SCCC------CHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH---------cCCc------cHHHHHHHHHHHHHHHHHhheeecCC
Confidence            99999999999 99999999999999999876320         1111      11233457899999999999999988


Q ss_pred             cccc
Q psy16064        487 VFEK  490 (515)
Q Consensus       487 ~~~~  490 (515)
                      ++||
T Consensus       504 ~~~~  507 (593)
T 2xq2_A          504 NDDD  507 (593)
T ss_dssp             SSSC
T ss_pred             Cchh
Confidence            7653
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00