Diaphorina citri psyllid: psy16424

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
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MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHccccEEEEEEECcccccEEEEEEcccccEEEEEEccEEEcccccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccccEEEEEECcccEEEEEEEEEEEcccEEEEEECcccEEEEEEEEccccccccccccEEEEEcccccccccc
******RLRR***********************************************************IGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMG******
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MLRRQARLRREYLYxxxxxxxxxxxxxxxxxxxxxLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
U3 small nucleolar ribonucleoprotein protein IMP4 Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.very confidentQ0VD01
U3 small nucleolar ribonucleoprotein protein IMP4 Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.very confidentQ8VHZ7
U3 small nucleolar ribonucleoprotein protein imp4 Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.very confidentO13823

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0016363 [CC]nuclear matrixconfidentGO:0034399, GO:0005575, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0008150 [BP]biological_processconfident
GO:0005730 [CC]nucleolusconfidentGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0030529 [CC]ribonucleoprotein complexconfidentGO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0000003 [BP]reproductionprobableGO:0008150
GO:0043047 [MF]single-stranded telomeric DNA bindingprobableGO:0043565, GO:0043566, GO:0042162, GO:1901363, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:0097159, GO:0003697
GO:0030515 [MF]snoRNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0040010 [BP]positive regulation of growth rateprobableGO:0045927, GO:0040008, GO:0040009, GO:0065007, GO:0048518, GO:0008150, GO:0050789
GO:0006898 [BP]receptor-mediated endocytosisprobableGO:0006897, GO:0016192, GO:0006810, GO:0008150, GO:0051234, GO:0051179
GO:0009792 [BP]embryo development ending in birth or egg hatchingprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0009790, GO:0008150, GO:0007275, GO:0044699
GO:0005732 [CC]small nucleolar ribonucleoprotein complexprobableGO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424, GO:0030529
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0032040 [CC]small-subunit processomeprobableGO:0032991, GO:0044464, GO:0030684, GO:0005623, GO:0030529, GO:0005575, GO:0044424, GO:0005622
GO:0040007 [BP]growthprobableGO:0008150
GO:0002119 [BP]nematode larval developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0009791, GO:0002164, GO:0008150, GO:0007275, GO:0044699
GO:0034457 [CC]Mpp10 complexprobableGO:0030686, GO:0031974, GO:0030684, GO:0043229, GO:0043228, GO:0043227, GO:0043226, GO:0044446, GO:0031981, GO:0005730, GO:0005634, GO:0030529, GO:0044452, GO:0043234, GO:0032991, GO:0043231, GO:0043232, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0070013, GO:0044428, GO:0044424, GO:0044422
GO:0015030 [CC]Cajal bodyprobableGO:0044446, GO:0016604, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422
GO:0042134 [MF]rRNA primary transcript bindingprobableGO:0097159, GO:0019843, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0000466 [BP]maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)probableGO:0090304, GO:0034641, GO:0006807, GO:0034660, GO:0071840, GO:0006139, GO:0044260, GO:1901360, GO:0042254, GO:0071704, GO:0010467, GO:0006364, GO:0022613, GO:0034470, GO:0009987, GO:0006725, GO:0000460, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0044238, GO:0016072, GO:0044237, GO:0043170, GO:0044085, GO:0006396
GO:0000463 [BP]maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)probableGO:0090304, GO:0034641, GO:0006807, GO:0000470, GO:0034660, GO:0071840, GO:0042273, GO:0006139, GO:0044260, GO:1901360, GO:0042254, GO:0071704, GO:0010467, GO:0006364, GO:0022613, GO:0034470, GO:0009987, GO:0006725, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0044238, GO:0016072, GO:0044237, GO:0043170, GO:0044085, GO:0006396
GO:0030519 [MF]snoRNP bindingprobableGO:0043021, GO:0003674, GO:0005488
GO:0001510 [BP]RNA methylationprobableGO:0016070, GO:0006139, GO:0043170, GO:0044260, GO:0044238, GO:0009987, GO:0006725, GO:0034641, GO:0044237, GO:0009451, GO:0090304, GO:0071704, GO:0043412, GO:0006807, GO:0043414, GO:0008152, GO:0008150, GO:0032259, GO:1901360, GO:0046483
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0030687 [CC]preribosome, large subunit precursorprobableGO:0032991, GO:0044464, GO:0030684, GO:0005623, GO:0030529, GO:0005575, GO:0044424, GO:0005622
GO:0000478 [BP]endonucleolytic cleavage involved in rRNA processingprobableGO:0090304, GO:0090305, GO:0034641, GO:0006807, GO:0034660, GO:1901360, GO:0006139, GO:0044260, GO:0071840, GO:0042254, GO:0071704, GO:0010467, GO:0006364, GO:0022613, GO:0016070, GO:0034470, GO:0009987, GO:0006725, GO:0008150, GO:0008152, GO:0000469, GO:0046483, GO:0090502, GO:0044238, GO:0016072, GO:0090501, GO:0044237, GO:0043170, GO:0044085, GO:0006396
GO:0030532 [CC]small nuclear ribonucleoprotein complexprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0000027 [BP]ribosomal large subunit assemblyprobableGO:0042273, GO:0006996, GO:0071826, GO:0022607, GO:0043933, GO:0009987, GO:0042255, GO:0042254, GO:0016043, GO:0065003, GO:0022618, GO:0044763, GO:0044699, GO:0034622, GO:0022613, GO:0008150, GO:0070925, GO:0071840, GO:0044085

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2CXH, chain A
Confidence level:very confident
Coverage over the Query: 93-225
View the alignment between query and template
View the model in PyMOL
Template: 1W94, chain A
Confidence level:confident
Coverage over the Query: 97-266
View the alignment between query and template
View the model in PyMOL