Psyllid ID: psy16424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEcccccEEEEEEccEEEcccccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccccEEEEEEEcccEEEEEEEEEEEcccEEEEEEEcccEEEEEEEEccccccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccHHcccccccccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHccccHHHcccccEHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEEEccccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEEEEEEcccEEEEEEccccEEEEEEEEEcccccccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKsldgnkkiptdLKNQALSLQRkldwedegpeLAVSIgtetsggglthqddeyrwagiedpkimittsrdpssRLKMFVKELRlifpnsqrmnrgnyEMKQLIHACRANDVTDFIVVhehrgipdtlvichlpygptayftmsdvimrhdipdlgtmseqyphlvFHNFKTQLGQRVMSILKYlfpvpkedskrivtfanhddyisfrhhnykrdgkdielkevgprfQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR
Flexible Loop (DISEMBL)
mlrrqarlrreylyrksleekqraiqekkdrlrksldgnkkiptdlknqALSLQRKLDWEDEGPELAVsigtetsggglthqDDEYrwagiedpkimittsrdpssrLKMFVKELRlifpnsqrmnrGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFAnhddyisfrhhnykrdgkdielkevgprFQLKLYEIKlgtldtveaADTEWALFRmgrilnsr
Low Complexity Region (SEG)
MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR
Disordered region (IsUnstruct)
***********************************************************************************DEYRWAGIEDPKIMIT********LKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRIL***
Disordered Region (DISOPRED)
******RLRR***********************************************************IGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALF**G******
Disordered Region (DISEMBL)
MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR
Disordered Region (DISPRO)
MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWED*****************LTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRM*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRRQARLRREYLYxxxxxxxxxxxxxxxxxxxxxLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q5R947	291	U3 small nucleolar ribonu	yes	N/A	0.884	0.896	0.622	1e-102
Q96G21	291	U3 small nucleolar ribonu	yes	N/A	0.884	0.896	0.622	1e-102
Q5PQR5	291	U3 small nucleolar ribonu	yes	N/A	0.884	0.896	0.619	1e-102
Q8VHZ7	291	U3 small nucleolar ribonu	yes	N/A	0.884	0.896	0.619	1e-102
Q0VD01	291	U3 small nucleolar ribonu	yes	N/A	0.884	0.896	0.608	1e-100
O62518	292	Brix domain-containing pr	yes	N/A	0.908	0.917	0.571	2e-98
O13823	289	U3 small nucleolar ribonu	yes	N/A	0.928	0.948	0.515	7e-80
P53941	290	U3 small nucleolar ribonu	yes	N/A	0.969	0.986	0.469	7e-76
Q755T8	283	U3 small nucleolar ribonu	yes	N/A	0.942	0.982	0.488	9e-75
Q6C804	283	U3 small nucleolar ribonu	yes	N/A	0.942	0.982	0.454	4e-74

>sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/273 (62%), Positives = 217/273 (79%), Gaps = 12/273 (4%)

Query: 12  YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
           YLYRK+ EE QR+ QE+K+RLR++L+ N+ IPT+L+ +AL+LQ  L+++D G E      
Sbjct: 12  YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGE------ 65

Query: 72  TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
                G  +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66  -----GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
           +  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+MRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180

Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
           E  PHL+ H F ++LG+RV  IL+YLFPVPK+DS R++TFAN DDYISFRHH YK+ D +
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240

Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
           ++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.
Pongo abelii (taxid: 9601)

>sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/273 (62%), Positives = 217/273 (79%), Gaps = 12/273 (4%)

Query: 12  YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
           YLYRK+ EE QR+ QE+K+RLR++L+ N+ IPT+L+ +AL+LQ  L+++D G E      
Sbjct: 12  YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGE------ 65

Query: 72  TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
                G  +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66  -----GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
           +  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+MRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180

Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
           E  PHL+ H F ++LG+RV  IL+YLFPVPK+DS R++TFAN DDYISFRHH YK+ D +
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240

Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
           ++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.

Homo sapiens (taxid: 9606)

>sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 169/273 (61%), Positives = 218/273 (79%), Gaps = 12/273 (4%)

Query: 12  YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
           YLYRK+ EE QR++QEKK+R++++L+ N+ IPT+L+ +AL+LQ  L+++D G E      
Sbjct: 12  YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGE------ 65

Query: 72  TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
                G  +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66  -----GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
           +  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+MRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180

Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
           E  PHL+ H F ++LG+RV  IL+YLFPVPK+DS R++TFAN DDYISFRHH YK+ D +
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240

Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
           ++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.

Rattus norvegicus (taxid: 10116)

>sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 169/273 (61%), Positives = 218/273 (79%), Gaps = 12/273 (4%)

Query: 12  YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
           YLYRK+ EE QR++QEKK+R++++L+ N+ IPT+L+ +AL+LQ  L+++D G E      
Sbjct: 12  YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGE------ 65

Query: 72  TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
                G  +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66  -----GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
           +  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+MRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180

Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
           E  PHL+ H F ++LG+RV  IL+YLFPVPK+DS R++TFAN DDYISFRHH YK+ D +
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240

Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
           ++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.

Mus musculus (taxid: 10090)

>sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/273 (60%), Positives = 215/273 (78%), Gaps = 12/273 (4%)

Query: 12  YLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIG 71
           YLYRK+ EE +R  QE+KD++R++L+ N+ IPT+L+ +AL+LQ  L+++D G E      
Sbjct: 12  YLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFDDAGGE------ 65

Query: 72  TETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYE 131
                G   H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP +QRMNRG +E
Sbjct: 66  -----GVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 132 MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS 191
           +  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+MRHDIPDLGT S
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTAS 180

Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKR-DGK 250
           E  PHL+ H F ++LG+RV  IL+YLFPVPK+DS+R++TFAN DDYISFRHH YK+ + +
Sbjct: 181 EAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKTNHR 240

Query: 251 DIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
           ++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing.

Bos taurus (taxid: 9913)

>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=4 SV=1

 Score =  358 bits (920), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 164/287 (57%), Positives = 221/287 (77%), Gaps = 19/287 (6%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           M+RR+ RLRRE+++RKSLEEKQ++++EK++++R +L+ N KI  +L+  A+ L +  DW 
Sbjct: 1   MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDW- 59

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
                          GG     D EYRWAG +DPKI+ITTSRDPSSRLKMF KE++LIFP
Sbjct: 60  ---------------GGQQYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFP 104

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           N+QR+NRG+Y++KQ++ A +A D TD I+  E RG PD +++CHLP+GPTA+F+M++V+M
Sbjct: 105 NAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVM 164

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIP+ GTMSEQYPHL+F N  ++LG R  +ILK+LFPVPK DSKRI+TF+N +DYISF
Sbjct: 165 RHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISF 224

Query: 241 RHHNYK--RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH YK   DG ++EL E GPRF+LK Y+IKLGTL+T+ AA+ EW L
Sbjct: 225 RHHVYKTENDG-EVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVL 270

Caenorhabditis elegans (taxid: 6239)

>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp4 PE=3 SV=1

 Score =  297 bits (760), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 148/287 (51%), Positives = 203/287 (70%), Gaps = 13/287 (4%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRR  R RR+++Y+++ E ++  + EK+  LRK+L+GNK++  DL+  +  LQ+   ++
Sbjct: 1   MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDS-QLQKDYKYD 59

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           +     A    TET+       DDEY   G  +PK+++TTSR+PSSRL  F KE+RL+ P
Sbjct: 60  ESR---ATQEETETN------LDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIP 110

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NS R+NRGN  +  L+ A RAND+TD +++HEHRGIPD LVI HLPYGPT  F++ +V++
Sbjct: 111 NSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVL 170

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYIS 239
           RHDIP+ GTMSE YPHL+F N  ++LG+RV + L  LFP  PK+ + R+VTFAN DDYIS
Sbjct: 171 RHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYIS 230

Query: 240 FRHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           FRHH Y + G K I L E GPRF++KL+EI LGT+D V+ AD EW L
Sbjct: 231 FRHHIYAKTGPKQIILSEAGPRFEMKLFEITLGTVDMVD-ADVEWKL 276

Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1 SV=1

 Score =  284 bits (726), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 139/296 (46%), Positives = 199/296 (67%), Gaps = 10/296 (3%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQAR RREYLYRK+ E +   +Q+K+  ++++L   K +P +L     SLQ+   ++
Sbjct: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDE-SLQKDFRYD 59

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
                   S+        L   D+    +GI DP+I++TTSRDPS+RL  F KE++L+FP
Sbjct: 60  Q-------SLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFP 112

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           N+ R+NRGNY M  L+ AC+ +  TD +V+HEHRG+P +L I H P+GPTA F++ +V+M
Sbjct: 113 NAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVM 172

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYIS 239
           RHDI + G  SE  PHL+F NF T LG+RV+ ILK+LF   PK+DS+R++TFAN  D+IS
Sbjct: 173 RHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFIS 232

Query: 240 FRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
            R H Y R  + +E+ EVGPRF+++L+E++LGTL+  + AD EW L R  R  N +
Sbjct: 233 VRQHVYVRTREGVEIAEVGPRFEMRLFELRLGTLENKD-ADVEWQLRRFIRTANKK 287

Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=IMP4 PE=3 SV=2

 Score =  280 bits (716), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 145/297 (48%), Positives = 201/297 (67%), Gaps = 19/297 (6%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQAR RREYLYRK+ E ++  +Q+K+D ++++L   K +P ++ +    LQR   ++
Sbjct: 1   MLRRQARERREYLYRKAQELQESQLQQKRDLIKQALAQGKPLPKEVADDT-KLQRDYQYD 59

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYR-WAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
           +   E   SI            DDEY   +GI DPK+++TTSRDPS+RL  F KE++L+F
Sbjct: 60  ESAQE---SI------------DDEYSALSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLF 104

Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
           P S R+NRGNY MK L+ AC+ +  TD +V+HEHRG+P  L I H P+GPTA F++ +V+
Sbjct: 105 PTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVV 164

Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVP-KEDSKRIVTFANHDDYI 238
           +RHDI + G  SE +PHL+F NF T LGQRV+ ILK++FP   K+DS R++TFAN  D+I
Sbjct: 165 LRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKKDSPRVITFANRGDFI 224

Query: 239 SFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
           S R H Y +    +EL EVGPRF++KLYE+ LGTL+  + AD EW L R  R  N +
Sbjct: 225 SVRQHVYVKTRDGVELAEVGPRFEMKLYELTLGTLENKD-ADVEWQLRRFVRTANRK 280

Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1

 Score =  278 bits (710), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 135/297 (45%), Positives = 201/297 (67%), Gaps = 19/297 (6%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           M+RRQAR RREYLYRKSL+ ++    +K+ +L+ +L   K +P D+ +    L++ + ++
Sbjct: 1   MIRRQARERREYLYRKSLQLQEATKIQKRQQLKAALASGKPLPKDVADDE-ELRKTIAYD 59

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYR-WAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
           +       S+  E         DDEY   +GI DPK+++TTSRDPS+RL  F KE++L+F
Sbjct: 60  E-------SVQDEI--------DDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLF 104

Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
           P S R+NRG   +  L+ AC+ +  +D IV+HEHRG+P  + + H P+GPTAYF++ +V+
Sbjct: 105 PTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVV 164

Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVP-KEDSKRIVTFANHDDYI 238
           +RHD+PD G MSE +PHL+F NF T LG+RV+ ILK+LFP   K+DS R++TFAN  D+I
Sbjct: 165 LRHDLPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFI 224

Query: 239 SFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR 295
           S R H Y +  + +EL EVGPRF+++LY+++LGTL+  + AD EW +    R  N +
Sbjct: 225 SVRQHVYVKTREGVELAEVGPRFEMRLYDLRLGTLENKD-ADVEWRMHGFMRTANKK 280

Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
340726760	311	PREDICTED: u3 small nucleolar ribonucleo	0.966	0.916	0.807	1e-139
383851297	311	PREDICTED: U3 small nucleolar ribonucleo	0.966	0.916	0.807	1e-138
322800158	311	hypothetical protein SINV_01837 [Solenop	0.966	0.916	0.794	1e-138
350421740	311	PREDICTED: U3 small nucleolar ribonucleo	0.966	0.916	0.804	1e-137
66514411	311	PREDICTED: u3 small nucleolar ribonucleo	0.966	0.916	0.800	1e-137
380020454	311	PREDICTED: U3 small nucleolar ribonucleo	0.966	0.916	0.793	1e-136
156555275	312	PREDICTED: U3 small nucleolar ribonucleo	0.966	0.913	0.814	1e-136
332029526	312	U3 small nucleolar ribonucleoprotein pro	0.966	0.913	0.786	1e-135
189241108	312	PREDICTED: similar to U3 small nucleolar	0.966	0.913	0.789	1e-135
307190874	311	U3 small nucleolar ribonucleoprotein pro	0.966	0.916	0.779	1e-135

>gi|340726760|ref|XP_003401721.1| PREDICTED: u3 small nucleolar ribonucleoprotein protein IMP4-like [Bombus terrestris]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/286 (80%), Positives = 264/286 (92%), Gaps = 1/286 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRKS+++K ++IQEKK++L++SL+ N  I  DL+  AL++Q++L WE
Sbjct: 1   MLRRQARLRREYLYRKSVQDKLKSIQEKKEKLKRSLEQNIPIHPDLRKDALNIQKQLAWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GPE+AV+IGTE  G   +H+DDEYRWAG+EDPKI+ITTSRDPSSRLKMFVKELRLIFP
Sbjct: 61  DAGPEMAVAIGTEMGGAVGSHEDDEYRWAGVEDPKIVITTSRDPSSRLKMFVKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NSQRMNRGNYEMKQLIHACRANDVTDFI+VHEHRG+P++L+ICHLPYGPTAYFTMSDVIM
Sbjct: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIIVHEHRGVPNSLIICHLPYGPTAYFTMSDVIM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIPD+GTMSEQYPHL+FHNFKT+LG+RVMSILKYLFPVPKEDSKRI+TFANHDDYISF
Sbjct: 181 RHDIPDIGTMSEQYPHLIFHNFKTKLGERVMSILKYLFPVPKEDSKRIITFANHDDYISF 240

Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH YK+  GKDIEL EVGPRFQLKLY+IKLGTLD   AADTEWAL
Sbjct: 241 RHHTYKKIHGKDIELVEVGPRFQLKLYQIKLGTLDAEAAADTEWAL 286

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851297|ref|XP_003701170.1| PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Megachile rotundata]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/286 (80%), Positives = 261/286 (91%), Gaps = 1/286 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRKS+++K + IQEKK++L++SL+ N  I  DL+  AL++Q+KLDWE
Sbjct: 1   MLRRQARLRREYLYRKSVQDKLKNIQEKKEKLKRSLEENVPIHPDLRKDALNIQQKLDWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GPE+AV++GTE  G   +H+DDEYRWAG+EDPKI+ITTSRDPSSRLKMF KELRLIFP
Sbjct: 61  DAGPEMAVAMGTEMGGTLGSHEDDEYRWAGVEDPKIVITTSRDPSSRLKMFAKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NSQRMNRGNYEMKQLIHACRANDVTDFI+VHEHRGIPD+L+ICHLPYGPTAYFTMSDV+M
Sbjct: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIIVHEHRGIPDSLIICHLPYGPTAYFTMSDVVM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHD+PD+GTMSEQYPHL+FHNFKT+LG RVMSILKYLFPVPKEDSKRI+TFANHDDYISF
Sbjct: 181 RHDVPDIGTMSEQYPHLIFHNFKTKLGTRVMSILKYLFPVPKEDSKRIITFANHDDYISF 240

Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH YK+  GKDIEL EVGPRFQLKLYEIKLGTLD   AAD EWAL
Sbjct: 241 RHHTYKKVHGKDIELTEVGPRFQLKLYEIKLGTLDAESAADVEWAL 286

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800158|gb|EFZ21243.1| hypothetical protein SINV_01837 [Solenopsis invicta]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/287 (79%), Positives = 263/287 (91%), Gaps = 2/287 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRKS++EK + IQEKKD+LR+ LD N  I +DL++ AL +QRK++WE
Sbjct: 1   MLRRQARLRREYLYRKSVQEKVKGIQEKKDKLRQCLDENVPIHSDLRSSALHVQRKIEWE 60

Query: 61  DEGPELAVSIGTETSGGGLT-HQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
           D GP++A+++GTE  GG +  H+DDEYRWAG+EDPKI++TTSRDPSSRLKMFVKELRLIF
Sbjct: 61  DAGPQMAIAMGTEMGGGAVANHEDDEYRWAGVEDPKIVVTTSRDPSSRLKMFVKELRLIF 120

Query: 120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
           PNSQRMNRGNYEMKQLIHACRANDVTDFI+VHEHRG+PD LVICHLPYGPTAYFT+S VI
Sbjct: 121 PNSQRMNRGNYEMKQLIHACRANDVTDFIIVHEHRGVPDALVICHLPYGPTAYFTLSGVI 180

Query: 180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYIS 239
           MRHDIP++GTMSEQYPHL+FHNFKT+LG+RVMSILKYLFPVPKEDSKR+++FANHDDYI 
Sbjct: 181 MRHDIPEIGTMSEQYPHLIFHNFKTKLGERVMSILKYLFPVPKEDSKRVISFANHDDYIC 240

Query: 240 FRHHNYKRD-GKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           FRHH YK+  GK+IEL EVGPRFQ+KLYEIKLGTLDT  AADTEWAL
Sbjct: 241 FRHHTYKKTHGKNIELTEVGPRFQMKLYEIKLGTLDTESAADTEWAL 287

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421740|ref|XP_003492942.1| PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Bombus impatiens]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 230/286 (80%), Positives = 263/286 (91%), Gaps = 1/286 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRKS+++K ++IQEKK++L++SL+ N  I  DL+  AL++Q++L WE
Sbjct: 1   MLRRQARLRREYLYRKSIQDKLKSIQEKKEKLKRSLEQNIPIHPDLRKDALNIQKQLAWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GPE+AV+IGTE  G   +H+DDEYRWAG+EDPKI+ITTSRDPSSRLKMFVKELRLIFP
Sbjct: 61  DAGPEMAVAIGTEMGGVVGSHEDDEYRWAGVEDPKIVITTSRDPSSRLKMFVKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NSQRMNRGNYEMKQLIHACRANDVTDFI+VHEHRG+P++L+ICHLPYGPTAYFTMSDVIM
Sbjct: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIIVHEHRGVPNSLIICHLPYGPTAYFTMSDVIM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIPD+GTMSEQYPHL+FHNFKT+LG+RVMSILKYLFPVPKEDSKRI+TFANHDDYISF
Sbjct: 181 RHDIPDIGTMSEQYPHLIFHNFKTKLGERVMSILKYLFPVPKEDSKRIITFANHDDYISF 240

Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH YK+  GK IEL EVGPRFQLKLY+IKLGTLD   AADTEWAL
Sbjct: 241 RHHTYKKIHGKAIELVEVGPRFQLKLYQIKLGTLDAEAAADTEWAL 286

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66514411|ref|XP_395323.2| PREDICTED: u3 small nucleolar ribonucleoprotein protein IMP4-like [Apis mellifera]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/286 (80%), Positives = 262/286 (91%), Gaps = 1/286 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRKS+++K + IQEKK++L++SL+ N  I  DLK  AL++Q++L WE
Sbjct: 1   MLRRQARLRREYLYRKSVQDKLKNIQEKKEKLKRSLEQNIPIHPDLKKDALNIQKQLAWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GPE+A++IGTE  G   +H+DDEYRWAG+EDPKI+ITTSRDPSSRLKMFVKELRLIFP
Sbjct: 61  DAGPEMAIAIGTEMGGTLASHEDDEYRWAGVEDPKIVITTSRDPSSRLKMFVKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NSQRMNRGNYEMKQLIHACRANDVTDFI+VHEHRGIPD+++ICHLPYGPTAYFTMSDVIM
Sbjct: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIIVHEHRGIPDSIIICHLPYGPTAYFTMSDVIM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIP++GTMSEQYPHL+FHNFKT+LG+RVM+ILKYLFPVPKEDSKRI+TFANHDDYISF
Sbjct: 181 RHDIPNIGTMSEQYPHLIFHNFKTKLGERVMNILKYLFPVPKEDSKRIITFANHDDYISF 240

Query: 241 RHHNYKRD-GKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH YK+  GKDIEL EVGPRFQL+LYEIKLGTLD   AAD EWAL
Sbjct: 241 RHHTYKKIYGKDIELSEVGPRFQLRLYEIKLGTLDAEAAADIEWAL 286

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020454|ref|XP_003694098.1| PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Apis florea]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 227/286 (79%), Positives = 262/286 (91%), Gaps = 1/286 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRKS+++K ++IQEKK++L++SL+ N  I  DLK  AL++Q++L WE
Sbjct: 1   MLRRQARLRREYLYRKSVQDKLKSIQEKKEKLKRSLEQNIPIHPDLKKDALNIQKQLAWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GPE+A++IGTE  G   +H+DDEYRWAG+EDPKI+ITTSRDPSSRLKMFVKELRLIFP
Sbjct: 61  DAGPEMAIAIGTEMGGTLGSHEDDEYRWAGVEDPKIVITTSRDPSSRLKMFVKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NSQRMNRGNYEMKQLIHACRANDVTDFI+VHEHRG+PD+++ICHLPYGPTAYFTMSDVIM
Sbjct: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIIVHEHRGVPDSIIICHLPYGPTAYFTMSDVIM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIP++GTMSEQYPHL+FHNFKT+LG+RVM+ILKYLFPVPKEDSKRI+TFANHDDYISF
Sbjct: 181 RHDIPNIGTMSEQYPHLIFHNFKTKLGERVMNILKYLFPVPKEDSKRIITFANHDDYISF 240

Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH  K+  GKDIEL EVGPRFQL+LYEIKLGTLD   AAD EWAL
Sbjct: 241 RHHTCKKIHGKDIELSEVGPRFQLRLYEIKLGTLDAEAAADIEWAL 286

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555275|ref|XP_001603335.1| PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Nasonia vitripennis]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/286 (81%), Positives = 261/286 (91%), Gaps = 1/286 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRK++++KQ+ IQEKKD++++SL+ N  I  DL+  AL LQRK +WE
Sbjct: 1   MLRRQARLRREYLYRKNIQDKQKTIQEKKDKIKRSLEENIPIHPDLRKDALHLQRKAEWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GPELAV+ GTE  G   T++DDEYRWAG+EDPKI+ITTSRDPSSRLKMFVKELRLIFP
Sbjct: 61  DAGPELAVAQGTEMGGACGTNEDDEYRWAGVEDPKIVITTSRDPSSRLKMFVKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NSQRMNRGNYEMKQLIHACRANDVTDFI+VHEHRG+PD+LVICHLPYGPTAYFTMSDVIM
Sbjct: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIIVHEHRGVPDSLVICHLPYGPTAYFTMSDVIM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIPD+GTMSEQYPHLVFHNFKT++G R MSILKYLFPVPKEDSKR++TFANHDDYISF
Sbjct: 181 RHDIPDIGTMSEQYPHLVFHNFKTKIGLRAMSILKYLFPVPKEDSKRVITFANHDDYISF 240

Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH YK+ +G+DIEL EVGPRFQLKLYEIKLGTLD   AADTEWAL
Sbjct: 241 RHHTYKKVNGRDIELSEVGPRFQLKLYEIKLGTLDAAAAADTEWAL 286

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029526|gb|EGI69415.1| U3 small nucleolar ribonucleoprotein protein IMP4 [Acromyrmex echinatior]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/286 (78%), Positives = 258/286 (90%), Gaps = 1/286 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRKS+++K + IQEKKD+L+ SL+ N  I  DL+  AL +QRK++WE
Sbjct: 1   MLRRQARLRREYLYRKSVQDKVKGIQEKKDKLKHSLEENIPIHPDLRKSALHVQRKIEWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GPE+AV++GTE  G  + H+DDEYRWAG+E+PKI+ITTSRDPSSRLKMFVKELRLIFP
Sbjct: 61  DAGPEMAVAMGTEMGGTVVNHEDDEYRWAGVENPKIVITTSRDPSSRLKMFVKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NSQRMNRGNYEMKQLIHACRANDVTDFI+VHEHRG+PD LVICHLPYGPTAYFT+S V+M
Sbjct: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIIVHEHRGVPDALVICHLPYGPTAYFTLSGVVM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIPD+GTMSEQYPHL+FHNFKT+LG RV +ILKYLFPVPKEDSKR+++FANHDDYI F
Sbjct: 181 RHDIPDIGTMSEQYPHLIFHNFKTKLGVRVTNILKYLFPVPKEDSKRVISFANHDDYICF 240

Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH YK+  GK+IEL EVGPRFQ+KLYEIKLGTLDT  AADTEWAL
Sbjct: 241 RHHTYKKTQGKNIELTEVGPRFQMKLYEIKLGTLDTESAADTEWAL 286

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241108|ref|XP_972242.2| PREDICTED: similar to U3 small nucleolar ribonucleoprotein component [Tribolium castaneum] gi|270013895|gb|EFA10343.1| hypothetical protein TcasGA2_TC012561 [Tribolium castaneum]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/285 (78%), Positives = 257/285 (90%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRK++E+KQ++IQ+KKDR+++SL+ N  I  DL+ +AL   +KL+WE
Sbjct: 1   MLRRQARLRREYLYRKTVEDKQKSIQDKKDRIKRSLEENIPIHGDLQKKALHYSKKLEWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GP  AV +G E+ G   +  DDEYR+AG+EDPKI+ITTSRDPSSRLKMFVKELRLIFP
Sbjct: 61  DAGPAAAVQLGGESGGALASSIDDEYRYAGVEDPKIVITTSRDPSSRLKMFVKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           N+QRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG+PD+LV+CHLPYGPTAYFTMSDV+M
Sbjct: 121 NAQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGVPDSLVVCHLPYGPTAYFTMSDVVM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIPDLGTMSEQYPHL+FHNFKT+LG+RV +ILKYLFPVPKEDSKRI+TFANHDDYISF
Sbjct: 181 RHDIPDLGTMSEQYPHLIFHNFKTKLGERVTNILKYLFPVPKEDSKRIITFANHDDYISF 240

Query: 241 RHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHHNYK   K IEL EVGPRFQL+LYEIKLGTLD  +AADTEWAL
Sbjct: 241 RHHNYKTVDKQIELSEVGPRFQLRLYEIKLGTLDNADAADTEWAL 285

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190874|gb|EFN74711.1| U3 small nucleolar ribonucleoprotein protein IMP4 [Camponotus floridanus]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 223/286 (77%), Positives = 257/286 (89%), Gaps = 1/286 (0%)

Query: 1   MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
           MLRRQARLRREYLYRKS+++K + IQEKKD+L++SL+ N  I  DL+  AL +QRK++WE
Sbjct: 1   MLRRQARLRREYLYRKSVQDKVKGIQEKKDKLKRSLEENIPIHPDLRKNALHVQRKIEWE 60

Query: 61  DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
           D GP++AV++GTE  G    H+DDEYRWAG+EDPKI+ITTSRDPSSRLKMF KELRLIFP
Sbjct: 61  DAGPQMAVAMGTEMGGSVANHEDDEYRWAGVEDPKIVITTSRDPSSRLKMFAKELRLIFP 120

Query: 121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
           NSQRMNRGNYEMKQL+HACRANDVTDFI+VHEHRG+PDTLV+CHLPYGPTAYFT+S VIM
Sbjct: 121 NSQRMNRGNYEMKQLVHACRANDVTDFIIVHEHRGVPDTLVVCHLPYGPTAYFTLSGVIM 180

Query: 181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
           RHDIPD+GTMSEQYPHL+FHNFKT+LG RVM+ILKYLFPVPKEDSKR+++FANHDDYI F
Sbjct: 181 RHDIPDIGTMSEQYPHLIFHNFKTKLGARVMNILKYLFPVPKEDSKRVISFANHDDYICF 240

Query: 241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
           RHH YK+   KDIE+ EVGPRFQ+KLYEIKLGTLDT   ADTEWAL
Sbjct: 241 RHHTYKKVHRKDIEMTEVGPRFQMKLYEIKLGTLDTESTADTEWAL 286

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
ZFIN|ZDB-GENE-040718-474	291	imp4 "IMP4, U3 small nucleolar	0.922	0.934	0.633	1.6e-102
UNIPROTKB|Q96G21	291	IMP4 "U3 small nucleolar ribon	0.922	0.934	0.633	5.8e-98
MGI|MGI:106572	291	Imp4 "IMP4, U3 small nucleolar	0.922	0.934	0.630	5.8e-98
RGD|1308463	291	Imp4 "IMP4, U3 small nucleolar	0.922	0.934	0.630	5.8e-98
UNIPROTKB|Q0VD01	291	IMP4 "U3 small nucleolar ribon	0.922	0.934	0.619	1.4e-96
FB|FBgn0039274	298	CG11920 [Drosophila melanogast	0.915	0.906	0.593	1.4e-89
WB|WBGene00014083	292	ZK795.3 [Caenorhabditis elegan	0.908	0.917	0.571	2e-88
DICTYBASE|DDB_G0302418	286	imp4 "U3 small nucleolar ribon	0.911	0.940	0.564	8.5e-81
TAIR|locus:2026689	294	IMP4 "AT1G63780" [Arabidopsis	0.925	0.928	0.525	5.5e-77
POMBASE|SPAC19A8.07c	289	SPAC19A8.07c "U3 snoRNP-associ	0.928	0.948	0.515	5.7e-75

ZFIN|ZDB-GENE-040718-474 imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 180/284 (63%), Positives = 236/284 (83%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             MLRR+ RLR+EYLYRK+ E++ R I+EKK +L+ +LD N+ +PT+++ +AL +Q+ L+++
Sbjct:     1 MLRREVRLRKEYLYRKAQEDRLRTIEEKKQKLKSALDENRLLPTEVRKEALEVQKLLEFD 60

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
             DEG E           G  +H DDEY+WAG+EDPKIM+TTSRDPSSRLKMF KE++L+FP
Sbjct:    61 DEGGE-----------GVSSHMDDEYKWAGVEDPKIMVTTSRDPSSRLKMFAKEMKLMFP 109

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
              +QRMNRGN+E+K L+HAC++N+VTD ++VHE RG PD LV+CHLP+GPTAYFTM +V+M
Sbjct:   110 GAQRMNRGNHEVKTLVHACKSNNVTDLVIVHETRGQPDGLVVCHLPFGPTAYFTMYNVVM 169

Query:   181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
             RHD+PD+GTMSE YPHL+FHNF ++LG+RV +ILKYLFPVPKEDS+R++TFAN DDYISF
Sbjct:   170 RHDVPDIGTMSEAYPHLIFHNFTSRLGRRVSNILKYLFPVPKEDSRRVITFANTDDYISF 229

Query:   241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
             RHH YK+ D K++EL EVGPRF++KLY IKLGTL+    AD EW
Sbjct:   230 RHHTYKKTDHKNVELTEVGPRFEMKLYMIKLGTLENESTADVEW 273

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q96G21 IMP4 "U3 small nucleolar ribonucleoprotein protein IMP4" [Homo sapiens (taxid:9606)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 180/284 (63%), Positives = 228/284 (80%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             MLRR+ARLRREYLYRK+ EE QR+ QE+K+RLR++L+ N+ IPT+L+ +AL+LQ  L+++
Sbjct:     1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
             D G E           G  +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP
Sbjct:    61 DAGGE-----------GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFP 109

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
              +QRMNRG +E+  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+M
Sbjct:   110 GAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVM 169

Query:   181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
             RHDIPDLGTMSE  PHL+ H F ++LG+RV  IL+YLFPVPK+DS R++TFAN DDYISF
Sbjct:   170 RHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISF 229

Query:   241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
             RHH YK+ D +++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct:   230 RHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:106572 Imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 179/284 (63%), Positives = 229/284 (80%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             MLRR+ARLRREYLYRK+ EE QR++QEKK+R++++L+ N+ IPT+L+ +AL+LQ  L+++
Sbjct:     1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
             D G E           G  +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP
Sbjct:    61 DAGGE-----------GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFP 109

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
              +QRMNRG +E+  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+M
Sbjct:   110 GAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVM 169

Query:   181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
             RHDIPDLGTMSE  PHL+ H F ++LG+RV  IL+YLFPVPK+DS R++TFAN DDYISF
Sbjct:   170 RHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISF 229

Query:   241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
             RHH YK+ D +++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct:   230 RHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

GO:0003723 "RNA binding" evidence=ISA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISA

GO:0006364 "rRNA processing" evidence=TAS

GO:0030519 "snoRNP binding" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1308463 Imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 179/284 (63%), Positives = 229/284 (80%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             MLRR+ARLRREYLYRK+ EE QR++QEKK+R++++L+ N+ IPT+L+ +AL+LQ  L+++
Sbjct:     1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
             D G E           G  +H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP
Sbjct:    61 DAGGE-----------GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFP 109

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
              +QRMNRG +E+  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+M
Sbjct:   110 GAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVM 169

Query:   181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
             RHDIPDLGTMSE  PHL+ H F ++LG+RV  IL+YLFPVPK+DS R++TFAN DDYISF
Sbjct:   170 RHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISF 229

Query:   241 RHHNYKR-DGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
             RHH YK+ D +++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct:   230 RHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q0VD01 IMP4 "U3 small nucleolar ribonucleoprotein protein IMP4" [Bos taurus (taxid:9913)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 176/284 (61%), Positives = 225/284 (79%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             MLRR+ARLRREYLYRK+ EE +R  QE+KD++R++L+ N+ IPT+L+ +AL+LQ  L+++
Sbjct:     1 MLRREARLRREYLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFD 60

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
             D G E           G   H DDEYRWAG+EDPK+MITTSRDPSSRLKMF KEL+L+FP
Sbjct:    61 DAGGE-----------GVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFP 109

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
              +QRMNRG +E+  L+ AC+AN VTD +VVHEHRG P  L++ HLP+GPTAYFT+ +V+M
Sbjct:   110 GAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVM 169

Query:   181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
             RHDIPDLGT SE  PHL+ H F ++LG+RV  IL+YLFPVPK+DS+R++TFAN DDYISF
Sbjct:   170 RHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISF 229

Query:   241 RHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
             RHH YK+   +++EL EVGPRF+LKLY I+LGTL+    AD EW
Sbjct:   230 RHHVYKKTNHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEW 273

GO:0005730 "nucleolus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

FB|FBgn0039274 CG11920 [Drosophila melanogaster (taxid:7227)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 168/283 (59%), Positives = 222/283 (78%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             MLR+QAR RREYLY K+L E+ ++ Q+ ++ + KS++ NK I +    ++L+  + L + 
Sbjct:     1 MLRKQARQRREYLYNKALTERLKSKQKIQETVVKSINENKAIGSKNVKKSLTAYKSLKYA 60

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
             DEG      +   T        +DEY +AG EDPKIM+TTS +PSSRLKMF+KELRLI P
Sbjct:    61 DEG------VDDRTV-------NDEYHYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIP 107

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
             N+Q+MNRGNY++  L+HACRAN+VTDF++VHEHRGI D+LV+CHLPYGPTA+F +SDV+M
Sbjct:   108 NAQQMNRGNYQLTTLMHACRANNVTDFLIVHEHRGILDSLVVCHLPYGPTAFFNISDVVM 167

Query:   181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
             RHDIPD+G MSEQ PHL+F+NFKT +G R + ILK+LFPVPKE+S+R+++F NH+D I F
Sbjct:   168 RHDIPDIGHMSEQKPHLIFNNFKTPIGLRTVKILKHLFPVPKENSQRVMSFLNHNDSIIF 227

Query:   241 RHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
             RHH YK   K++EL EVGPRF LKLY+IKLGTL+ ++AADTEW
Sbjct:   228 RHHQYKYVNKELELTEVGPRFSLKLYQIKLGTLENIKAADTEW 270

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

WB|WBGene00014083 ZK795.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 164/287 (57%), Positives = 221/287 (77%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             M+RR+ RLRRE+++RKSLEEKQ++++EK++++R +L+ N KI  +L+  A+ L +  DW 
Sbjct:     1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDW- 59

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
                            GG     D EYRWAG +DPKI+ITTSRDPSSRLKMF KE++LIFP
Sbjct:    60 ---------------GGQQYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFP 104

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
             N+QR+NRG+Y++KQ++ A +A D TD I+  E RG PD +++CHLP+GPTA+F+M++V+M
Sbjct:   105 NAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVM 164

Query:   181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF 240
             RHDIP+ GTMSEQYPHL+F N  ++LG R  +ILK+LFPVPK DSKRI+TF+N +DYISF
Sbjct:   165 RHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISF 224

Query:   241 RHHNYK--RDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
             RHH YK   DG ++EL E GPRF+LK Y+IKLGTL+T+ AA+ EW L
Sbjct:   225 RHHVYKTENDG-EVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVL 270

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

DICTYBASE|DDB_G0302418 imp4 "U3 small nucleolar ribonucleoprotein protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 161/285 (56%), Positives = 209/285 (73%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             MLRR ARLR+EYLYRK+LE   +   EKK R++K+LD  K IPT+L          +D+E
Sbjct:     1 MLRRNARLRQEYLYRKNLEGADKEDYEKKRRIKKALDEGKPIPTEL----------VDFE 50

Query:    61 -DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIF 119
                  E+ +    +  G      DDEY  AGI+DPK+++TTSR+PSSRL  F KELR++F
Sbjct:    51 FKHRDEMKLD---KLDGNRPKSIDDEYARAGIQDPKVLVTTSREPSSRLIQFTKELRMLF 107

Query:   120 PNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVI 179
             PNSQ+MNRG + +K+L+ ACRANDVTD ++ HEHRG P  LVI HLPYGPTAYF + + +
Sbjct:   108 PNSQKMNRGAHVVKELVDACRANDVTDLVIAHEHRGEPVGLVISHLPYGPTAYFEIKNCV 167

Query:   180 MRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYIS 239
             M HDI +    S  +PHL+FHNF T LG+R  +ILKYLFPVPK+DS+R+VTF+N +D+IS
Sbjct:   168 MIHDIDEATPPSLAFPHLIFHNFTTPLGERTENILKYLFPVPKDDSRRVVTFSNDNDFIS 227

Query:   240 FRHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEW 283
             FRHH Y++DG K++ LKE+GPRF+LKLY+I+LGTLD  EA D EW
Sbjct:   228 FRHHIYEKDGYKNVILKEIGPRFELKLYKIQLGTLDQDEA-DLEW 271

GO:0034457 "Mpp10 complex" evidence=ISS

GO:0030515 "snoRNA binding" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

TAIR|locus:2026689 IMP4 "AT1G63780" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 153/291 (52%), Positives = 210/291 (72%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             M RR  RL++EY+YRKSLE  +R + E+K  +R++L   K IPT+L+N    L++++D E
Sbjct:     1 MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLE 60

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
             D+   +  S           H DDEY  A   DPKI++TTSR+PS+ L  F KEL+ +FP
Sbjct:    61 DQNTAVPRS-----------HIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFP 109

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
             NSQR+NRG+  + ++I   R++D TD I+VHEHRG+PD L+I HLP+GPTAYF + +V+ 
Sbjct:   110 NSQRINRGSQVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVT 169

Query:   181 RHDIPD---LGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDY 237
             RHDI D   +G M EQYPHL+F+NF TQ+GQRV +ILK++FP PK D+KRIVTF+N  DY
Sbjct:   170 RHDISDKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDY 229

Query:   238 ISFRHHNY-KRDG--KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
             ISFR+H Y K +G  K IELKE+GPRF+L+LY++KLGT++  EA + EW +
Sbjct:   230 ISFRNHVYDKGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEA-EIEWVI 279

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005730 "nucleolus" evidence=TAS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=TAS

GO:0006364 "rRNA processing" evidence=RCA;TAS

GO:0015030 "Cajal body" evidence=TAS

GO:0016363 "nuclear matrix" evidence=IDA

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

POMBASE|SPAC19A8.07c SPAC19A8.07c "U3 snoRNP-associated protein Imp4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 148/287 (51%), Positives = 203/287 (70%)

Query:     1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWE 60
             MLRR  R RR+++Y+++ E ++  + EK+  LRK+L+GNK++  DL+  +  LQ+   ++
Sbjct:     1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDS-QLQKDYKYD 59

Query:    61 DEGPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFP 120
             +     A    TET+       DDEY   G  +PK+++TTSR+PSSRL  F KE+RL+ P
Sbjct:    60 ESR---ATQEETETN------LDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIP 110

Query:   121 NSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM 180
             NS R+NRGN  +  L+ A RAND+TD +++HEHRGIPD LVI HLPYGPT  F++ +V++
Sbjct:   111 NSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVL 170

Query:   181 RHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYIS 239
             RHDIP+ GTMSE YPHL+F N  ++LG+RV + L  LFP  PK+ + R+VTFAN DDYIS
Sbjct:   171 RHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYIS 230

Query:   240 FRHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
             FRHH Y + G K I L E GPRF++KL+EI LGT+D V+A D EW L
Sbjct:   231 FRHHIYAKTGPKQIILSEAGPRFEMKLFEITLGTVDMVDA-DVEWKL 276

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VD01	IMP4_BOVIN	No assigned EC number	0.6080	0.8847	0.8969	yes	N/A
P53941	IMP4_YEAST	No assigned EC number	0.4695	0.9694	0.9862	yes	N/A
Q96G21	IMP4_HUMAN	No assigned EC number	0.6227	0.8847	0.8969	yes	N/A
Q6C804	IMP4_YARLI	No assigned EC number	0.4545	0.9423	0.9823	yes	N/A
Q8VHZ7	IMP4_MOUSE	No assigned EC number	0.6190	0.8847	0.8969	yes	N/A
Q5R947	IMP4_PONAB	No assigned EC number	0.6227	0.8847	0.8969	yes	N/A
Q6BYD9	IMP4_DEBHA	No assigned EC number	0.4579	0.9423	0.9788	yes	N/A
O13823	IMP4_SCHPO	No assigned EC number	0.5156	0.9288	0.9480	yes	N/A
O62518	YHPK_CAEEL	No assigned EC number	0.5714	0.9084	0.9178	yes	N/A
Q755T8	IMP4_ASHGO	No assigned EC number	0.4882	0.9423	0.9823	yes	N/A
Q6FNN7	IMP4_CANGA	No assigned EC number	0.4713	0.9593	0.9826	yes	N/A
Q5PQR5	IMP4_RAT	No assigned EC number	0.6190	0.8847	0.8969	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	295
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	6e-58
pfam04427	176	pfam04427, Brix, Brix domain	2e-56
COG2136	191	COG2136, IMP4, Predicted exosome subunit/U3 small	3e-49
PRK00933	165	PRK00933, PRK00933, ribosomal biogenesis protein;	1e-05
COG5154	283	COG5154, BRX1, RNA-binding protein required for 60	0.003

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  183 bits (466), Expect = 6e-58
 Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 13/180 (7%)

Query: 97  MITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEH--R 154
           +ITTSR PS R +   K+LR +FP S ++NRG  ++ +L+        TD +VV E   +
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSK 60

Query: 155 GIPDTLVICHLPYGPTAYFTMSDVIMRHDIPD---LGTMSEQYPHLVFHNFKTQLGQRVM 211
           G P  L I  LP GPT  F + +V +R ++        ++   P L+F+NF T+LG+ + 
Sbjct: 61  GRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIK 120

Query: 212 SILKYLFPVPKED------SKRIVTFANHDDYISFRHHNYKRD--GKDIELKEVGPRFQL 263
            + + LFP P E        +R+VTF+N DDYI FRH+  K       +EL+E+GPRF L
Sbjct: 121 ELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRIKFGKKKPRVELQEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  179 bits (456), Expect = 2e-56
 Identities = 72/180 (40%), Positives = 101/180 (56%), Gaps = 13/180 (7%)

Query: 98  ITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIP 157
           ITTSR PS RL+   K+LRL+FPN++++NRG  ++K L+        T  +V  EH+  P
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLFPNAKKLNRGKKKLKDLLEFAGEKGDTSLLVFGEHKK-P 59

Query: 158 DTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS-EQYPHLVFHNFKTQ--LGQRVMSIL 214
             L I  LP GPT  F +S+V +  DI   G  +    P LVF+ F       + +  +L
Sbjct: 60  LNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKGSRPLLVFNGFFFTRLGLKLIKELL 119

Query: 215 KYLFPVP------KEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEI 268
           + LFP P       +   R++TF+N  D I FRH+ YK   K +EL+E+GPRF LKL  I
Sbjct: 120 QDLFPGPNVHKIPLKGGDRVITFSNQRDTIFFRHYRYK---KKVELQEIGPRFTLKLRRI 176

Length = 176

>gnl|CDD|225047 COG2136, IMP4, Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

 Score =  161 bits (410), Expect = 3e-49
 Identities = 67/190 (35%), Positives = 96/190 (50%), Gaps = 8/190 (4%)

Query: 93  DPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHE 152
            PK+++TTSR PS R + F K+L  + PN+  + RG   + +L     A   TD ++V E
Sbjct: 1   MPKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGE 60

Query: 153 HRGIPDTLVICHL-PYGPTAYFTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQLG-QR 209
            RG P  L    L P G T  F +S V +R +IP LG       P L+F+NF T LG  +
Sbjct: 61  RRGNPARLTFYDLEPEGLTFSFKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLK 120

Query: 210 VMSILKYLFPV-----PKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLK 264
           V      L  V     P  + + + T AN  D+ S R H    +   I L+EVGPR  L+
Sbjct: 121 VAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHRRVFEEDGIGLEEVGPRLTLR 180

Query: 265 LYEIKLGTLD 274
           L+ ++ G  +
Sbjct: 181 LWRMEDGRGE 190

Length = 191

>gnl|CDD|234867 PRK00933, PRK00933, ribosomal biogenesis protein; Validated

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 98  ITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIP 157
           ITTSR PS R +  VK+L     N + +NRG   +++L+  C A      +++ E++G P
Sbjct: 3   ITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEAR---YLLIIGEYKGNP 58

Query: 158 DTLVI 162
             L  
Sbjct: 59  GALKF 63

Length = 165

>gnl|CDD|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 43/195 (22%), Positives = 88/195 (45%), Gaps = 27/195 (13%)

Query: 95  KIMITTSRDPSSRLKMFVKELRLIFPNSQR-----MNRGNYEMKQLIHACRANDVTDFIV 149
             +I +SR  S R++  +K+L  + P+S++     M +   ++ +L      N++  F  
Sbjct: 32  TSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFF-- 89

Query: 150 VHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLG----TMSEQYPHLVF-HNFKT 204
               +     L+   +P GPT  F M ++   H + +L     ++    P L F   F+ 
Sbjct: 90  -ESRKRSDLYLMGARIPNGPTVKFRMHNL---HTMDELNFTGNSLKGSRPVLSFDKEFED 145

Query: 205 -QLGQRVMSILKYLFPVPKEDSK------RIVTFANHDDYISFRHH----NYKRDGKDIE 253
               +    +L+++F +PK   +      +++ F   D  I  R +      +   KD++
Sbjct: 146 IPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRENEDKSKDVK 205

Query: 254 LKEVGPRFQLKLYEI 268
           L+E+GPRF + + +I
Sbjct: 206 LEEIGPRFVMTVIKI 220

Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
KOG2781|consensus	290		100.0
KOG2780|consensus	302		100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
KOG2971|consensus	299		100.0
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	100.0
KOG2963|consensus	405		100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
PRK03972	208	ribosomal biogenesis protein; Validated	99.97
PRK00933	165	ribosomal biogenesis protein; Validated	99.49
KOG3031|consensus	307		99.47
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	98.14
PRK03972	208	ribosomal biogenesis protein; Validated	95.34

>KOG2781|consensus

Probab=100.00  E-value=6e-100  Score=681.51  Aligned_cols=283  Identities=66%  Similarity=1.114  Sum_probs=275.7

Q ss_pred             CchhhHhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhcCCCCCCcchhhhHHHHHhhccccCCCCccccccccCCCCCCCC
Q psy16424          1 MLRRQARLRREYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLT   80 (295)
Q Consensus         1 m~r~~~r~rre~l~~k~~e~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (295)
                      |+||++|+||||||+|++|+++++.+|+|++|++||++|++||++|++++..|.+.+.|+|..++           +...
T Consensus         1 MlRR~~R~RREylyrK~~E~~~k~~~ekk~~lr~ALe~nk~ip~elrkda~~l~d~~~~ed~~~~-----------~~~~   69 (290)
T KOG2781|consen    1 MLRRQARERREYLYRKALEEQDKSLQEKKRRLREALEENKKIPKELRKDALLLKDEIYYEDEGGE-----------ADDS   69 (290)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHhHHHhhhhhhccccccc-----------cccc
Confidence            99999999999999999999999999999999999999999999999999999999999986654           5668


Q ss_pred             CcccHHhhcCCCCCeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeE
Q psy16424         81 HQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTL  160 (295)
Q Consensus        81 ~~ddey~~~~~~~PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L  160 (295)
                      ++||||+|||..+|||||||||+||+++.+|+|+|+.+|||++++|||++.+.+++++|..+|+|++||||||+|.|++|
T Consensus        70 ~vddEy~~ag~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL  149 (290)
T KOG2781|consen   70 HVDDEYRWAGEEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGL  149 (290)
T ss_pred             cccHHHHhccCCCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEEEceeEeccccCCCCCCCCCCcEEEeeCCCCchhhHHHHHHHhcCCCCCCCCCeEEEEeecCCeEEE
Q psy16424        161 VICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISF  240 (295)
Q Consensus       161 ~I~~lP~GPT~~F~I~nv~l~~di~~~g~~~~~~P~LIfnnF~t~lg~~i~~il~~LFp~p~~~~rRVv~F~n~~d~I~F  240 (295)
                      .|||||+|||++|+|+||+++|||++.|++++++||||||||+|++|++++++|++|||+|+.+++|||||.|++|+|+|
T Consensus       150 ~vshlPfGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP~pk~ds~Rvvtf~N~~DyIsF  229 (290)
T KOG2781|consen  150 VVSHLPFGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFPVPKDDSKRVVTFANRNDYISF  229 (290)
T ss_pred             EEEecCCCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCCCCcCCcccEEEEecCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeeecC-CceeEEEeccceeEEEEEEecCcCCCCCCcceeEEecCceecccCC
Q psy16424        241 RHHNYKRDG-KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRILNSR  295 (295)
Q Consensus       241 RHy~y~~~~-~~v~L~EIGPRf~LkL~kI~~Gt~~~~~~g~~ew~~~~~~~~~~~~  295 (295)
                      |||+|...+ +.|.|+|+||||+|+||.|.+||++..+ ||+||+++|||||++.|
T Consensus       230 Rhhvy~~~~~k~vel~evGPRfelklyeIrlGTlE~~~-ad~EW~~rpY~nTa~kR  284 (290)
T KOG2781|consen  230 RHHVYKKTDGKEVELTEVGPRFELKLYEIRLGTLEIKD-ADVEWVLRPYMNTARKR  284 (290)
T ss_pred             EEEEEecCCCceEEEeeccccceeeeeeeeecceeccc-cceeEEecchhcchhhh
Confidence            999999885 8999999999999999999999999887 99999999999999764

>KOG2780|consensus

Probab=100.00  E-value=9.8e-66  Score=465.80  Aligned_cols=246  Identities=35%  Similarity=0.599  Sum_probs=230.8

Q ss_pred             HhhcCCCCCCcchhhhHHHHHhhccccCCCCccccccccCCCCCCCCCcccHHh--hcCCCCCeEEEEeCCCCCHhHHHH
Q psy16424         34 KSLDGNKKIPTDLKNQALSLQRKLDWEDEGPELAVSIGTETSGGGLTHQDDEYR--WAGIEDPKIMITTSRDPSSRLKMF  111 (295)
Q Consensus        34 ~~l~~~~~~p~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ddey~--~~~~~~PKvLITtSr~pS~rl~~f  111 (295)
                      .+|++.. +|+.+   ++++++.++||+|.++      ++|||.+.+..||||+  +.....|||||||+.+|+.++..|
T Consensus        45 ~el~~~~-~~~~v---p~TIe~~R~yDeT~v~------~~deEl~~d~~~deF~~~~~~~~spKvlITt~~~~~~~t~~~  114 (302)
T KOG2780|consen   45 PELGELR-PQKNV---PKTIESTRVYDETIVE------EEDEELQADLADDEFSPYFRREFSPKVLITTSKNPKRTTYKF  114 (302)
T ss_pred             hhhhhcc-CccCC---cchhhhhhhccccccC------CCcHHHhhhhhhhhhHHHHhcccCccEEEEcCCCCcccHHHH
Confidence            4566554 35555   4578999999999988      7899999999999999  456667999999999999999999


Q ss_pred             HHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEEEceeEeccccCCCCCCC
Q psy16424        112 VKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMS  191 (295)
Q Consensus       112 ~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~I~nv~l~~di~~~g~~~  191 (295)
                      |.+|..|+|||....|++..++.++++|...++||++||+|+++.|++|.|+|+|+|||++|.++||++.+||+..|..+
T Consensus       115 ~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GPT~~Fkls~~~~~kdi~k~g~~t  194 (302)
T KOG2780|consen  115 ASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGPTAYFKLSNVVLTKDIKKHGRPT  194 (302)
T ss_pred             HHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCCceEEEeecccchhhhhhcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeeCCCCchhhHHHHHHHhcCCC-CCCCCCeEEEEeecCCeEEEEEeeeeecC--CceeEEEeccceeEEEEEE
Q psy16424        192 EQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKRIVTFANHDDYISFRHHNYKRDG--KDIELKEVGPRFQLKLYEI  268 (295)
Q Consensus       192 ~~~P~LIfnnF~t~lg~~i~~il~~LFp~-p~~~~rRVv~F~n~~d~I~FRHy~y~~~~--~~v~L~EIGPRf~LkL~kI  268 (295)
                      +|.|+||+|||+|++|+.|+++|++|||. |++.+|||++||||+|+||||||+|.|..  ++|.|+|+||||||+|.++
T Consensus       195 ~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~IfFRhhRY~Fkee~~kvglqElGPrfTLrL~~l  274 (302)
T KOG2780|consen  195 SHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIFFRHHRYEFKEEEIKVGLQELGPRFTLRLRRL  274 (302)
T ss_pred             cccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEEEEEEEEeecccccccchhhcCCceeeeehhh
Confidence            99999999999999999999999999998 77899999999999999999999999984  7899999999999999999


Q ss_pred             ecCcCCCCCCcceeEEecCceec
Q psy16424        269 KLGTLDTVEAADTEWALFRMGRI  291 (295)
Q Consensus       269 ~~Gt~~~~~~g~~ew~~~~~~~~  291 (295)
                      +.|+|+.+. |+++|+..+ |.|
T Consensus       275 q~G~fd~K~-ge~~~~~~~-~~t  295 (302)
T KOG2780|consen  275 QKGTFDEKE-GEFEWVHKK-MET  295 (302)
T ss_pred             hhccccccc-eeeeeeecc-ccc
Confidence            999999998 999999999 877

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=1.1e-42  Score=305.50  Aligned_cols=170  Identities=38%  Similarity=0.669  Sum_probs=80.8

Q ss_pred             EEeCCCCCHhHHHHHHHHHhcC-CCcEeeccccc-hHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEEE
Q psy16424         98 ITTSRDPSSRLKMFVKELRLIF-PNSQRMNRGNY-EMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTM  175 (295)
Q Consensus        98 ITtSr~pS~rl~~f~kdLr~l~-Pns~~~~Rg~~-~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~I  175 (295)
                      ||||++||+++++|++||+.++ ||+.+++|++. .+++++++|..++|+++++|++++++|.+|||+++|+|||++|+|
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I   80 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI   80 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence            7999999999999999999999 99999999988 999999999999999999999999999999999999999999999


Q ss_pred             ceeEeccccCCCCC-CCCCCcEEEeeCCCCch---hhHHHHHHHhcCCCCC------CCCCeEEEEeecCCe-EEEEEee
Q psy16424        176 SDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQL---GQRVMSILKYLFPVPK------EDSKRIVTFANHDDY-ISFRHHN  244 (295)
Q Consensus       176 ~nv~l~~di~~~g~-~~~~~P~LIfnnF~t~l---g~~i~~il~~LFp~p~------~~~rRVv~F~n~~d~-I~FRHy~  244 (295)
                      .||++++|++.... ..+++|+|||+||.++.   +++++++|++|||.+.      ..++||++|++++|. |||||| 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y-  159 (191)
T PF04427_consen   81 ENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY-  159 (191)
T ss_dssp             EEEE-HHHHT-------S---EEEEE------------------------------------------------------
T ss_pred             EeEEEhhHhcccccCCCCCCeEEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            99999999997643 34778999999998766   8999999999999863      468999999999998 999999 


Q ss_pred             eeecC--------CceeEEEeccceeEEEEEE
Q psy16424        245 YKRDG--------KDIELKEVGPRFQLKLYEI  268 (295)
Q Consensus       245 y~~~~--------~~v~L~EIGPRf~LkL~kI  268 (295)
                      +...+        ..|+|+||||||+|+|++|
T Consensus       160 i~~~~~~~~~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  160 IFKSGSKNPKKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             --------------------------------
T ss_pred             ccccccccccccccccccccccccccccccCC
Confidence            53221        2489999999999999987

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>smart00879 Brix Brix domain

Probab=100.00  E-value=1.2e-38  Score=276.04  Aligned_cols=167  Identities=42%  Similarity=0.743  Sum_probs=151.8

Q ss_pred             EEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEee--cCCCCeEEEEeCCCCceEEEE
Q psy16424         97 MITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEH--RGIPDTLVICHLPYGPTAYFT  174 (295)
Q Consensus        97 LITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~--rg~p~~L~I~~lP~GPT~~F~  174 (295)
                      |||||++||+++++|++||+.++|++.+++|+++.+++++++|...+.++.+++.|.  +|+|.+|||+++|+|||++|.
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~   80 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK   80 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence            689999999999999999999999999999999999999999999866666666666  899999999999999999999


Q ss_pred             EceeEeccccCC--CCCC-CCCCcEEEeeCCCCchhhHHHHHHHhcCCCCCC------CCCeEEEEeecCCeEEEEEeee
Q psy16424        175 MSDVIMRHDIPD--LGTM-SEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKE------DSKRIVTFANHDDYISFRHHNY  245 (295)
Q Consensus       175 I~nv~l~~di~~--~g~~-~~~~P~LIfnnF~t~lg~~i~~il~~LFp~p~~------~~rRVv~F~n~~d~I~FRHy~y  245 (295)
                      +.+|.+.+|++.  .+++ ..++|+|||+||.+..|++++++|++|||.+..      ..+|||+|++++|.|+||||.|
T Consensus        81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i  160 (180)
T smart00879       81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI  160 (180)
T ss_pred             EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEE
Confidence            999999999987  3443 678999999999999999999999999998542      4799999999999999999999


Q ss_pred             ee--cCCceeEEEeccceeE
Q psy16424        246 KR--DGKDIELKEVGPRFQL  263 (295)
Q Consensus       246 ~~--~~~~v~L~EIGPRf~L  263 (295)
                      .+  ..++++|+||||||+|
T Consensus       161 ~~~~~~~~v~l~eiGPr~~l  180 (180)
T smart00879      161 KFGKKKPRVELQEIGPRFTL  180 (180)
T ss_pred             EccCCCCceEEEEecCCccC
Confidence            84  4578999999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>KOG2971|consensus

Probab=100.00  E-value=1.8e-39  Score=292.70  Aligned_cols=193  Identities=21%  Similarity=0.340  Sum_probs=177.0

Q ss_pred             CCeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeecc--ccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCce
Q psy16424         93 DPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNR--GNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPT  170 (295)
Q Consensus        93 ~PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~R--g~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT  170 (295)
                      ..+|||++||+.|-+.++||+||..++||+....+  .+..+..|.++|..++|+.+++|..++..++|||++..|+|||
T Consensus        49 K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS  128 (299)
T KOG2971|consen   49 KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS  128 (299)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence            47999999999999999999999999999987654  3567888999999999999999999999999999999999999


Q ss_pred             EEEEEceeEeccccCCCCCC-CCCCcEEEee-CCCC-chhhHHHHHHHhcCCCCC------CCCCeEEEEeecCCeEEEE
Q psy16424        171 AYFTMSDVIMRHDIPDLGTM-SEQYPHLVFH-NFKT-QLGQRVMSILKYLFPVPK------EDSKRIVTFANHDDYISFR  241 (295)
Q Consensus       171 ~~F~I~nv~l~~di~~~g~~-~~~~P~LIfn-nF~t-~lg~~i~~il~~LFp~p~------~~~rRVv~F~n~~d~I~FR  241 (295)
                      +.|.|+|++++.|++..||| .+++|.|.|+ +|.+ ++-++++++|.+.|..|+      ...++|++|+..+|.||||
T Consensus       129 vkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfR  208 (299)
T KOG2971|consen  129 VKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFR  208 (299)
T ss_pred             eEEehhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEE
Confidence            99999999999999999998 7899999998 5986 677999999999998764      3468999999999999999


Q ss_pred             EeeeeecCCceeEEEeccceeEEEEEEecCcCCCCCCcceeEEecCcee
Q psy16424        242 HHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGR  290 (295)
Q Consensus       242 Hy~y~~~~~~v~L~EIGPRf~LkL~kI~~Gt~~~~~~g~~ew~~~~~~~  290 (295)
                      +|+|.. .+++.|.||||||+|.+++|.+|+|+    |.+.|.+..|+.
T Consensus       209 nyqI~~-~ed~~L~EiGPRfvl~~ikif~gsFg----G~~lYenp~yvs  252 (299)
T KOG2971|consen  209 NYQISE-EEDKTLIEIGPRFVLNVIKIFEGSFG----GPTLYENPKYVS  252 (299)
T ss_pred             EeEecc-ccCcceeeeccHHHHhHHHHHhccCC----CceeecCccccC
Confidence            999963 36799999999999999999999999    999999999864

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=269.49  Aligned_cols=181  Identities=37%  Similarity=0.598  Sum_probs=173.3

Q ss_pred             CeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeC-CCCceEE
Q psy16424         94 PKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHL-PYGPTAY  172 (295)
Q Consensus        94 PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~l-P~GPT~~  172 (295)
                      ||+||||||+||+++++|++||..+|||+.+..||+.++.++++.|...|.++++|++|++|+|..|.++++ |.||+++
T Consensus         2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~   81 (191)
T COG2136           2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFS   81 (191)
T ss_pred             CcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             EEEceeEeccccCCCCC-CCCCCcEEEeeCCCCchh-hHHHHHHHhc----CCC-CCCCCCeEEEEeecCCeEEEEEeee
Q psy16424        173 FTMSDVIMRHDIPDLGT-MSEQYPHLVFHNFKTQLG-QRVMSILKYL----FPV-PKEDSKRIVTFANHDDYISFRHHNY  245 (295)
Q Consensus       173 F~I~nv~l~~di~~~g~-~~~~~P~LIfnnF~t~lg-~~i~~il~~L----Fp~-p~~~~rRVv~F~n~~d~I~FRHy~y  245 (295)
                      |+|+|++++++++..++ ...+.|++|++||.+.+| +.+.++|+.+    |+. +......|+++++++++++||+|.|
T Consensus        82 f~l~~v~l~re~~~~~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~~~~  161 (191)
T COG2136          82 FKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHRR  161 (191)
T ss_pred             EEEecceEEEeccccCCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEeeee
Confidence            99999999999999987 678999999999999998 8999999999    876 6667899999999999999999999


Q ss_pred             eecCCceeEEEeccceeEEEEEEecCcCC
Q psy16424        246 KRDGKDIELKEVGPRFQLKLYEIKLGTLD  274 (295)
Q Consensus       246 ~~~~~~v~L~EIGPRf~LkL~kI~~Gt~~  274 (295)
                      .+....+.++|+||||+|++..++.|+.+
T Consensus       162 ~~~~~~~~~~~vgp~~~~r~~~~~~g~~~  190 (191)
T COG2136         162 VFEEDGIGLEEVGPRLTLRLWRMEDGRGE  190 (191)
T ss_pred             EeeeeeeeEEEeCceeeeehhhhhhcccc
Confidence            99878899999999999999999999654

>KOG2963|consensus

Probab=100.00  E-value=1.3e-35  Score=277.57  Aligned_cols=189  Identities=23%  Similarity=0.383  Sum_probs=166.4

Q ss_pred             CCCeEEEEeCCCCCHhHHHHHHHHHhcC-CCcEee--ccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCC
Q psy16424         92 EDPKIMITTSRDPSSRLKMFVKELRLIF-PNSQRM--NRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYG  168 (295)
Q Consensus        92 ~~PKvLITtSr~pS~rl~~f~kdLr~l~-Pns~~~--~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~G  168 (295)
                      ..|.++|.+++.....+++|..|||.+| ||+..-  .|+.++|||++.+|+.+||||+++++.+.. ..+|.|+++|.|
T Consensus        24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~-nlslki~R~PqG  102 (405)
T KOG2963|consen   24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQG  102 (405)
T ss_pred             cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccC-ceeEEEEecCCC
Confidence            3589999999999999999999999999 998753  478999999999999999999999999886 589999999999


Q ss_pred             ceEEEEEceeEeccccCCCCC---C----CCCCcEEEeeCCCC---chhhHHHHHHHhcCCCCC------CCCCeEEEEe
Q psy16424        169 PTAYFTMSDVIMRHDIPDLGT---M----SEQYPHLVFHNFKT---QLGQRVMSILKYLFPVPK------EDSKRIVTFA  232 (295)
Q Consensus       169 PT~~F~I~nv~l~~di~~~g~---~----~~~~P~LIfnnF~t---~lg~~i~~il~~LFp~p~------~~~rRVv~F~  232 (295)
                      ||++|+|+.|+|.+|+.....   +    ..++|+||+|||++   ++.+++.+|||+|||+.+      .+++||+.++
T Consensus       103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin  182 (405)
T KOG2963|consen  103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN  182 (405)
T ss_pred             CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence            999999999999999987532   2    57899999999986   466899999999999843      4689999999


Q ss_pred             e--cCCeEEEEEeeeeec-------------------------------------C------------------------
Q psy16424        233 N--HDDYISFRHHNYKRD-------------------------------------G------------------------  249 (295)
Q Consensus       233 n--~~d~I~FRHy~y~~~-------------------------------------~------------------------  249 (295)
                      +  +.+.|.||||.|...                                     +                        
T Consensus       183 yn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~~~  262 (405)
T KOG2963|consen  183 YNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDVKE  262 (405)
T ss_pred             cCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccchh
Confidence            7  456999999998541                                     0                        


Q ss_pred             ------------------CceeEEEeccceeEEEEEEecCcCCCCCCcceeEEe
Q psy16424        250 ------------------KDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL  285 (295)
Q Consensus       250 ------------------~~v~L~EIGPRf~LkL~kI~~Gt~~~~~~g~~ew~~  285 (295)
                                        ..|+|+|||||+||+|+||++|.++    |+|.|.-
T Consensus       263 eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~----GkVlyH~  312 (405)
T KOG2963|consen  263 EVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICE----GKVLYHE  312 (405)
T ss_pred             hhhccccccccCCCcccccceeeEeecccceEEEEEeeccccc----cceEEee
Confidence                              1589999999999999999999999    9998853

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.6e-35  Score=260.11  Aligned_cols=207  Identities=23%  Similarity=0.373  Sum_probs=184.2

Q ss_pred             CcccHHhh---cC-CCCCeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccc--cchHHHHHHHHHhCCCCeEEEEEeec
Q psy16424         81 HQDDEYRW---AG-IEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRG--NYEMKQLIHACRANDVTDFIVVHEHR  154 (295)
Q Consensus        81 ~~ddey~~---~~-~~~PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg--~~~lkdlve~a~~~~~t~lii~~e~r  154 (295)
                      +.|.||-.   +| ....+++|++||++|.+.+||++||..++||+....+.  +..+.++.++|...+|+++++|..++
T Consensus        14 d~~~e~~qgn~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrk   93 (283)
T COG5154          14 DEDEEYVQGNSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRK   93 (283)
T ss_pred             cchhHHhccchhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecc
Confidence            34556762   33 34679999999999999999999999999999877653  66788999999999999999999999


Q ss_pred             CCCCeEEEEeCCCCceEEEEEceeEeccccCCCCCC-CCCCcEEEeeC-CCC-chhhHHHHHHHhcCCCCC------CCC
Q psy16424        155 GIPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTM-SEQYPHLVFHN-FKT-QLGQRVMSILKYLFPVPK------EDS  225 (295)
Q Consensus       155 g~p~~L~I~~lP~GPT~~F~I~nv~l~~di~~~g~~-~~~~P~LIfnn-F~t-~lg~~i~~il~~LFp~p~------~~~  225 (295)
                      ..+.+||+++.|+|||+.|.++|.++++|+...||+ .++.|.|.|+. |.+ |+-+.++++|++.|..|+      ...
T Consensus        94 r~Dlyl~~ar~pnGptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfi  173 (283)
T COG5154          94 RSDLYLMGARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFI  173 (283)
T ss_pred             cccceeeeccCCCCCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccch
Confidence            999999999999999999999999999999999997 78999999985 886 777999999999998864      347


Q ss_pred             CeEEEEeecCCeEEEEEeeeeec----CCceeEEEeccceeEEEEEEecCcCCCCCCcceeEEecCceec
Q psy16424        226 KRIVTFANHDDYISFRHHNYKRD----GKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWALFRMGRI  291 (295)
Q Consensus       226 rRVv~F~n~~d~I~FRHy~y~~~----~~~v~L~EIGPRf~LkL~kI~~Gt~~~~~~g~~ew~~~~~~~~  291 (295)
                      ++|++|+..+|.||||.|.|...    .++|+|.||||||.|.+++|.+|+|.    |...|.+..|+..
T Consensus       174 D~v~~f~i~DgkIWvR~YeI~re~ed~~~dv~L~EIGPRfVmtvi~iLEgsFg----Gp~iYkn~~~vs~  239 (283)
T COG5154         174 DKVLCFFILDGKIWVRCYEIGRENEDKSKDVKLEEIGPRFVMTVIKILEGSFG----GPAIYKNETFVSS  239 (283)
T ss_pred             hheEEEEEecCeEEEEEEeeccccccccccceeeeeccHHHHHHHHHHHhccC----Cceeeecccccch
Confidence            89999999999999999999643    36799999999999999999999999    8899999988753

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.97  E-value=3.4e-29  Score=223.30  Aligned_cols=173  Identities=18%  Similarity=0.349  Sum_probs=137.9

Q ss_pred             EEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCC---CceEE
Q psy16424         96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPY---GPTAY  172 (295)
Q Consensus        96 vLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~---GPT~~  172 (295)
                      ||||||++||+++++|++||..+||||.+++||+.++++|++.|..+|+|++|||+|++|+|++|.|+|||.   |||++
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~   81 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY   81 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence            799999999999999999999999999999999999999999999999999999999999999999999985   55999


Q ss_pred             EEEceeEecccc--CCCCCCCCCCcEEEeeCCCCchhh-HHHHHHHhcCCCC---CC-CC----------CeEEEEeecC
Q psy16424        173 FTMSDVIMRHDI--PDLGTMSEQYPHLVFHNFKTQLGQ-RVMSILKYLFPVP---KE-DS----------KRIVTFANHD  235 (295)
Q Consensus       173 F~I~nv~l~~di--~~~g~~~~~~P~LIfnnF~t~lg~-~i~~il~~LFp~p---~~-~~----------rRVv~F~n~~  235 (295)
                      |+|+||++++||  ++.+++++++|++|.++|.+.+|. ..+..+...+..|   .. .|          +-|+......
T Consensus        82 FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~~~~  161 (208)
T PRK03972         82 LYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIERHP  161 (208)
T ss_pred             EEEccEEEHHHcccCCCCCccccccEEEEcCCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEecCC
Confidence            999999999999  457889999999999999999985 5666777777653   11 11          2222222211


Q ss_pred             CeEEEEEeeeeecCCceeEEEeccceeEEEEEEecCc
Q psy16424        236 DYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGT  272 (295)
Q Consensus       236 d~I~FRHy~y~~~~~~v~L~EIGPRf~LkL~kI~~Gt  272 (295)
                      --.-+-.|++...    +-.-+||-+..+.+..+.|-
T Consensus       162 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  194 (208)
T PRK03972        162 RGMAVNFYRLDVT----KERPVGPLIFVKIWIMEDGR  194 (208)
T ss_pred             CceEEEEEEeccc----cccccCCcEEEEEEEeccCc
Confidence            1123333444322    22346999988887776553

>PRK00933 ribosomal biogenesis protein; Validated

Probab=99.49  E-value=8.4e-13  Score=114.87  Aligned_cols=149  Identities=24%  Similarity=0.473  Sum_probs=105.2

Q ss_pred             EEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEEE
Q psy16424         96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTM  175 (295)
Q Consensus        96 vLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~I  175 (295)
                      ++||||++||.++++|+++|...+ |+.+++||+.+++++++.|..   .++++|+|++|+|++|.|+.+-..+.+.+.+
T Consensus         1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~   76 (165)
T PRK00933          1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL   76 (165)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence            489999999999999999999999 999999999999999887654   4999999999999999999998888777655


Q ss_pred             ceeEeccccCCCCCCCCCCcEEEeeCCCCchhhHHHHHHHhcCC-C-CC-----------CCCCeEEEEeecCCeEEEEE
Q psy16424        176 SDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFP-V-PK-----------EDSKRIVTFANHDDYISFRH  242 (295)
Q Consensus       176 ~nv~l~~di~~~g~~~~~~P~LIfnnF~t~lg~~i~~il~~LFp-~-p~-----------~~~rRVv~F~n~~d~I~FRH  242 (295)
                       ++.+..+.... ......|.+  .++... +.-+.++|..... . |+           ..++.++.|...+..+|   
T Consensus        77 -~v~~~~~~~~~-~~~~~~p~~--~~~~~~-~~~~~e~f~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f---  148 (165)
T PRK00933         77 -SVKLQREISGP-VFKNRRPIK--SAFDVG-GDELAELFDYFLFYDLDEVRGLFDTVCLIEDGDIVLEFLGSDKSLF---  148 (165)
T ss_pred             -EeeeecccCcc-eeecCCCcc--cchhhH-HHHHHHHHHHHHhhhhhhhhcccCceeEeecCCceEEEecCCccee---
Confidence             57777776533 234444533  333322 4444554444322 1 21           12334444433333333   


Q ss_pred             eeeeecCCceeEEEeccceeEEEEEEec
Q psy16424        243 HNYKRDGKDIELKEVGPRFQLKLYEIKL  270 (295)
Q Consensus       243 y~y~~~~~~v~L~EIGPRf~LkL~kI~~  270 (295)
                                    +||++.++=+++..
T Consensus       149 --------------~gp~~~i~~~k~~~  162 (165)
T PRK00933        149 --------------IGPRLKIKGIKKMD  162 (165)
T ss_pred             --------------ecceeEEEEEEEEe
Confidence                          89999999888753

>KOG3031|consensus

Probab=99.47  E-value=2e-13  Score=125.87  Aligned_cols=169  Identities=22%  Similarity=0.287  Sum_probs=134.3

Q ss_pred             CCCCHhHHHHHHHHHhcC-CCcEeeccccch-----HHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCc---eEE
Q psy16424        102 RDPSSRLKMFVKELRLIF-PNSQRMNRGNYE-----MKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGP---TAY  172 (295)
Q Consensus       102 r~pS~rl~~f~kdLr~l~-Pns~~~~Rg~~~-----lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GP---T~~  172 (295)
                      ...+..+.+-|.||..+- |-+..++|+++.     -..+..+...+.|+-+++-+-+++.|++|+|++.-++-   .+.
T Consensus        36 ~~~~~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiE  115 (307)
T KOG3031|consen   36 MKTNKTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIE  115 (307)
T ss_pred             hhhchHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHH
Confidence            345588999999999996 999999998642     12344444555555555555557889999999999986   478


Q ss_pred             EEEceeEeccccCCCCCCCCCCcEEEeeC--CC-CchhhHHHHHHHhcCCCCCC------CCCeEEEEeecCCe-EEEEE
Q psy16424        173 FTMSDVIMRHDIPDLGTMSEQYPHLVFHN--FK-TQLGQRVMSILKYLFPVPKE------DSKRIVTFANHDDY-ISFRH  242 (295)
Q Consensus       173 F~I~nv~l~~di~~~g~~~~~~P~LIfnn--F~-t~lg~~i~~il~~LFp~p~~------~~rRVv~F~n~~d~-I~FRH  242 (295)
                      +.|.||...+|+...+-..+..|+|+|+|  |. ++.-++++++|..+|..+.-      .-++|+.|+..++. |+|||
T Consensus       116 lgI~~ykslsdF~~~k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~  195 (307)
T KOG3031|consen  116 LGIENYKSLSDFKAAKITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRV  195 (307)
T ss_pred             HhhhhhhhhhhhhccCCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeee
Confidence            99999999999988764468899999999  44 46668999999999988632      35899999987775 99999


Q ss_pred             eeeeec--C---CceeEEEeccceeEEEEEEec
Q psy16424        243 HNYKRD--G---KDIELKEVGPRFQLKLYEIKL  270 (295)
Q Consensus       243 y~y~~~--~---~~v~L~EIGPRf~LkL~kI~~  270 (295)
                      |.....  +   +.|+|.|+||+++|.+.+...
T Consensus       196 Y~lklkKs~~~~PRiELeE~GPsldf~irR~~~  228 (307)
T KOG3031|consen  196 YRLKLKKSGTRTPRIELEEMGPSLDFEIRRTKL  228 (307)
T ss_pred             eeeeeeeccCCCCceehhhcCCceeEEEEeccC
Confidence            987643  3   569999999999999999875

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=4.5e-06  Score=76.35  Aligned_cols=168  Identities=17%  Similarity=0.169  Sum_probs=124.2

Q ss_pred             CCCHhHHHHHHHHHhcC-CCcEeeccccch--HH---HHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCc---eEEE
Q psy16424        103 DPSSRLKMFVKELRLIF-PNSQRMNRGNYE--MK---QLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGP---TAYF  173 (295)
Q Consensus       103 ~pS~rl~~f~kdLr~l~-Pns~~~~Rg~~~--lk---dlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GP---T~~F  173 (295)
                      ..++.+...+=|+..+- |-...++|++..  ..   -+--+...+.+.-.+++...++.+.+|.|.+.-+--   .+.|
T Consensus        37 s~~k~lldvi~d~~alkkp~~i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl  116 (316)
T COG5106          37 SERKTLLDVICDTEALKKPKEIGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIEL  116 (316)
T ss_pred             ccchhhhhhhcchhhhccchhhccccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHH
Confidence            34456677777777764 888888887542  11   233345566777778888888899999999876643   4678


Q ss_pred             EEceeEeccccCCCCCCCCCCcEEEeeC--CCC-chhhHHHHHHHhcCCC-CC--CC---CCeEEEEeecCC--------
Q psy16424        174 TMSDVIMRHDIPDLGTMSEQYPHLVFHN--FKT-QLGQRVMSILKYLFPV-PK--ED---SKRIVTFANHDD--------  236 (295)
Q Consensus       174 ~I~nv~l~~di~~~g~~~~~~P~LIfnn--F~t-~lg~~i~~il~~LFp~-p~--~~---~rRVv~F~n~~d--------  236 (295)
                      .|.+|....|+...+...+..|.++|.|  |++ |.-++++.+|-..|.. +.  .+   -..|+.-+.+++        
T Consensus       117 ~i~~yksvsdF~~~~~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp  196 (316)
T COG5106         117 KINRYKSVSDFECAGPELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLP  196 (316)
T ss_pred             hhhhhhehhhhhccCCccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhcccccc
Confidence            8999999999988887788899999997  775 5668899999999987 31  12   357777765543        


Q ss_pred             eEEEEEeeee--ec---CCceeEEEeccceeEEEEEEec
Q psy16424        237 YISFRHHNYK--RD---GKDIELKEVGPRFQLKLYEIKL  270 (295)
Q Consensus       237 ~I~FRHy~y~--~~---~~~v~L~EIGPRf~LkL~kI~~  270 (295)
                      .+.||-|.-.  ++   -..++|.|+|||+++++.++.-
T Consensus       197 ~v~fRVyk~k~~kt~~~lpr~elee~GPrldf~i~R~~~  235 (316)
T COG5106         197 LVVFRVYKTKLLKTKTNLPRLELEECGPRLDFEIVRSYH  235 (316)
T ss_pred             ceeeeeeecccccccCCCCceehhhcccceeeEEEeecC
Confidence            3578887643  11   2579999999999999999864

>PRK03972 ribosomal biogenesis protein; Validated

Probab=95.34  E-value=0.13  Score=46.55  Aligned_cols=76  Identities=14%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             EEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEe------CCCCc
Q psy16424         96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICH------LPYGP  169 (295)
Q Consensus        96 vLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~------lP~GP  169 (295)
                      .+|||+.+++..+...++.+...+ +..++.|++.++.+|.   ...+..+++||..|-. ...+.+.+      -|-||
T Consensus       107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~-~~~~~~~~~~~~~~~~~~~  181 (208)
T PRK03972        107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPR-GMAVNFYRLDVTKERPVGP  181 (208)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCC-ceEEEEEEeccccccccCC
Confidence            589999999999999999999998 8888999999999875   3456678888866521 13455555      36788


Q ss_pred             eEEEEEc
Q psy16424        170 TAYFTMS  176 (295)
Q Consensus       170 T~~F~I~  176 (295)
                      .+..++-
T Consensus       182 ~~~~~~~  188 (208)
T PRK03972        182 LIFVKIW  188 (208)
T ss_pred             cEEEEEE
Confidence            8776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
2cxh_A	217	Crystal Structure Of Probable Ribosomal Biogenesis		7e-08

>pdb|2CXH|A Chain A, Crystal Structure Of Probable Ribosomal Biogenesis Protein From Aeropyrum Pernix K1 Length = 217

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 87  RWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTD 146
           R +G+   +I++TTSR PS R++ FVK+L    P + R  RG+Y  ++L           
Sbjct: 27  RPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSXEELAREAIIRGADR 86
Query: 147 FIVVHEHRGIPDTL 160
            +VV E RG P  +
Sbjct: 87  IVVVGERRGNPGII 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	3e-70
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	9e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2 Length = 217

 Score =  215 bits (549), Expect = 3e-70
 Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 20/197 (10%)

Query: 83  DDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRAN 142
             + R +G+   +I++TTSR PS R++ FVK+L    P + R  RG+Y M++L       
Sbjct: 23  GGKGRPSGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIR 82

Query: 143 DVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTMSDVIM---------RHDIPDL--GTMS 191
                +VV E RG P  ++  +   GP     +   I+         R  +P L  G + 
Sbjct: 83  GADRIVVVGERRGNP-GIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVL 141

Query: 192 EQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSK---RIVTFANHDDYISFRHHNYKRD 248
              P  +      +     +         P+        I +       ++FR+      
Sbjct: 142 VARP--LDSGVAVEFADAFVIAFHARLKPPEAAGYVEAVIESLDARTVAVTFRYGGAP-- 197

Query: 249 GKDIELKEVGPRFQLKL 265
                L+   P   +K 
Sbjct: 198 -VGPMLRLGKPAEMVKR 213

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2 Length = 156

 Score =  130 bits (327), Expect = 9e-38
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 15/168 (8%)

Query: 96  IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
           +++TTSR PS R + F + L  I    + +NRG   ++ ++   R        VV E  G
Sbjct: 2   MLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEAR----GPVAVVSERHG 56

Query: 156 IPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILK 215
            P  +       G    + + +       P+L          V  +      + + +++ 
Sbjct: 57  NPARITF-LDERGGERGYILFNPSFEMKKPEL------ADKAVRVSSCPPGSEGLCNLM- 108

Query: 216 YLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQL 263
               V +  S+   +    ++Y         R G     K +   F++
Sbjct: 109 -GLEVDESSSRDAWSIRTDEEYAWVMELMDAR-GTPAGFKLLIRDFRV 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 46/308 (14%), Positives = 97/308 (31%), Gaps = 79/308 (25%)

Query: 11  EYLYRKSLEEKQRAIQEKKDRLRKSLDGNKKIPTD--------LKNQALSLQRKLDWEDE 62
           +Y Y+  L   + A  +  D  +   D  K I +          K+      R       
Sbjct: 15  QYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 63  GPELAVSIGTETSGGGLTHQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNS 122
             E  V    E        + + Y++  +  P  + T  R PS   +M++++   ++ ++
Sbjct: 74  KQEEMVQKFVEEV-----LRIN-YKF--LMSP--IKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 123 QRMNRGNYEMKQLIHACRAN----DVTDFIVVHEHRGIP-------------DTLVICHL 165
           Q   + N    Q     R           +++    G+                 V C +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---GVLGSGKTWVALDVCLSYKVQCKM 180

Query: 166 PYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDS 225
            +    +  + +    +    +  M ++  + +  N+ ++                    
Sbjct: 181 DFK-IFWLNLKN---CNSPETVLEMLQKLLYQIDPNWTSR-------------------- 216

Query: 226 KRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLGTLDTVEAADTEWAL 285
                 ++H   I  R H+ +      EL+ +    + K YE  L  L  V+ A   W  
Sbjct: 217 ------SDHSSNIKLRIHSIQA-----ELRRL---LKSKPYENCLLVLLNVQNAKA-WNA 261

Query: 286 FRMG-RIL 292
           F +  +IL
Sbjct: 262 FNLSCKIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	100.0
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.9

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=100.00  E-value=9.7e-36  Score=267.30  Aligned_cols=144  Identities=20%  Similarity=0.293  Sum_probs=127.5

Q ss_pred             CCcccHHhhcCCCCCeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCe
Q psy16424         80 THQDDEYRWAGIEDPKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDT  159 (295)
Q Consensus        80 ~~~ddey~~~~~~~PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~  159 (295)
                      .+.+|++. +|..+|||||||||+||+++++|++||+.+|||+.+++||+.++++|++.|..++||++|+|+|++++|++
T Consensus        21 ~~g~~~~~-~~~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~   99 (217)
T 2cxh_A           21 MLGGKGRP-SGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGI   99 (217)
T ss_dssp             -------------CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEE
T ss_pred             cccCcccc-cCCCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcE
Confidence            44557777 68999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCC---c-eEEEEEceeEeccccCCCCCC-CCCCcEEEeeCCCCchhhHHHHHHHhcCCCCCCCC
Q psy16424        160 LVICHLPYG---P-TAYFTMSDVIMRHDIPDLGTM-SEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDS  225 (295)
Q Consensus       160 L~I~~lP~G---P-T~~F~I~nv~l~~di~~~g~~-~~~~P~LIfnnF~t~lg~~i~~il~~LFp~p~~~~  225 (295)
                      |||+|+|+|   | |++|+|+|+++++||+..|++ ..++|+|+ +||++++|++++++|++|||.|..+.
T Consensus       100 L~~~hlP~G~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~-~nF~t~~g~~i~~~f~~lFp~P~~~~  169 (217)
T 2cxh_A          100 IRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA-RPLDSGVAVEFADAFVIAFHARLKPP  169 (217)
T ss_dssp             EEEEECCSSSCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE-EESSSSTHHHHHHHHHHHHCCBSSCC
T ss_pred             EEEEECCCCCCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE-eeecCchHHHHHHHHHHHcCCCCCCh
Confidence            999999999   9 999999999999999999976 67999999 99999999999999999999987543

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.90  E-value=2.9e-23  Score=177.71  Aligned_cols=149  Identities=19%  Similarity=0.368  Sum_probs=118.1

Q ss_pred             eEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEE
Q psy16424         95 KIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFT  174 (295)
Q Consensus        95 KvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~  174 (295)
                      |++||||++||+++++|+++|..++ |+.+++||+.++++|++.|...    +++|+|++|+|++|.|+|+|+|||++|+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~~f~   75 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERGYIL   75 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH-TCEECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh-CCEEEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEEEEE
Confidence            6899999999999999999999999 9999999999999999988554    9999999999999999999999999999


Q ss_pred             EceeEeccccCCCCCCCCCCcEEEeeCCCCchhhHHHHHHHhcCCCCCCCCCeEEEEeecCCe---EEEEEeeeeecCCc
Q psy16424        175 MSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDY---ISFRHHNYKRDGKD  251 (295)
Q Consensus       175 I~nv~l~~di~~~g~~~~~~P~LIfnnF~t~lg~~i~~il~~LFp~p~~~~rRVv~F~n~~d~---I~FRHy~y~~~~~~  251 (295)
                      + |+++++|++...      |..|...+.++.++.+.++|.  ||..+..+++|++|..++++   |.|--    ..+. 
T Consensus        76 ~-nv~l~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~i~f~~----~~~~-  141 (156)
T 1w94_A           76 F-NPSFEMKKPELA------DKAVRVSSCPPGSEGLCNLMG--LEVDESSSRDAWSIRTDEEYAWVMELMD----ARGT-  141 (156)
T ss_dssp             E-EEEECSSCCCCS------SCCCEESCCCTTCHHHHHHHT--CEECCSCCTTEEEEECCSSSSEEEEEEC----TTSS-
T ss_pred             E-ceEEcccCcccC------CceEEEecCChhHHHHHHHHC--CCccCCCCceEEEEEeCCCcEEEEEEEc----CCCC-
Confidence            8 999999987432      444666677887766666554  24334556789999866655   33322    1112 


Q ss_pred             eeEEEeccceeEEEE
Q psy16424        252 IELKEVGPRFQLKLY  266 (295)
Q Consensus       252 v~L~EIGPRf~LkL~  266 (295)
                          .+||++-.+=+
T Consensus       142 ----~~Gp~i~ik~~  152 (156)
T 1w94_A          142 ----PAGFKLLIRDF  152 (156)
T ss_dssp             ----EEEEEEEEEEE
T ss_pred             ----ccCCEEEEEEe
Confidence                46988766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	2e-65
d1w94a1	154	c.51.1.2 (A:1-154) Probable ribosomal biogenesis p	7e-57

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score =  201 bits (512), Expect = 2e-65
 Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 17/178 (9%)

Query: 95  KIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHR 154
           +I++TTSR PS R++ FVK+L    P + R  RG+Y M++L            +VV E R
Sbjct: 3   RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERR 62

Query: 155 GIPDTLVICHLPYGP-----TAYFTMSDVIMRHDI----PDLGTMSEQYPHLVFHNFKTQ 205
           G P  ++  +   GP        F +  V +  +     P L          +      +
Sbjct: 63  GNPG-IIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVE 121

Query: 206 LGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQL 263
                +         P+          + D         Y           VGP  +L
Sbjct: 122 FADAFVIAFHARLKPPEAAGYVEAVIESLDARTVAVTFRYGG-------APVGPMLRL 172

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  177 bits (452), Expect = 7e-57
 Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 26/178 (14%)

Query: 96  IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRG 155
           +++TTSR PS R + F + L  I      +NRG   ++ ++   R        VV E  G
Sbjct: 1   MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEAR----GPVAVVSERHG 55

Query: 156 IPDTLVICHLPYGPTAYFTMSDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILK 215
            P  +       G    + + +                 P L     +          L 
Sbjct: 56  NPARITF-LDERGGERGYILFNPSFEMK----------KPELADKAVRVSSCPPGSEGLC 104

Query: 216 YLFPVPKEDSKR--IVTFANHDDYISFRHHNYKRDGKDIELKEVGPRFQLKLYEIKLG 271
            L  +  ++S      +    ++Y         R             F+L + + ++G
Sbjct: 105 NLMGLEVDESSSRDAWSIRTDEEYAWVMELMDARGTP--------AGFKLLIRDFRVG 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	100.0
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	100.0

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=4e-44  Score=311.69  Aligned_cols=162  Identities=22%  Similarity=0.320  Sum_probs=151.4

Q ss_pred             CeEEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCc----
Q psy16424         94 PKIMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGP----  169 (295)
Q Consensus        94 PKvLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GP----  169 (295)
                      -|||||||++||+++++||+||+.+||||.+++||+++++||+++|..+||||+|||+|++|+| +|+++|+|+||    
T Consensus         2 ~kvLITTSr~ps~~~r~f~kdL~~v~Pns~~~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~~~   80 (180)
T d2cxha1           2 YRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERPD   80 (180)
T ss_dssp             CEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhCCCCEEeecCCCcHHHHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCCcc
Confidence            3899999999999999999999999999999999999999999999999999999999999998 69999999999    


Q ss_pred             -eEEEEEceeEeccccCCC----CCCCCCCcEEEeeCCCCchhhHHHHHHHhcCCCCCCCCCeEEEEeecCCeEEEEEee
Q psy16424        170 -TAYFTMSDVIMRHDIPDL----GTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPVPKEDSKRIVTFANHDDYISFRHHN  244 (295)
Q Consensus       170 -T~~F~I~nv~l~~di~~~----g~~~~~~P~LIfnnF~t~lg~~i~~il~~LFp~p~~~~rRVv~F~n~~d~I~FRHy~  244 (295)
                       |++|+|+||++++|++..    ++.+.+.|++|||||+|+||++++++|+++||.|+..+++|++|+|++|+||||+|+
T Consensus        81 ~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~lilnnf~t~Lg~~~~~~f~~lf~~p~~~~~~vvt~~n~~d~if~~~~~  160 (180)
T d2cxha1          81 NIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSGVAVEFADAFVIAFHARLKPPEAAGYVEAVIESLDARTVAVTFR  160 (180)
T ss_dssp             EEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSSSTHHHHHHHHHHHHCCBSSCCSSSCEEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEEEEEEehhhccccCCCCCCccccchhHhcccchHHHHHHHHHHHhhCCCchhcCcEEEEEEecCCeEEEEEEe
Confidence             999999999999999753    556788999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCceeEEEeccceeE
Q psy16424        245 YKRDGKDIELKEVGPRFQL  263 (295)
Q Consensus       245 y~~~~~~v~L~EIGPRf~L  263 (295)
                      |..       .++||++-+
T Consensus       161 ~~~-------~~~GP~~rl  172 (180)
T d2cxha1         161 YGG-------APVGPMLRL  172 (180)
T ss_dssp             CSS-------SEEEEEEEE
T ss_pred             cCC-------CCCCCEEEe
Confidence            853       257998644

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=5.2e-37  Score=259.63  Aligned_cols=150  Identities=21%  Similarity=0.297  Sum_probs=132.6

Q ss_pred             EEEEeCCCCCHhHHHHHHHHHhcCCCcEeeccccchHHHHHHHHHhCCCCeEEEEEeecCCCCeEEEEeCCCCceEEEEE
Q psy16424         96 IMITTSRDPSSRLKMFVKELRLIFPNSQRMNRGNYEMKQLIHACRANDVTDFIVVHEHRGIPDTLVICHLPYGPTAYFTM  175 (295)
Q Consensus        96 vLITtSr~pS~rl~~f~kdLr~l~Pns~~~~Rg~~~lkdlve~a~~~~~t~lii~~e~rg~p~~L~I~~lP~GPT~~F~I  175 (295)
                      ||||||++||+++++||+||..+|||+ +++||+.+++++++.|    +|++|||+|++|+|++|.| |+|+|||++|++
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~P~~-~~~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~f~l   74 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-YINRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERGYIL   74 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHHTCE-ECCCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEEEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhCCCe-EEEcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEEEEE
Confidence            699999999999999999999999985 8999999999999877    6899999999999999998 999999999999


Q ss_pred             ceeEeccccCCCCCCCCCCcEEEeeCCCCchhhHHHHHHHhcCCC-CCCCCCe-EEEEeecCCeEEEEEeeeeecCCcee
Q psy16424        176 SDVIMRHDIPDLGTMSEQYPHLVFHNFKTQLGQRVMSILKYLFPV-PKEDSKR-IVTFANHDDYISFRHHNYKRDGKDIE  253 (295)
Q Consensus       176 ~nv~l~~di~~~g~~~~~~P~LIfnnF~t~lg~~i~~il~~LFp~-p~~~~rR-Vv~F~n~~d~I~FRHy~y~~~~~~v~  253 (295)
                      +||++.+|          +|+||+|||.+.+|.+++++|+++||. |...++| |++|+|++|+|+++||.+.. ++++ 
T Consensus        75 ~~v~l~~e----------~p~li~~~f~t~lg~~v~~~L~~lf~~~~~~~~~~~~itf~n~~d~i~~~~~~d~~-g~~~-  142 (154)
T d1w94a1          75 FNPSFEMK----------KPELADKAVRVSSCPPGSEGLCNLMGLEVDESSSRDAWSIRTDEEYAWVMELMDAR-GTPA-  142 (154)
T ss_dssp             EEEEECSS----------CCCCSSCCCEESCCCTTCHHHHHHHTCEECCSCCTTEEEEECCSSSSEEEEEECTT-SSEE-
T ss_pred             eeEEcccc----------CCcCcccccccccchhHHHHHHHHcCCChhhcceeeEEEEecCCCEEEEEEEeecC-CCcc-
Confidence            99999886          699999999999999999999999998 4555554 99999999999999995543 3444 


Q ss_pred             EEEeccceeEEEEEEe
Q psy16424        254 LKEVGPRFQLKLYEIK  269 (295)
Q Consensus       254 L~EIGPRf~LkL~kI~  269 (295)
                          |  |.|++...+
T Consensus       143 ----~--~~l~ir~f~  152 (154)
T d1w94a1         143 ----G--FKLLIRDFR  152 (154)
T ss_dssp             ----E--EEEEEEEEE
T ss_pred             ----c--cEEEEEeee
Confidence                4  455554443