Psyllid ID: psy17086

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MNQNHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Secondary Structure (PSIPRED)
ccccccccccccccEEcccccccccccccccEEEEEEcccccEEEEEEEEEccccccccccEEEEEccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcccEEEEccccEccccccccEEEEEEccEcEEEEEEEEEccccccccccccEEEHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mnqnhkgdisvtETKFlvfpgkdscngdsggplvwknndtrkhYLIGLvsygtpecgigspgiyTRITAYLPWIIARMAYEV
Flexible Loop (DISEMBL)
mnqnhkgdisvtETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Low Complexity Region (SEG)
MNQNHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Disordered region (IsUnstruct)
***********TETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY**
Disordered Region (DISOPRED)
**********VTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA***
Disordered Region (DISEMBL)
********ISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Disordered Region (DISPRO)
***NHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNQNHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q5U405	543	Transmembrane protease se	yes	N/A	0.731	0.110	0.5	1e-10
Q9BYE2	581	Transmembrane protease se	yes	N/A	0.682	0.096	0.5	5e-10
O60235	418	Transmembrane protease se	no	N/A	0.634	0.124	0.527	1e-09
Q9JJS8	685	Mannan-binding lectin ser	no	N/A	0.646	0.077	0.535	2e-09
Q5E9Z2	558	Hyaluronan-binding protei	no	N/A	0.914	0.134	0.443	2e-09
Q91WP0	685	Mannan-binding lectin ser	no	N/A	0.658	0.078	0.490	3e-09
P40313	264	Chymotrypsin-like proteas	no	N/A	0.707	0.219	0.466	6e-09
O00187	686	Mannan-binding lectin ser	no	N/A	0.658	0.078	0.490	7e-09
Q14520	560	Hyaluronan-binding protei	no	N/A	0.902	0.132	0.435	8e-09
Q8K0D2	558	Hyaluronan-binding protei	no	N/A	0.914	0.134	0.430	9e-09

>sp|Q5U405|TMPSD_MOUSE Transmembrane protease serine 13 OS=Mus musculus GN=Tmprss13 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 80
           G+DSC GDSGGPLV + N+  + YL G+ S+GT       PG+YT++T  LPWI  +M  
Sbjct: 479 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWIYRKMES 536

Query: 81  EV 82
           EV
Sbjct: 537 EV 538

Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q9BYE2|TMPSD_HUMAN Transmembrane protease serine 13 OS=Homo sapiens GN=TMPRSS13 PE=2 SV=3

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           G+DSC GDSGGPLV + N+  + YL G+ S+GT       PG+YT++T  LPWI ++M
Sbjct: 498 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTGCGQRNKPGVYTKVTEVLPWIYSKM 553

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O60235|TM11D_HUMAN Transmembrane protease serine 11D OS=Homo sapiens GN=TMPRSS11D PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 3/55 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G D+C GDSGGPLV + +  R  +++G+VS+G  +CG+   PG+YTR+TAYL WI
Sbjct: 360 GVDACQGDSGGPLV-QEDSRRLWFIVGIVSWGD-QCGLPDKPGVYTRVTAYLDWI 412

May play some biological role in the host defense system on the mucous membrane independently of or in cooperation with other substances in airway mucous or bronchial secretions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9JJS8|MASP2_RAT Mannan-binding lectin serine protease 2 OS=Rattus norvegicus GN=Masp2 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 44/56 (78%), Gaps = 3/56 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP--GIYTRITAYLPWI 74
           GKDSC GDSGG LV+ +N+T++ ++ G+VS+G+  CG GS   G+YT++T Y+PWI
Sbjct: 624 GKDSCRGDSGGALVFLDNETQRWFVGGIVSWGSINCG-GSEQYGVYTKVTNYIPWI 678

Serum protease that plays an important role in the activation of the complement system via mannose-binding lectin. After activation by auto-catalytic cleavage it cleaves C2 and C4, leading to their activation and to the formation of C3 convertase.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q5E9Z2|HABP2_BOVIN Hyaluronan-binding protein 2 OS=Bos taurus GN=HABP2 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 4   NHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGI 63
           +H  D ++     L  PG+DSC GDSGGPL  + + T   Y+ G+VS+G  ECG   PG+
Sbjct: 482 DHSIDDNMICAGNLQKPGQDSCQGDSGGPLTCEKDGTS--YIYGIVSWGL-ECG-KRPGV 537

Query: 64  YTRITAYLPWIIARMAYEV 82
           YT++T +L WI A M  E 
Sbjct: 538 YTQVTKFLTWIKATMEKEA 556

Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VII.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q91WP0|MASP2_MOUSE Mannan-binding lectin serine protease 2 OS=Mus musculus GN=Masp2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP-GIYTRITAYLPWI 74
           GKDSC GDSGG LV+ +N+T++ ++ G+VS+G+  CG     G+YT++  Y+PWI
Sbjct: 624 GKDSCRGDSGGALVFLDNETQRWFVGGIVSWGSINCGAADQYGVYTKVINYIPWI 678

Serum protease that plays an important role in the activation of the complement system via mannose-binding lectin. After activation by auto-catalytic cleavage it cleaves C2 and C4, leading to their activation and to the formation of C3 convertase.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P40313|CTRL_HUMAN Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 80
           G  SC GDSGGPLV +  +T    LIG+VS+GT  C + +P +YTR++ +  WI   +AY
Sbjct: 206 GASSCQGDSGGPLVCQKGNT--WVLIGIVSWGTKNCNVRAPAVYTRVSKFSTWINQVIAY 263

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O00187|MASP2_HUMAN Mannan-binding lectin serine protease 2 OS=Homo sapiens GN=MASP2 PE=1 SV=4

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 625 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 679

Serum protease that plays an important role in the activation of the complement system via mannose-binding lectin. After activation by auto-catalytic cleavage it cleaves C2 and C4, leading to their activation and to the formation of C3 convertase.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q14520|HABP2_HUMAN Hyaluronan-binding protein 2 OS=Homo sapiens GN=HABP2 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 4   NHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGI 63
           +H  D S+     L  PG+D+C GDSGGPL  + + T  +Y+ G+VS+G  ECG   PG+
Sbjct: 484 DHMIDDSMICAGNLQKPGQDTCQGDSGGPLTCEKDGT--YYVYGIVSWGL-ECG-KRPGV 539

Query: 64  YTRITAYLPWIIARMAYE 81
           YT++T +L WI A +  E
Sbjct: 540 YTQVTKFLNWIKATIKSE 557

Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VII.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus musculus GN=Habp2 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 4   NHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGI 63
           +H  D S+     L  PG D+C GDSGGPL  + + T  +Y+ G+VS+G  ECG   PG+
Sbjct: 482 DHTIDDSMICAGNLQKPGSDTCQGDSGGPLTCEKDGT--YYVYGIVSWGQ-ECG-KKPGV 537

Query: 64  YTRITAYLPWIIARMAYEV 82
           YT++T +L WI   M  E 
Sbjct: 538 YTQVTKFLNWIKTTMHREA 556

Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VII.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
225713904	483	Serine protease easter precursor [Lepeop	0.719	0.122	0.508	2e-12
195111956	283	GI22460 [Drosophila mojavensis] gi|19391	0.829	0.240	0.441	8e-12
328721534	432	PREDICTED: transmembrane protease serine	0.682	0.129	0.576	3e-11
170055456	367	urokinase-type plasminogen activator [Cu	0.707	0.158	0.5	3e-11
158300254	324	AGAP012328-PA [Anopheles gambiae str. PE	0.841	0.212	0.479	4e-11
239792265	128	ACYPI007244 [Acyrthosiphon pisum]	0.682	0.437	0.576	4e-11
73913562	455	hemolymph proteinase 12 [Manduca sexta]	0.682	0.123	0.610	5e-11
56418405	455	hemolymph proteinase 12 [Manduca sexta]	0.682	0.123	0.610	5e-11
195588110	319	GD13921 [Drosophila simulans] gi|1941958	0.670	0.172	0.548	6e-11
24658948	319	CG6462 [Drosophila melanogaster] gi|7295	0.670	0.172	0.548	6e-11

>gi|225713904|gb|ACO12798.1| Serine protease easter precursor [Lepeophtheirus salmonis]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 46/61 (75%), Gaps = 2/61 (3%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRK--HYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           P KDSCN DSGGPL++K N+  +   + +G+VS+GT  CG+G PGIYTR++++L WI  +
Sbjct: 421 PQKDSCNADSGGPLIYKANEFSETPMFQVGIVSFGTRTCGVGKPGIYTRVSSFLDWIDQK 480

Query: 78  M 78
           +
Sbjct: 481 L 481

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195111956|ref|XP_002000542.1| GI22460 [Drosophila mojavensis] gi|193917136|gb|EDW16003.1| GI22460 [Drosophila mojavensis]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 9   ISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRIT 68
           ++  E   L  PG+ +C GDSGGPL+  ++ +R+  L+G+VSYG+  C  G P +YTR++
Sbjct: 207 VTPNEICALSAPGRGACMGDSGGPLILASDGSRQQQLVGIVSYGSSTCAQGKPDVYTRVS 266

Query: 69  AYLPWIIA 76
           +YLP+I A
Sbjct: 267 SYLPYISA 274

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721534|ref|XP_001944315.2| PREDICTED: transmembrane protease serine 9-like [Acyrthosiphon pisum]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 3/59 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
           GKDSC GDSGGPL+W   +  + YLIG+VSYG  ECG  G PG+YT++T+Y+ WI+ R+
Sbjct: 374 GKDSCRGDSGGPLMWSKRN--QFYLIGVVSYGFHECGDPGHPGVYTKVTSYMDWILNRI 430

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055456|ref|XP_001863590.1| urokinase-type plasminogen activator [Culex quinquefasciatus] gi|167875413|gb|EDS38796.1| urokinase-type plasminogen activator [Culex quinquefasciatus]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 44/58 (75%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           G+D+CNGDSGGPL+ +  +  ++Y+ GLVS+G  +CG   PG+YTR+  YL WI+A++
Sbjct: 303 GRDTCNGDSGGPLMKEVAEQGRYYVAGLVSFGPNKCGEQLPGVYTRVEHYLQWIVAKV 360

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300254|ref|XP_320219.3| AGAP012328-PA [Anopheles gambiae str. PEST] gi|157013070|gb|EAA00349.3| AGAP012328-PA [Anopheles gambiae str. PEST]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)

Query: 9   ISVTETKFLVF--PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTR 66
           + +TET+F     PGKD+CNGDSGGPL+ K   T  HY++G+VS+G   CG G P +YTR
Sbjct: 250 VPLTETQFCAMGTPGKDTCNGDSGGPLM-KTMKTL-HYVVGVVSFGPQRCGSGIPAVYTR 307

Query: 67  ITAYLPWIIARMA 79
           +  +  WI+  M 
Sbjct: 308 VDKFYDWIVGHMV 320

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239792265|dbj|BAH72494.1| ACYPI007244 [Acyrthosiphon pisum]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 3/59 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
           GKDSC GDSGGPL+W   +  + YLIG+VSYG  ECG  G PG+YT++T+Y+ WI+ R+
Sbjct: 70  GKDSCRGDSGGPLMWSKRN--QFYLIGVVSYGFHECGDPGHPGVYTKVTSYMDWILNRI 126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|73913562|gb|AAZ91694.1| hemolymph proteinase 12 [Manduca sexta]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 3/59 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 78
           GKDSC GDSGGPL+++N   RK+  +G+VSYG  ECGIG  PG+YT I  YLPWI A +
Sbjct: 397 GKDSCKGDSGGPLMYENE--RKYTAVGMVSYGLGECGIGGYPGVYTNIYPYLPWIKATI 453

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56418405|gb|AAV91010.1| hemolymph proteinase 12 [Manduca sexta]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 3/59 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 78
           GKDSC GDSGGPL+++N   RK+  +G+VSYG  ECGIG  PG+YT I  YLPWI A +
Sbjct: 397 GKDSCKGDSGGPLMYENE--RKYTAVGMVSYGLGECGIGGYPGVYTNIYPYLPWIKATI 453

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195588110|ref|XP_002083801.1| GD13921 [Drosophila simulans] gi|194195810|gb|EDX09386.1| GD13921 [Drosophila simulans]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 7/62 (11%)

Query: 21  GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWIIAR 77
           G+ +CNGDSGGP+V  W+N      YLIG+ S+G+ E C +G P +YTRITAYLPWI  +
Sbjct: 259 GRGACNGDSGGPVVYHWRNVS----YLIGVTSFGSAEGCEVGGPTVYTRITAYLPWIRQQ 314

Query: 78  MA 79
            A
Sbjct: 315 TA 316

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24658948|ref|NP_648011.1| CG6462 [Drosophila melanogaster] gi|7295398|gb|AAF50715.1| CG6462 [Drosophila melanogaster]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 7/62 (11%)

Query: 21  GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWIIAR 77
           G+ +CNGDSGGP+V  W+N      YLIG+ S+G+ E C +G P +YTRITAYLPWI  +
Sbjct: 259 GRGACNGDSGGPVVYHWRNVS----YLIGVTSFGSAEGCEVGGPTVYTRITAYLPWIRQQ 314

Query: 78  MA 79
            A
Sbjct: 315 TA 316

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
FB|FBgn0035663	319	CG6462 [Drosophila melanogaste	0.609	0.156	0.578	3.7e-14
ZFIN|ZDB-GENE-090309-3	506	tmprss13a "transmembrane prote	0.719	0.116	0.516	4.6e-12
FB|FBgn0051219	345	CG31219 [Drosophila melanogast	0.695	0.165	0.542	8.8e-12
FB|FBgn0027930	399	MP1 "Melanization Protease 1"	0.658	0.135	0.543	1.3e-11
UNIPROTKB|E9PIJ5	532	TMPRSS13 "Transmembrane protea	0.719	0.110	0.523	1.7e-11
UNIPROTKB|E9PRA0	567	TMPRSS13 "Transmembrane protea	0.719	0.104	0.523	1.9e-11
RGD|1310872	525	Tmprss13 "transmembrane protea	0.719	0.112	0.523	2.8e-11
FB|FBgn0036738	270	CG7542 [Drosophila melanogaste	0.646	0.196	0.517	2.9e-11
MGI|MGI:2682935	543	Tmprss13 "transmembrane protea	0.719	0.108	0.523	3e-11
UNIPROTKB|F1SNW5	385	LOC100623883 "Uncharacterized	0.682	0.145	0.55	3.2e-11

FB|FBgn0035663 CG6462 [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query:    21 GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWI 74
             G+ +CNGDSGGP+V  W+N      YLIG+ S+G+ E C +G P +YTRITAYLPWI
Sbjct:   259 GRGACNGDSGGPVVYHWRNVS----YLIGVTSFGSAEGCEVGGPTVYTRITAYLPWI 311

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

ZFIN|ZDB-GENE-090309-3 tmprss13a "transmembrane protease, serine 13a" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query:    21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 79
             G+DSC GDSGGPLV K+ D  + YL+G+ S+G   CG    PG+Y+R+T++LPWI  +M 
Sbjct:   445 GRDSCQGDSGGPLVCKD-DNNRWYLVGITSWGAG-CGQKQKPGVYSRVTSFLPWIYTKMQ 502

Query:    80 YE 81
              E
Sbjct:   503 QE 504

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

FB|FBgn0051219 CG31219 [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 8.8e-12, P = 8.8e-12
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query:    19 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIA 76
             + G D+C GDSGGPL+    D    YL G+ +YG+  CG IG PGIYTR +A+LPWI A
Sbjct:   284 YDGVDTCQGDSGGPLM-VTMDNSSVYLAGITTYGSKNCGQIGIPGIYTRTSAFLPWIKA 341

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0027930 MP1 "Melanization Protease 1" [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query:    21 GKDSCNGDSGGPLVWKN--NDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
             G DSC GDSGGPL+ ++  N    +Y+ G+VSYG   CG+ G PG+YTR+ AYL WI
Sbjct:   337 GVDSCRGDSGGPLLLEDYSNGNSNYYIAGVVSYGPTPCGLKGWPGVYTRVEAYLNWI 393

GO:0006952 "defense response" evidence=NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0035006 "melanization defense response" evidence=IMP;NAS

UNIPROTKB|E9PIJ5 TMPRSS13 "Transmembrane protease serine 13" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query:    21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             G+DSC GDSGGPLV + N+  + YL G+ S+GT  CG    PG+YT++T  LPWI ++M 
Sbjct:   468 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTG-CGQRNKPGVYTKVTEVLPWIYSKME 524

Query:    80 YEV 82
              EV
Sbjct:   525 SEV 527

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E9PRA0 TMPRSS13 "Transmembrane protease serine 13" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query:    21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             G+DSC GDSGGPLV + N+  + YL G+ S+GT  CG    PG+YT++T  LPWI ++M 
Sbjct:   503 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTG-CGQRNKPGVYTKVTEVLPWIYSKME 559

Query:    80 YEV 82
              EV
Sbjct:   560 SEV 562

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1310872 Tmprss13 "transmembrane protease, serine 13" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query:    21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             G+DSC GDSGGPLV + N+  + YL G+ S+GT  CG    PG+YT++T  LPWI  +M 
Sbjct:   461 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTG-CGQKNKPGVYTKVTEVLPWIYRKME 517

Query:    80 YEV 82
              EV
Sbjct:   518 SEV 520

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0036738 CG7542 [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query:    21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWII 75
             GK +C+GDSGGPLV+K  ++   YLIG  S+GT   C +G P ++TRI++YL WI+
Sbjct:   208 GKSTCHGDSGGPLVYKQGNSS--YLIGSTSFGTSMGCQVGFPAVFTRISSYLDWIL 261

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

MGI|MGI:2682935 Tmprss13 "transmembrane protease, serine 13" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query:    21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             G+DSC GDSGGPLV + N+  + YL G+ S+GT  CG    PG+YT++T  LPWI  +M 
Sbjct:   479 GRDSCQGDSGGPLVCEQNN--RWYLAGVTSWGTG-CGQKNKPGVYTKVTEVLPWIYRKME 535

Query:    80 YEV 82
              EV
Sbjct:   536 SEV 538

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1SNW5 LOC100623883 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query:    21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             GKDSC GDSGGPLV + ND+     +G+VS+G   CG+ G PGIYT ++ Y  W+IARM+
Sbjct:   303 GKDSCQGDSGGPLVCEFNDSWVQ--VGIVSWGIG-CGLRGYPGIYTEVSFYKDWVIARMS 359

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	1e-18
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	1e-18
pfam00089	218	pfam00089, Trypsin, Trypsin	3e-15
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	3e-14

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score = 75.4 bits (186), Expect = 1e-18
 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 5/55 (9%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           GKD+C GDSGGPLV  +    +  L+G+VS+G+  C   G PG+YTR+++YL WI
Sbjct: 179 GKDACQGDSGGPLVCNDG---RWVLVGIVSWGSG-CARPGKPGVYTRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score = 75.8 bits (187), Expect = 1e-18
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           GKD+C GDSGGPLV  +N      L+G+VS+G+  C     PG+YTR+++YL WI
Sbjct: 178 GKDACQGDSGGPLVCNDNGR--GVLVGIVSWGS-GCARPNYPGVYTRVSSYLDWI 229

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 66.7 bits (163), Expect = 3e-15
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           GKD+C GDSGGPLV  +       LIG+VS+G        PG+YT +++YL WI
Sbjct: 170 GKDACQGDSGGPLVCSDG-----ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
           P KD+C GDSGGP+  K  + R     G+VS+G   CG    PG+YT ++ Y  WI A  
Sbjct: 221 PPKDACQGDSGGPIFHKGEEGRVQ--RGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMT 278

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG3627|consensus	256		99.83
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.72
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	99.72
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	99.58
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.49
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	97.45
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	96.25
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	95.15
PF00947	127	Pico_P2A: Picornavirus core protein 2A; InterPro:	93.67
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	88.59
PF05579	297	Peptidase_S32: Equine arteritis virus serine endop	86.45
PF02907	148	Peptidase_S29: Hepatitis C virus NS3 protease; Int	85.78
PRK10898	353	serine endoprotease; Provisional	83.69
PF05580	218	Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR	81.25

>KOG3627|consensus

Probab=99.83  E-value=2.8e-20  Score=118.38  Aligned_cols=77  Identities=43%  Similarity=0.821  Sum_probs=64.5

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++.+.....+++.||| +  ....++|+|||||||++.... ++ +++||+|||...|.... |++||+|+.|.+||++
T Consensus       175 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~-~~-~~~GivS~G~~~C~~~~~P~vyt~V~~y~~WI~~  252 (256)
T KOG3627|consen  175 CRRAYGGLGTITDTMLCAGGPEGGKDACQGDSGGPLVCEDNG-RW-VLVGIVSWGSGGCGQPNYPGVYTRVSSYLDWIKE  252 (256)
T ss_pred             hcccccCccccCCCEEeeCccCCCCccccCCCCCeEEEeeCC-cE-EEEEEEEecCCCCCCCCCCeEEeEhHHhHHHHHH
Confidence            55555544467788999 6  567888999999999999854 56 99999999986688875 9999999999999999


Q ss_pred             Hhh
Q psy17086         77 RMA   79 (82)
Q Consensus        77 ~~~   79 (82)
                      .+.
T Consensus       253 ~~~  255 (256)
T KOG3627|consen  253 NIG  255 (256)
T ss_pred             Hhc
Confidence            875

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.7e-17  Score=109.13  Aligned_cols=62  Identities=44%  Similarity=0.838  Sum_probs=57.0

Q ss_pred             ee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         16 FL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        16 ~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      +| +....++|+||||||++.+..+|+  +++||+|||.+.|+... |.|||+|+.|.+||...|.
T Consensus       216 ~cag~~~~daCqGDSGGPi~~~g~~G~--vQ~GVvSwG~~~Cg~t~~~gVyT~vsny~~WI~a~~~  279 (413)
T COG5640         216 FCAGRPPKDACQGDSGGPIFHKGEEGR--VQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTN  279 (413)
T ss_pred             eecCCCCcccccCCCCCceEEeCCCcc--EEEeEEEecCCCCCCCCcceeEEehhHHHHHHHHHhc
Confidence            99 877799999999999999987776  79999999998899988 9999999999999999774

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=99.72  E-value=1.8e-17  Score=102.83  Aligned_cols=66  Identities=45%  Similarity=0.940  Sum_probs=57.1

Q ss_pred             CcCCCCeee-c-CC-CCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHH
Q psy17086          9 ISVTETKFL-V-FP-GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   77 (82)
Q Consensus         9 ~~i~~~~~C-~-~~-~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~   77 (82)
                      ..+.+.+|| . .. ..+.|.||+||||++... +++ +|+||+|++.. |.... |.+||+|+.|++||+++
T Consensus       163 ~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~-~~~-~lvGI~s~g~~-c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         163 GTITDNMLCAGGLEGGKDACQGDSGGPLVCNDN-GRG-VLVGIVSWGSG-CARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             ccCCCceEeeCCCCCCCccccCCCCCcEEEEeC-CEE-EEEEEEehhhc-cCCCCCCCEEEEcHHhhHHhhcC
Confidence            467899999 6 33 788999999999999875 677 99999999998 98744 99999999999999864

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=99.58  E-value=4.2e-15  Score=92.50  Aligned_cols=62  Identities=47%  Similarity=0.984  Sum_probs=53.6

Q ss_pred             CcCCCCeee-c-CC-CCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHH
Q psy17086          9 ISVTETKFL-V-FP-GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI   74 (82)
Q Consensus         9 ~~i~~~~~C-~-~~-~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI   74 (82)
                      ..+.+.++| + .. ....|.||+|+||+....  +| +|+||+|++.. |.... |.+|+||+.|++||
T Consensus       164 ~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~--~~-~l~Gi~s~g~~-C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      164 GAITDNMLCAGGLEGGKDACQGDSGGPLVCNDG--RW-VLVGIVSWGSG-CARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             cccCCCcEeecCCCCCCcccCCCCCCeeEEECC--CE-EEEEEEEECCC-CCCCCCCCEEEEeccccccC
Confidence            357889999 6 33 688999999999999874  66 99999999996 98554 99999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.49  E-value=8.9e-14  Score=85.73  Aligned_cols=59  Identities=49%  Similarity=1.045  Sum_probs=52.1

Q ss_pred             cCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHH
Q psy17086         10 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI   74 (82)
Q Consensus        10 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI   74 (82)
                      .+.+.++| . ....+.|.||+||||++...     +|+||.+++.. |.... |.+|+||+.|++||
T Consensus       159 ~~~~~~~c~~~~~~~~~~~g~sG~pl~~~~~-----~lvGI~s~~~~-c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  159 NLTPNMICAGSSGSGDACQGDSGGPLICNNN-----YLVGIVSFGEN-CGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             TSTTTEEEEETTSSSBGGTTTTTSEEEETTE-----EEEEEEEEESS-SSBTTSEEEEEEGGGGHHHH
T ss_pred             cccccccccccccccccccccccccccccee-----eecceeeecCC-CCCCCcCEEEEEHHHhhccC
Confidence            37889999 6 36688999999999998873     59999999976 98886 99999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=97.45  E-value=0.00036  Score=45.32  Aligned_cols=55  Identities=33%  Similarity=0.503  Sum_probs=42.3

Q ss_pred             CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHH
Q psy17086         19 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIA   76 (82)
Q Consensus        19 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~   76 (82)
                      ......|.+|+||||+... +|++ +|+||.+.+...|... ...|.+|..|.+=|=+
T Consensus       223 ~~~~~~~~~d~Gg~lv~~~-~gr~-tlIGv~~~~~~~~~~~-~~~f~~v~~~~~~IC~  277 (282)
T PF03761_consen  223 CTKQYSCKGDRGGPLVKNI-NGRW-TLIGVGASGNYECNKN-NSYFFNVSWYQDEICE  277 (282)
T ss_pred             ecccccCCCCccCeEEEEE-CCCE-EEEEEEccCCCccccc-ccEEEEHHHhhhhhcc
Confidence            4456789999999999877 4888 9999999776434332 6788999888765543

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.25  E-value=0.0038  Score=46.24  Aligned_cols=29  Identities=34%  Similarity=0.582  Sum_probs=21.8

Q ss_pred             CcCCCCceeEEEeCC-CceEEEEEEEeecCC
Q psy17086         25 CNGDSGGPLVWKNND-TRKHYLIGLVSYGTP   54 (82)
Q Consensus        25 C~gdsGgPl~~~~~~-~~~~~l~Gi~s~g~~   54 (82)
                      =.||||+||+..+.. ..| +|+|+.+.+..
T Consensus       214 ~~GDSGSPlF~YD~~~kKW-vl~Gv~~~~~~  243 (769)
T PF02395_consen  214 SPGDSGSPLFAYDKEKKKW-VLVGVLSGGNG  243 (769)
T ss_dssp             -TT-TT-EEEEEETTTTEE-EEEEEEEEECC
T ss_pred             ccCcCCCceEEEEccCCeE-EEEEEEccccc
Confidence            469999999988764 566 99999998765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=95.15  E-value=0.065  Score=35.02  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=37.4

Q ss_pred             CCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEc-CCcHHHHHHHhh
Q psy17086         21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRI-TAYLPWIIARMA   79 (82)
Q Consensus        21 ~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v-~~~~~WI~~~~~   79 (82)
                      ..+++.|+||+|+.....     +++||.+-+...-+...-.-.+|+ ..+++||++.++
T Consensus       197 ~~dT~pG~SGSpv~~~~~-----~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~~  251 (251)
T COG3591         197 DADTLPGSSGSPVLISKD-----EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK  251 (251)
T ss_pred             EecccCCCCCCceEecCc-----eEEEEEecCCCcccccccCcceEecHHHHHHHHHhhC
Confidence            467889999999998774     899999987752222223334444 447799988753

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.67  E-value=0.086  Score=31.04  Aligned_cols=34  Identities=32%  Similarity=0.486  Sum_probs=26.7

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCc
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAY   70 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~   70 (82)
                      .||-||+|.|+.      -++||++.|..     +-..|++|..+
T Consensus        89 PGdCGg~L~C~H------GViGi~Tagg~-----g~VaF~dir~~  122 (127)
T PF00947_consen   89 PGDCGGILRCKH------GVIGIVTAGGE-----GHVAFADIRDL  122 (127)
T ss_dssp             TT-TCSEEEETT------CEEEEEEEEET-----TEEEEEECCCG
T ss_pred             CCCCCceeEeCC------CeEEEEEeCCC-----ceEEEEechhh
Confidence            478999999998      48999998754     35679998876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=88.59  E-value=0.47  Score=26.20  Aligned_cols=21  Identities=33%  Similarity=0.692  Sum_probs=14.5

Q ss_pred             CCCcCCCCceeEEEeCCCceEEEEEE
Q psy17086         23 DSCNGDSGGPLVWKNNDTRKHYLIGL   48 (82)
Q Consensus        23 ~~C~gdsGgPl~~~~~~~~~~~l~Gi   48 (82)
                      ..=.|.|||||+-.+  |   .++||
T Consensus       100 ~~~~G~SGgpv~~~~--G---~vvGi  120 (120)
T PF13365_consen  100 DTRPGSSGGPVFDSD--G---RVVGI  120 (120)
T ss_dssp             S-STTTTTSEEEETT--S---EEEEE
T ss_pred             ccCCCcEeHhEECCC--C---EEEeC
Confidence            334689999998644  3   67776

...

>PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.45  E-value=0.59  Score=31.08  Aligned_cols=23  Identities=39%  Similarity=0.619  Sum_probs=16.8

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecC
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGT   53 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~   53 (82)
                      .||||+|++.++.     .|+||-+-..
T Consensus       207 ~GDSGSPVVt~dg-----~liGVHTGSn  229 (297)
T PF05579_consen  207 PGDSGSPVVTEDG-----DLIGVHTGSN  229 (297)
T ss_dssp             GGCTT-EEEETTC------EEEEEEEEE
T ss_pred             CCCCCCccCcCCC-----CEEEEEecCC
Confidence            4899999998874     7999977543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S32 (clan PA(S)). The type example is equine arteritis virus serine endopeptidase (equine arteritis virus), which is involved in processing of nidovirus polyproteins [].; GO: 0004252 serine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 3FAN_A 3FAO_A 1MBM_A.

>PF02907 Peptidase_S29: Hepatitis C virus NS3 protease; InterPro: IPR004109 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.78  E-value=0.84  Score=27.37  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=15.5

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEee
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSY   51 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~   51 (82)
                      .|.||||++|...     ..+||.-.
T Consensus       107 kGSSGgPiLC~~G-----H~vG~f~a  127 (148)
T PF02907_consen  107 KGSSGGPILCPSG-----HAVGMFRA  127 (148)
T ss_dssp             TT-TT-EEEETTS-----EEEEEEEE
T ss_pred             ecCCCCcccCCCC-----CEEEEEEE
Confidence            6899999999884     78898654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies the Hepatitis C virus NS3 protein as a serine protease which belongs to MEROPS peptidase family S29 (hepacivirin family, clan PA(S)), which has a trypsin-like fold. The non-structural (NS) protein NS3 is one of the NS proteins involved in replication of the HCV genome. The NS2 proteinase (IPR002518 from INTERPRO), a zinc-dependent enzyme, performs a single proteolytic cut to release the N terminus of NS3. The action of NS3 proteinase (NS3P), which resides in the N-terminal one-third of the NS3 protein, then yields all remaining non-structural proteins. The C-terminal two-thirds of the NS3 protein contain a helicase. The functional relationship between the proteinase and helicase domains is unknown. NS3 has a structural zinc-binding site and requires cofactor NS4. It has been suggested that the NS3 serine protease of hepatitus C is involved in cell transformation and that the ability to transform requires an active enzyme [].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0019087 transformation of host cell by virus; PDB: 2QV1_B 3LOX_C 2OBQ_C 2OC1_C 2OC0_A 3LON_A 3KNX_A 2O8M_A 2OBO_A 2OC8_A ....

>PRK10898 serine endoprotease; Provisional

Probab=83.69  E-value=2.3  Score=28.96  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=18.5

Q ss_pred             CcCCCCceeEEEeCCCceEEEEEEEeecC
Q psy17086         25 CNGDSGGPLVWKNNDTRKHYLIGLVSYGT   53 (82)
Q Consensus        25 C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~   53 (82)
                      -.|.|||||+...  |   .++||.+...
T Consensus       196 ~~GnSGGPl~n~~--G---~vvGI~~~~~  219 (353)
T PRK10898        196 NHGNSGGALVNSL--G---ELMGINTLSF  219 (353)
T ss_pred             CCCCCcceEECCC--C---eEEEEEEEEe
Confidence            4588999999665  3   7999987643

>PF05580 Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR008763 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.25  E-value=2.3  Score=27.39  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      ...-+|.||+|++...      .|+|-+++...
T Consensus       175 GGIvqGMSGSPI~qdG------KLiGAVthvf~  201 (218)
T PF05580_consen  175 GGIVQGMSGSPIIQDG------KLIGAVTHVFV  201 (218)
T ss_pred             CCEEecccCCCEEECC------EEEEEEEEEEe
Confidence            4578999999998766      89998887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S55 (SpoIVB peptidase family, clan PA(S)). The protein SpoIVB plays a key role in signalling in the final sigma-K checkpoint of Bacillus subtilis [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		2e-10
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		3e-10
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		4e-10
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		5e-10
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		2e-09
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		2e-09
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		2e-09
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		3e-09
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		3e-09
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		6e-09
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		1e-08
2any_A	241	Expression, Crystallization And The Three-Dimension		2e-08
2anw_A	241	Expression, Crystallization And Three-Dimensional S		2e-08
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		2e-08
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		3e-08
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		5e-08
2bok_A	241	Factor Xa- Cation Length = 241		5e-08
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		5e-08
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		5e-08
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		5e-08
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		5e-08
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		6e-08
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		6e-08
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		6e-08
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		6e-08
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		7e-08
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		7e-08
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		7e-08
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		7e-08
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		8e-08
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		8e-08
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		8e-08
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		9e-08
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		9e-08
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		9e-08
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		9e-08
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		9e-08
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		9e-08
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		9e-08
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		1e-07
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		1e-07
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		1e-07
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		1e-07
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		1e-07
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		1e-07
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		1e-07
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		1e-07
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-07
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		2e-07
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		3e-07
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		3e-07
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		3e-07
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		3e-07
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		4e-07
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		4e-07
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		5e-07
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		5e-07
1pfx_C	235	Porcine Factor Ixa Length = 235		5e-07
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		5e-07
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		5e-07
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		5e-07
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		5e-07
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		5e-07
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		6e-07
4gso_A	232	Structure Of Jararacussin-I Length = 232		6e-07
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		6e-07
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		6e-07
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		7e-07
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		7e-07
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		7e-07
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		7e-07
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		7e-07
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		7e-07
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		7e-07
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		7e-07
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		7e-07
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		7e-07
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		7e-07
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		8e-07
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		8e-07
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		8e-07
1lto_A	245	Human Alpha1-Tryptase Length = 245		8e-07
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		8e-07
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		8e-07
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		9e-07
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		9e-07
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		9e-07
1aut_C	250	Human Activated Protein C Length = 250		1e-06
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		1e-06
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		1e-06
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		1e-06
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		1e-06
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		1e-06
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		1e-06
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		1e-06
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		1e-06
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		1e-06
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		1e-06
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		1e-06
1kig_H	241	Bovine Factor Xa Length = 241		1e-06
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		1e-06
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		1e-06
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		1e-06
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		1e-06
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		2e-06
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		2e-06
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		2e-06
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		2e-06
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		2e-06
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		2e-06
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		2e-06
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		2e-06
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		2e-06
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		2e-06
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		2e-06
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		2e-06
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		2e-06
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		2e-06
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-06
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		2e-06
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		2e-06
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		2e-06
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		2e-06
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-06
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		2e-06
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		2e-06
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		2e-06
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		2e-06
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		2e-06
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		3e-06
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		3e-06
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		3e-06
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		3e-06
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		3e-06
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		3e-06
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		3e-06
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-06
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		4e-06
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		4e-06
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		4e-06
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		4e-06
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		5e-06
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		5e-06
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		5e-06
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		6e-06
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		6e-06
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		6e-06
2a31_A	223	Trypsin In Complex With Borate Length = 223		6e-06
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		6e-06
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		6e-06
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		6e-06
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		6e-06
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		6e-06
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		7e-06
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		7e-06
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		7e-06
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		7e-06
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		7e-06
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		7e-06
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		7e-06
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		7e-06
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		7e-06
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		7e-06
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		8e-06
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		8e-06
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		9e-06
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		9e-06
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		9e-06
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		1e-05
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		1e-05
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		1e-05
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		1e-05
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		1e-05
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-05
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		1e-05
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		1e-05
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		1e-05
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		1e-05
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		1e-05
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		1e-05
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		1e-05
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		1e-05
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		1e-05
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		1e-05
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-05
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		1e-05
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		2e-05
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		2e-05
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		2e-05
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		2e-05
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		2e-05
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		2e-05
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		2e-05
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		2e-05
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-05
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		3e-05
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		3e-05
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		3e-05
2xrc_A	565	Human Complement Factor I Length = 565		3e-05
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		3e-05
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		4e-05
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		4e-05
1dpo_A	223	Structure Of Rat Trypsin Length = 223		4e-05
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		4e-05
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		6e-05
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		8e-05
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		8e-05
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		8e-05
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		8e-05
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		8e-05
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		8e-05
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		9e-05
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		1e-04
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		1e-04
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		1e-04
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		2e-04
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		2e-04
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		2e-04
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		2e-04
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		2e-04
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		2e-04
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		2e-04
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		2e-04
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		2e-04
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		2e-04
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		2e-04
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		2e-04
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		2e-04
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		2e-04
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		2e-04
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		2e-04
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		2e-04
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		2e-04
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		2e-04
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		2e-04
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		2e-04
2hnt_F	105	Crystallographic Structure Of Human Gamma-Thrombin		2e-04
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		2e-04
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		2e-04
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		2e-04
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		2e-04
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		2e-04
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		2e-04
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		2e-04
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		2e-04
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		2e-04
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		2e-04
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		2e-04
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		2e-04
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		2e-04
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		2e-04
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		2e-04
2pks_C	102	Thrombin In Complex With Inhibitor Length = 102		2e-04
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		3e-04
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		3e-04
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		3e-04
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		3e-04
1bbr_E	109	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-04
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		3e-04
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		3e-04
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		3e-04
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		3e-04
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		3e-04
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		3e-04
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		3e-04
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		3e-04
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		4e-04
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		4e-04
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		4e-04
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		4e-04
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		4e-04
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		5e-04
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		5e-04
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		5e-04
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		5e-04
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		5e-04
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		5e-04
1kyn_B	235	Cathepsin-G Length = 235		6e-04
1au8_A	224	Human Cathepsin G Length = 224		6e-04
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		6e-04
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		7e-04
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		7e-04
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		7e-04
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		8e-04
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		8e-04
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		8e-04
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		9e-04

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 181 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 267 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 321

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 342 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 396

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           GKDSC GD+GG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 181 GKDSCRGDAGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 172 GVSSCMGDSGGPLVCKKNG--AWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 228

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
          G DSC GDSGGPLV + +      L G+VS+G+  C   +PG+Y+R+TA +PW+
Sbjct: 41 GVDSCMGDSGGPLVCQKDGV--WTLAGIVSWGSGVCSTSTPGVYSRVTALMPWV 92

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 187 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 243

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
          G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 39 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
          G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 38 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 94

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
          G DSC GDSGGPLV + +      L G+VS+G+  C   +P +Y+R+TA +PW+
Sbjct: 41 GVDSCMGDSGGPLVCQKDGV--WTLAGIVSWGSGVCSTSTPAVYSRVTALMPWV 92

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           KDSCNGDSGGPL+         YL GLVS+G   CG +G PG+YT +  +  WI
Sbjct: 170 KDSCNGDSGGPLICNG------YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWI 217

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPLV K+N   +  L+G+ S+G        PG+YT++  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLVCKHNGMWR--LVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPLV K+N   +  L+G+ S+G        PG+YT++  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLVCKHNGMWR--LVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 17  LVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIA 76
           L   G+ +C+GDSGGPLV           IG+VS+G+P C +G P +YTR+++++ WI A
Sbjct: 166 LTKRGEGACHGDSGGPLVANGAQ------IGIVSFGSP-CALGEPDVYTRVSSFVSWINA 218
Query: 77  RM 78
            +
Sbjct: 219 NL 220

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 193 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 247

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKDSC GDSGGPL    +DT   YL G+VS+G      G PG+YT ++ ++ WI A 
Sbjct: 181 GKDSCQGDSGGPLA--ASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 21  GKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           G DSC GDSGG    ++ ND  K Y  GLVS+G P+C  G+ G+YTR+  Y+ WI+  M
Sbjct: 269 GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWG-PQC--GTYGLYTRVKNYVDWIMKTM 324

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
            KDSC GDSGGPL+ +  + ++ +L GLVS+G   CG  G PGIYT++  Y  WI
Sbjct: 220 AKDSCGGDSGGPLLAERAN-QQFFLEGLVSFGA-TCGTEGWPGIYTKVGKYRDWI 272

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 567 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 621

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ +
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 78
           D+C GDSGGPLV  N+   +  L+G++S+G   CG    PG+YT++T YL WI   M
Sbjct: 210 DACQGDSGGPLVCLNDG--RMTLVGIISWGL-GCGQKDVPGVYTKVTNYLDWIRDNM 263

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GD+GGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDAGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 78
           D+C GDSGGPLV  N+   +  L+G++S+G   CG    PG+YT++T YL WI   M
Sbjct: 197 DACQGDSGGPLVCLNDG--RMTLVGIISWGL-GCGQKDVPGVYTKVTNYLDWIRDNM 250

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 23  DSCNGDSGGPLVWKNNDTRK-HYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR 77
           D+C GDSGGPLV  ++D R   YL G+VS+G        PG+YTR+TA   WI ++
Sbjct: 176 DACQGDSGGPLV--SSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSK 229

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 187 RDSCKGDSGGPLVCKVNGTWLQ--AGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           D+C GDSGGPL  + N     YL G++S+G     +  PG+YTR+  Y+ WI  R+
Sbjct: 220 DACQGDSGGPLACEKNGVA--YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           KDSC GDSGGP       T   YL G+VS+G     +G  G+YTR++ Y+ W+   M  E
Sbjct: 185 KDSCKGDSGGPHATHYRGT--WYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSE 242

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           KDSC GDSGGP       T   YL G+VS+G     +G  G+YTR++ Y+ W+   M  E
Sbjct: 185 KDSCKGDSGGPHATHYRGT--WYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSE 242

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 17  LVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWII 75
           +V  GKD+C GDSGGPL+            G+VSYG   CG G  PGIYT +  Y  WI 
Sbjct: 168 IVQGGKDTCGGDSGGPLICNGQ------FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQ 221
Query: 76  ARMA 79
             +A
Sbjct: 222 RNIA 225

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 17  LVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWII 75
           +V  GKD+C GDSGGPL+            G+VSYG   CG G  PGIYT +  Y  WI 
Sbjct: 168 IVQGGKDTCGGDSGGPLICNGQ------FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQ 221
Query: 76  ARMA 79
             +A
Sbjct: 222 RNIA 225

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
           GKDSC GDSGGPLV  +      +L GLVS+G   CG    PG+YT +  Y  WI
Sbjct: 168 GKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 2   NQNHKGDISVTETKFLVFPGK-DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IG 59
           N+    D ++TE        + DSC GDSGGPLV          L G+VS+G+  CG   
Sbjct: 155 NRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCGG------VLEGVVSWGSRVCGNRK 208
Query: 60  SPGIYTRITAYLPWIIARMA 79
            PGIYTR+ +Y  WI + +A
Sbjct: 209 KPGIYTRVASYAAWIDSVLA 228

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 215 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 271

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
           GKDSC GDSGGPLV  +      +L GLVS+G   CG    PG+YT +  Y  WI
Sbjct: 169 GKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 217

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           GKDSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GKDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAVKGKYGIYTKVSRYVNWI 228

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
           GKDSC GDSGGPLV  +      +L GLVS+G   CG    PG+YT +  Y  WI
Sbjct: 168 GKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+            G+VSYG   CG G  PGIYT +  Y  WI   +A
Sbjct: 170 GKDTCVGDSGGPLICNGQ------FQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIA 223

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 189 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 192 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 207 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 256

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 189 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           D+C GDSGGPL+ K++    + ++G+ S+G        PG+YT   +YL WI +++
Sbjct: 193 DTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           DSC GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI
Sbjct: 192 DSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           K++CNGDSGGPLV +        L GLVS+GT  CG    PG+YT++  +  WI
Sbjct: 169 KNACNGDSGGPLVCRGT------LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWI 216

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           D+C GDSGGPLV  N++     L+G++S+G        PG+YT++T YL WI   M
Sbjct: 210 DACQGDSGGPLVCMNDNHMT--LLGIISWGVGCGEKDVPGVYTKVTNYLGWIRDNM 263

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G D+C GDSGGP V +++ +R  +  L G+VS+GT       PG+YT+++ +  WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 355

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G D+C GDSGGP V +++ +R  +  L G+VS+GT       PG+YT+++ +  WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 355

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +DSC GDSGGPLV K N T      G+VS+         PGIYTR+T YL WI
Sbjct: 187 RDSCKGDSGGPLVCKVNGTWLQ--AGVVSWDEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G+DSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G+DSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           K++CNGDSGGPLV +        L GLVS+GT  CG    PG+YT++  +  WI
Sbjct: 169 KNACNGDSGGPLVCRGT------LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWI 216

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G+DSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G+DSC GDSGGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDSGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           +D+C GDSGGP+V   + T   +L+GLVS+G   CG + + G+YT+++ YL WI
Sbjct: 184 QDACEGDSGGPMVASFHGT--WFLVGLVSWGE-GCGLLHNYGVYTKVSRYLDWI 234

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
            D+C GDSGGPL  + N     YL G++S+G     +  PG+YTR+  Y+ WI  R+
Sbjct: 184 SDACQGDSGGPLACEKNGVA--YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
            D+C GDSGGPL  + N     YL G++S+G     +  PG+YTR+  Y+ WI  R+
Sbjct: 184 SDACQGDSGGPLACEKNGVA--YLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G DSC GDSGGPL+ + N+  + +L G+ S+G  EC +   PG+Y R++ +  WI
Sbjct: 179 GIDSCQGDSGGPLMCQENN--RWFLAGVTSFGY-ECALPNRPGVYARVSRFTEWI 230

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+            G+VS+G   CG G  PG+YT++  Y  WI + +A
Sbjct: 172 GKDTCGGDSGGPLICNGQ------FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           DSC GD+GGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DSCQGDAGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           D+C GDSGGPLV       +  L G+VS+G        PG+YTR++ +LPWI +    E
Sbjct: 192 DACQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEE 248

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2   NQNHKGDISVTETKFLVFPGK-DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IG 59
           N+    D ++TE        + DSC GDSGGPLV          L G+V+ G+  CG   
Sbjct: 155 NRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCGG------VLEGVVTSGSAVCGNRK 208
Query: 60  SPGIYTRITAYLPWIIARMA 79
            PGIYTR+ +Y  WI + +A
Sbjct: 209 KPGIYTRVASYAAWIDSVLA 228

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 22  KDSCNGDSGGPL----VWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIA 76
           +DSC GDSGGPL     +      K    G+VS G   CG I  PG+YT +  Y+ WI  
Sbjct: 311 QDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITD 370
Query: 77  RMA 79
            MA
Sbjct: 371 TMA 373

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GD+GGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 189 GTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GD+GGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 192 GTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GD+GGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 190 GTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 241

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  G+YT+++ +L WI
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKFGVYTKVSNFLKWI 228

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GD+GGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 191 GTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 242

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 174 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 226

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 175 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 227

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 183 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 235

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2   NQNHKGDISVTETKFLVFPGK-DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IG 59
           N+    D ++TE        + DSC GDSGGPLV          L G+V+ G+  CG   
Sbjct: 155 NRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCGG------VLEGVVTSGSRVCGNRK 208
Query: 60  SPGIYTRITAYLPWIIARMA 79
            PGIYTR+ +Y  WI + +A
Sbjct: 209 KPGIYTRVASYAAWIDSVLA 228

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 189 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 241

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2   NQNHKGDISVTETKFLVFPGK-DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IG 59
           N+    D ++TE        + DSC GDSGGPLV          L G+V+ G+  CG   
Sbjct: 162 NRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCGG------VLEGVVTSGSRVCGNRK 215
Query: 60  SPGIYTRITAYLPWIIARMA 79
            PGIYTR+ +Y  WI + +A
Sbjct: 216 KPGIYTRVASYAAWIDSVLA 235

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCAGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G+DSC GD+GGP V +   T   +L G++S+G  EC + G  GIYT+++ Y+ WI
Sbjct: 177 GRDSCQGDAGGPHVTEVEGTS--FLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
           +DSC GDSGGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + +A
Sbjct: 176 RDSCKGDSGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI
Sbjct: 188 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 239

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G D+C GDSGGP V +++ +R  +  L G+VS+GT       PG+YT+++ +  WI
Sbjct: 183 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 238

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G+       PGIYT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G+       PGIYT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 14/64 (21%)
Query: 21  GKDSCNGDSGGPL------VWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           GKD+C GDSGGPL      +W        YL G+VS+G        PG+YT  ++Y  WI
Sbjct: 186 GKDACQGDSGGPLSCPVEGLW--------YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Query: 75  IARM 78
            +++
Sbjct: 238 QSKV 241

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 14/64 (21%)
Query: 21  GKDSCNGDSGGPL------VWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           GKD+C GDSGGPL      +W        YL G+VS+G        PG+YT  ++Y  WI
Sbjct: 186 GKDACQGDSGGPLSCPVEGLW--------YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Query: 75  IARM 78
            +++
Sbjct: 238 QSKV 241

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 11  VTETKFLV-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITA 69
           +T   F     G DSC GDSGGP+V          L G+VS+G+  C    PG+YT++  
Sbjct: 156 ITSNMFCAGLEGGDSCQGDSGGPVVCSGK------LQGIVSWGS-GCAKNKPGVYTKVCN 208
Query: 70  YLPWIIARMA 79
           Y+ WI   +A
Sbjct: 209 YVSWIKQTIA 218

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           G DSC GDSGGPLV    D  K+ L G+ S+G        PG+Y R++ ++ WI   M
Sbjct: 733 GTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 14/64 (21%)
Query: 21  GKDSCNGDSGGPL------VWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           GKD+C GDSGGPL      +W        YL G+VS+G        PG+YT  ++Y  WI
Sbjct: 186 GKDACQGDSGGPLSCPVEGLW--------YLTGIVSWGDACGARNRPGVYTLASSYASWI 237
Query: 75  IARM 78
            +++
Sbjct: 238 QSKV 241

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2   NQNHKGDISVTETKFLVFPGK-DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IG 59
           N+    D ++TE        + DSC GD+GGPLV          L G+V+ G+  CG   
Sbjct: 155 NRRTHHDGAITERLMCAESNRRDSCKGDAGGPLVCGG------VLEGVVTSGSRVCGNRK 208
Query: 60  SPGIYTRITAYLPWIIARMA 79
            PGIYTR+ +Y  WI + +A
Sbjct: 209 KPGIYTRVASYAAWIDSVLA 228

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GD+GGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 189 GKDSCQGDAGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 241

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+       PG YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y  WI + M+
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTMS 221

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
           G D+C GDSGGPLV          L G+ S+G+  CG    PG+YT+I  Y  WI   M
Sbjct: 172 GADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G        PGIYT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           +D+C GDSGGP+V   + T   +L+GLVS+G   CG + + G+YT+++ YL WI
Sbjct: 184 QDACEGDSGGPMVASFHGTW--FLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWI 234

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G+D+C+ DSGGPL+            G+VS+G   CG  G PG+YT++  YL WI + +A
Sbjct: 172 GRDTCHFDSGGPLICNG------IFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSIIA 225

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFSDWLTSTMA 220

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GD GGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDXGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 177 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 229

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 173 GKDSCQGDSGGPVVCNGQ------LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 183 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 235

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGQ------LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 221

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G+       PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 188 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 240

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+          L G+ S+G   CG    PG+YT++  +  WI   MA
Sbjct: 181 GKDTCKGDSGGPLICDG------VLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTMA 234

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           D+C GDSGGPL+ ++       ++G+ S+G        PG+YT    YL WI +++
Sbjct: 193 DTCQGDSGGPLMCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIASKI 248

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GD+GGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDAGGPVVCSGK------LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNGE------LQGVVSWGYGCAEPGNPGVYAKVCIFNNWLTSTMA 220

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
          GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 44 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 96

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
          GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 44 GKDSCQGDSGGPVVCNGQ------LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 96

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G+       PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTIA 221

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G DSC GDSGGPL+ + N+  +  L G+ S+G  +C +   PG+Y R+  +  WI
Sbjct: 179 GVDSCQGDSGGPLMCQENN--RWLLAGVTSFGY-QCALPNRPGVYARVPRFTEWI 230

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +DSC GDSGGPL  K+  +    L+G+VS+G   C  G PG+Y+R+  +  WI
Sbjct: 181 RDSCQGDSGGPLSVKDG-SGIFSLVGIVSWGI-GCASGYPGVYSRVGFHAGWI 231

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 177 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G        PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 177 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GD+GGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDAGGPVVCSGK------LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 179 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 231

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G        PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCSGK------LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 191 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 243

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GD+GGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDAGGPVVCNGQ------LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 221

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G PG YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWI 250

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GD+GGP+V          L G+VS+G+       PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDAGGPVVCSGK------LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 11  VTETKFLVF--PGK-DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRI 67
           +T   F  +   GK DSC GDSGGP+V          L G+VS+G+       PG+YT++
Sbjct: 156 ITSNMFCAYGLEGKGDSCQGDSGGPVVCSGK------LQGIVSWGSGCQAKNKPGVYTKV 209
Query: 68  TAYLPWIIARMA 79
             Y+ WI   +A
Sbjct: 210 CNYVSWIKQTIA 221

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP-GIYTRITAYLPWI 74
           GKD+C GDSGGP+V  N +  + YL+G VS+G  +CG     G+Y+ I     WI
Sbjct: 190 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGD-DCGKKDRYGVYSYIHHNKDWI 243

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP-GIYTRITAYLPWI 74
           GKD+C GDSGGP+V  N +  + YL+G VS+G  +CG     G+Y+ I     WI
Sbjct: 345 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGD-DCGKKDRYGVYSYIHHNKDWI 398

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPL     D R  +  G+VS+G        PG+YTR+  +  WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGRI-FQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPL     D R  +  G+VS+G        PG+YTR+  +  WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGRI-FQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GD+GGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 179 GKDSCQGDAGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 231

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPL     D R  +  G+VS+G        PG+YTR+  +  WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGRI-FQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GD+GGP+V          L G+VS+G        PG YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDAGGPVVCSGK------LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGSPGIYTRITAYLPWI 74
           GK  C GDSGGP V  +    K+ LIG+VS+ +   C  G P  ++R+T+Y+ WI
Sbjct: 172 GKSPCFGDSGGPFVLSD----KNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GD+GGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDAGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 23  DSCNGDSGGPLVW--KNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
           D+C GDSGGPLV    NN T   Y+ G+VS+G   CG    PG+YT++  Y  WI
Sbjct: 501 DACKGDSGGPLVCMDANNVT---YVWGVVSWG-ENCGKPEFPGVYTKVANYFDWI 551

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G+DSC GDSGGP+V   +      L GLVS+G   C     PG+YT +  +  WI
Sbjct: 171 GRDSCQGDSGGPVVCNGS------LQGLVSWGDYPCARPNRPGVYTNLCKFTKWI 219

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+V +G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVEWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+V +G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCNGE------LQGIVKWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GD GGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDCGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC G+SGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 177 GKDSCQGNSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 14  TKFLVFPG-----KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRI 67
           TKF++  G     K +C+GDSGGPLV          L G+ S+G+  C +   P +YT++
Sbjct: 169 TKFMLCAGRWTGGKSTCSGDSGGPLVCNG------VLQGITSWGSEPCALPERPSLYTKV 222
Query: 68  TAYLPWI 74
             Y  WI
Sbjct: 223 VHYRKWI 229

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 15/59 (25%)
Query: 21  GKDSCNGDSGGPLV----WKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
           GKD+C GDSGGPL+    W+          G+ S+G   CG  + P IYT++  YL WI
Sbjct: 96  GKDTCMGDSGGPLICNGMWQ----------GITSWGHTPCGSANKPSIYTKLIFYLDWI 144

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 24  SCNGDSGGPLVWKNNDTRKHYLIG-LVSYGTPECGIGSPGIYTRITAYLPWI 74
           +CNGDSGGPL   +  TR   +   +VS G   C    P +YTR++AYL WI
Sbjct: 186 ACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 2   NQNHKGDISVTETKFLVFP---GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI 58
           +Q+H+G +++ E++        G   C GD GGPLV + +  R   ++G++  G      
Sbjct: 149 SQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR--MVLGVIVPGRGCAIP 206
Query: 59  GSPGIYTRITAYLPWI 74
             PGI+ R+  Y  WI
Sbjct: 207 NRPGIFVRVAYYAKWI 222

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 2   NQNHKGDISVTETKFLVFP---GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI 58
           +Q+H+G +++ E++        G   C GD GGPLV + +  R   ++G++  G      
Sbjct: 149 SQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR--MVLGVIVPGRGCAIP 206
Query: 59  GSPGIYTRITAYLPWI 74
             PGI+ R+  Y  WI
Sbjct: 207 NRPGIFVRVAYYAKWI 222

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWI 250

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GK SC GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKSSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 5   HKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGI 63
           +KG  + T    ++  GKD+C GDSGGPL+            G++S G   C     PGI
Sbjct: 153 YKGLAATTLCAGILEGGKDTCKGDSGGPLICNGQ------FQGILSVGGNPCAQPRKPGI 206
Query: 64  YTRITAYLPWI 74
           YT++  Y  WI
Sbjct: 207 YTKVFDYTDWI 217

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWI 74
           GK +CNGDSGGPL +           G+ S+G    C  G P  +TR+T +L WI
Sbjct: 170 GKGTCNGDSGGPLNYNG------LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC  DSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQRDSGGPVVCNGQ------LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRIT-AYLPWIIARM 78
           KDSC GD+GGPL+ K        +   +  G  ECG+ + PGIYT +T  Y  WI + +
Sbjct: 183 KDSCKGDAGGPLICKG-------VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 9   ISVTETKFLVF----PGK--DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPG 62
           I +T+  F  +     GK  D+C GDSGGP V K+    + Y +G+VS+G      G  G
Sbjct: 183 IRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYG 242
Query: 63  IYTRITAYLPWI 74
            YT +     WI
Sbjct: 243 FYTHVFRLKKWI 254

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWI 250

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 15  KFLVFPGKD----SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRIT 68
           K +V  G D    +CNGDSGGPL  +  +     + G+VS+G+   C     P +YTR++
Sbjct: 169 KTMVCAGGDGVISACNGDSGGPLNCQLENGSWE-VFGIVSFGSRRGCNTRKKPVVYTRVS 227
Query: 69  AYLPWIIARM 78
           AY+ WI  +M
Sbjct: 228 AYIDWINEKM 237

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 1   MNQNHKGDISVTETKFLVFPG-----KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE 55
           M++    D    E KF V  G     + +  GDSGGPL+            G+VSYG P+
Sbjct: 149 MDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAGVAH------GIVSYGHPD 202
Query: 56  CGIGSPGIYTRITAYLPWIIA 76
                P I+TR++ Y+PWI A
Sbjct: 203 AK--PPAIFTRVSTYVPWINA 221

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWI 250

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G D+C GDSGGP+  K+N   +   +G+VS+G      G PG+YT ++ +   I
Sbjct: 171 GVDTCQGDSGGPMFRKDN-ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAI 223

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWI 250

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 235 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 286

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWI 250

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 248 DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 299

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 235 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 286

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 229 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 192 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 243

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 229 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 229 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 229 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 231 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 282

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWI 250

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 228 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 279

>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin Length = 105

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
          D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 45 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 96

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 231 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 282

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWI 250

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 364 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 415

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 193 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 244

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 192 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 243

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 190 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 241

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor Length = 102

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
          D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 45 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 96

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+          L G+ S+G   CG    P +  R+ +Y+ WI   +A
Sbjct: 182 GKDTCVGDSGGPLMCDG------VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIA 76
           G D+C GDSGGP+  K+N   +   +G+VS+G      G PG+YT ++ +   I +
Sbjct: 164 GVDTCQGDSGGPMFRKDN-ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G D+C GDSGGP+  K+N   +   +G+VS+G      G PG+YT ++ +   I
Sbjct: 164 GVDTCQGDSGGPMFRKDN-ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAI 216

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 192 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 243

>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 109

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 9   ISVTETKFLV--FPGK----DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPG 62
           I +T+  F     PG+    D+C GDSGGP V K+    + Y +G+VS+G      G  G
Sbjct: 29  IRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYG 88
Query: 63  IYTRITAYLPWI 74
            YT +     WI
Sbjct: 89  FYTHVFRLKKWI 100

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC  D+GGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQRDAGGPVVCNGQ------LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
           GKD+C  DSGGPL+          L G  SYG   CG  G P IYT +  +  WI   M
Sbjct: 181 GKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           +D+C GDSGG    ++ +T +    G+VS+G   C  G  G YT++  Y+ WI   M  E
Sbjct: 184 QDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSRGY-GFYTKVLNYVDWIKKEMEEE 241

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC  D+GGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQRDAGGPVVCNGQ------LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+Y ++     W+   MA
Sbjct: 168 GKDSCQGDSGGPVVCNG------VLQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTMA 220

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE 81
           +D+C GDSGG    ++ +T +    G+VS+G   C  G  G YT++  Y+ WI   M  E
Sbjct: 341 QDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSRGY-GFYTKVLNYVDWIKKEMEEE 398

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWIIARMA 79
           G+D+C+GDSGGPL+          + G+V+ G+  CG    P +YT++  Y  WI + +A
Sbjct: 172 GRDTCHGDSGGPLICNGE------MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 248 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 299

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 230 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 281

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 200 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 251

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           K+S +GDSGGPLV            G+VSYG  +    +P +YTRI+++L WI + M
Sbjct: 175 KNSFSGDSGGPLVCNG------VAQGIVSYGRNDGT--TPDVYTRISSFLSWIHSTM 223

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 10/60 (16%)
Query: 24  SCNGDSGGPLVWKNN---DTRKHYLIGLVSYGTP-ECG-IGSPGIYTRITAYLPWIIARM 78
           +CNGDSGGPL  + +   D R     G+VS+G+   C     P ++TR++AY+ WI  ++
Sbjct: 195 ACNGDSGGPLNCQADGQWDVR-----GIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIA 76
           G D C GDSGGP+  K+N   +   +G+VS+G      G PG+YT ++ +   I +
Sbjct: 164 GVDPCQGDSGGPMFRKDN-ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GD+GGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWI 250

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           K +  GDSGGPL+  N         G+VSYG    G+  P ++TR++++LPWI   M
Sbjct: 174 KAAFKGDSGGPLLCNN------VAHGIVSYGK-SSGV-PPEVFTRVSSFLPWIRTTM 222

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           K +  GDSGGPL+  N         G+VSYG    G+  P ++TR++++LPWI   M
Sbjct: 174 KAAFKGDSGGPLLCNN------VAHGIVSYGKSS-GV-PPEVFTRVSSFLPWIRTTM 222

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C GDSGGP V K+    + Y +G+VS G      G  G YT +     WI
Sbjct: 199 DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWI 250

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GK SC GDSGGP+V          L G+VS+G       +P +YT++  Y+ WI   +A
Sbjct: 169 GKGSCQGDSGGPVVCNGE------LQGIVSWGYGCALPDNPDVYTKVCNYVDWIQDTIA 221

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           GKD+C GDSGGPL+            G+ S+G   C     P  YT++  +L WI
Sbjct: 176 GKDTCKGDSGGPLICNGQ------FQGIASWGDDPCAQPHKPAAYTKVFDHLDWI 224

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 17/72 (23%)
Query: 7   GDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTR 66
           GD   T+T F          GDSGGPLV K+         G++SYG  +     PG+Y +
Sbjct: 169 GDPKKTQTGF---------KGDSGGPLVCKDVAQ------GILSYGNKKGT--PPGVYIK 211
Query: 67  ITAYLPWIIARM 78
           ++ +LPWI   M
Sbjct: 212 VSHFLPWIKRTM 223

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 17/72 (23%)
Query: 7   GDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTR 66
           GD   T+T F          GDSGGPLV K+         G++SYG  +     PG+Y +
Sbjct: 169 GDPKKTQTGF---------KGDSGGPLVCKDVAQ------GILSYGNKKGT--PPGVYIK 211
Query: 67  ITAYLPWIIARM 78
           ++ +LPWI   M
Sbjct: 212 VSHFLPWIKRTM 223

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           D+C  DSGGP V K+    + Y +G+VS+G      G  G YT +     WI
Sbjct: 199 DACEADSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGG    ++ +T +    G+VS+G   C  G  G YT++  Y+ WI   M
Sbjct: 273 QDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CSRGY-GFYTKVLNYVDWIKKEM 327

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           +D+C GDSGGP+  K+N   +   +G+VS+G      G  G+YT ++ +   I
Sbjct: 171 EDTCQGDSGGPMFRKDN-ADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAI 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	8e-24
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	1e-23
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	2e-23
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	9e-23
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	4e-22
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	8e-22
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	4e-21
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	5e-21
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	6e-21
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	6e-21
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	7e-21
1md8_A	329	C1R complement serine protease; innate immunity, a	1e-20
1gpz_A	399	Complement C1R component; hydrolase, activation, i	1e-20
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	1e-20
1elv_A	333	Complement C1S component; trypsin-like serin prote	2e-20
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	3e-20
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	3e-20
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	3e-20
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	8e-20
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	8e-20
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	9e-20
1aut_C	250	Activated protein C; serine proteinase, plasma cal	1e-19
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	1e-19
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	1e-19
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	1e-19
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	1e-19
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	1e-19
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	1e-19
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	2e-19
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	2e-19
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	2e-19
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	2e-19
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	2e-19
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	2e-19
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	3e-19
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	4e-19
1a7s_A	225	Heparin binding protein; serine protease homolog,	4e-19
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	4e-19
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	4e-19
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	4e-19
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	4e-19
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	5e-19
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	5e-19
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	5e-19
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	5e-19
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	5e-19
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	5e-19
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	6e-19
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	6e-19
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	7e-19
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	7e-19
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	7e-19
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	8e-19
2xrc_A	565	Human complement factor I; immune system, hydrolas	9e-19
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	9e-19
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	9e-19
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	9e-19
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	1e-18
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	1e-18
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	1e-18
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	1e-18
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	1e-18
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	2e-18
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	2e-18
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	2e-18
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	2e-18
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	3e-18
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	3e-18
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	3e-18
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	3e-18
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	3e-18
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	4e-18
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	6e-18
2aiq_A	231	Protein C activator; snake venom serine proteinase	7e-18
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	7e-18
3hrz_D	741	Complement factor B; serine protease, glycosilated	8e-18
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	1e-17
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	1e-17
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	1e-17
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	1e-17
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	1e-17
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	1e-17
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	1e-17
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	1e-17
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	2e-17
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	2e-17
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	2e-17
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-17
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	3e-17
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	9e-17
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	3e-15
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	1e-04
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	2e-04
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	3e-04
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	4e-04
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	5e-04
1hpg_A	187	Glutamic acid specific protease; serine protease,	7e-04
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	9e-04

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score = 89.7 bits (223), Expect = 8e-24
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
            KDSC GDSGGPL+ +  + +  +L GLVS+G   CG  G PGIYT++  Y  WI   +
Sbjct: 220 AKDSCGGDSGGPLLAERANQQ-FFLEGLVSFG-ATCGTEGWPGIYTKVGKYRDWIEGNI 276

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score = 88.5 bits (220), Expect = 1e-23
 Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI   ++
Sbjct: 181 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 90.3 bits (224), Expect = 2e-23
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKH----YLIGLVSYGTPECGI-GSPGIYTRITAYLPWII 75
            +DSC GDSGGPL        ++       G+VS G   CG    PG+YT +  Y+ WI 
Sbjct: 310 LQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWIT 369

Query: 76  ARMA 79
             MA
Sbjct: 370 DTMA 373

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 88.3 bits (219), Expect = 9e-23
 Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI   ++
Sbjct: 342 GKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 84.2 bits (209), Expect = 4e-22
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
             +DSC GDSGGPL  K+       L+G+VS+G   C  G PG+Y+R+  +  WI   + 
Sbjct: 179 TDRDSCQGDSGGPLSVKDGSGI-FSLVGIVSWGI-GCASGYPGVYSRVGFHAGWITDTIT 236

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score = 83.4 bits (207), Expect = 8e-22
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 7/59 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           G+ +C+GDSGGPLV           IG+VS+G+P C +G P +YTR+++++ WI A + 
Sbjct: 170 GEGACHGDSGGPLVANG------AQIGIVSFGSP-CALGEPDVYTRVSSFVSWINANLK 221

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 81.9 bits (203), Expect = 4e-21
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
            +D+C GDSGGP V +  DT  +++ G+VS+G   C   G  GIYT++TA+L WI   M 
Sbjct: 177 QEDACQGDSGGPHVTRFKDT--YFVTGIVSWGE-GCARKGKYGIYTKVTAFLKWIDRSMK 233

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 81.5 bits (202), Expect = 5e-21
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 80
            +D+C GDSGG    ++ +T +    G+VS+G   C     G YT++  Y+ WI   M  
Sbjct: 183 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI-GCS-RGYGFYTKVLNYVDWIKKEMEE 240

Query: 81  E 81
           E
Sbjct: 241 E 241

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score = 81.6 bits (202), Expect = 6e-21
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V  N +  + YL+G VS+G  +CG     G+Y+ I     WI     
Sbjct: 190 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGD-DCGKKDRYGVYSYIHHNKDWIQRVTG 248

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 81.1 bits (201), Expect = 6e-21
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM 78
             +DSC GD+GGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + +
Sbjct: 174 NRRDSCKGDAGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227

Query: 79  A 79
           A
Sbjct: 228 A 228

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 81.5 bits (202), Expect = 7e-21
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 79
            +  C GDSGGPLV          L G++S+ +  C     P + T +  Y+ WI     
Sbjct: 174 DQAPCKGDSGGPLVCGK----GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG 229

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score = 82.1 bits (203), Expect = 1e-20
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
            +D+C GDSGG    ++ +T +    G+VS+G   C     G YT++  Y+ WI   M 
Sbjct: 272 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWG-IGCS-RGYGFYTKVLNYVDWIKKEME 328

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score = 82.9 bits (205), Expect = 1e-20
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 80
            +D+C GDSGG    ++ +T +    G+VS+G   C     G YT++  Y+ WI   M  
Sbjct: 340 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWG-IGCS-RGYGFYTKVLNYVDWIKKEMEE 397

Query: 81  E 81
           E
Sbjct: 398 E 398

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score = 77.2 bits (191), Expect = 1e-20
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
          G  SC GDSGGPLV K N      L+G+VS+G+  C   +PG+Y R+TA + W+   +A
Sbjct: 39 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 81.3 bits (201), Expect = 2e-20
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLV-WKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           G DSC GDSGG       ND  K Y  GLVS+G P+C  G+ G+YTR+  Y+ WI+  M 
Sbjct: 269 GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWG-PQC--GTYGLYTRVKNYVDWIMKTMQ 325

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 79.1 bits (196), Expect = 3e-20
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
            +D+C GDSGGP+  K+N       +G+VS+G   C   G  G+YT ++ +   I +   
Sbjct: 165 QEDTCQGDSGGPMFRKDNADE-WVQVGIVSWGE-GCARKGKYGVYTEVSTFASAIASAAR 222

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 79.5 bits (197), Expect = 3e-20
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
           G DSC GDSGGPL+ + N+    +L G+ S+G  EC     PG+Y R++ +  WI + +
Sbjct: 179 GIDSCQGDSGGPLMCQENNR--WFLAGVTSFGY-ECALPNRPGVYARVSRFTEWIQSFL 234

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score = 79.2 bits (196), Expect = 3e-20
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY 80
           G    +GD+G P V ++       L+G+ +Y       G+P ++T++ +Y+ WI   +  
Sbjct: 175 GVSLESGDAGDPTVQQD------TLVGVAAYFPK-RPEGAPEVFTKVGSYVSWIQDIIKK 227

Query: 81  E 81
           +
Sbjct: 228 K 228

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 78.8 bits (195), Expect = 8e-20
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
            KDSC GDSGGP       T   YL G+VS+G   C  +G  G+YTR++ Y+ W+   M 
Sbjct: 184 SKDSCKGDSGGPHATHYRGT--WYLTGIVSWGQ-GCATVGHFGVYTRVSQYIEWLQKLMR 240

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 78.4 bits (194), Expect = 8e-20
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPLV K+N      L+G+ S+G   C     PG+YT++  Y+ WI+ +  
Sbjct: 180 GKDACKGDSGGPLVCKHNGM--WRLVGITSWGE-GCARREQPGVYTKVAEYMDWILEKTQ 236

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 78.4 bits (194), Expect = 9e-20
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
           G+DSC GDSGGP V +   T   +L G++S+G  EC   G  GIYT+++ Y+ WI  + 
Sbjct: 177 GRDSCQGDSGGPHVTEVEGT--SFLTGIISWGE-ECAMKGKYGIYTKVSRYVNWIKEKT 232

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 78.5 bits (194), Expect = 1e-19
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
            +D+C GDSGGP+V   + T   +L+GLVS+G   CG+  + G+YT+++ YL WI   + 
Sbjct: 183 RQDACEGDSGGPMVASFHGT--WFLVGLVSWGE-GCGLLHNYGVYTKVSRYLDWIHGHIR 239

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 79.0 bits (195), Expect = 1e-19
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             D+C GDSGGPL+ K++    + ++G+ S+G   C     PG+YT   +YL WI +++ 
Sbjct: 191 KIDTCQGDSGGPLMCKDSAENSYVVVGITSWGV-GCARAKRPGVYTSTWSYLNWIASKIG 249

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 78.0 bits (193), Expect = 1e-19
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G   C     PG+YT +  Y+ WI+ +  
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGE-GCAQRERPGVYTNVVEYVDWILEKTQ 236

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 78.5 bits (194), Expect = 1e-19
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             D+C GDSGGP V K+    + Y +G+VS+G   C   G  G YT +     WI   + 
Sbjct: 197 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 255

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 79.9 bits (197), Expect = 1e-19
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL  K+N+    +L+G+ S+G   C     PG+YT +  Y+ WI+ +  
Sbjct: 567 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGE-GCAQRERPGVYTNVVEYVDWILEKTQ 623

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 77.6 bits (192), Expect = 1e-19
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
               C GDSG PLV          + G+ S+    C  G  P  +  +  ++ WI
Sbjct: 165 QAGVCFGDSGSPLVCNG------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 78.6 bits (194), Expect = 1e-19
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             D+C GDSGGP V K+    + Y +G+VS+G   C   G  G YT +     WI   + 
Sbjct: 227 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 285

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 77.2 bits (191), Expect = 2e-19
 Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGPLV         +L GLVS+G   CG    PG+YT +  Y  WI   + 
Sbjct: 168 GKDSCQGDSGGPLV------CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 77.2 bits (191), Expect = 2e-19
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
               C GDSGGPL+          + G+ S+    C     P  +TR+  Y+ WI
Sbjct: 168 KAGICFGDSGGPLICDG------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWI 216

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
           GKDSC GDSGGPL   +  +   YL G+VS+G   C   G PG+YT ++ ++ WI A  
Sbjct: 181 GKDSCQGDSGGPLAASDTGS--TYLAGIVSWGY-GCARPGYPGVYTEVSYHVDWIKANA 236

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+          L G+ S+G   CG    P +  R+ +Y+ WI   +A
Sbjct: 182 GKDTCVGDSGGPLMCDG------VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G DSC GDSGGPL     D R  +  G+VS+G   C     PG+YTR+  +  WI     
Sbjct: 183 GVDSCQGDSGGPLSSVEADGR-IFQAGVVSWGD-GCAQRNKPGVYTRLPLFRDWIKENTG 240

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 76.9 bits (190), Expect = 3e-19
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             D+C GDSGGPL  + N     YL G++S+G   CG    PG+YTR+  Y+ WI  R+ 
Sbjct: 183 KSDACQGDSGGPLACEKNGV--AYLYGIISWGD-GCGRLHKPGVYTRVANYVDWINDRIR 239

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 77.4 bits (191), Expect = 4e-19
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             D+C GDSGGPL  + N     YL G++S+G   CG    PG+YTR+  Y+ WI  R+ 
Sbjct: 218 KSDACQGDSGGPLACEKNGV--AYLYGIISWGD-GCGRLHKPGVYTRVANYVDWINDRIR 274

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 76.4 bits (189), Expect = 4e-19
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
               CNGD G PLV +          G+ S+    CG G P  +TR+  +  WI
Sbjct: 167 RGGICNGDGGTPLVCEG------LAHGVASFSLGPCGRG-PDFFTRVALFRDWI 213

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 76.4 bits (189), Expect = 4e-19
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
            KDSCNGDSGGPL+         YL GLVS+G   CG  G PG+YT +  +  WI   + 
Sbjct: 169 QKDSCNGDSGGPLICNG------YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score = 78.3 bits (193), Expect = 4e-19
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHY-LIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 77
            GKD+C GD G PL   +      Y  +G+V++G   CG    PG+Y  +  +  WI   
Sbjct: 323 QGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGI-GCGDENVPGVYANVAHFRNWIDQE 381

Query: 78  MA 79
           M 
Sbjct: 382 MQ 383

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 76.9 bits (190), Expect = 4e-19
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             DSC GDSGGPLV          L G+VS+G   C +   PG+YTR++ +LPWI +   
Sbjct: 190 KTDSCQGDSGGPLVCSLQGR--MTLTGIVSWGR-GCALKDKPGVYTRVSHFLPWIRSHTK 246

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 76.4 bits (189), Expect = 4e-19
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           G D+C GDSGGPLV          L G+ S+G+  CG    PG+YT+I  Y  WI
Sbjct: 172 GADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWI 220

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 76.5 bits (189), Expect = 5e-19
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
             D+C GDSGGPLV  +      YL G+VS+G  EC     PG+YTR+TA   WI ++ 
Sbjct: 174 KTDACQGDSGGPLVSSDARDI-WYLAGIVSWGD-ECAKPNKPGVYTRVTALRDWITSKT 230

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 78.4 bits (193), Expect = 5e-19
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG---------IGSPGIYTRITAY 70
             ++C GDSGGPL+           +G++S+G  + C            +   +  +   
Sbjct: 424 DPNTCRGDSGGPLIVHKRSR--FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 481

Query: 71  LPWIIARMAYEV 82
           LPW+  ++  E 
Sbjct: 482 LPWLKEKLQDED 493

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 76.0 bits (188), Expect = 5e-19
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
           GK +CNGDSGGPL +           G+ S+G       G P  +TR+T +L WI  +  
Sbjct: 170 GKGTCNGDSGGPLNYNG------LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTG 223

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 76.5 bits (189), Expect = 5e-19
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
           G DSC GD+GGPLV    D   + L G+ S+G   C     PG+Y R++ ++ WI   M 
Sbjct: 189 GTDSCQGDAGGPLVCFEKDK--YILQGVTSWGL-GCARPNKPGVYVRVSRFVTWIEGVMR 245

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score = 76.5 bits (189), Expect = 5e-19
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
                 GD+G P V          L+G+ SY +       P ++ R+  Y+  I   ++
Sbjct: 178 ETYIGYGDAGDPAVQNG------TLVGVASYISS-MPSEFPSVFLRVGYYVLDIKDIIS 229

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 76.1 bits (188), Expect = 5e-19
 Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C  DSGGPL+          L G  SYG   CG  G P IYT +  +  WI   M 
Sbjct: 181 GKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 76.6 bits (189), Expect = 6e-19
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL          YL G+VS+G   CG    PG+YT  ++Y  WI +++ 
Sbjct: 186 GKDACQGDSGGPLSCPVEGL--WYLTGIVSWGD-ACGARNRPGVYTLASSYASWIQSKVT 242

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 76.5 bits (189), Expect = 6e-19
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECG-IGSPGIYTRITAYLPWIIARM 78
              +CNGDSGGPL  + +      + G+VS+G+   C     P ++TR++AY+ WI  ++
Sbjct: 192 VISACNGDSGGPLNCQADGQ--WDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 76.1 bits (188), Expect = 7e-19
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG-IGSPGIYTRITAYLPWIIARM 78
            +  CNGDSGGPL     D     + G+ S+ +   C  I  P ++TR++A++ WI   +
Sbjct: 179 TRSGCNGDSGGPLNCPAADGS-WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237

Query: 79  A 79
           A
Sbjct: 238 A 238

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 76.1 bits (188), Expect = 7e-19
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GK +C+GDSGGPLV          L G+ S+G+  C +   P +YT++  Y  WI   + 
Sbjct: 181 GKSTCSGDSGGPLVCNG------VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 76.1 bits (188), Expect = 7e-19
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G  +C  DSGGPL+          L G+ S+G   CG    P +YT++  +  WI   MA
Sbjct: 184 GSYTCEHDSGGPLICDG------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 75.7 bits (187), Expect = 8e-19
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+          L G+ S G   C    +P IY ++  +  WI   M 
Sbjct: 179 GKDTCAGDSGGPLICDG------VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 77.7 bits (191), Expect = 9e-19
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
             D+C GDSGGPLV  + +    Y+ G+VS+G   CG    PG+YT++  Y  WI   +
Sbjct: 499 SIDACKGDSGGPLVCMDANNV-TYVWGVVSWGE-NCGKPEFPGVYTKVANYFDWISYHV 555

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 75.7 bits (187), Expect = 9e-19
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G   C GD GGPLV + +      ++G++  G   C I   PGI+ R+  Y  WI   + 
Sbjct: 171 GSGPCEGDYGGPLVCEQHKM--RMVLGVIVPGR-GCAIPNRPGIFVRVAYYAKWIHKIIL 227

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 75.7 bits (187), Expect = 9e-19
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWI 74
           GK  C GDSGGP V  + +     LIG+VS+ +   C  G P  ++R+T+Y+ WI
Sbjct: 172 GKSPCFGDSGGPFVLSDKNL----LIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 75.2 bits (186), Expect = 9e-19
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
            K +  GDSGGPL+  N         G+VSYG    G+  P ++TR++++LPWI   M 
Sbjct: 173 RKAAFKGDSGGPLLCNN------VAHGIVSYGKS-SGV-PPEVFTRVSSFLPWIRTTMR 223

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 77.6 bits (191), Expect = 1e-18
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
             D+C GDSGGP V K+    + Y +G+VS+G   C   G  G YT +     WI   + 
Sbjct: 362 RGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE-GCDRDGKYGFYTHVFRLKKWIQKVID 420

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 75.3 bits (186), Expect = 1e-18
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
               C GDSGG L+            G+ S+G  EC       ++T++  +  WI   + 
Sbjct: 181 SGSICLGDSGGALICDG------VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 75.7 bits (187), Expect = 1e-18
 Identities = 30/60 (50%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
            +DSC GDSGGPLV K N T      G+VS+G   C     PGIYTR+T YL WI   + 
Sbjct: 186 QRDSCQGDSGGPLVCKVNGT--WLQAGVVSWGE-GCAQPNRPGIYTRVTYYLDWIHHYVP 242

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 75.3 bits (186), Expect = 1e-18
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 78
              SCNGDSGGPL  +  + +   + G+VS+G+   C     P ++TR++ Y+ WI + +
Sbjct: 180 IISSCNGDSGGPLNCQGANGQ-WQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238

Query: 79  A 79
           A
Sbjct: 239 A 239

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 74.9 bits (185), Expect = 1e-18
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G+D+C+GDSGGPL+          + G+V+ G+  CG    P +YT++  Y  WI + +A
Sbjct: 172 GRDTCHGDSGGPLICNG------EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 75.3 bits (186), Expect = 2e-18
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 78
            +  C GDSGGPL    N    + + G+ S+ +   C +   P ++TR++AY+ WI   +
Sbjct: 180 VRSGCQGDSGGPLHCLVNGQ--YAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

Query: 79  A 79
           A
Sbjct: 238 A 238

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 76.3 bits (188), Expect = 2e-18
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 77
           G D+C GDSGGP V +++ +R  +  L G+VS+GT  C +   PG+YT+++ +  WI   
Sbjct: 300 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGT-GCALAQKPGVYTKVSDFREWIFQA 358

Query: 78  MA 79
           + 
Sbjct: 359 IK 360

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 74.5 bits (184), Expect = 2e-18
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 11/62 (17%)

Query: 21  GKDSCNGDSGGPLV--WKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 77
            K++CNGDSGGPLV            L GLVS+GT  CG    PG+YT++  +  WI   
Sbjct: 168 KKNACNGDSGGPLVCRG--------TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219

Query: 78  MA 79
           M 
Sbjct: 220 MK 221

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 74.9 bits (185), Expect = 2e-18
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G  SC GDSGGPLV K N      L+G+VS+G+       +PG+Y R+TA + W+   +A
Sbjct: 187 GVSSCMGDSGGPLVCKKNGA--WTLVGIVSWGS-STCSTSTPGVYARVTALVNWVQQTLA 243

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 74.6 bits (184), Expect = 3e-18
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
              +C GD GGPL    +++    L G++      C     P ++TR++ ++ WI   M
Sbjct: 170 PVGACEGDYGGPLACFTHNS--WVLEGIIIPNR-VCARSRWPAVFTRVSVFVDWIHKVM 225

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 74.6 bits (184), Expect = 3e-18
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM 78
              D+C GDSGGPLV  N+      L+G++S+G   CG    PG+YT++T YL WI   M
Sbjct: 194 NLHDACQGDSGGPLVCLNDGR--MTLVGIISWGL-GCGQKDVPGVYTKVTNYLDWIRDNM 250

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 74.6 bits (184), Expect = 3e-18
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 9/59 (15%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-----SPGIYTRITAYLPWI 74
              +CNGDSGGPL   +  T    ++G+ S+     G+G      P +YTR++AYL WI
Sbjct: 183 NTGACNGDSGGPLNCPDGGT---RVVGVTSWVVS-SGLGACLPDYPSVYTRVSAYLGWI 237

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 74.1 bits (183), Expect = 3e-18
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G+DSC GDSGGP+V          L GLVS+G   C     PG+YT +  +  WI   + 
Sbjct: 171 GRDSCQGDSGGPVVCNG------SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 75.1 bits (185), Expect = 3e-18
 Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
              + +   G  +  ++  +   +L G++       G      + T+++ Y  W    M 
Sbjct: 221 SVAAMHWMDGSVVTREHRGS--WFLTGVLGSQ--PVGGQAHMVLVTKVSRYSLWFKQIMN 276

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 74.1 bits (183), Expect = 4e-18
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+            G+VS+G   CG    PG+YT++  Y  WI + +A
Sbjct: 172 GKDTCGGDSGGPLICNG------QFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 74.7 bits (184), Expect = 6e-18
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARM 78
              + +   G  +  ++  +   +L G++       G      + T+++ Y  W    M
Sbjct: 262 SVAAMHWMDGSVVTREHRGS--WFLTGVLGSQ--PVGGQAHMVLVTKVSRYSLWFKQIM 316

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 73.3 bits (181), Expect = 7e-18
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+            G++S G   C     PGIYT++  Y  WI + ++
Sbjct: 169 GKDTCKGDSGGPLICNG------QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 73.3 bits (181), Expect = 7e-18
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
            K S  GDSGGPLV            G+VSYG    G+  P   T++++++ WI
Sbjct: 175 KKTSFKGDSGGPLVCNK------VAQGIVSYGRN-NGM-PPRACTKVSSFVHWI 220

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 75.1 bits (184), Expect = 8e-18
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG---------IGSPGIYTRITAY 70
             ++C GDSGGPL+           +G++S+G  + C            +   +  +   
Sbjct: 666 DPNTCRGDSGGPLIVHKRSR--FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 723

Query: 71  LPWIIARMAYEV 82
           LPW+  ++  E 
Sbjct: 724 LPWLKEKLQDED 735

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 73.0 bits (180), Expect = 1e-17
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+            G+ S+G   C     P  YT++  +L WI   +A
Sbjct: 176 GKDTCKGDSGGPLICNG------QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA 229

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 73.0 bits (180), Expect = 1e-17
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRIT-AYLPWIIARM 78
            KDSC GD+GGPL+ K           +VS G   CG+   PGIYT +T  Y  WI + +
Sbjct: 182 QKDSCKGDAGGPLICKG------VFHAIVSGGHE-CGVATKPGIYTLLTKKYQTWIKSNL 234

Query: 79  A 79
            
Sbjct: 235 V 235

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 72.5 bits (179), Expect = 1e-17
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
            + +  GDSGGPL+            G+VSYG P      P I+TR++ Y+PWI
Sbjct: 174 LRAAFMGDSGGPLLCAG------VAHGIVSYGHP-DAK-PPAIFTRVSTYVPWI 219

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 72.5 bits (179), Expect = 1e-17
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 10/55 (18%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
            K+S +GDSGGPLV            G+VSYG      G+ P +YTRI+++L WI
Sbjct: 174 RKNSFSGDSGGPLVCNG------VAQGIVSYG---RNDGTTPDVYTRISSFLSWI 219

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score = 71.0 bits (175), Expect = 1e-17
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGPL+            G+ S+G   CG    P IYT++  YL WI   + 
Sbjct: 96  GKDTCMGDSGGPLICNG------MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 8/60 (13%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G   C   G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNG------ELQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLTSTMA 220

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 8/60 (13%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G+  C     PG+YT++  Y+ WI   +A
Sbjct: 169 GKDSCQGDSGGPVVCSG------KLQGIVSWGSG-CAQKNKPGVYTKVCNYVSWIKQTIA 221

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 72.6 bits (179), Expect = 1e-17
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRIT-AYLPWI 74
           G+DSCNGDSG PL+ +          G+ S+G    CG    PG+Y  ++  +L WI
Sbjct: 176 GRDSCNGDSGSPLLCEG------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score = 72.2 bits (178), Expect = 2e-17
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
           GKDSC GDSGGP+V  +N      LIG VS+G   C      G+Y  + A   +I
Sbjct: 172 GKDSCQGDSGGPIVDSSN-----TLIGAVSWGN-GCARPNYSGVYASVGALRSFI 220

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 72.2 bits (178), Expect = 2e-17
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA 79
            K +  GDSGGPL+            G+VSYG         P ++TRI+ Y PWI   + 
Sbjct: 174 TKSAFKGDSGGPLLCAG------VAQGIVSYG---RSDAKPPAVFTRISHYRPWINQILQ 224

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 72.2 bits (178), Expect = 2e-17
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 78
               CNGDSGGPL  + N +  +Y+ G+ S+ +   C     P ++TR++AY+ W+   M
Sbjct: 179 ANSGCNGDSGGPLNCQVNGS--YYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 71.8 bits (177), Expect = 2e-17
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 10/55 (18%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI 74
              S   DSGGPLV K          G+VSYG      GS P ++TR+ +++ WI
Sbjct: 176 KGASFEEDSGGPLVCKR------AAAGIVSYG---QTDGSAPQVFTRVLSFVSWI 221

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 71.8 bits (177), Expect = 3e-17
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G   C     PG+YT++  Y+ WI   +A
Sbjct: 173 GKDSCQGDSGGPVVCNG------QLQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTIA 225

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 71.9 bits (176), Expect = 9e-17
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 19/76 (25%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-----------------PGI 63
            +  C G+SGG +  +       + +GLVS+G     +GS                    
Sbjct: 428 DESPCKGESGGAVFLERRFR--FFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDF 485

Query: 64  YTRITAYLPWIIARMA 79
           +  +    PW+   + 
Sbjct: 486 HINLFRMQPWLRQHLG 501

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 67.8 bits (165), Expect = 3e-15
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G DSC GDSGGPLV    D     L G+ S+G   C     PG+Y R++ ++ WI   M 
Sbjct: 733 GTDSCQGDSGGPLVCFEKDKY--ILQGVTSWGL-GCARPNKPGVYVRVSRFVTWIEGVMR 789

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITA-YLPWI 74
           D+ +G+SG  ++      +   ++G+ + G      G+     + TA ++ +I
Sbjct: 165 DTFSGNSGSAML-----DQNQQIVGVHNAGYSN---GTINGGPKATAAFVEFI 209

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca} Length = 186

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 24  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
           +  GDSGGP +  +         G+ S GT +C  G    +  I   L
Sbjct: 135 AEGGDSGGPWLTGS------QAQGVTSGGTGDCRSGGITFFQPINPLL 176

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A Length = 181

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 24  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
           +  GDSGG L   +        +GL S G+  C  G    Y  +T  L
Sbjct: 132 AQPGDSGGSLFAGS------TALGLTSGGSGNCRTGGTTFYQPVTEAL 173

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ... Length = 185

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 27  GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
           GDSGGPL            IGL S G+  C  G    +  +T  L
Sbjct: 139 GDSGGPLYSGT------RAIGLTSGGSGNCSSGGTTFFQPVTEAL 177

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis} Length = 189

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 24  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
           +  GDSGG L+  N         G+ S G+  C  G    +  +   L
Sbjct: 132 AEPGDSGGSLLAGN------QAQGVTSGGSGNCRTGGTTFFQPVNPIL 173

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1 Length = 187

 Score = 35.2 bits (81), Expect = 7e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)

Query: 27  GDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
           GDSGG     +        +G+ S  +   G     I+  +T  L
Sbjct: 141 GDSGGAHFAGS------VALGIHSGSSGCSGTAGSAIHQPVTEAL 179

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba} Length = 188

 Score = 34.9 bits (80), Expect = 9e-04
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 24  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
           +  GDSGG  +            G+ S G+  C  G    Y  +   L
Sbjct: 138 AEPGDSGGSFISGT------QAQGVTSGGSGNCRTGGTTFYQEVNPML 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.93
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	99.92
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	99.91
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	99.91
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	99.9
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	99.9
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	99.9
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	99.9
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	99.9
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	99.9
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	99.9
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	99.9
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	99.89
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	99.89
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	99.89
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	99.89
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	99.89
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	99.89
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	99.89
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	99.89
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.88
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	99.88
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	99.88
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	99.88
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	99.88
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	99.88
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	99.88
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	99.88
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	99.88
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	99.88
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	99.88
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	99.88
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	99.87
1aut_C	250	Activated protein C; serine proteinase, plasma cal	99.87
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	99.87
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	99.87
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	99.87
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	99.87
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	99.87
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	99.87
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	99.87
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	99.87
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	99.87
1elv_A	333	Complement C1S component; trypsin-like serin prote	99.87
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	99.86
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	99.86
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	99.86
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	99.86
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	99.86
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	99.86
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	99.86
1md8_A	329	C1R complement serine protease; innate immunity, a	99.86
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	99.86
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	99.86
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	99.86
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	99.86
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	99.86
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	99.85
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	99.85
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	99.85
1gpz_A	399	Complement C1R component; hydrolase, activation, i	99.85
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	99.85
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	99.85
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	99.85
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	99.85
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	99.85
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	99.85
2aiq_A	231	Protein C activator; snake venom serine proteinase	99.84
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	99.84
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	99.84
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	99.84
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	99.84
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	99.84
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	99.84
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	99.84
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	99.83
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	99.83
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.83
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	99.83
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	99.83
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	99.83
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.82
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	99.82
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	99.82
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.82
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	99.81
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	99.81
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	99.8
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.8
1a7s_A	225	Heparin binding protein; serine protease homolog,	99.8
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	99.79
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	99.79
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	99.76
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.76
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.6
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.48
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.44
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.24
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.17
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.14
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.09
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.08
1hpg_A	187	Glutamic acid specific protease; serine protease,	98.65
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	98.65
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	98.61
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	98.4
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.34
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	98.2
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	97.97
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.88
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	97.67
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	97.5
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	97.36
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	97.3
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.2
3k6y_A	237	Serine protease, possible membrane-associated seri	97.08
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.0
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	96.99
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	96.69
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	96.62
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	96.19
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	96.18
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	95.88
3syj_A	1011	Adhesion and penetration protein autotransporter;	95.4
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	94.41
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	94.4
3h09_A	989	IGA1 protease, immunoglobulin A1 protease; serine	94.25
3sze_A	968	Serine protease ESPP; parallel beta-helix, hydrola	93.47
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	93.02
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	90.05
2w5e_A	163	Putative serine protease; coiled coil, transmembra	86.98
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	85.86
2hrv_A	142	2A cysteine proteinase; hydrolase (cysteine protei	82.96

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.93  E-value=1.8e-26  Score=128.78  Aligned_cols=69  Identities=38%  Similarity=0.705  Sum_probs=60.8

Q ss_pred             cCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .++++||| +..+.++|+|||||||++.. +++| +|+||+||+.. |.... |+|||||++|++||+++++.+
T Consensus        27 ~i~~~~iCa~~~~~~~C~GDSGGPL~~~~-~~~~-~l~GIvS~g~~-c~~~~~p~vyt~V~~y~~WI~~~~~~n   97 (97)
T 1yph_E           27 KIKDAMICAGASGVSSCMGDSGGPLVCKK-NGAW-TLVGIVSWGSS-TCSTSTPGVYARVTALVNWVQQTLAAN   97 (97)
T ss_dssp             GCCTTEEEEECSSCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECCT-TCCTTSEEEEEEHHHHHHHHHHHHHHC
T ss_pred             CCCCceEeecCCCCCCCcCCCCCcEEEEe-CCeE-EEEEEEEeCCC-CCCCCCCeEEEEHHHhHHHHHHHHccC
Confidence            57899999 76677999999999999987 5788 99999999987 76555 999999999999999998754

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=99.92  E-value=7.2e-25  Score=144.84  Aligned_cols=72  Identities=28%  Similarity=0.565  Sum_probs=63.2

Q ss_pred             CCcCCCCeee-c--CCCCCCCcCCCCceeEEEeC-CCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086          8 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNN-DTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         8 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~-~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ...++++||| +  ..++++|+|||||||++... +++| +|+||+|||.. |....|+|||||++|++||+++|++|
T Consensus       272 ~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~-~lvGIvS~G~~-C~~~~pgVYTrVs~y~~WI~~~i~~N  347 (347)
T 4f4o_C          272 QPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTW-YAAGILSFDKS-CRTAEYGVYVRVTSILDWIQTTIADN  347 (347)
T ss_dssp             CCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEE-EEEEEEEECCC-TTTSSCEEEEEHHHHHHHHHHHHTC-
T ss_pred             cccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEE-EEEEEEEeCCC-CCCCCCeEEEEHHHHHHHHHHHHHcC
Confidence            4458899999 6  66889999999999999764 5777 99999999988 98766999999999999999999875

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=137.69  Aligned_cols=78  Identities=41%  Similarity=0.711  Sum_probs=65.9

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++.+.....+.+.++| +  ....++|+|||||||++.. +++| +|+||+|||.. |.... |+|||||++|++||++
T Consensus       190 C~~~~~~~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~-~~~~-~lvGIvS~G~~-C~~~~~P~vyt~V~~y~~WI~~  266 (276)
T 2vnt_A          190 CQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGRM-TLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRS  266 (276)
T ss_dssp             HTSTTTTGGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHH
T ss_pred             hhhhhccCcccCccceeeccCCCCCCCCCCCCCCeEEEee-CCeE-EEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHH
Confidence            55555555567778888 4  6678999999999999987 4788 99999999998 98776 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +|+++
T Consensus       267 ~~~~~  271 (276)
T 2vnt_A          267 HTKEE  271 (276)
T ss_dssp             HHSCC
T ss_pred             Hhhhh
Confidence            99764

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=99.91  E-value=1.8e-24  Score=136.15  Aligned_cols=79  Identities=29%  Similarity=0.504  Sum_probs=66.5

Q ss_pred             CCCCCCCCCcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecC--CCCCCCC-CcEEEEcCCcHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT--PECGIGS-PGIYTRITAYLPWII   75 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~--~~c~~~~-p~vyt~v~~~~~WI~   75 (82)
                      |++...+...+++.||| + ....+.|+|||||||++...+++| +|+||+|||.  . |.... |+|||||++|++||+
T Consensus       158 C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~~~g~~-~l~Gi~S~g~~~~-C~~~~~p~vyt~V~~~~~WI~  235 (241)
T 1bru_P          158 CSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQW-QVHGIVSFGSSLG-CNYYHKPSVFTRVSNYIDWIN  235 (241)
T ss_dssp             HTSTTTTGGGCCTTEEEECCSSSSBCCTTCTTCEEEEECTTSCE-EEEEEEEECBTTB-SSCTTCCEEEEEGGGSHHHHH
T ss_pred             hCcccccCCcCCCceEeecCCCCCccCCCCCCCcEEEECCCCCE-EEEEEEEEcCCCC-CCCCCCCcEEEEHHHhHHHHH
Confidence            44443344568899999 6 667899999999999998756888 9999999997  5 98755 999999999999999


Q ss_pred             HHhhcc
Q psy17086         76 ARMAYE   81 (82)
Q Consensus        76 ~~~~~~   81 (82)
                      +++++|
T Consensus       236 ~~i~~n  241 (241)
T 1bru_P          236 SVIANN  241 (241)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999764

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=99.90  E-value=4.7e-24  Score=137.66  Aligned_cols=78  Identities=31%  Similarity=0.616  Sum_probs=65.5

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeC-CCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNN-DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWII   75 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~-~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~   75 (82)
                      |++...+...+++.||| +  .++.+.|+|||||||++... +++| +|+||+|||.. |.... |+|||||++|++||+
T Consensus       168 C~~~~~~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~-~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~  245 (290)
T 1fiw_A          168 CNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSY-VVVGITSWGVG-CARAKRPGVYTSTWSYLNWIA  245 (290)
T ss_dssp             HTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCE-EEEEEEEECSS-SSBTTBCEEEEESGGGHHHHH
T ss_pred             hccccccCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCE-EEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHH
Confidence            55444345568999999 6  45679999999999999864 5788 99999999987 98766 999999999999999


Q ss_pred             HHhhc
Q psy17086         76 ARMAY   80 (82)
Q Consensus        76 ~~~~~   80 (82)
                      ++++.
T Consensus       246 ~~~~~  250 (290)
T 1fiw_A          246 SKIGS  250 (290)
T ss_dssp             HHHCH
T ss_pred             HHhCc
Confidence            99864

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=99.90  E-value=6.1e-24  Score=132.83  Aligned_cols=77  Identities=36%  Similarity=0.652  Sum_probs=65.3

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++...+...+++.||| +  ....+.|+|||||||++...+++| +|+||+|||.. |.... |++||||+.|++||++
T Consensus       151 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~  228 (232)
T 2oq5_A          151 CNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIW-YLAGIVSWGDE-CAKPNKPGVYTRVTALRDWITS  228 (232)
T ss_dssp             HTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCE-EEEEEEEECSS-SSBTTBCEEEEETGGGHHHHHH
T ss_pred             cCCccccCCccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCE-EEEEEEEeCCC-CCCCCCCeEEEEhHHhHHHHHH
Confidence            55544445568899999 6  445799999999999998766888 99999999987 98766 9999999999999999


Q ss_pred             Hhh
Q psy17086         77 RMA   79 (82)
Q Consensus        77 ~~~   79 (82)
                      +++
T Consensus       229 ~~~  231 (232)
T 2oq5_A          229 KTG  231 (232)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            874

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=99.90  E-value=5.3e-24  Score=134.37  Aligned_cols=78  Identities=33%  Similarity=0.618  Sum_probs=65.4

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++.......+++.||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||++
T Consensus       166 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~  242 (247)
T 1ddj_A          166 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFE-KDKY-ILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEG  242 (247)
T ss_dssp             HTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEC-SSSE-EEEEEECGGGC-CBBTTBCEEEEEGGGSHHHHHH
T ss_pred             hcchhccCCCCcCCeEeecCCCCCCccccCcCcCcEEEEE-CCcE-EEEEEEEECCC-CCCCCCCEEEEEhHHhHHHHHH
Confidence            44433334568899999 6  4578999999999999986 4678 99999999987 98766 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +|+++
T Consensus       243 ~~~~n  247 (247)
T 1ddj_A          243 VMRNN  247 (247)
T ss_dssp             HHHTC
T ss_pred             HhhcC
Confidence            99764

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=99.90  E-value=4.6e-24  Score=136.43  Aligned_cols=69  Identities=41%  Similarity=0.824  Sum_probs=61.0

Q ss_pred             CcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          9 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         9 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..++++||| + ..+.++|+|||||||++...+++| +|+||+|||.. |.... |+|||||+.|++||+++++
T Consensus       206 ~~~~~~~~Ca~~~~~~~~C~GDSGGPL~~~~~~~~~-~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          206 VRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQF-FLEGLVSFGAT-CGTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             CCCCTTEEEECCTTCTTCCCCCTTCEEEEEEGGGEE-EEEEEEEECCB-CSTTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             ccCCCceEeeecCCCCeeCCCccCcceEEEcCCCcE-EEEEEEEECCC-CCCCCCCcEEeEHHHHHHHHHHhhC
Confidence            358899999 6 557899999999999998555777 99999999987 98876 9999999999999999875

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=99.90  E-value=8.3e-24  Score=132.64  Aligned_cols=77  Identities=40%  Similarity=0.704  Sum_probs=65.7

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++...+...++++||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||++
T Consensus       167 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-~~~~-~l~Gi~S~g~~-c~~~~~p~vyt~V~~~~~WI~~  243 (247)
T 3mhw_U          167 CQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGRM-TLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRS  243 (247)
T ss_dssp             HTSTTTTGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSBTTBCEEEEEGGGCHHHHHH
T ss_pred             hcCccccCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEE-CCCE-EEEEEEEECCC-CCCCCCCeEEEEHHHHHHHHHH
Confidence            55555555678999999 6  4478999999999999987 4788 99999999987 98766 9999999999999999


Q ss_pred             Hhhc
Q psy17086         77 RMAY   80 (82)
Q Consensus        77 ~~~~   80 (82)
                      ++++
T Consensus       244 ~~~e  247 (247)
T 3mhw_U          244 HTKE  247 (247)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            9864

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=99.90  E-value=1.2e-23  Score=132.01  Aligned_cols=79  Identities=30%  Similarity=0.489  Sum_probs=65.5

Q ss_pred             CCCCCCCCCcCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecC--CCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT--PECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~--~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++...+...+++.||| +..+.+.|+|||||||++...+++| +|+||+||+.  . |.... |+|||||+.|++||++
T Consensus       158 C~~~~~~~~~~~~~~~Ca~~~~~~~C~GDsGgPL~~~~~~~~~-~l~Gi~S~g~~~~-C~~~~~p~vyt~V~~~~~WI~~  235 (240)
T 1fon_A          158 CSQWDWWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGSW-QVHGVTSFVSAFG-CNTIKKPTVFTRVSAFIDWIDE  235 (240)
T ss_dssp             HTSTTTTGGGCCTTEEEECCSSSCSTTSCTTCEEEEECSSSCE-EEEEEEEECCTTC-SSBTTBCEEEEEGGGSHHHHHH
T ss_pred             hccceecCCccccceEeecCCCCcccCCCCCCeEEeEcCCCCE-EEEEEEEEcCCCC-CCCCCCCcEEEEhHHHHHHHHH
Confidence            44443344568899999 7444899999999999998756888 9999999986  5 98755 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +++++
T Consensus       236 ~~~~~  240 (240)
T 1fon_A          236 TIASN  240 (240)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            99764

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=99.90  E-value=9.6e-24  Score=132.59  Aligned_cols=79  Identities=25%  Similarity=0.476  Sum_probs=65.1

Q ss_pred             CCCCCCCCCcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC-CCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~-~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++...+...+++.||| + ....+.|+|||||||++.. +++| +|+||+||+.. .|.... |+|||||+.|++||++
T Consensus       158 C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~-~g~~-~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~  235 (240)
T 1gvk_B          158 CSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLV-NGQY-AVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINN  235 (240)
T ss_dssp             HTSTTTTGGGCCTTEEEECCSSSCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHH
T ss_pred             hccccccCccCCcceEeecCCCCCcccCCCCcCceEEEE-CCcE-EEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHH
Confidence            44443344468899999 6 6678999999999999986 4788 99999999952 398755 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +++++
T Consensus       236 ~i~~n  240 (240)
T 1gvk_B          236 VIASN  240 (240)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            99764

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=99.89  E-value=3.4e-23  Score=130.51  Aligned_cols=76  Identities=43%  Similarity=0.826  Sum_probs=63.4

Q ss_pred             CCCCCCCCCcCCCCeee-c-C-CC------CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCc
Q psy17086          1 MNQNHKGDISVTETKFL-V-F-PG------KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAY   70 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~-~-~~------~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~   70 (82)
                      |++.+.....++++||| + . .+      .+.|+|||||||++.. +++| +|+||+||+.. |.... |+|||||+.|
T Consensus       166 C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~-~~~~-~l~Gi~S~g~~-C~~~~~p~vyt~V~~y  242 (252)
T 1rtf_B          166 CTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLN-DGRM-TLVGIISWGLG-CGQKDVPGVYTKVTNY  242 (252)
T ss_dssp             SSTTTTTTCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSCTTCCEEEEEGGGG
T ss_pred             hhhhhccCCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEe-CCcE-EEEEEEEEcCC-CCCCCCCeEEEEHHHH
Confidence            55555445568999999 6 2 22      7899999999999986 4788 99999999987 98766 9999999999


Q ss_pred             HHHHHHHhh
Q psy17086         71 LPWIIARMA   79 (82)
Q Consensus        71 ~~WI~~~~~   79 (82)
                      ++||+++|+
T Consensus       243 ~~WI~~~~~  251 (252)
T 1rtf_B          243 LDWIRDNMR  251 (252)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999999886

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=99.89  E-value=3.3e-23  Score=130.94  Aligned_cols=77  Identities=34%  Similarity=0.575  Sum_probs=64.0

Q ss_pred             CCCCCCCCCcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC-CCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~-~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++.+.....+++.||| + .+..+.|+|||||||++.. +++| +|+||+|||.. .|.... |+|||||+.|++||++
T Consensus       170 C~~~~~~~~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~-~~~~-~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~  247 (251)
T 1pyt_D          170 CSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQA-DGQW-DVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQ  247 (251)
T ss_dssp             HTSTTTTTTTCCTTEEEECCSCSSCCCCSCTTCEEEEES-SSSE-EEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHH
T ss_pred             cchhhccCCCcCCCeEEecCCCCCccCCCCCCCceEEEE-CCCE-EEEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence            45544445568999999 6 6667999999999999986 4788 99999999962 398755 9999999999999999


Q ss_pred             Hhh
Q psy17086         77 RMA   79 (82)
Q Consensus        77 ~~~   79 (82)
                      +++
T Consensus       248 ~~~  250 (251)
T 1pyt_D          248 KLQ  250 (251)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            885

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=99.89  E-value=3.2e-23  Score=130.49  Aligned_cols=78  Identities=32%  Similarity=0.643  Sum_probs=64.3

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++...+...+++.||| +  ..+.+.|+|||||||++.. +++| +|+||+||+.. |.... |++||||+.|++||++
T Consensus       160 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~g~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~  236 (248)
T 2r0l_A          160 CSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVA-YLYGIISWGDG-CGRLHKPGVYTRVANYVDWIND  236 (248)
T ss_dssp             HTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECST-TTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hCCccccCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEE-CCcE-EEEEEEEeCCC-CCCCCCCcEEEEHHHHHHHHHH
Confidence            44443344568899999 6  4578999999999999987 4788 99999999987 98765 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +++.+
T Consensus       237 ~~~~~  241 (248)
T 2r0l_A          237 RIRPP  241 (248)
T ss_dssp             HHC--
T ss_pred             HhcCC
Confidence            98753

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=99.89  E-value=4e-23  Score=137.26  Aligned_cols=79  Identities=33%  Similarity=0.660  Sum_probs=65.8

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeC---CCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNN---DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPW   73 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~---~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~W   73 (82)
                      |++...+...++++||| +  ..+.++|+|||||||++...   .++| +|+||+|||.. |.... |+|||||+.|++|
T Consensus       277 C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~-~lvGIvS~G~~-C~~~~~p~vyt~V~~y~~W  354 (372)
T 1z8g_A          277 CNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRW-RLCGIVSWGTG-CALAQKPGVYTKVSDFREW  354 (372)
T ss_dssp             HTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEE-EEEEEEEEBSS-SSCTTCCEEEEEGGGGHHH
T ss_pred             hCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCE-EEEEEEEeCCC-CCCCCCCeEEEEHHHHHHH
Confidence            45443345578999999 6  45689999999999999864   3677 99999999997 98766 9999999999999


Q ss_pred             HHHHhhcc
Q psy17086         74 IIARMAYE   81 (82)
Q Consensus        74 I~~~~~~~   81 (82)
                      |+++++..
T Consensus       355 I~~~i~~~  362 (372)
T 1z8g_A          355 IFQAIKTH  362 (372)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhcc
Confidence            99998753

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=99.89  E-value=3.4e-23  Score=132.91  Aligned_cols=78  Identities=32%  Similarity=0.643  Sum_probs=64.4

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++...+...+++.||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||++
T Consensus       195 C~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~-~g~~-~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~~  271 (283)
T 1yc0_A          195 CSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEK-NGVA-YLYGIISWGDG-CGRLHKPGVYTRVANYVDWIND  271 (283)
T ss_dssp             HTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECST-TTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hcCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEE-CCcE-EEEEEEEECCC-CCCCCCCeEEEEhhhHHHHHHH
Confidence            44443344568899999 6  4468899999999999987 4788 99999999997 98765 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +++.+
T Consensus       272 ~i~~~  276 (283)
T 1yc0_A          272 RIRPP  276 (283)
T ss_dssp             HCC--
T ss_pred             HhcCC
Confidence            98753

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=99.89  E-value=4.1e-23  Score=132.91  Aligned_cols=70  Identities=36%  Similarity=0.673  Sum_probs=61.0

Q ss_pred             CcCCCCeee-c-C----CCCCCCcCCCCceeEEEeC-CCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V-F----PGKDSCNGDSGGPLVWKNN-DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~-~----~~~~~C~gdsGgPl~~~~~-~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++||| + .    .+.++|+|||||||++... +++| +|+||+|||.. |.... |+|||||++|++||+++++.
T Consensus       209 ~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~-~l~GIvS~g~~-C~~~~~p~vyt~V~~y~~WI~~~i~~  286 (289)
T 2bdy_A          209 IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRW-YQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVIDQ  286 (289)
T ss_dssp             SCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCE-EEEEEEEECSS-SSCTTCCEEEEETGGGHHHHHHHHHC
T ss_pred             CcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCE-EEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence            357899999 6 2    2678999999999999864 5788 99999999987 98766 99999999999999999875

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=99.89  E-value=5.2e-23  Score=129.12  Aligned_cols=70  Identities=39%  Similarity=0.634  Sum_probs=61.5

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEe-CCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~-~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++||| +  ..+.+.|+|||||||++.. .+++| +|+||+|||.. |.... |++||||++|++||+++++.
T Consensus       175 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~-~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~  249 (251)
T 3gov_B          175 KKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQW-YLVGTVSWGDD-CGKKDRYGVYSYIHHNKDWIQRVTGV  249 (251)
T ss_dssp             CCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCE-EEEEEEEECSS-SSCSSCCEEEEETTTTHHHHHHHHCC
T ss_pred             CCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcE-EEEEEEEECCC-CCCCCCCEEEEEHHHhHHHHHHHhcc
Confidence            468899999 6  4568999999999999985 45788 99999999987 98766 99999999999999999864

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=99.89  E-value=6.9e-23  Score=128.69  Aligned_cols=77  Identities=31%  Similarity=0.705  Sum_probs=61.5

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++.+.....+++.||| +  ..+.+.|+|||||||++.. +++| +|+||+||+.. |.... |++||||+.|++||++
T Consensus       148 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~-~l~Gi~S~g~~-C~~~~~p~vyt~V~~y~~WI~~  224 (240)
T 1si5_H          148 CSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQ-HKMR-MVLGVIVPGRG-CAIPNRPGIFVRVAYYAKWIHK  224 (240)
T ss_dssp             TCC-------CCTTEEEEECSSSCCBCCTTCTTCEEEEEC-SSSE-EEEEEECSCSC-SSCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhhhhcCCccCCCCEEeecCCCCCCEeccCCCCCcEEEEE-CCcE-EEEEEEEECCC-CCCCCCCcEEEEHHHHHHHHHH
Confidence            55544322337899999 6  3478999999999999987 4788 99999999987 98765 9999999999999999


Q ss_pred             Hhhc
Q psy17086         77 RMAY   80 (82)
Q Consensus        77 ~~~~   80 (82)
                      +++.
T Consensus       225 ~i~~  228 (240)
T 1si5_H          225 IILT  228 (240)
T ss_dssp             HHSS
T ss_pred             HHhc
Confidence            9865

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.88  E-value=5.5e-23  Score=122.16  Aligned_cols=66  Identities=44%  Similarity=0.823  Sum_probs=57.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeec-CCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g-~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..++++||| +  ..+.+.|+|||||||++..      +|+||+||| .. |.... |+|||||++|++||+++++++
T Consensus        81 ~~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~g------~l~Gi~S~g~~~-C~~~~~p~vyt~V~~y~~WI~~~~~~~  151 (152)
T 2pka_B           81 DKVTESMLCAGYLPGGKDTCMGDSGGPLICNG------MWQGITSWGHTP-CGSANKPSIYTKLIFYLDWIDDTITEN  151 (152)
T ss_dssp             SBCCTTEEEEECTTSSCBCCTTCTTCEEEETT------EEEEEECCCCSS-TTCTTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             CCCCCCEEeeccCCCCCcccCCccccceEECC------EEEEEEecCCCC-CCCCCCCeEEEEHHHHHHHHHHHhccC
Confidence            457899999 6  4578999999999999963      799999999 56 98765 999999999999999998764

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=99.88  E-value=7.7e-23  Score=128.68  Aligned_cols=69  Identities=41%  Similarity=0.719  Sum_probs=61.3

Q ss_pred             cCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+++.||| +..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||+++++++
T Consensus       174 ~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~-~g~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~~  244 (245)
T 2f9n_A          174 IIRDDMLCAGNSQRDSCQGDSGGPLVCKV-NGTW-LQAGVVSWGEG-CAQPNRPGIYTRVTYYLDWIHHYVPKK  244 (245)
T ss_dssp             CSCTTEEEECCSSSBCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHSCC-
T ss_pred             ccccccEeecCCCCCcCCCCCCCceEEEE-CCEE-EEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHHHhhcC
Confidence            47899999 77778999999999999987 4788 99999999987 98766 999999999999999998753

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=99.88  E-value=2.6e-23  Score=130.13  Aligned_cols=70  Identities=34%  Similarity=0.670  Sum_probs=61.1

Q ss_pred             cCCCCeee-c-C-CC--CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V-F-PG--KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~-~-~~--~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+++.||| + . +.  .+.|+|||||||++...+++| +|+||+|||.. |....|+|||||+.|++||++++++|
T Consensus       164 ~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~-~l~Gi~S~g~~-C~~~~p~vyt~v~~~~~WI~~~i~~n  238 (238)
T 1ym0_A          164 TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIF-SLVGIVSWGIG-CASGYPGVYSRVGFHAGWITDTITNN  238 (238)
T ss_dssp             CCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCE-EEEEEEEECSS-SSSSSCEEEEEHHHHHHHHHHHHHCC
T ss_pred             ccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCE-EEEEEEeECCC-CCCCCCcEEEEHHHhHHHHHHHhcCC
Confidence            57899999 6 3 33  789999999999998766888 99999999987 98434999999999999999999875

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=99.88  E-value=6e-23  Score=128.84  Aligned_cols=68  Identities=37%  Similarity=0.765  Sum_probs=60.2

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .+++.||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       166 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~  237 (238)
T 3bg8_A          166 KITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVW-HLVGITSWGEG-CAQRERPGVYTNVVEYVDWILEKTQA  237 (238)
T ss_dssp             CCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             CCCCCeEeecCCCCCCCcCCCCCCcceEEEE-CCeE-EEEEEEEECCC-CCCCCCCcEEEeHHHHHHHHHHHHhc
Confidence            47899999 6  4578999999999999987 4788 99999999987 98766 99999999999999999864

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=99.88  E-value=1.4e-22  Score=126.76  Aligned_cols=69  Identities=38%  Similarity=0.703  Sum_probs=61.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..+++.||| +  ..+.+.|+|||||||++...+++| +|+||+|||.. |.... |++||||+.|++||+++++
T Consensus       168 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~-~l~Gi~S~g~~-c~~~~~p~vyt~v~~y~~WI~~~~~  240 (241)
T 3ncl_A          168 QQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI-FQAGVVSWGDG-CAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             TTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCE-EEEEEEEECSS-SSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             cCCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcE-EEEEEEEECCC-CCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            457899999 6  567899999999999988777888 99999999987 88766 9999999999999999874

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=99.88  E-value=2.8e-23  Score=129.05  Aligned_cols=70  Identities=30%  Similarity=0.552  Sum_probs=61.6

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..+++.||| +  ..+.+.|+|||||||++...+++| +|+||+||+.. |.... |++||||+.|++||+++++.
T Consensus       150 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~-~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (224)
T 3beu_A          150 ILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEW-VQVGIVSWGEG-CARKGKYGVYTEVSTFASAIASAART  223 (224)
T ss_dssp             CCCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSCE-EEEEEEEEESS-SSCTTCCEEEEEHHHHHHHHHHHHTT
T ss_pred             ccCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCCE-EEEEEeccCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            347889999 6  456899999999999998766888 99999999987 98765 99999999999999999864

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=99.88  E-value=1.6e-22  Score=126.67  Aligned_cols=76  Identities=29%  Similarity=0.546  Sum_probs=61.9

Q ss_pred             CCCCCCCCCcCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecC-CCCCCCC-CcEEEEcCCcHHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGS-PGIYTRITAYLPWIIAR   77 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~-~~c~~~~-p~vyt~v~~~~~WI~~~   77 (82)
                      |++...+...+++.||| +..+.+.|+|||||||++.. +++| +|+||+||+. ..|.... |+|||||+.|++||+++
T Consensus       158 C~~~~~~~~~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~-~g~~-~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~  235 (236)
T 1elt_A          158 CSSSGWWGSTVKTTMVCAGGGANSGCNGDSGGPLNCQV-NGSY-YVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGI  235 (236)
T ss_dssp             HTSTTTTGGGSCTTEEEECCSSCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred             hccccccCCcCCcceEEecCCCCccCCCCCCCeeEEEE-CCEE-EEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHhh
Confidence            44443344468899999 74458899999999999987 5788 9999999985 2398755 99999999999999987


Q ss_pred             h
Q psy17086         78 M   78 (82)
Q Consensus        78 ~   78 (82)
                      |
T Consensus       236 i  236 (236)
T 1elt_A          236 M  236 (236)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=99.88  E-value=6e-23  Score=128.67  Aligned_cols=70  Identities=26%  Similarity=0.525  Sum_probs=59.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++.. +++| +|+||+||+.. |.... |+|||||+.|++||+++++..
T Consensus       155 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~-~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  228 (234)
T 2asu_B          155 GRVRESEMCTEGLLAPVGACEGDYGGPLACFT-HNSW-VLEGIIIPNRV-CARSRWPAVFTRVSVFVDWIHKVMRLG  228 (234)
T ss_dssp             TCCCTTEEEECCCSSCCBCCTTCTTCEEEEEE-TTEE-EEEEEECCCSS-SSCTTCCEEEEEGGGSHHHHHHHC---
T ss_pred             CccCcceEeecCCCCCCeeccCCCCCceEEEE-CCeE-EEEEEEEcCCC-CCCCCCCeEEEEHHHHHHHHHHHhhcc
Confidence            457899999 6  4478999999999999987 4777 99999999987 98766 999999999999999998753

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=99.88  E-value=1.3e-22  Score=127.96  Aligned_cols=69  Identities=38%  Similarity=0.705  Sum_probs=61.6

Q ss_pred             cCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+++.||| +..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||+++++.+
T Consensus       175 ~~~~~~~Ca~~~~~~~C~GDSGgPL~~~~-~~~~-~l~GI~S~g~~-c~~~~~p~vyt~V~~~~~WI~~~~~~n  245 (245)
T 1t8o_A          175 KIKDAMICAGASGVSSCMGDSGGPLVCKK-NGAW-TLVGIVSWGSS-TCSTSTPGVYARVTALVNWVQQTLAAN  245 (245)
T ss_dssp             GCCTTEEEEECSSCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECCT-TCCTTSEEEEEEGGGTHHHHHHHHHTC
T ss_pred             cCCCceEEccCCCCccCcccCcCCEEEEE-CCEE-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHccC
Confidence            57899999 87778999999999999987 5788 99999999987 87655 999999999999999999764

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=99.88  E-value=1.7e-22  Score=126.85  Aligned_cols=69  Identities=38%  Similarity=0.794  Sum_probs=60.8

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+++.||| +  ..+.+.|+|||||||++.. +++| +|+||+||+.. |.... |++||||+.|++||+++++..
T Consensus       166 ~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~-~l~GI~S~g~~-c~~~~~p~vyt~V~~~~~WI~~~~~~~  238 (241)
T 2any_A          166 KITQRMVCAGYKEGGKDACKGDSGGPLVCKH-NGMW-RLVGITSWGEG-CARREQPGVYTKVAEYMDWILEKTQSS  238 (241)
T ss_dssp             CSCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHSCC
T ss_pred             CCCcCcEeecCCCCCCccCCCCCCCcEEEEE-CCEE-EEEEEEEecCC-CCCCCCCeEEEEHHHhHHHHHHHhhcc
Confidence            47899999 6  4578999999999999987 4788 99999999987 98766 999999999999999998753

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=99.88  E-value=1.1e-22  Score=127.23  Aligned_cols=69  Identities=36%  Similarity=0.793  Sum_probs=60.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       162 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (235)
T 2wph_S          162 FTITNNMFCAGFHEGGRDSCQGDSGGPHVTEV-EGTS-FLTGIISWGEE-CAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             SCCCTTEEEESCTTCSCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             CCCCCCEEEeCCCCCCCccCCCCCCCceEEeE-CCeE-EEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            357899999 6  4578999999999999976 4777 99999999987 98766 99999999999999999865

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=99.88  E-value=6.6e-23  Score=127.98  Aligned_cols=68  Identities=37%  Similarity=0.805  Sum_probs=60.0

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..++++||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |++||||+.|++||+++++
T Consensus       164 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~-~l~Gi~S~g~~-c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          164 YNITENMICAGYEEGGIDSCQGDSGGPLMCQE-NNRW-FLAGVTSFGYE-CALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ccCCCCeEeecCCCCCCccCCCCCCCeEEEEE-CCcE-EEEEEEEEcCC-CCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            357899999 6  5677999999999999987 4788 99999999987 98766 9999999999999998874

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=99.87  E-value=2.1e-22  Score=126.85  Aligned_cols=71  Identities=35%  Similarity=0.662  Sum_probs=61.1

Q ss_pred             CCcCCCCeee-c-C----CCCCCCcCCCCceeEEEeC-CCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          8 DISVTETKFL-V-F----PGKDSCNGDSGGPLVWKNN-DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         8 ~~~i~~~~~C-~-~----~~~~~C~gdsGgPl~~~~~-~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ...++++||| + .    ...+.|+|||||||++... +++| +|+||+|||.. |.... |++||||+.|++||+++|+
T Consensus       178 ~~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~i~  255 (259)
T 3rm2_H          178 RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRW-YQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID  255 (259)
T ss_dssp             SSCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCE-EEEEEEEECSS-SSCTTCCEEEEETGGGHHHHHHHHH
T ss_pred             cccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCE-EEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHHHH
Confidence            3457899999 6 2    2358999999999999874 5788 99999999987 98766 9999999999999999987


Q ss_pred             c
Q psy17086         80 Y   80 (82)
Q Consensus        80 ~   80 (82)
                      +
T Consensus       256 ~  256 (259)
T 3rm2_H          256 Q  256 (259)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=99.87  E-value=3.5e-22  Score=126.17  Aligned_cols=70  Identities=37%  Similarity=0.708  Sum_probs=60.1

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..++++||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||+++++..
T Consensus       168 ~~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~-~g~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~~  241 (250)
T 1aut_C          168 NMVSENMLCAGILGDRQDACEGDSGGPMVASF-HGTW-FLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWIHGHIRDK  241 (250)
T ss_dssp             SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEECSS-SSCTTCCEEEECGGGTHHHHHHHHC--
T ss_pred             cCCCCCEEEeCCCCCCCCCCCCCCchheEEEE-CCeE-EEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHhhcc
Confidence            357899999 6  4568999999999999976 4778 99999999987 98766 999999999999999998753

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=99.87  E-value=1.5e-22  Score=127.94  Aligned_cols=70  Identities=40%  Similarity=0.683  Sum_probs=61.2

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ....+.|+|||||||++.. +++| +|+||+|||.. |.... |++||||+.|++||+++++.+
T Consensus       169 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-~g~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  242 (254)
T 2bz6_H          169 PNITEYMFCAGYSDGSKDSCKGDSGGPHATHY-RGTW-YLTGIVSWGQG-CATVGHFGVYTRVSQYIEWLQKLMRSE  242 (254)
T ss_dssp             CCCCTTEEEESCSSSSCBCCGGGTTCEEEEEE-TTEE-EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHTSC
T ss_pred             CccCCCEEeecCCCCCCccccccCCCceEEeE-CCEE-EEEEEEEECCC-CCCCCCCeEEEEHHHHHHHHHHHHhcc
Confidence            357899999 6  4467899999999999986 4788 99999999987 98765 999999999999999998754

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=99.87  E-value=4.9e-22  Score=124.11  Aligned_cols=70  Identities=41%  Similarity=0.765  Sum_probs=60.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEe-CCCceEEEEEEEeec-CCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~-~~~~~~~l~Gi~s~g-~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++||| +  ..+.+.|+|||||||++.. .+++| +|+||+||| .. |.... |++||||+.|++||++++++
T Consensus       166 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~-~l~Gi~S~g~~~-C~~~~~p~vyt~V~~y~~WI~~~i~~  241 (242)
T 3tvj_B          166 GSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERW-FVGGIVSWGSMN-CGEAGQYGVYTKVINYIPWIENIISD  241 (242)
T ss_dssp             TCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEE-EEEEEEEEEESS-TTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcE-EEEEEEEeCCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            358899999 6  5578999999999999976 35677 999999999 55 98766 99999999999999999864

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=99.87  E-value=8.8e-23  Score=128.00  Aligned_cols=67  Identities=39%  Similarity=0.724  Sum_probs=59.0

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      ..+++.||| +  ..+.+.|+|||||||++.. +++| +|+||+||+.. |.... |+|||||+.|++||++++
T Consensus       166 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~-~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          166 DEILDSMICAGVPEGGKDSCQGDSGGPLAASD-TGST-YLAGIVSWGYG-CARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             TTSCTTEEEECCTTCCCBCCTTCTTCEEEECT-TSSC-EEEEEEEEESS-SSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             CCcCCCeEEEecCCCCCCCCCCcCCCCeEEec-CCCE-EEEEEEEecCC-CCCCCCCcEEEEHHHhHHHHHHhc
Confidence            347899999 6  4578999999999999975 5788 99999999987 98766 999999999999999876

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=99.87  E-value=2.8e-22  Score=135.06  Aligned_cols=71  Identities=35%  Similarity=0.662  Sum_probs=61.5

Q ss_pred             CCcCCCCeee-c-C----CCCCCCcCCCCceeEEEeC-CCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          8 DISVTETKFL-V-F----PGKDSCNGDSGGPLVWKNN-DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         8 ~~~i~~~~~C-~-~----~~~~~C~gdsGgPl~~~~~-~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ...++++||| + .    ...++|+|||||||++... +++| +|+||+|||.. |.... |+|||||+.|++||+++|+
T Consensus       343 ~~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~-~l~GIvS~G~~-C~~~~~pgVyT~Vs~y~~WI~~~i~  420 (424)
T 3nxp_A          343 RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRW-YQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID  420 (424)
T ss_dssp             SSCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCE-EEEEEECCSSC-TTTCCSCEEEEECTTCHHHHHHHHH
T ss_pred             cCcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcE-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            3468999999 6 2    2458999999999999863 5788 99999999988 98876 9999999999999999987


Q ss_pred             c
Q psy17086         80 Y   80 (82)
Q Consensus        80 ~   80 (82)
                      .
T Consensus       421 ~  421 (424)
T 3nxp_A          421 Q  421 (424)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=99.87  E-value=2.7e-22  Score=133.90  Aligned_cols=69  Identities=42%  Similarity=0.797  Sum_probs=58.9

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEe-CCCceEEEEEEEeec-CCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~-~~~~~~~l~Gi~s~g-~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .++++||| +  .++.++|+|||||||++.. .+++| +|+||+||| .. |.... |+|||||+.|++||+++|++
T Consensus       328 ~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~-~l~GIvS~g~~~-C~~~~~p~vyt~V~~y~~WI~~~i~~  402 (403)
T 1zjk_A          328 SVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERW-FVGGIVSWGSMN-CGEAGQYGVYTKVINYIPWIENIISD  402 (403)
T ss_dssp             CSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEE-EEEEEEEEECSC-C--CCCCEEEEEGGGGHHHHHHHHTT
T ss_pred             cCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcE-EEEEEEEECCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            68999999 6  4478999999999999976 35777 999999999 56 98766 99999999999999999864

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=99.87  E-value=7.6e-22  Score=123.89  Aligned_cols=70  Identities=37%  Similarity=0.693  Sum_probs=60.0

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..++++||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |++||||+.|++||+++++..
T Consensus       162 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~-~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~~~~~  235 (241)
T 2jkh_A          162 FIITQNMFCAGYDTKQEDACQGDSGGPHVTRF-KDTY-FVTGIVSWGEG-CARKGKYGIYTKVTAFLKWIDRSMKTR  235 (241)
T ss_dssp             SCCCTTEEEESCSSSSCBCCTTTTTCEEEEEE-TTEE-EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHTC--
T ss_pred             CcCCCCeEEeeCCCCCCccCcCcCCCeeEEEE-CCEE-EEEEEEEECCC-CCCCCCceEEEEhHHHHHHHHHHhccc
Confidence            357899999 6  4568899999999999986 3777 99999999987 98766 999999999999999998753

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=99.87  E-value=7.9e-22  Score=123.65  Aligned_cols=69  Identities=33%  Similarity=0.633  Sum_probs=59.6

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEe-CCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~-~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .++++||| +  ..+.+.|+|||||||++.. .+++| +|+||+|||.. |.. .|++||||+.|++||+++++++
T Consensus       169 ~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~-~l~Gi~S~g~~-C~~-~~~vyt~V~~y~~WI~~~~~~~  241 (242)
T 2qy0_B          169 VFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRW-VATGIVSWGIG-CSR-GYGFYTKVLNYVDWIKKEMEEE  241 (242)
T ss_dssp             CCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCE-EEEEEEEECSS-SSS-SCEEEEEGGGGHHHHHHHTTC-
T ss_pred             cCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeE-EEEEEEEECCC-cCC-CCcEEEEHHHHHHHHHHHhhcc
Confidence            47899999 6  3578999999999999964 45777 99999999987 985 4999999999999999999764

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=99.87  E-value=8e-22  Score=124.52  Aligned_cols=69  Identities=41%  Similarity=0.753  Sum_probs=61.5

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++||| +  ..+.+.|+|||||||++.. +++| +|+||+|||.. |.... |++||||+.|++||++++++
T Consensus       171 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-~~~~-~lvGI~S~g~~-c~~~~~p~vyt~v~~~~~WI~~~i~~  243 (261)
T 3gyl_B          171 HFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV-EGLW-YLTGIVSWGDA-CGARNRPGVYTLASSYASWIQSKVTE  243 (261)
T ss_dssp             CCCCTTEEEESCSSSSCBCCTTTTTCEEEEEE-TTEE-EEEEEECCCCC-SSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ccccCCeEeeCCCCCCCccCCCCCCCeeEEEe-CCEE-EEEEEEecCCC-CCCCCCCCEEEEHHHhHHHHHHHHhh
Confidence            468899999 6  6678999999999999987 4788 99999999987 98766 99999999999999999864

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=99.87  E-value=4.2e-22  Score=125.37  Aligned_cols=76  Identities=26%  Similarity=0.458  Sum_probs=60.9

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++...+...+++.||| +  ..+.+.|+|||||||++..   .+ +|+||+||+...|.... |+|||||+.|++||++
T Consensus       151 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~---~~-~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~  226 (240)
T 2zgc_A          151 CNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLVCGK---GR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRK  226 (240)
T ss_dssp             HTSTTTTTTCCCTTEEEEECSSTTCBCCTTCTTCEEEETT---TT-EEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHH
T ss_pred             hCCccccCCCCCCceEeeccCCCCCccCCCCccCeeEECC---CC-EEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHH
Confidence            44432334568899999 6  3468899999999999954   36 99999999943398766 9999999999999999


Q ss_pred             Hhhc
Q psy17086         77 RMAY   80 (82)
Q Consensus        77 ~~~~   80 (82)
                      +++.
T Consensus       227 ~~~~  230 (240)
T 2zgc_A          227 VTGR  230 (240)
T ss_dssp             HHCC
T ss_pred             HHhh
Confidence            9865

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=99.87  E-value=3.4e-22  Score=130.83  Aligned_cols=68  Identities=40%  Similarity=0.762  Sum_probs=59.6

Q ss_pred             cCCCCeee-c-CCCCCCCcCCCCceeEEEeC-CC-ceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNN-DT-RKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~-~~-~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .++++||| + ..+.++|+|||||||++... ++ +| +|+||+|||.. |..  |+|||||+.|++||+++|+++
T Consensus       256 ~~~~~~~Cag~~~~~~~C~GDSGGPL~~~~~~~~~~~-~l~GIvS~g~~-C~~--~~vyt~V~~y~~WI~~~~~~~  327 (333)
T 1elv_A          256 VFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKF-YAAGLVSWGPQ-CGT--YGLYTRVKNYVDWIMKTMQEN  327 (333)
T ss_dssp             CCCTTEEEEECSTTCBCCTTCTTCEEEEECSSCTTCE-EEEEEEEECSS-TTS--EEEEEEGGGGHHHHHHHHHHT
T ss_pred             cCCCCeECccCCCCCCcCcCcCCCceEEEECCCCcEE-EEEEEEeeCCC-CCC--CcEEeEHHHHHHHHHHHHhcc
Confidence            58899999 6 55889999999999999864 34 77 99999999987 985  899999999999999998754

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=99.86  E-value=8.6e-22  Score=122.86  Aligned_cols=74  Identities=30%  Similarity=0.576  Sum_probs=62.1

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++.+. ...+++.||| +  ..+.+.|+|||||||++..      .|+||+||+...|.... |++||||+.|++||++
T Consensus       150 C~~~~~-~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~  222 (234)
T 3s9c_A          150 CEPLYP-WVPADSRTLCAGILKGGRDTCHGDSGGPLICNG------EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQS  222 (234)
T ss_dssp             TTTTCT-TSCTTSSEEEEECTTSSCBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhhccc-CCCCCcceEEeecCCCCCccCCCCCCCeEEEeC------CcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHH
Confidence            444432 2467899999 6  6688999999999999965      79999999975598766 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +++++
T Consensus       223 ~i~~~  227 (234)
T 3s9c_A          223 IIAGN  227 (234)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            99764

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=99.86  E-value=3.5e-22  Score=133.86  Aligned_cols=69  Identities=32%  Similarity=0.673  Sum_probs=60.5

Q ss_pred             cCCCCeee-c-CCCCCCCcCCCCceeEEEeC--CCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086         10 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNN--DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~--~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .+++.||| + ..+.++|+|||||||++...  +++| +|+||+|||.. |.... |+|||||++|++||+++++.
T Consensus       311 ~i~~~~iCAg~~~g~d~C~GDSGGPLv~~~~~~~~~~-~lvGIvS~G~~-C~~~~~PgVYT~V~~y~~WI~~~i~~  384 (394)
T 2b9l_A          311 VLDQTFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRY-MQMGIVAWGIG-CGDENVPGVYANVAHFRNWIDQEMQA  384 (394)
T ss_dssp             CCCTTEEEECCBSSCSCCSSCTTCEEEEEETTEEEEE-EEEEEESCTTC-CCBSSSCEEEEEGGGGHHHHHHHHHH
T ss_pred             ecCCCEEEeeCCCCCcCCCCCcchhhEEEEcCCCCeE-EEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHHHHh
Confidence            57899999 6 66789999999999999742  3577 99999999997 98766 99999999999999999875

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=99.86  E-value=7.4e-22  Score=123.30  Aligned_cols=67  Identities=34%  Similarity=0.657  Sum_probs=58.9

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      .|+||+|||...|.... |++||||++|++||+++++++
T Consensus       161 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  231 (238)
T 4e7n_A          161 LPATSRTLCAGILEGGKDTCKGDSGGPLICNG------QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGN  231 (238)
T ss_dssp             CCSCCSEEEEECTTCSCBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTTC
T ss_pred             CCCCCCeEEeCCCCCCCccCCCCCCcceEECC------EEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhcC
Confidence            457899999 6  6688999999999999865      79999999976588766 999999999999999999764

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=99.86  E-value=6.2e-22  Score=124.23  Aligned_cols=64  Identities=41%  Similarity=0.754  Sum_probs=57.1

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCC-cHHHHHHHhhc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITA-YLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~-~~~WI~~~~~~   80 (82)
                      .+++.||| +  ..+.+.|+|||||||++..      +|+||+|||.. |.... |+|||||+. |++||+++++.
T Consensus       168 ~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~~------~l~Gi~S~g~~-C~~~~~p~vyt~v~~~y~~WI~~~~~~  236 (240)
T 1mza_A          168 FITKDMVCAGDAKGQKDSCKGDAGGPLICKG------VFHAIVSGGHE-CGVATKPGIYTLLTKKYQTWIKSNLVP  236 (240)
T ss_dssp             CCCTTEEEEECTTSCCCCCTTCTTCEEEETT------EEEEEECSSCC-SSCTTCCEEEEECCHHHHHHHHHHTCC
T ss_pred             cCCCCeEeecCCCCCCccCCCCCCCeeEECC------EEEEEEEECCC-CCCCCCCcEEEeChHHHHHHHHHhccC
Confidence            68899999 6  4678999999999999953      89999999987 98766 999999999 99999999864

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=99.86  E-value=8.3e-22  Score=122.75  Aligned_cols=73  Identities=41%  Similarity=0.735  Sum_probs=61.0

Q ss_pred             CCCCCCCCCcCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086          1 MNQNHKGDISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      |++.+.....+++.||| +..+.+.|+|||||||++..      +|+||+||+...|.... |++||||+.|++||++++
T Consensus       154 C~~~~~~~~~~~~~~~Ca~~~~~~~C~GDsGgPL~~~~------~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i  227 (228)
T 2xw9_A          154 CNRRTHHDGAITERLMCAESNRRDSCKGDAGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL  227 (228)
T ss_dssp             HTSTTTTTTCCCTTEEEECCSSCBCCTTCTTCEEEETT------EEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHH
T ss_pred             hcCccccCCcccCCEEecCCCCCccCCCCCcccEEECC------EEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHh
Confidence            55544433568999999 77778999999999999953      89999999983398765 999999999999999987


Q ss_pred             h
Q psy17086         79 A   79 (82)
Q Consensus        79 ~   79 (82)
                      +
T Consensus       228 ~  228 (228)
T 2xw9_A          228 A  228 (228)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=99.86  E-value=5.7e-22  Score=124.07  Aligned_cols=67  Identities=36%  Similarity=0.663  Sum_probs=57.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |++||||+.|++||+++++++
T Consensus       164 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  234 (235)
T 1ton_A          164 DNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG------VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKEN  234 (235)
T ss_dssp             TTGGGGEEEEECTTCSCBCCTTCTTCEEEETT------EEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             CcCCCCeEeeccCCCCCcCCCCCCccccEECC------EEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHHccC
Confidence            357899999 6  4678999999999999843      89999999943498766 999999999999999999764

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=99.86  E-value=1.1e-21  Score=122.45  Aligned_cols=66  Identities=42%  Similarity=0.801  Sum_probs=58.3

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..++++||| +  ..+.+.|+|||||||++..      +|+||+|||.. |.... |+|||||+.|++||+++++.+
T Consensus       158 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~~  227 (228)
T 1fxy_A          158 GKITSNMFCVGFLEGGKDSCQGDSGGPVVCNG------QLQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTIAAN  227 (228)
T ss_dssp             TTCCTTEEEESCTTCSCBCCTTCTTCEEEETT------EEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHHHHT
T ss_pred             CCCCCCEEEeccCCCCCccccCccccceEECC------EEEEEEEECCC-CCCCCCCEEEEEhHHHHHHHHHHHhcc
Confidence            457899999 6  5678999999999999854      89999999987 98666 999999999999999999765

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=99.86  E-value=1.7e-21  Score=127.74  Aligned_cols=69  Identities=32%  Similarity=0.597  Sum_probs=59.6

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEe-CCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~-~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++||| +  ..+.++|+|||||||++.. .+++| +|+||+|||.. |.. .|+|||||++|++||+++|++
T Consensus       257 ~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~-~l~GIvS~G~~-C~~-~~gvyT~V~~y~~WI~~~i~~  329 (329)
T 1md8_A          257 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRW-VATGIVSWGIG-CSR-GYGFYTKVLNYVDWIKKEMEE  329 (329)
T ss_dssp             CCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEE-EEEEEEEECSS-SSS-SCEEEEEGGGTHHHHHHHHHC
T ss_pred             ccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcE-EEEEEEEECCC-cCC-CCcEEEEHHHHHHHHHHHHhC
Confidence            357899999 6  3578999999999999964 35777 99999999987 985 499999999999999999864

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=99.86  E-value=1.3e-21  Score=122.17  Aligned_cols=67  Identities=39%  Similarity=0.768  Sum_probs=58.0

Q ss_pred             CcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| + ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||+.|++||+++++.+
T Consensus       157 ~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  226 (227)
T 2psx_A          157 RQIDDTMFCAGDKAGRDSCQGDSGGPVVCNG------SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQAN  226 (227)
T ss_dssp             TTCCTTEEEECCSTTCBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHHHHHT
T ss_pred             CCCCCCEEcccCCCCCccCCCCCCcceeeCC------EEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHHHhcC
Confidence            357899999 6 5678999999999999864      89999999943398766 999999999999999999764

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.86  E-value=1.5e-21  Score=121.15  Aligned_cols=66  Identities=42%  Similarity=0.822  Sum_probs=58.9

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..++++||| +  ..+.+.|+|||||||++..      +|+||+||+.. |.... |++||||+.|++||+++|+++
T Consensus       154 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~------~l~Gi~S~g~~-c~~~~~p~vyt~v~~~~~WI~~~i~~~  223 (223)
T 4i8h_A          154 GQITSNMFCAGYLEGGKDSCQGDSGGPVVCSG------KLQGIVSWGSG-CAQKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             TTCCTTEEEESCTTSSCBCCTTCTTCEEEETT------EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             CCCCCCeEeccCCCCCCccCCCCCCCcEEECC------EEEEEEEcCCC-CCCCCCCeEEEEHHHHHHHHHHHHhcC
Confidence            457899999 6  6778999999999999965      89999999988 98766 999999999999999999764

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=99.86  E-value=9.7e-22  Score=140.62  Aligned_cols=78  Identities=35%  Similarity=0.624  Sum_probs=66.8

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++.......+++.||| +  .++.++|+|||||||++... ++| +|+||+|||.. |.... |+|||||+.|++||++
T Consensus       710 C~~~~~~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~~-~~~-~LvGIvS~G~g-C~~~~~PgVYTrVs~y~dWI~~  786 (791)
T 4dur_A          710 CNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEK-DKY-ILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEG  786 (791)
T ss_dssp             HTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEET-TEE-EEEEECCTTTC-CBBTTBCEEEEEGGGTHHHHHH
T ss_pred             hhcccccCCCCCCCeEEeccCCCCCCCCCCCcccceEEEeC-CeE-EEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHH
Confidence            44444445678999999 6  56789999999999999874 677 99999999998 98876 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +|+++
T Consensus       787 ~i~~N  791 (791)
T 4dur_A          787 VMRNN  791 (791)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99864

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=122.52  Aligned_cols=67  Identities=37%  Similarity=0.689  Sum_probs=57.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||++|++||+++++++
T Consensus       167 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  237 (238)
T 1spj_A          167 QKVTDFMLCVGHLEGGKDTCVGDSGGPLMCDG------VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIAEN  237 (238)
T ss_dssp             SCCCTTEEEEECTTCSSBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHHT
T ss_pred             CCCCCCeEEeeCCCCCCCCCCCCCCCcEEEcC------EEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHhhcC
Confidence            347899999 6  5678999999999999853      89999999943398766 999999999999999999764

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.86  E-value=1.3e-21  Score=121.87  Aligned_cols=66  Identities=42%  Similarity=0.822  Sum_probs=57.9

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||.. |.... |++||||+.|++||+++++++
T Consensus       154 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~GI~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~i~~n  223 (223)
T 3mfj_A          154 GQITSNMFCAGYLEGGKDSCQGDSGGPVVCSG------KLQGIVSWGSG-CAQKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             TTCCTTEEEESCTTSSCBCCTTCTTCEEEETT------EEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHHHHC
T ss_pred             CcCCCCEEEccCCCCCCCcCCCCcccceEECC------EEEEEEEECCC-CCCCCCCeEEEEHHHhHHHHHHHHhcC
Confidence            357899999 6  5678999999999999943      79999999987 98766 999999999999999998764

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=99.85  E-value=8.6e-22  Score=122.74  Aligned_cols=67  Identities=39%  Similarity=0.772  Sum_probs=58.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+.+.||| +  ..+.+.|+|||||||++..      .|+||+|||...|.... |+|||||+.|++||+++++++
T Consensus       157 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  227 (234)
T 3s69_A          157 LLTEYRTLCAGILEGGKDTCGGDSGGPLICNG------QFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGN  227 (234)
T ss_dssp             CCTTSCEEEEECTTCSCBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             ccCCcceEeccCCCCCCccCCCCCccceEEcC------EEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCC
Confidence            456789999 6  5688999999999999865      79999999975598766 999999999999999999765

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=99.85  E-value=1.7e-21  Score=121.91  Aligned_cols=65  Identities=35%  Similarity=0.680  Sum_probs=55.6

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecC--CCCCCCC-CcEEEEcC-CcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT--PECGIGS-PGIYTRIT-AYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~--~~c~~~~-p~vyt~v~-~~~~WI~~~~~~~   81 (82)
                      .+.++||| +  ..+.+.|+|||||||++..      +|+||+|||.  . |.... |+|||||+ +|++||+++++..
T Consensus       162 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~GI~S~g~~~~-C~~~~~p~vyt~v~~~~~~WI~~~~~~~  233 (234)
T 1orf_A          162 VIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG------VFRGVTSFGLENK-CGDPRGPGVYILLSKKHLNWIIMTIKGA  233 (234)
T ss_dssp             CCCTTEEEEECSSCCCBCCTTCTTCEEEETT------EEEEEEEECCTTC-TTCTTSCEEEEECCHHHHHHHHHHHCC-
T ss_pred             ccCCCEEEecCCCCCCcCCCCCCCCeEEECC------EEEEEEEEcCCCC-CCCCCCCCEEEEchHHHHHHHHHHHHhc
Confidence            34459999 6  4678999999999999953      8999999997  5 98765 99999999 9999999999764

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=99.85  E-value=7.8e-22  Score=123.86  Aligned_cols=67  Identities=34%  Similarity=0.706  Sum_probs=57.5

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||+.|++||+++|+++
T Consensus       169 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  239 (240)
T 1sgf_A          169 MKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANN  239 (240)
T ss_dssp             SBCCTTEEEEEECSSSEEECCCCTTCEEEETT------EEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHSC
T ss_pred             CCcCCCeEeEccCCCCCCCCCCCCcCcEEEcc------EEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHHhcC
Confidence            457899999 6  4567899999999999843      89999999943498765 999999999999999999764

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=99.85  E-value=5.1e-22  Score=132.25  Aligned_cols=69  Identities=32%  Similarity=0.610  Sum_probs=57.8

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeC-CCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNN-DTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~-~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .++++||| +  ..+.++|+|||||||++... +++| +|+||+|||.. |.. .|+|||||++|++||+++|+++
T Consensus       326 ~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~-~l~GivS~g~~-C~~-~~~vyt~V~~y~~WI~~~~~~~  398 (399)
T 1gpz_A          326 VFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRW-VATGIVSWGIG-CSR-GYGFYTKVLNYVDWIKKEMEEE  398 (399)
T ss_dssp             --CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEE-EEEEEECCCTT-TTT-TEEEEEEGGGGHHHHHHHTC--
T ss_pred             cCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeE-EEEEEEEeCCC-cCC-CCeEEEEhHHhHHHHHHHhccC
Confidence            47899999 6  34689999999999998764 4677 99999999997 985 4899999999999999999764

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=99.85  E-value=2.5e-21  Score=120.69  Aligned_cols=66  Identities=42%  Similarity=0.791  Sum_probs=57.1

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||+.|++||+++++.
T Consensus       154 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~a  223 (223)
T 2bdg_A          154 PLYHPSMFCAGGGQDQKDSCNGDSGGPLICNG------YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQA  223 (223)
T ss_dssp             TTCCTTEEEECCSTTCCBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHHHC
T ss_pred             CCCCCCeEeccCCCCCCCcCCCCCCchheEcc------EEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHhcC
Confidence            357899999 6  4678999999999999864      89999999973498766 99999999999999998863

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=99.85  E-value=2.9e-21  Score=120.26  Aligned_cols=65  Identities=40%  Similarity=0.756  Sum_probs=57.2

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       153 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~-C~~~~~p~vyt~v~~~~~WI~~~~~~  221 (222)
T 1hj8_A          153 GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNG------ELQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             TCCCTTEEEESCTTSSCBCCTTCTTCEEEETT------EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             CCCCCCeEEeccCCCCCccCCCCcccceEECC------EEEEEEeecCC-CCCCCcCcEEEEhHHhHHHHHHHhhc
Confidence            357899999 6  5678999999999999853      79999999987 98755 99999999999999999864

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=99.85  E-value=1.3e-21  Score=122.78  Aligned_cols=64  Identities=31%  Similarity=0.627  Sum_probs=55.7

Q ss_pred             CCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEee--c--CCCCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086         11 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSY--G--TPECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus        11 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~--g--~~~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      ++++||| +  ..+.+.|+|||||||++..  +++ +|+||+||  +  .. |.... |++||||+.|++||+++|
T Consensus       170 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--~~~-~l~Gi~S~~~~~g~~-C~~~~~p~vyt~V~~~~~WI~~~~  241 (241)
T 1m9u_A          170 IWDNHICVQDPAGNTGACNGDSGGPLNCPD--GGT-RVVGVTSWVVSSGLG-ACLPDYPSVYTRVSAYLGWIGDNS  241 (241)
T ss_dssp             CCTTEEEECCTTSCCBCCTTCTTCEEEEES--SSE-EEEEEEEECCBCTTS-CBCTTSCEEEEEGGGTHHHHHHHC
T ss_pred             ccCCcEEECcCCCCCeeecCcCCccEEEeC--CCE-EEEEEEEEeccCCCC-ccCCCCCEEEEEhHHhHhHHhhhC
Confidence            7899999 6  4568999999999999985  677 99999999  4  45 88755 999999999999999875

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=99.85  E-value=1.7e-21  Score=122.02  Aligned_cols=67  Identities=36%  Similarity=0.728  Sum_probs=57.9

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||++|++||+++++.+
T Consensus       166 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  236 (237)
T 2zch_P          166 QKVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG------VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIVAN  236 (237)
T ss_dssp             SBCCTTEEEEECTTCSCBCCTTCTTCEEESSS------SEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             CCCCceEEeecCCCCCCcccCCCccCeEEECC------EEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHhcC
Confidence            457899999 6  4578999999999999854      79999999983398765 999999999999999999764

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=99.85  E-value=7.1e-22  Score=123.76  Aligned_cols=67  Identities=25%  Similarity=0.432  Sum_probs=57.3

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||+.|++||+++++++
T Consensus       166 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  236 (237)
T 1gvz_A          166 EKMTEFVLCATHRDDSGSICLGDSGGALICDG------VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEKN  236 (237)
T ss_dssp             GGCCTTEEEEECSSTTCEECGGGTTCEEEETT------EEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHHHH
T ss_pred             hcCCCceEEEeeCCCCCccCCCCccCcEeeCC------EEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHHhcc
Confidence            467899999 6  4567899999999999843      79999999972398655 999999999999999999764

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=99.85  E-value=3.3e-21  Score=120.72  Aligned_cols=67  Identities=39%  Similarity=0.693  Sum_probs=57.8

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||+.|++||+++++++
T Consensus       166 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~n  236 (237)
T 1ao5_A          166 QKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKN  236 (237)
T ss_dssp             SCCCTTEEEEECTTCSCBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHHC
T ss_pred             ccCCCCEEEEccCCCCCCCCCCCCcceEEECC------EEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHHhhc
Confidence            457899999 7  4568999999999999943      89999999943398766 999999999999999999875

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=99.84  E-value=1.5e-21  Score=122.09  Aligned_cols=65  Identities=37%  Similarity=0.732  Sum_probs=56.7

Q ss_pred             CCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         11 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        11 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      +.+.||| +  ..+.+.|+|||||||++..      +|+||+||+...|.... |++||||+.|++||+++++.+
T Consensus       156 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  224 (231)
T 2aiq_A          156 LAATTLCAGILEGGKDTCKGDSGGPLICNG------QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGN  224 (231)
T ss_dssp             CCSSEEEEECTTCSCBCCTTCTTCEEEETT------EEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             CCcCcEEeccCCCCCcccCCcCCCcEEECC------EEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcCC
Confidence            7899999 6  5678999999999999953      79999999943398766 999999999999999998764

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=99.84  E-value=1.1e-21  Score=122.16  Aligned_cols=64  Identities=39%  Similarity=0.658  Sum_probs=55.7

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      ..+++.||| +  ..+.+.|+|||||||++.+  +   +|+||+|||.. |.... |++||||+.|++||++++
T Consensus       157 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--g---~l~Gi~S~g~~-C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          157 SAITNQMFCAGVSSGGKDSCQGDSGGPIVDSS--N---TLIGAVSWGNG-CARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             TTSCTTEEEECCTTCCCBCCTTCTTCEEECTT--C---CEEEEEEECSS-SSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCcceECcC--C---eEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHhhC
Confidence            347899999 6  5678999999999999863  2   79999999987 98766 999999999999999875

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=99.84  E-value=3.6e-21  Score=119.76  Aligned_cols=63  Identities=41%  Similarity=0.954  Sum_probs=56.0

Q ss_pred             CCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         11 VTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        11 i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      +.+.||| + ..+.+.|+|||||||++..      +|+||+|||.. |....|++||||++|++||++++++
T Consensus       158 ~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~------~l~GI~S~g~~-C~~~~p~vyt~V~~~~~WI~~~~~~  222 (222)
T 1eq9_A          158 VIDSHICTLTKRGEGACHGDSGGPLVANG------AQIGIVSFGSP-CALGEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             CCTTEEEECCCTTCBCCTTCTTCEEEETT------EEEEEEEECST-TTSSSCEEEEEGGGGHHHHHHTSCC
T ss_pred             CCccEEeecCCCCCeeeeCCccceEEECC------EEEEEEEECCC-cCCCCCCEEEEHHHHHHHHHHHhhC
Confidence            7889999 6 6678899999999999853      89999999987 9874599999999999999998864

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=99.84  E-value=1.3e-21  Score=121.46  Aligned_cols=66  Identities=26%  Similarity=0.486  Sum_probs=58.0

Q ss_pred             CcCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+++.||| +..+.+.|+|||||||++..      .|+||+||+.. |....|+|||||+.|++||+++++++
T Consensus       162 ~~~~~~~~Ca~~~~~~~C~GDsGgPl~~~~------~l~Gi~S~g~~-c~~~~p~vyt~v~~~~~WI~~~i~~~  228 (228)
T 3h7o_A          162 IFLSLQVFCAQKVGVSLESGDAGDPTVQQD------TLVGVAAYFPK-RPEGAPEVFTKVGSYVSWIQDIIKKK  228 (228)
T ss_dssp             SCCCSSEEEEECTTCCCCGGGTTCEEEETT------EEEEEECCCTT-CCTTCCEEEEEGGGTHHHHHHHHTTC
T ss_pred             ccCCceEEecCCCCCcCCCCCCCCcceecC------eEEEEEeecCc-CCCCCCcEEEEHHHHHHHHHHHhhcC
Confidence            357899999 75559999999999999854      79999999988 98745999999999999999999864

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=99.84  E-value=4.6e-21  Score=119.25  Aligned_cols=65  Identities=22%  Similarity=0.305  Sum_probs=57.6

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .++++||| +  ..+.+.|+|||||||++..      .|+||+||+.. |....|++||||+.|++||+++++..
T Consensus       164 ~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~------~l~Gi~S~g~~-C~~~~p~vyt~v~~~~~WI~~~i~~~  231 (235)
T 3h7t_A          164 YIYDGVFCAGGEYDETYIGYGDAGDPAVQNG------TLVGVASYISS-MPSEFPSVFLRVGYYVLDIKDIISGK  231 (235)
T ss_dssp             GCSTTEEEECBTTTTBBCCTTCTTCEEEETT------EEEEEECCCTT-CCTTSCEEEEEGGGGHHHHHHHHTTC
T ss_pred             cccCCeEecCCCCCCCccccCCCCCceeeCC------eEEEEEEecCC-CCCCCCceEEEHHHHHHHHHHHHhCC
Confidence            48899999 6  4488999999999999944      79999999988 98844999999999999999999865

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=99.84  E-value=5.7e-21  Score=119.02  Aligned_cols=66  Identities=44%  Similarity=0.778  Sum_probs=56.2

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |++||||+.|++||++++++
T Consensus       153 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 1lo6_A          153 GQITQNMLCAGDEKYGKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA  222 (223)
T ss_dssp             TTCCTTEEEEECTTTCCBCCTTTTTCEEEETT------EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred             CCCCCCeEEeecCCCCCeeccccCCCcEEeCC------EEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhcc
Confidence            357899999 6  4578999999999999854      79999999943398766 99999999999999999875

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=99.84  E-value=6.3e-21  Score=118.99  Aligned_cols=68  Identities=35%  Similarity=0.718  Sum_probs=58.1

Q ss_pred             cCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecC-CCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~-~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+++.||| + ..+.+.|+|||||||++...   + +|+||+||+. ..|....|.+||||+.|++||+++++.+
T Consensus       159 ~~~~~~~Ca~~~~~~~~C~GDSGgPl~~~~~---~-~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~~~~  229 (230)
T 2hlc_A          159 IIVESTICGDTSDGKSPCFGDSGGPFVLSDK---N-LLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGIK  229 (230)
T ss_dssp             SSCTTEEEECCTTSCBCCTTCTTCEEEEGGG---T-EEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHCCC
T ss_pred             cccCCeEEecCCCCCCcCCCCCCCeeEECcC---C-EEEEEEEEeCCCCCCCCCCCEEEEhHHhHHHHHHhhCcC
Confidence            57899999 6 67789999999999998752   3 8999999987 2286555999999999999999999765

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=99.84  E-value=6.4e-21  Score=118.87  Aligned_cols=66  Identities=41%  Similarity=0.761  Sum_probs=56.8

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+++.||| +  ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||+.|++||+++++++
T Consensus       154 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  223 (224)
T 2qxi_A          154 LLENSMLCAGIPDSKKNACNGDSGGPLVCRG------TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKH  223 (224)
T ss_dssp             GCCTTEEEEECTTCCCBCCTTCTTCEEEETT------EEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHHHT
T ss_pred             cCCCCeEEecCCCCCCccCCCCccccEEECC------EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhcc
Confidence            47889999 6  4578999999999999943      79999999943398765 999999999999999999764

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=99.83  E-value=4.2e-21  Score=134.48  Aligned_cols=69  Identities=36%  Similarity=0.743  Sum_probs=50.5

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..+++.||| +  .++.++|+|||||||++.. +++| +|+||+|||.. |.... |+|||||+.|++||+++++.
T Consensus       552 ~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~-~~~~-~lvGIvS~G~~-C~~~~~P~vyT~V~~y~~WI~~~~~~  624 (625)
T 2f83_A          552 HKITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVW-HLVGITSWGEG-CAQRERPGVYTNVVEYVDWILEKTQA  624 (625)
T ss_dssp             SCCCTTBCCC----------CCCTTCEEEEEE-TTEE-EEEEEEEECCC-----CCCCEEEEGGGGHHHHHHTC--
T ss_pred             CCCCCCeEEeecCCCCCcCCCCCcccceEEEE-CCeE-EEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            457899999 6  4578999999999999986 4788 99999999997 98766 99999999999999998853

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=99.83  E-value=4.7e-21  Score=119.45  Aligned_cols=65  Identities=43%  Similarity=0.813  Sum_probs=55.6

Q ss_pred             CcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          9 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         9 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..+++.||| + ..+.+.|+|||||||++..      +|+||+|||...|.... |+|||||++|++||+++++
T Consensus       158 ~~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~------~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          158 GKITEGMVCAGSSNGADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             TTCCTTEEEEECTTCCBCCTTCTTCEEEETT------EEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             CCCCCCEEeecCCCCCeecCCCCCchheECC------EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            357899999 6 4578999999999999853      79999999943398666 9999999999999999874

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.83  E-value=5.7e-21  Score=132.56  Aligned_cols=68  Identities=35%  Similarity=0.719  Sum_probs=44.3

Q ss_pred             CCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         12 TETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        12 ~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+.||| +  .++.++|+|||||||++...+++| +|+||+|||.. |.... |+|||||++|++||+++++..
T Consensus       487 ~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~-~lvGIvS~G~~-C~~~~~PgVYTrVs~y~~WI~~~i~~~  558 (565)
T 2xrc_A          487 EKEMECAGTYDGSIDACKGDSGGPLVCMDANNVT-YVWGVVSWGEN-CGKPEFPGVYTKVANYFDWISYHVGRP  558 (565)
T ss_dssp             TTTEEEEEEC----------CCCEEEEECTTCCE-EEEEEECC-------CCCCEEEEEGGGGHHHHHHHC---
T ss_pred             CCceEEeCCCCCCCccCCCccccceEEEeCCCcE-EEEEEEeeCCC-CCCCCCCEEEEEHHHHHHHHHHHhccc
Confidence            445999 6  445799999999999998766888 99999999987 98766 999999999999999998754

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=99.83  E-value=2.6e-21  Score=120.78  Aligned_cols=66  Identities=38%  Similarity=0.767  Sum_probs=56.0

Q ss_pred             cCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC-CCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~-~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+++.||| + ..+.+.|+|||||||++..      +|+||+|||.. .|....|+|||||+.|++||+++++.+
T Consensus       157 ~~~~~~~Ca~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~~~~C~~~~p~vyt~V~~~~~WI~~~~~~~  225 (226)
T 1azz_A          157 IVTDGNICIDSTGGKGTCNGDSGGPLNYNG------LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTGIT  225 (226)
T ss_dssp             CCCTTEEEECCTTTCBCCTTCTTCEEEETT------EEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHCCC
T ss_pred             cCCCceEeecCCCCCccCCCCCCcceEECC------EEEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHhCCC
Confidence            47899999 6 6678999999999999632      89999999972 287645999999999999999998753

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=99.83  E-value=6e-21  Score=118.62  Aligned_cols=65  Identities=32%  Similarity=0.524  Sum_probs=57.2

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ....+.||| +  ..+.+.|+|||||||++..      +|+||+|||.. |... |++||||+.|++||+++++++
T Consensus       159 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~------~l~Gi~S~g~~-c~~~-p~vyt~v~~~~~WI~~~i~~n  226 (226)
T 4ag1_A          159 DFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG------VAQGIVSYGRS-DAKP-PAVFTRISHYRPWINQILQAN  226 (226)
T ss_dssp             TCCTTTEEEESCTTSCCBCCTTCTTCEEEETT------EEEEEEEECBT-TCCS-CEEEEEHHHHHHHHHHHHHHC
T ss_pred             CcCccceEeeccCCCCCcCccCCCCCceEEcC------EEEEEEEECCC-CCCC-CCEEEEhHHHHHHHHHHHhcC
Confidence            345789999 6  5678999999999999954      89999999987 8766 999999999999999999865

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=99.83  E-value=2e-21  Score=130.69  Aligned_cols=68  Identities=40%  Similarity=0.663  Sum_probs=57.2

Q ss_pred             CCCCeee-c-CCCCCCCcCCCCceeEEEe-----CCCceEEEEEEEeec-CCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086         11 VTETKFL-V-FPGKDSCNGDSGGPLVWKN-----NDTRKHYLIGLVSYG-TPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        11 i~~~~~C-~-~~~~~~C~gdsGgPl~~~~-----~~~~~~~l~Gi~s~g-~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      +..+||| + ..+.++|+|||||||++..     .+++| +|+||+||| .. |+... |+|||||+.|++||+++++.
T Consensus       298 ~~~~~iCAg~~~g~d~C~GDSGGPL~~~~~~~~~~~~~~-~l~GIvS~G~~~-Cg~~~~PgVYTrVs~y~~WI~~~i~~  374 (408)
T 2xxl_A          298 VPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKM-VEFGIVSQGVVT-CGQISLPGLYTNVGEYVQWITDTMAS  374 (408)
T ss_dssp             CCTTEEEECCSCSSSGGGSCTTCEEEEEECCTTCSSCEE-EEEEEEEECCCC-TTSCCCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCceEeecCCCCCccCCCcccChhhcCccceEEECCEE-EEEEEEEECCCC-CCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence            5669999 6 5578999999999995432     23577 999999999 55 98876 99999999999999999875

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.82  E-value=3.1e-20  Score=126.47  Aligned_cols=72  Identities=22%  Similarity=0.414  Sum_probs=60.2

Q ss_pred             CcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC-CCCC---------CC-C------cEEEEcCC
Q psy17086          9 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGI---------GS-P------GIYTRITA   69 (82)
Q Consensus         9 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~-~c~~---------~~-p------~vyt~v~~   69 (82)
                      ..++++||| + ..+.++|+|||||||++.. +++| +|+||+|||.. .|..         .. |      .+||||++
T Consensus       414 ~~~~~~~iCag~~~~~~~C~GDSGGPL~~~~-~~~~-~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~  491 (509)
T 2odp_A          414 EVVTDQFLCSGTQEDESPCKGESGGAVFLER-RFRF-FQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFR  491 (509)
T ss_dssp             GTSCTTEEEECCTTCCCCCGGGTTCEEEEEE-TTEE-EEEEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGG
T ss_pred             ccccCCEEEeCCCCCCcccCCCccCceEEEE-CCeE-EEEEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHH
Confidence            358899999 7 6778999999999999987 4788 99999999972 3962         22 5      49999999


Q ss_pred             cHHHHHHHhhccC
Q psy17086         70 YLPWIIARMAYEV   82 (82)
Q Consensus        70 ~~~WI~~~~~~~~   82 (82)
                      |++||+++++.++
T Consensus       492 ~~~WI~~~~~~~~  504 (509)
T 2odp_A          492 MQPWLRQHLGDVL  504 (509)
T ss_dssp             CHHHHHHHHTTTS
T ss_pred             HhHHHHHHhCCcc
Confidence            9999999998654

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=99.82  E-value=2.5e-20  Score=115.60  Aligned_cols=63  Identities=35%  Similarity=0.599  Sum_probs=55.2

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      ....+.||| +  ....+.|+|||||||++..      +|+||+|||.. |... |++||||+.|++||+++|+
T Consensus       159 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~------~l~Gi~S~g~~-c~~~-p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          159 YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG------VAHGIVSYGHP-DAKP-PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             CCCTTTEEEECCTTSCCBCCTTTTTCEEEETT------EEEEEEEECCT-TCCS-CEEEEEHHHHHHHHHHHHC
T ss_pred             ccCcCCEEEecCCCCCCeeccCCCCCeEEEcc------eeeEEEEECCC-CCCC-CcEEEEHHHhHHHHHHHhC
Confidence            345789999 6  5568999999999999954      89999999987 8765 9999999999999999874

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=99.82  E-value=1.7e-20  Score=116.98  Aligned_cols=62  Identities=34%  Similarity=0.533  Sum_probs=51.9

Q ss_pred             CCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         11 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        11 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+.||| +  ..+.+.|+|||||||++..      +|+||+|||   |.... |++||||+.|++||+++++++
T Consensus       162 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g---c~~~~~p~vyt~v~~~~~WI~~~~~~~  227 (227)
T 1iau_A          162 DSTIELCVGDPEIKKTSFKGDSGGPLVCNK------VAQGIVSYG---RNNGMPPRACTKVSSFVHWIKKTMKRY  227 (227)
T ss_dssp             CTTTEEEESCTTSCCBCCTTCTTSEEEETT------EEEEEEEEE---CTTSCSCEEEEEGGGGHHHHHHHHHC-
T ss_pred             CCCcEEEeECCCCCCeeeecCCCchheEee------EEEEEEeEe---cCCCCCCeEEEEHHHHHHHHHHHHhhC
Confidence            3455999 6  3468999999999999953      899999998   65544 999999999999999999763

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.82  E-value=4e-20  Score=125.41  Aligned_cols=70  Identities=29%  Similarity=0.591  Sum_probs=56.5

Q ss_pred             cCCCCeee-c-CC---CCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC-CCC----CCC-Cc----EEEEcCCcHHHH
Q psy17086         10 SVTETKFL-V-FP---GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECG----IGS-PG----IYTRITAYLPWI   74 (82)
Q Consensus        10 ~i~~~~~C-~-~~---~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~-~c~----~~~-p~----vyt~v~~~~~WI   74 (82)
                      .++++||| + ..   +.++|+|||||||++.. +++| +|+||+|||.. .|.    ... |+    |||||++|++||
T Consensus       408 ~~~~~~iCag~~~~~~~~~~C~GDSGGPL~~~~-~~~~-~l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI  485 (497)
T 1rrk_A          408 VVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRF-IQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWL  485 (497)
T ss_dssp             TSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEE-TTEE-EEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHH
T ss_pred             cCCCCeEEeCCCCCCCCCcCCCCCCCCeeEEEe-CCEE-EEEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHH
Confidence            47899999 6 22   57899999999999987 4788 99999999972 398    344 75    999999999999


Q ss_pred             HHHhhcc
Q psy17086         75 IARMAYE   81 (82)
Q Consensus        75 ~~~~~~~   81 (82)
                      +++++.+
T Consensus       486 ~~~~~~~  492 (497)
T 1rrk_A          486 KEKLQDE  492 (497)
T ss_dssp             HHHTTTS
T ss_pred             HHHhCcc
Confidence            9999754

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=99.81  E-value=6.8e-20  Score=113.79  Aligned_cols=63  Identities=33%  Similarity=0.536  Sum_probs=55.4

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ...+.||| +  ....+.|+|||||||++..      +|+||+|||.. |... |++||||+.|++||+++|++
T Consensus       162 ~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~------~l~Gi~S~g~~-c~~~-p~vyt~V~~~~~WI~~~i~~  227 (227)
T 3fzz_A          162 YNRANEICVGDSKIKGASFEEDSGGPLVCKR------AAAGIVSYGQT-DGSA-PQVFTRVLSFVSWIKKTMKH  227 (227)
T ss_dssp             CCTTTEEEECCCSSCBCCTTTTTTCEEEETT------EEEEEEEECCT-TCSS-SEEEEEGGGTHHHHHHHHTC
T ss_pred             cCCCceEEEeCCCCCCcccccCCccceEEec------CCcEEEEECCC-CCCC-CeEEEEhHHhHHHHHHHHhC
Confidence            34789999 6  5678899999999999965      89999999987 8755 99999999999999999864

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=99.81  E-value=3e-20  Score=115.72  Aligned_cols=63  Identities=35%  Similarity=0.619  Sum_probs=52.2

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ...+.||| +  ..+.+.|+|||||||++..      +|+||+|||.  |....|++||||+.|++||+++|+.
T Consensus       159 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~S~g~--~~~~~p~vyt~V~~~~~WI~~~~~s  224 (224)
T 1cgh_A          159 YDPRRQICVGDRRERKAAFKGDSGGPLLCNN------VAHGIVSYGK--SSGVPPEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             CCTTTEEEECCTTSCCBCCTTCTTCEEEETT------EEEEEEEECC--TTCCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             CCCcceEeeccCCCCCeEeeCCCccceEEcc------EEEEEEEEEC--CCCCCCeEEEEHHHhHHHHHHHhhC
Confidence            34566999 6  3468999999999999954      8999999997  3333499999999999999999863

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=99.80  E-value=1e-19  Score=113.52  Aligned_cols=63  Identities=41%  Similarity=0.679  Sum_probs=52.2

Q ss_pred             CcCCCCeee-c-CCC-CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V-FPG-KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~-~~~-~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++||| + ..+ ...|+|||||||++..      +|+||+|||   |.... |+|||||+.|++||++++++
T Consensus       159 ~~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~------~l~Gi~S~g---c~~~~~p~vyt~V~~y~~WI~~~~~~  225 (227)
T 1euf_A          159 NYIPFTQICAGDPSKRKNSFSGDSGGPLVCNG------VAQGIVSYG---RNDGTTPDVYTRISSFLSWIHSTMRR  225 (227)
T ss_dssp             TCCTTTEEEESCTTSCCBCCTTCTTCEEEETT------EEEEEEEEC---CTTCCSCEEEEEGGGTHHHHHHHTC-
T ss_pred             CcCCCcEEEccCCCCCCcccccCCCCceEECC------EEEEEEEEe---CCCCCCCeEEEEHHHhHHHHHHHHhh
Confidence            357889999 6 332 6678999999999954      899999998   65545 99999999999999999864

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.80  E-value=1.1e-19  Score=127.82  Aligned_cols=70  Identities=27%  Similarity=0.539  Sum_probs=59.2

Q ss_pred             CcCCCCeee-c-CC---CCCCCcCCCCceeEEEeCCCceEEEEEEEeecC--CCCCC---CC-C-----cEEEEcCCcHH
Q psy17086          9 ISVTETKFL-V-FP---GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT--PECGI---GS-P-----GIYTRITAYLP   72 (82)
Q Consensus         9 ~~i~~~~~C-~-~~---~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~--~~c~~---~~-p-----~vyt~v~~~~~   72 (82)
                      ..++++||| + ..   +.++|+|||||||++... ++| +|+||+|||.  . |..   .. |     ++||||+.|++
T Consensus       649 ~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~~-~~~-~lvGIvS~G~~~~-C~~~~~~~~p~~~~~~vyt~V~~~~~  725 (741)
T 3hrz_D          649 EVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR-SRF-IQVGVISWGVVDV-CKNQKRQKQVPAHARDFHINLFQVLP  725 (741)
T ss_dssp             GTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEET-TEE-EEEEEEEEESSCC-CC------CCCTTCEEEEEEGGGSHH
T ss_pred             cccCCCeEecCCcCCCCCCCcCcCcccCceEEeeC-CeE-EEEEEEeecCCcc-cCCcccccCCCCCccceEEEhHHhHH
Confidence            468999999 6 32   688999999999999874 788 9999999997  5 987   34 8     99999999999


Q ss_pred             HHHHHhhcc
Q psy17086         73 WIIARMAYE   81 (82)
Q Consensus        73 WI~~~~~~~   81 (82)
                      ||+++++++
T Consensus       726 WI~~~i~~~  734 (741)
T 3hrz_D          726 WLKEKLQDE  734 (741)
T ss_dssp             HHHHHTTTS
T ss_pred             HHHHHhcCC
Confidence            999999873

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=99.80  E-value=1.5e-19  Score=112.47  Aligned_cols=61  Identities=30%  Similarity=0.595  Sum_probs=52.9

Q ss_pred             Ceee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         14 TKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        14 ~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      +||| +  ..+.+.|+|||||||++.+      +|+||+||+...|... |++||||+.|++||++++++.
T Consensus       157 ~~~Ca~~~~~~~~~C~GDSGgPl~~~g------~l~Gi~S~g~~~C~~~-p~vyt~V~~~~~WI~~~~~~~  220 (225)
T 1a7s_A          157 NNVCTGVLTRRGGICNGDGGTPLVCEG------LAHGVASFSLGPCGRG-PDFFTRVALFRDWIDGVLNNP  220 (225)
T ss_dssp             TEEEEECSSSSCBCCTTCTTCEEEETT------EEEEEEEEECSSTTSS-CEEEEEGGGGHHHHHHHHHSC
T ss_pred             CceEEeccCCCCCcccCCCcchheeCC------EEEEEEEEccCCcCCC-CcEEEEhHHhHHHHHHHhcCC
Confidence            7999 6  4468999999999999974      8999999994339877 999999999999999998753

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=99.79  E-value=1.9e-19  Score=115.69  Aligned_cols=67  Identities=15%  Similarity=0.227  Sum_probs=55.0

Q ss_pred             CcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..++++||| + ..+  .|.+||||||++.. +++| +|+||+||+.  |.... |+|||||+.|++||+++|++.
T Consensus       209 ~~~~~~~~Ca~~~~~--~~~gDSGgPlv~~~-~~~~-~l~GIvS~g~--c~~~~~p~vyt~V~~y~~WI~~~~~~~  278 (283)
T 3f1s_B          209 VTVTTRTYCERSSVA--AMHWMDGSVVTREH-RGSW-FLTGVLGSQP--VGGQAHMVLVTKVSRYSLWFKQIMNAH  278 (283)
T ss_dssp             SCCCTTEEEEECSSC--GGGBCTTCEEEEEC-SSCE-EEEEEECCCS--GGGCSSEEEEEEGGGGHHHHHHHHTC-
T ss_pred             CCCCCCeEcccCCCC--CCCCCCCCcEEEEE-CCEE-EEEEEEEeCC--CCCCCcceEEEEhHHhHHHHHHHhhcc
Confidence            458899999 6 333  56779999999975 4788 9999999975  55444 999999999999999999764

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=99.79  E-value=2.6e-19  Score=111.00  Aligned_cols=60  Identities=25%  Similarity=0.563  Sum_probs=50.7

Q ss_pred             Ceee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         14 TKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        14 ~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      .||| +  ..+.+.|+|||||||++..      +|+||+||+.+.|.... |++||||+.|++||+++++
T Consensus       155 ~~~Ca~~~~~~~~~C~GDSGgPl~~~~------~l~Gi~S~~~g~C~~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          155 SNVCTLVRGRQAGVCFGDSGSPLVCNG------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             TSEEEECTTSCCBCCTTCTTCEEEETT------EEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ceeeeccCCCCCeeCCCcCCCceEEcc------EEEEEEEeCCccCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            3899 6  3378999999999999854      89999999432388766 9999999999999999874

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=99.76  E-value=1.4e-18  Score=107.70  Aligned_cols=61  Identities=28%  Similarity=0.579  Sum_probs=51.5

Q ss_pred             CCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         13 ETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        13 ~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      +.||| +  ..+.+.|+|||||||++..      +|+||+||+...|.... |++||||+.|++||+++|+
T Consensus       157 ~~~~Ca~~~~~~~~~C~GDSGgPL~~~~------~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          157 PHNICTFVPRRKAGICFGDSGGPLICDG------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             TTEEEEECSSSSCBCCTTCTTCEEEETT------EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CceeeeccCCCCCCCCCCCCCCeeEECC------EEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence            45999 6  3478899999999999943      89999999662288766 9999999999999999875

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.76  E-value=2.1e-18  Score=112.01  Aligned_cols=66  Identities=15%  Similarity=0.238  Sum_probs=54.2

Q ss_pred             CcCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          9 ISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         9 ~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..++++||| +.. ...|.+||||||++.. +++| +|+||+||+.  |.... |+|||||+.|++||+++|+
T Consensus       250 ~~~~~~~~Ca~~~-~~~~~gDsGgPl~~~~-~~~~-~l~Gi~S~g~--~~~~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          250 VTVTTRTYCERSS-VAAMHWMDGSVVTREH-RGSW-FLTGVLGSQP--VGGQAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             CCCCTTEEEEECS-CCCCCCCTTCEEEEEE-TTEE-EEEEEECCCC--SSCCTTEEEEEEGGGCHHHHHHHHC
T ss_pred             CcCCCceeECCCC-CCCcCCCCCCCEEEec-CCEE-EEEEEEEECC--CCCCCcceEEEEhHHhHHHHHHHhC
Confidence            357899999 622 2367889999999986 4788 9999999975  55444 9999999999999999874

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.60  E-value=9.3e-17  Score=99.19  Aligned_cols=60  Identities=20%  Similarity=0.283  Sum_probs=49.5

Q ss_pred             CCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhh
Q psy17086         13 ETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        13 ~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      +...| . ..+.+.|+|||||||++.+  +   +|+||+||+.. |. ..|.+||||+.|++||+++++
T Consensus       153 ~~~~c~~~~~~~~~C~GDSGgPl~~~~--g---~lvGi~S~g~~-c~-~~p~v~t~v~~~~~WI~~~~~  214 (215)
T 1p3c_A          153 TREDTNLAYYTIDTFSGNSGSAMLDQN--Q---QIVGVHNAGYS-NG-TINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             CEECSSEEEECCCCCTTCTTCEEECTT--S---CEEEECCEEEG-GG-TEEEEEBCCHHHHHHHHHHHT
T ss_pred             CcccchheeeccccCCCCCCCeeEccC--C---eEEEEEecccC-CC-ccCceeEechHHHHHHHHHhc
Confidence            34456 3 3467899999999999853  2   79999999987 87 349999999999999999875

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.48  E-value=4e-15  Score=90.40  Aligned_cols=47  Identities=30%  Similarity=0.321  Sum_probs=40.1

Q ss_pred             CCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHH
Q psy17086         24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   77 (82)
Q Consensus        24 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~   77 (82)
                      .|+|||||||++..      .|+||+||+.. |.... |++||+|+.|++||+..
T Consensus       136 ac~GDSGGPlv~~~------~~vGI~s~g~~-~~~~~~p~vyt~v~~~~~wI~~~  183 (185)
T 2qa9_E          136 AEPGDSGGPLYSGT------RAIGLTSGGSG-NCSSGGTTFFQPVTEALSAYGVS  183 (185)
T ss_dssp             CCTTCTTCEEEETT------EEEEEEEEEEE-ETTTEEEEEEEEHHHHHHHHTCE
T ss_pred             CCCCCccceEEECC------EEEEEEEecCC-CCCCCCcEEEEEHHHHHHhhCcE
Confidence            49999999999753      79999999976 54444 99999999999999754

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.44  E-value=8.3e-14  Score=89.44  Aligned_cols=58  Identities=21%  Similarity=0.351  Sum_probs=45.3

Q ss_pred             cCCCCeee-cCC--CCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCC---CCcEEEEcCCcHH
Q psy17086         10 SVTETKFL-VFP--GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG---SPGIYTRITAYLP   72 (82)
Q Consensus        10 ~i~~~~~C-~~~--~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~---~p~vyt~v~~~~~   72 (82)
                      .+.+.||| +..  ..++|.|||||||++..    + +|+||+|||...|...   .|+|||||+.|.+
T Consensus       172 ~~~~~~iCag~~~~~gdtC~gdsGgPl~~~~----~-~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          172 GAGTTHLNVQWQPSGGVTEPGSSGSPIYSPE----K-RVLGQLHGGPSSCSATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             SSCSSEEEEECCTTSCCCCTTCTTCEEECTT----S-CEEEEEEECSCCTTCCGGGSEEEEEEHHHHHH
T ss_pred             cccCCeEEEeeecCCCCCccCcccCCcEeeC----C-EEEEEEeecCcccCCCCCCCCceEEEeeeeec
Confidence            46789999 632  34799999999999742    3 7999999997449875   4999999976543

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.24  E-value=1.9e-12  Score=79.04  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=40.6

Q ss_pred             CCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCC--CCCCcE-EEEcCCcHHHHHHHhh
Q psy17086         13 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG--IGSPGI-YTRITAYLPWIIARMA   79 (82)
Q Consensus        13 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~--~~~p~v-yt~v~~~~~WI~~~~~   79 (82)
                      ..++|  .+.+.|+|||||||+..+  +   .|+||+||+.. |.  ...+++ |+  +.|++||+++++
T Consensus       140 ~~~~~--~~~~~~~GdSGGPl~~~~--g---~lvGI~s~g~~-~~~~~~~~~v~~~--~~~~~wI~~~~~  199 (200)
T 2w7s_A          140 GTFME--FDAYAQPGNSGSPVLNSK--H---ELIGILYAGSG-KDESEKNFGVYFT--PQLKEFIQNNIE  199 (200)
T ss_dssp             TTEEE--ECSCCCTTCTTCEEECTT--S---CEEEEEEEEC-----CCCEEEEECC--HHHHHHHHHTSC
T ss_pred             CCEEE--EcceeCCCCccCeEECcC--C---EEEEEEecccc-CCCCccceeeecH--HHHHHHHHhhcc
Confidence            34566  234789999999999643  2   79999999987 64  222566 56  889999999875

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.17  E-value=5.1e-12  Score=77.03  Aligned_cols=59  Identities=17%  Similarity=0.301  Sum_probs=42.5

Q ss_pred             CCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC--CCCCCCCcEEEEcCCcHHHHHHHhh
Q psy17086         13 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP--ECGIGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        13 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~--~c~~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..++|  .+.+.|+|||||||+...    + .|+||+|++..  .|....+.+|.. +.|++||++++.
T Consensus       143 ~~~~~--~~~~~~~GdSGGPl~~~~----g-~lvGI~s~g~~~~~~~~~~~~~~~~-~~~~~wI~~~~~  203 (204)
T 2vid_A          143 GSSIV--YSAHTESGNSGSPVLNSN----N-ELVGIHFASDVKNDDNRNAYGVYFT-PEIKKFIAENID  203 (204)
T ss_dssp             TTEEE--ECCCCCGGGTTCEEECTT----S-CEEEEEEEECC---CCCCEEEECCC-HHHHHHHHHHSC
T ss_pred             CCeEE--EecccCCCCccCcEECCC----C-eEEEEEecCccCCCcccccceeEeC-HHHHHHHHhhcC
Confidence            45666  235789999999999642    2 79999999974  255433345444 889999999875

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.14  E-value=8.1e-12  Score=75.54  Aligned_cols=46  Identities=33%  Similarity=0.464  Sum_probs=38.5

Q ss_pred             CCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHH
Q psy17086         24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWII   75 (82)
Q Consensus        24 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~   75 (82)
                      .|.|||||||++.+      .++||+||+...|....|++|++|+.|++|+.
T Consensus       132 ~~~GDSGGPlv~~~------~~vGI~s~g~~~~~~~~~~v~~~v~~~~~~l~  177 (181)
T 2sga_A          132 AQPGDSGGSLFAGS------TALGLTSGGSGNCRTGGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             CCTTCTTCEEEETT------EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             cCCCCCCCEEEECC------EEEEEEEeeCCCCcCCCceEEEEHHHHHHhcC
Confidence            56899999999754      79999999875365534999999999999984

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.09  E-value=2.2e-11  Score=77.98  Aligned_cols=58  Identities=14%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             CCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         13 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        13 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++|  .+.+.|+|||||||+...    + .|+||+|||.. |.. .+++|+ ++.|++||++.++.
T Consensus       155 ~~~i~--~~~~~c~GdSGGPLv~~~----g-~lvGIvS~G~~-~~~-~~~~~~-~~~~~~wI~~~i~~  212 (274)
T 2o8l_A          155 GEAMQ--YDLSTTGGNSGSPVFNEK----N-EVIGIHWGGVP-NEF-NGAVFI-NENVRNFLKQNIED  212 (274)
T ss_dssp             TTEEE--ESCCCCTTCTTCEEECTT----S-CEEEEEEEEET-TTE-EEEEEC-CHHHHHHHHHHCTT
T ss_pred             CCeEE--eCcccCCCCchhheeccC----C-eEEEEEeCccc-CCC-CceEEe-cHHHHHHHHHHHhh
Confidence            34555  235789999999999642    2 79999999987 764 255554 78899999988753

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.08  E-value=2.3e-11  Score=77.68  Aligned_cols=58  Identities=14%  Similarity=0.244  Sum_probs=43.6

Q ss_pred             CCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         13 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        13 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++|  ...+.|+|||||||+...    + .|+||+|||.. |.. .+++|+ ++.|++||++.++.
T Consensus       155 ~~~i~--~~~~~c~GdSGGPLv~~~----g-~lvGIvS~G~~-~~~-~~~~~~-~~~~~~wI~~~i~~  212 (268)
T 1wcz_A          155 GEAMQ--YDLSTTGGNSGSPVFNEK----N-EVIGIHWGGVP-NEF-NGAVFI-NENVRNFLKQNIED  212 (268)
T ss_dssp             TTEEE--ESBCCCTTCTTCEEECTT----S-CEEEEEEEEET-TTE-EEEEEC-CHHHHHHHHHHCTT
T ss_pred             CCeEE--EecccCCCCccCeEEccC----C-EEEEEEeCCcc-CCc-ceeEEc-CHHHHHHHHHHHHh
Confidence            34565  235789999999999632    2 79999999987 764 255555 68899999988753

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=98.65  E-value=2.8e-08  Score=60.48  Aligned_cols=54  Identities=22%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             CCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHH
Q psy17086         13 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI   74 (82)
Q Consensus        13 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI   74 (82)
                      .+|+|  .+...|.|||||||+...      .++||.|++...|....|.+|++|..+++.+
T Consensus       129 ~~~i~--t~~~~~~GdSGgpl~~~~------~~vGi~s~~~~~~~~~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          129 YNMVR--TTACSAGGDSGGAHFAGS------VALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEEEE--ECCCCCTTCTTCEEEETT------EEEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             eeeEE--eccccCCCCCCCeEEECC------EEEEEEEeeCCCCCCCCceEEEEHHHHHHHc
Confidence            45677  124578999999999754      7999999987547765599999998887654

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=98.65  E-value=1.7e-08  Score=63.16  Aligned_cols=48  Identities=23%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCC-CCC-CcEEEEcCCcHHHHH
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGS-PGIYTRITAYLPWII   75 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~-~~~-p~vyt~v~~~~~WI~   75 (82)
                      .+.|+|||||||+...  +   .|+||+||+.. |. ... ..+.+.|...+.|+.
T Consensus       188 ~~~c~GdSGGPl~~~~--g---~lvGI~s~g~~-c~~~~~~~~~~~~i~~~~~~~l  237 (242)
T 1agj_A          188 GFTVPGNSGSGIFNSN--G---ELVGIHSSKVS-HLDREHQINYGVGIGNYVKRII  237 (242)
T ss_dssp             CCCCGGGTTCEEECTT--S---EEEEEEEEEEE-CSSTTCEEEEEEECCHHHHHHH
T ss_pred             CCcCCCCCchHhcccC--C---EEEEEEecccc-ccCcCCCceeeEEehHHHHHHH
Confidence            4689999999999643  2   89999999987 86 333 778889985555443

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=98.61  E-value=1.4e-08  Score=63.04  Aligned_cols=38  Identities=26%  Similarity=0.167  Sum_probs=30.3

Q ss_pred             CCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCC
Q psy17086         13 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI   58 (82)
Q Consensus        13 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~   58 (82)
                      ..|+|.     .|.|||||||++.. ++++ +|+||+|||.. |..
T Consensus       158 ~~~~Ca-----~~~GDSGGPlv~~~-~g~~-~lvGIvS~G~g-c~~  195 (218)
T 3cp7_A          158 QGIPCN-----MTGGSSGGPWFLGN-GTGG-AQNSTNSYGYT-FLP  195 (218)
T ss_dssp             EEEECC-----CCTTCTTCEEEESS-SSSS-CEEEECCEEET-TEE
T ss_pred             EEecCC-----CCCCCcCCeeEEcc-CCCe-EEEEEEccccC-CCC
Confidence            378892     26799999999874 4566 89999999987 864

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=98.40  E-value=5.8e-08  Score=59.39  Aligned_cols=43  Identities=30%  Similarity=0.498  Sum_probs=35.5

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHH
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI   74 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI   74 (82)
                      .|||||||++..      .++||.|++...|....|.+|++|..+++|.
T Consensus       134 ~GDSGgpl~~~~------~~vGi~s~~~~~c~~~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          134 PGDSGGSLLAGN------QAQGVTSGGSGNCRTGGTTFFQPVNPILQAY  176 (189)
T ss_dssp             TTCTTCEEEETT------EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             CCCccCeEEECC------EEEEEEeecCCCCCCCCcEEEEEHHHHHHHC
Confidence            799999999632      7999999986536654599999999998886

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.34  E-value=4.7e-08  Score=59.71  Aligned_cols=41  Identities=34%  Similarity=0.574  Sum_probs=32.5

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHH
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLP   72 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~   72 (82)
                      .|||||||++..      .++||+||+...|....+.+|++|..+++
T Consensus       137 ~GDSGgpl~~~~------~~vGi~s~g~~~c~~~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          137 GGDSGGPWLTGS------QAQGVTSGGTGDCRSGGITFFQPINPLLS  177 (186)
T ss_dssp             TTCTTCEEEETT------EEEEEEEEEEEETTTEEEEEEEEHHHHHH
T ss_pred             CCCccCeEEECC------EEEEEEeecCCCCCCCCcEEEEEHHHHHH
Confidence            699999999633      79999999864376555899999876554

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=98.20  E-value=7.7e-07  Score=54.63  Aligned_cols=57  Identities=19%  Similarity=0.160  Sum_probs=36.7

Q ss_pred             CCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEc-CCcHHHHHHH
Q psy17086         13 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRI-TAYLPWIIAR   77 (82)
Q Consensus        13 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v-~~~~~WI~~~   77 (82)
                      ..++|  .+...|+|||||||+..+  |   .|+||+||+....+.. -..|+.+ ..+++|++..
T Consensus       144 ~~~i~--~~~~~~~GdSGGPlv~~~--g---~lvGI~s~g~~~~~~~-~~~~~~~~~~i~~f~~~~  201 (210)
T 2as9_A          144 DNILN--FDAYIEPGNSGSPVLNSN--N---EVIGVVYGGIGKIGSE-YNGAVYFTPQIKDFIQKH  201 (210)
T ss_dssp             TTEEE--EECCCCTTCTTCEEECTT--S---CEEEEECCSCCCTTCS-SEEEEECCHHHHHHHHTT
T ss_pred             CCeEE--EcCccCCCCccCcEECCC--C---eEEEEEecccccCCcc-ccccEEEcHHHHHHHHHh
Confidence            34666  124679999999999643  3   6999999987633322 2236665 3355666554

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=97.97  E-value=1.6e-06  Score=52.84  Aligned_cols=41  Identities=29%  Similarity=0.557  Sum_probs=31.8

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHH
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLP   72 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~   72 (82)
                      .|||||||+...      .++||.|++...|....+.+|++|...++
T Consensus       140 ~GDSGgpl~~~~------~~vGi~s~~~~~~~~~~~~~~~pi~~~l~  180 (188)
T 2oua_A          140 PGDSGGSFISGT------QAQGVTSGGSGNCRTGGTTFYQEVNPMLN  180 (188)
T ss_dssp             TTCTTCEEEETT------EEEEEEEEEEEETTTEEEEEEEESHHHHH
T ss_pred             CCCccceEEECC------EEEEEEeccCCCCCCCCceEEEEHHHHHH
Confidence            699999999533      79999999864376545899999876543

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.88  E-value=1e-05  Score=53.22  Aligned_cols=54  Identities=22%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             CCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        21 ~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ....|.|||||||+...  |   .++||.|++...+.... .+....+....+||++.++
T Consensus       172 da~i~~G~SGGPLvn~~--G---~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~  226 (348)
T 3qo6_A          172 DAAINPGNSGGPLLDSS--G---TLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVR  226 (348)
T ss_dssp             CSCCCTTCTTCEEECTT--S---CEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             eCCcCCCCcHHHhhCCC--C---eEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHh
Confidence            34678999999999643  3   69999999765344333 7788888889999988765

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=97.67  E-value=1.4e-05  Score=50.05  Aligned_cols=28  Identities=25%  Similarity=0.154  Sum_probs=22.9

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      .+.|.|||||||+...  |   .|+||+||+..
T Consensus       179 ~~~~~GdSGGPlv~~~--g---~lvGI~s~g~~  206 (246)
T 1qtf_A          179 GYTEVGNSGSGIFNLK--G---ELIGIHSGKGG  206 (246)
T ss_dssp             SCCCGGGTTCEEECTT--C---CEEEEEEEEET
T ss_pred             CCCCCCCchhheECCC--C---EEEEEEecccc
Confidence            4679999999999643  2   69999999865

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=97.50  E-value=0.00011  Score=46.13  Aligned_cols=58  Identities=17%  Similarity=0.133  Sum_probs=39.3

Q ss_pred             CCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCC-CCCcEEEEcCCcHHHHHHHh
Q psy17086         13 ETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARM   78 (82)
Q Consensus        13 ~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~-~~p~vyt~v~~~~~WI~~~~   78 (82)
                      ..+||  .+...|.|||||||+...  |   .++||.+++.. -.. ...+...-+....+++++.+
T Consensus       169 ~~~i~--tda~i~~G~SGGPLv~~~--G---~vvGI~s~~~~-~~~~~g~~faIP~~~~~~~~~~l~  227 (239)
T 1l1j_A          169 VGLIQ--TDAAINPGNSGGPLLNIH--G---EVIGINTAIVN-PQEAVNLGFAIPINTVKKFLDTIL  227 (239)
T ss_dssp             EEEEE--ESSCCCTTTTTSEEECSS--S---EEEEEECCCSC-CCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             CCEEE--ECCCCCCCCccHHhccCC--C---eEEEEEeeeec-CCCcCceEEEEEHHHHHHHHHHHH
Confidence            35677  124689999999999643  3   79999999764 111 12455666677777777655

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=97.36  E-value=8.6e-05  Score=46.25  Aligned_cols=49  Identities=16%  Similarity=0.203  Sum_probs=34.6

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhh
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      ...|.|||||||+..+  |   .++||.||+.. .   ..+....+....+|+++..+
T Consensus       182 a~i~~G~SGGPLv~~~--G---~vVGI~s~~~~-~---g~~~aip~~~i~~~l~~~~~  230 (231)
T 3tjo_A          182 AIINYGNAGGPLVNLD--G---EVIGINTLKVT-A---GISFAIPSDKIKKFLTESHD  230 (231)
T ss_dssp             SCCCTTTTTSEEECTT--S---CEEEEEEEEEE-T---TEEEEEEHHHHHHHHHHHHT
T ss_pred             CCcCCCCchhHeecCC--C---eEEEEEeEEec-C---CeEEEEEHHHHHHHHHHHhh
Confidence            3568899999999543  3   69999999764 2   13445666667777776554

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=97.30  E-value=0.00025  Score=44.20  Aligned_cols=53  Identities=17%  Similarity=0.152  Sum_probs=34.6

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCC----CCCCcEEEEcCCcHHHHHHHhh
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG----IGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~----~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      ...|.|||||||+...  |   .++||.|++...-.    ....+....+....+++++.++
T Consensus       169 ~~i~~G~SGGPlv~~~--G---~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~  225 (237)
T 3lgi_A          169 ASINHGNSGGALVNSL--G---ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  225 (237)
T ss_dssp             SCCCTTCTTCEEECTT--C---CEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             CccCCCCchHHeeCCC--C---eEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHH
Confidence            3468999999999643  3   69999999754211    1113445555666777776654

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.20  E-value=0.00048  Score=44.68  Aligned_cols=60  Identities=20%  Similarity=0.134  Sum_probs=39.4

Q ss_pred             CCCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCC---------CCCCcEEEEcCCcHHHHHHHhh
Q psy17086         12 TETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG---------IGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        12 ~~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~---------~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      ...+||.  +...|.|||||||+...  |   .++||.+++.. -.         ....+...-+....+++++.++
T Consensus       154 ~~~~i~~--d~~~~~G~SGGPlv~~~--G---~vvGI~s~~~~-~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~  222 (324)
T 1y8t_A          154 VLDAIQT--DAAINPGNSGGALVNMN--A---QLVGVNSAIAT-LGADSADAQSGSIGLGFAIPVDQAKRIADELIS  222 (324)
T ss_dssp             CEEEEEE--CSCCCTTCTTEEEECTT--S---EEEEEEEEECC-C-------CCCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             cCCEEEE--cCCCCCCCccCcEECCC--C---eEEEEEeeecc-cCcccccccccccceEEecCHHHHHHHHHHHHH
Confidence            3567881  24679999999999654  3   79999999754 11         1114455666666777766543

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=97.08  E-value=0.00028  Score=43.84  Aligned_cols=29  Identities=38%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             CCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         21 GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        21 ~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      ....|.|||||||+..+  |   .|+||++++..
T Consensus       175 ~~~~~~GdSGGPLv~~~--G---~vvGI~s~~~~  203 (237)
T 3k6y_A          175 RADVEQGDSGGPLIDLN--G---QVLGVVFGAAI  203 (237)
T ss_dssp             ESCCCTTCTTCEEECTT--S---CEEEEEEEECS
T ss_pred             cCccCCCccHHHEECCC--C---EEEEEEEeecc
Confidence            45679999999999643  3   69999999764

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.00  E-value=0.00073  Score=43.80  Aligned_cols=61  Identities=15%  Similarity=0.128  Sum_probs=39.9

Q ss_pred             CCCeeecCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCC----CCCCcEEEEcCCcHHHHHHHhh
Q psy17086         12 TETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG----IGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        12 ~~~~~C~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~----~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      ...++|.  +...|.|+|||||+...  |   .++||.+++...-.    ....+....+....+++++.++
T Consensus       150 ~~~~i~~--d~~~~~G~SGGPl~~~~--G---~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~  214 (318)
T 1te0_A          150 RQNFLQT--DASINHGNSGGALVNSL--G---ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  214 (318)
T ss_dssp             SCCSEEE--SSCCCTTTTTSEEECTT--C---CEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             cCCEEEE--CCCCCCCCCcCceECCC--C---eEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHH
Confidence            3456771  23679999999999643  3   69999998764111    1124556666667777776553

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=96.99  E-value=0.00061  Score=42.95  Aligned_cols=51  Identities=22%  Similarity=0.122  Sum_probs=32.9

Q ss_pred             CCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCC--CCCcEEEEcCCcHHHHHHHhh
Q psy17086         23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI--GSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        23 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~--~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..|.|+|||||+...  |   .++||.++... -..  ...+...-+...++++++.++
T Consensus       181 ~i~~G~SGGPLvn~~--G---~vVGI~s~~~~-~~~~~~g~~faIP~~~~~~~~~~l~~  233 (245)
T 3sti_A          181 SINRGNSGGALLNLN--G---ELIGINTAILA-PGGGSVGIGFAIPSNMARTLAQQLID  233 (245)
T ss_dssp             CCCTTTTTSEEECTT--S---CEEEEEECCC-------CCCEEEEEHHHHHHHHHHHHH
T ss_pred             CcCCCcchhHeecCC--C---eEEEEEEeEEC-CCCCcceEEEEEeHHHHHHHHHHHHH
Confidence            568899999999543  3   69999998764 211  114445556666677766654

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=96.69  E-value=0.0016  Score=42.36  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=26.5

Q ss_pred             CCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecC
Q psy17086         12 TETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT   53 (82)
Q Consensus        12 ~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~   53 (82)
                      ...+|| .   ...|.|+|||||+...  |   .++||.+++.
T Consensus       158 ~~~~i~~d---~~~~~G~SGGPl~~~~--G---~vVGI~s~~~  192 (325)
T 1lcy_A          158 NVEYIQTD---AAIDFGNAGGPLVNLD--G---EVIGVNTMKV  192 (325)
T ss_dssp             CCCCEEES---SCCSTTTTTSEEEETT--S---CEEEEEEEEE
T ss_pred             CCCEEEEc---CCCCCCCccccEECCC--C---EEEEEEeEee
Confidence            456788 4   3579999999999644  3   6999999875

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=96.62  E-value=0.00067  Score=41.49  Aligned_cols=39  Identities=28%  Similarity=0.573  Sum_probs=26.1

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecC-----CCCC---CCCCcEEEEcCC
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGT-----PECG---IGSPGIYTRITA   69 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~-----~~c~---~~~p~vyt~v~~   69 (82)
                      .|||||||+...  +   .++||.|++.     ..|.   ......|..|..
T Consensus       140 ~GDSGGPl~~~~--g---~~vGI~s~~~~~~~~~~c~~~~~~g~~f~~Pi~~  186 (198)
T 2h5c_A          140 RGDSGGSWITSA--G---QAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQP  186 (198)
T ss_dssp             TTCTTCEEECTT--C---BEEEEEEEECCCTTSBSTTSCGGGCCEEEEEHHH
T ss_pred             CCcceeEEEeeC--C---EEEEEEEeecCccCCCccccccCCceEEEEEHHH
Confidence            699999999422  2   7999999985     3352   222556666543

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=96.19  E-value=0.0031  Score=41.07  Aligned_cols=46  Identities=17%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             CCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHH
Q psy17086         23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR   77 (82)
Q Consensus        23 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~   77 (82)
                      ..|.|||||||+...  |   .++||.||+.. .   ..+....+.....|+++.
T Consensus       166 ~i~~G~SGGPlv~~~--G---~vvGI~s~~~~-~---g~~~aip~~~i~~~l~~~  211 (332)
T 3num_A          166 IINYGNAGGPLVNLD--G---EVIGINTLKVT-A---GISFAIPSDKIKKFLTES  211 (332)
T ss_dssp             CCCTTTTTSEEEETT--S---CEEEEEEEEEE-T---TEEEEEEHHHHHHHHHHH
T ss_pred             CcCCCCcHHHhhCCC--C---cEEEEEeeEec-c---cceEEECHHHHHHHHHHH
Confidence            467899999999654  3   68999999754 2   133444445555565543

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=96.18  E-value=0.017  Score=43.15  Aligned_cols=51  Identities=25%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             CcCCCCceeEEEeC-CCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         25 CNGDSGGPLVWKNN-DTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        25 C~gdsGgPl~~~~~-~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      =.||||+||+..+. .+.| +|+|+.+.+.. -... -..|.-+.  .+|+++++++
T Consensus       203 ~~GDSGSPlF~yD~~~kKW-vLvGv~s~g~~-~g~~-~~~~~~~~--~~f~~~~~~~  254 (1048)
T 1wxr_A          203 EAGDSGSPLFAFDTVQNKW-VLVGVLTAGNG-AGGR-GNNWAVIP--LDFIGQKFNE  254 (1048)
T ss_dssp             CTTCTTCEEEEEETTTTEE-EEEEEEEEESS-TTCS-CEEEEECC--HHHHHHHHHT
T ss_pred             CCCCCCCeeeEEEcCCCeE-EEEEEeccccc-CCcc-cceEEEeC--HHHhhhhhhc
Confidence            45999999998875 4677 99999984432 1111 13344443  3787776653

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=95.88  E-value=0.0084  Score=39.43  Aligned_cols=52  Identities=21%  Similarity=0.137  Sum_probs=30.6

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      ...|.|+|||||+...  |   .++||.++......... .+...-+....+++++.+
T Consensus       180 a~i~~GnSGGPLvn~~--G---~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  232 (345)
T 3stj_A          180 ASINRGNSGGALLNLN--G---ELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLI  232 (345)
T ss_dssp             SCCCTTCTTCEEECTT--S---CEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHH
T ss_pred             cccCCCcCccceeCCC--C---EEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHH
Confidence            3568999999999654  3   68999987544222111 333333334445555443

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=95.40  E-value=0.044  Score=40.74  Aligned_cols=51  Identities=16%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             CcCCCCceeEEEeCC-CceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         25 CNGDSGGPLVWKNND-TRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        25 C~gdsGgPl~~~~~~-~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      =.||||+||+..+.. +.| +|+|+.+.+.. .... -.-|+-+.  .+|+.+++.+
T Consensus       214 ~~GDSGSPLFayD~~~~KW-vl~Gv~~~~~~-~~g~-~n~~~i~~--~~f~~~~~~~  265 (1011)
T 3syj_A          214 SKGDSGSPMFIYDAEKQKW-LINGILREGNP-FEGK-ENGFQLVR--KSYFDEIFER  265 (1011)
T ss_dssp             CTTCTTCEEEEEETTTTEE-EEEEEECC----------EEEEECC--HHHHHHHHHH
T ss_pred             CCCCCCCcceeeEcCCCeE-EEEEEeecccc-ccCc-ccceEEec--hHHhhhhhhc
Confidence            469999999988764 677 99999987543 2211 12244222  4788877754

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=94.41  E-value=0.049  Score=36.77  Aligned_cols=28  Identities=29%  Similarity=0.350  Sum_probs=21.8

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      ...+.|+|||||+...  |   .++||.++...
T Consensus       180 a~i~~GnSGGPl~n~~--G---~vvGI~~~~~~  207 (436)
T 4a8c_A          180 ASINRGNAGGALLNLN--G---ELIGINTAILA  207 (436)
T ss_pred             CccCCCCCcCcccCCC--C---EEEEEEeeecc
Confidence            3567899999999654  3   79999987654

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=94.40  E-value=0.035  Score=37.74  Aligned_cols=51  Identities=24%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             CCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086         23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus        23 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      ..+.|+|||||+...  |   .++||.++......... .+...-+....+++++.+
T Consensus       199 ~i~~GnSGGPl~n~~--G---~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  250 (451)
T 3pv2_A          199 AINPGNSGGALVNAK--G---ELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQII  250 (451)
T ss_dssp             CCCGGGTTSEEEETT--C---CEEEEEECCC------CCCEEEEEHHHHHHHHHHHH
T ss_pred             ccCCCCCcCcccCCC--C---eEEEEEeEeecCCCCccceeeeehhHHHHHHHHHHH
Confidence            457899999999654  3   69999987654221111 334444445555555544

>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}

Probab=94.25  E-value=0.058  Score=40.05  Aligned_cols=53  Identities=15%  Similarity=0.168  Sum_probs=32.5

Q ss_pred             CCcCCCCceeEEEeCC-CceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         24 SCNGDSGGPLVWKNND-TRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        24 ~C~gdsGgPl~~~~~~-~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .=.||||+||+..+.. ++| +|+|+.++..+ -....-..|+-+.  .+++++++++
T Consensus       258 ~~~GDSGSPlF~yD~~~~kW-vl~Gvl~~~~g-~~~~~~~~w~i~~--~~f~~~i~~~  311 (989)
T 3h09_A          258 AVLGDSGSPLFVYDREKGKW-LFLGSYDFWAG-YNKKSWQEWNIYK--PEFAKTVLDK  311 (989)
T ss_dssp             CCTTCTTCEEEEEETTTTEE-EEEEEEEEECH-HHHCCEEEEEECC--HHHHHHHHHH
T ss_pred             CCcCCCCCccceeecccceE-EEEEEeecccc-cCCcccceeEecc--HHHHHhHhhc
Confidence            3469999999988764 677 99999986322 1111122344442  4666666643

>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}

Probab=93.47  E-value=0.091  Score=39.01  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             CcCCCCceeEEEeCC-CceEEEEEEEee
Q psy17086         25 CNGDSGGPLVWKNND-TRKHYLIGLVSY   51 (82)
Q Consensus        25 C~gdsGgPl~~~~~~-~~~~~l~Gi~s~   51 (82)
                      =.||||+||+..+.. +.| +|+|+.+-
T Consensus       204 ~~GDSGSPlFaYD~~~~KW-vl~GVl~~  230 (968)
T 3sze_A          204 SQGDAGSALFVYDNQKKKW-VVAGTVWG  230 (968)
T ss_dssp             CTTCTTCEEEEEETTTTEE-EEEEEEEE
T ss_pred             CcCCCCCcceeEEcCCCeE-EEEEEEec
Confidence            469999999988764 677 99999754

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=93.02  E-value=0.056  Score=33.16  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=18.1

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecC
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGT   53 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~   53 (82)
                      .||||||++...      .++||.+...
T Consensus       111 PGDSGsPVl~~~------~vIGV~T~s~  132 (198)
T 1mbm_A          111 SGDSGSAVVQGD------AVVGVHTGSN  132 (198)
T ss_dssp             GGGTTCEEEETT------EEEEEEEEEE
T ss_pred             CCCCCCccccCC------eEEEEEeccC
Confidence            589999999665      6999998843

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=90.05  E-value=0.16  Score=31.53  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=16.9

Q ss_pred             CCCCceeEEEeCCCceEEEEEEEeecC
Q psy17086         27 GDSGGPLVWKNNDTRKHYLIGLVSYGT   53 (82)
Q Consensus        27 gdsGgPl~~~~~~~~~~~l~Gi~s~g~   53 (82)
                      ||||+||+..+.     .++||.+-..
T Consensus       125 GdSGsPVvn~dG-----~VIGVHt~s~  146 (213)
T 3fan_A          125 GDSGSPVITEAG-----ELVGVHTGSN  146 (213)
T ss_dssp             CSTTCEEEETTS-----CEEEEEEC--
T ss_pred             CCCCCccCCCCC-----cEEEEEeccC
Confidence            999999997763     6899987543

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=86.98  E-value=0.29  Score=28.86  Aligned_cols=24  Identities=21%  Similarity=0.291  Sum_probs=18.1

Q ss_pred             CCCcCCCCceeEEEeCCCceEEEEEEEee
Q psy17086         23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSY   51 (82)
Q Consensus        23 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~   51 (82)
                      ..-.|.|||||+-..  |   .++||.+.
T Consensus       121 ~i~pGnSGGPl~n~~--G---~VVGI~~~  144 (163)
T 2w5e_A          121 RTQDGMSGAPVCDKY--C---RVLAVHQT  144 (163)
T ss_dssp             SCSSCCTTCEEECTT--S---CEEEEEEE
T ss_pred             EeCCCCchhhEEcCC--C---EEEEEEcc
Confidence            356799999999643  3   68998764

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=85.86  E-value=1  Score=30.49  Aligned_cols=27  Identities=33%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecC
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT   53 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~   53 (82)
                      .....|+|||||+...  |   .++||.+...
T Consensus       203 a~i~~GnSGGpl~n~~--G---~vvGI~~~~~  229 (448)
T 1ky9_A          203 AAINRGNAGGALVNLN--G---ELIGINTAIL  229 (448)
T ss_dssp             CCCTTSCCCSEEECTT--S---CEEEEEECSS
T ss_pred             CCCCCCCCCCeeECCC--C---EEEEEEEEee
Confidence            3457899999999654  3   6999998754

>2hrv_A 2A cysteine proteinase; hydrolase (cysteine proteinase); 1.95A {Human rhinovirus 2} SCOP: b.47.1.4

Probab=82.96  E-value=1.6  Score=25.40  Aligned_cols=35  Identities=29%  Similarity=0.533  Sum_probs=27.1

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcH
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL   71 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~   71 (82)
                      .||=||.|.|+.      -++||++.|..     +-..|++|..+.
T Consensus       103 pGDCGG~L~C~H------GviGivTaGG~-----g~VaF~D~R~l~  137 (142)
T 2hrv_A          103 PGDCGGKLLCKH------GVIGIVTAGGD-----NHVAFIDLRHFH  137 (142)
T ss_dssp             TTCTTCEEEETT------EEEEEEEEECS-----SEEEEEEGGGGS
T ss_pred             CCCCCceeeeCC------CceEEEecCCC-----CEEEEEEchhhh
Confidence            368899999998      68999998764     245588887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	8e-17
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	2e-16
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	1e-15
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	1e-15
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	1e-15
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	2e-15
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	3e-15
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	2e-14
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	2e-14
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	4e-14
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	8e-14
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	1e-13
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	1e-13
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	2e-13
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	2e-13
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	2e-13
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	3e-13
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	3e-13
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	3e-13
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	6e-13
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	6e-13
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	7e-13
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	9e-13
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	1e-12
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	1e-12
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	1e-12
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	1e-12
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	2e-12
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	4e-12
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	6e-12
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	6e-12
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	7e-12
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	7e-12
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	7e-12
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	1e-11
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	2e-11
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	3e-11
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	3e-11
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	4e-11
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	5e-11
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	5e-11
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	7e-11
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	1e-10
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	2e-10
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	6e-10
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	1e-09
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	2e-09
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	3e-09
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	4e-09
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	4e-09
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	6e-09
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	6e-09
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	9e-09
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	1e-08
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	2e-08
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	2e-08
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	2e-08
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	2e-07
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	1e-05
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	0.002

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           GKD+C GDSGGPL  K+N+    +L+G+ S+G        PG+YT +  Y+ WI+ + 
Sbjct: 180 GKDACKGDSGGPLSCKHNEV--WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 3e-15
 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
             +DSC GDSGGPLV K N T      G+VS+G        PGIYTR+T YL WI
Sbjct: 185 TRRDSCQGDSGGPLVCKVNGT--WLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 2e-14
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPL+ + N+     L G+ S+G        PG+Y R+  +  WI
Sbjct: 179 GVDSCQGDSGGPLMCQENNR--WLLAGVTSFGYQCALPNRPGVYARVPRFTEWI 230

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (152), Expect = 2e-14
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 2   NQNHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGS 60
            + + G I+          G D+C GDSGGPLV          L G+ S+G+  CG    
Sbjct: 153 ERAYPGKITEGMVCAGSSNGADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEK 206

Query: 61  PGIYTRITAYLPWI 74
           PG+YT+I  Y  WI
Sbjct: 207 PGVYTKICRYTTWI 220

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 4e-14
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTR--KHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           G D+C GDSGGP V +++ +R  +  L G+VS+GT       PG+YT+++ +  WI   +
Sbjct: 183 GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 242

Query: 79  A 79
            
Sbjct: 243 K 243

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 8e-14
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           G DSC GDSGGPLV    D   + L G+ S+G        PG+Y R++ ++ WI   M 
Sbjct: 189 GTDSCQGDSGGPLVCFEKDK--YILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYG----------TPECGIGSPGIYTRITA 69
              ++C GDSGGPL+           +G++S+G            +    +   +  +  
Sbjct: 213 ADPNTCRGDSGGPLIVHKRSR--FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQ 270

Query: 70  YLPWIIARM 78
            LPW+  ++
Sbjct: 271 VLPWLKEKL 279

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.8 bits (146), Expect = 1e-13
 Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
           GKD+C  DSGGPL+          L G  SYG   CG  G P IYT +  +  WI   M 
Sbjct: 181 GKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           KDSC GDSGGPL   +  +   YL G+VS+G      G PG+YT ++ ++ WI A  
Sbjct: 182 KDSCQGDSGGPLAASDTGS--TYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA 236

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 19  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIAR 77
             GKD+C GDSGGPL+          L G+ S G   C    +P IY ++  +  WI   
Sbjct: 177 EGGKDTCAGDSGGPLICDG------VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKV 230

Query: 78  MA 79
           M 
Sbjct: 231 MK 232

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 59.7 bits (143), Expect = 3e-13
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           GKDSC GDSGGP+V  +N      LIG VS+G         G+Y  + A   +I
Sbjct: 172 GKDSCQGDSGGPIVDSSN-----TLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 3e-13
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           G DSC GDSGGPL     D R  +  G+VS+G        PG+YTR+  +  WI
Sbjct: 183 GVDSCQGDSGGPLSSVEADGR-IFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-13
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           G+DSC GDSGGP V +   T   +L G++S+G      G  GIYT+++ Y+ WI  + 
Sbjct: 177 GRDSCQGDSGGPHVTEVEGT--SFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (142), Expect = 6e-13
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           G  +C  DSGGPL+          L G+ S+G   CG    P +YT++  +  WI   MA
Sbjct: 172 GSYTCEHDSGGPLICDG------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 225

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 6e-13
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 20  PGKDSCNGDSGGPLVWKN-NDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
            G DSC GDSGG    ++ ND  K Y  GLVS+G      G+ G+YTR+  Y+ WI+  M
Sbjct: 199 KGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWG---PQCGTYGLYTRVKNYVDWIMKTM 255

Query: 79  A 79
            
Sbjct: 256 Q 256

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 7e-13
 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP+V   + T   +L+GLVS+G     + + G+YT+++ YL WI   +
Sbjct: 184 QDACEGDSGGPMVASFHGT--WFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 9e-13
 Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWI 74
           KDSC GDSGG LV+ +++T + ++ G+VS+G+  CG  G  G+YT++  Y+PWI
Sbjct: 182 KDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 58.4 bits (140), Expect = 1e-12
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G      G+PG+Y ++  +  W+ + MA
Sbjct: 168 GKDSCQGDSGGPVVCNG------ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.6 bits (140), Expect = 1e-12
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECG-IGSPGIYTRITAYLPWIIARM 78
             +CNGDSGGPL  + +      + G+VS+G+   C     P ++TR++AY+ WI  ++
Sbjct: 193 ISACNGDSGGPLNCQADGQ--WDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (139), Expect = 1e-12
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKD+C GDSGGP+V          L G+VS+G       +PG+YT++  Y+ WI   +A
Sbjct: 169 GKDACQGDSGGPVVCNG------ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 7/57 (12%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           + +C+GDSGGPLV           IG+VS+G+P C +G P +YTR+++++ WI A +
Sbjct: 171 EGACHGDSGGPLVANG------AQIGIVSFGSP-CALGEPDVYTRVSSFVSWINANL 220

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-12
 Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 7/56 (12%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWI 74
            GKDSC GDSGGPLV  +      +L GLVS+G   CG    PG+YT +  Y  WI
Sbjct: 167 YGKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 56.7 bits (135), Expect = 4e-12
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           G D+C GDSGGP+  K+N       +G+VS+G      G PG+YT ++ +   I +  
Sbjct: 164 GVDTCQGDSGGPMFRKDNADE-WIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAA 220

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 6e-12
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
            KDSC GDSGGP       T   YL G+VS+G     +G  G+YTR++ Y+ W+   M 
Sbjct: 184 SKDSCKGDSGGPHATHYRGT--WYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 6e-12
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 19  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIAR 77
              +DSC GDSGGPLV          L G+V+ G+  CG    PGIYTR+ +Y  WI + 
Sbjct: 173 SNRRDSCKGDSGGPLVCG------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSV 226

Query: 78  MA 79
           +A
Sbjct: 227 LA 228

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 56.2 bits (134), Expect = 7e-12
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 3   QNHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSP 61
               G ++          GK +CNGDSGGPL +           G+ S+G    C  G P
Sbjct: 152 DAVYGIVTDGNICIDSTGGKGTCNGDSGGPLNYNG------LTYGITSFGAAAGCEAGYP 205

Query: 62  GIYTRITAYLPWI 74
             +TR+T +L WI
Sbjct: 206 DAFTRVTYFLDWI 218

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 7e-12
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
              C GD GGPLV + +  R   ++G++  G        PGI+ R+  Y  WI
Sbjct: 172 SGPCEGDYGGPLVCEQHKMR--MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 7e-12
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +D+C GDSGGP V +  DT  +++ G+VS+G      G  GIYT++TA+L WI   M
Sbjct: 178 EDACQGDSGGPHVTRFKDT--YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           GKDSC GDSGGP+V          L G+VS+G        PG+YT++  Y+ WI   +A
Sbjct: 173 GKDSCQGDSGGPVVCNG------QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 55.5 bits (132), Expect = 2e-11
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGSPGIYTRITAYLPWIIARMA 79
              C GDSGG L+            G+ S+G  EC       ++T++  +  WI   + 
Sbjct: 182 GSICLGDSGGALICDG------VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 3e-11
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRIT-AYLPWIIARM 78
            KDSC GD+GGPL+ K           +VS G        PGIYT +T  Y  WI + +
Sbjct: 182 QKDSCKGDAGGPLICKG------VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 54.4 bits (129), Expect = 3e-11
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIARMA 79
           KD+C GDSGGPL+            G+VSYG   CG    PGIYT +  Y  WI   +A
Sbjct: 173 KDTCGGDSGGPLICNG------QFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIA 225

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 54.3 bits (129), Expect = 4e-11
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 8/53 (15%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
           + +  GDSGGPL+            G+VSYG P+     P I+TR++ Y+PWI
Sbjct: 175 RAAFMGDSGGPLLCAG------VAHGIVSYGHPDAK--PPAIFTRVSTYVPWI 219

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.0 bits (128), Expect = 5e-11
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 19  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
              + S  GDSGGPLV K          G+VSYG  +    +P  +T+++ +L WI
Sbjct: 174 KIKRASFRGDSGGPLVCKK------VAAGIVSYGQNDGS--TPRAFTKVSTFLSWI 221

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 54.0 bits (128), Expect = 5e-11
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARMA 79
             SCNGDSGGPL  +  + +   + G+VS+G+   C     P ++TR++ Y+ WI + +A
Sbjct: 181 ISSCNGDSGGPLNCQGANGQ-WQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA 239

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 53.7 bits (127), Expect = 7e-11
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLI-GLVSYGTPECGIGSPGIYTRITAYLPWI 74
               +CNGDSGGPL   +  TR   +   +VS G   C    P +YTR++AYL WI
Sbjct: 182 GNTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 1e-10
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
             DSC GDSGGP+V          L G+VS+G+       PG+YT++  Y+ WI   +A
Sbjct: 169 KGDSCQGDSGGPVVCSG------KLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIA 221

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 2e-10
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 19  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 77
                 C GDSGGPL+          + G+ S+    C     P  +TR+  Y+ WI + 
Sbjct: 166 RRKAGICFGDSGGPLICDG------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219

Query: 78  M 78
           +
Sbjct: 220 L 220

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 6e-10
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 24  SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
           +C GDSGG    ++ +T +    G+VS+G   C     G YT++  Y+ WI   M
Sbjct: 186 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CS-RGYGFYTKVLNYVDWIKKEM 238

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 1e-09
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
              CNGD G PLV +          G+ S+    CG G P  +TR+  +  WI
Sbjct: 168 GGICNGDGGTPLVCEG------LAHGVASFSLGPCGRG-PDFFTRVALFRDWI 213

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 49.8 bits (117), Expect = 2e-09
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 23  DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWI 74
             CNGDSGGPL  + N +  +Y+ G+ S+ +   C     P ++TR++AY+ W+
Sbjct: 181 SGCNGDSGGPLNCQVNGS--YYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWM 232

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 3e-09
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 1   MNQNHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CG-I 58
              +  G              +  CNGDSGGPL     D     + G+ S+ +   C  I
Sbjct: 151 SQWDWWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGS-WQVHGVTSFVSAFGCNTI 209

Query: 59  GSPGIYTRITAYLPWIIARMA 79
             P ++TR++A++ WI   +A
Sbjct: 210 KKPTVFTRVSAFIDWIDETIA 230

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 4e-09
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 8/50 (16%)

Query: 25  CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
             GDSGGPL+            G+VSYG  +     P ++TRI+ Y PWI
Sbjct: 176 FKGDSGGPLLCAG------VAQGIVSYGRSDAK--PPAVFTRISHYRPWI 217

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 49.0 bits (115), Expect = 4e-09
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRITAYLPWIIARM 78
            +  C GDSGGPL    N   ++ + G+ S+ +   C +   P ++TR++AY+ WI   +
Sbjct: 180 VRSGCQGDSGGPLHCLVNG--QYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

Query: 79  A 79
           A
Sbjct: 238 A 238

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 6e-09
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 25  CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARM 78
            +GDSGGPLV            G+VSYG  +    +P +YTRI+++L WI + M
Sbjct: 178 FSGDSGGPLVCNG------VAQGIVSYGRNDGT--TPDVYTRISSFLSWIHSTM 223

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 6e-09
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 22  KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA 79
           K +  GDSGGPL+  N         G+VSYG        P ++TR++++LPWI   M 
Sbjct: 174 KAAFKGDSGGPLLCNN------VAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMR 223

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 9e-09
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 9/61 (14%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI-GSPGIYTRIT-AYLPWIIAR 77
           G+DSCNGDSG PL+ +          G+ S+G    CG    PG+Y  ++  +L WII  
Sbjct: 176 GRDSCNGDSGSPLLCEG------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229

Query: 78  M 78
           +
Sbjct: 230 I 230

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-08
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-SPGIYTRITAYLPWI 74
               C GDSG PLV          + G+ S+    C  G  P  +  +  ++ WI
Sbjct: 165 QAGVCFGDSGSPLVCNG------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-08
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 20  PGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI 74
             K S  GDSGGPLV            G+VSYG        P   T++++++ WI
Sbjct: 174 IKKTSFKGDSGGPLVCNK------VAQGIVSYGRNNGM--PPRACTKVSSFVHWI 220

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 46.1 bits (108), Expect = 2e-08
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 21  GKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYL 71
              S  GDSGG     +        +G+ S  +   G     I+  +T  L
Sbjct: 135 TACSAGGDSGGAHFAGS------VALGIHSGSSGCSGTAGSAIHQPVTEAL 179

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 46.7 bits (109), Expect = 2e-08
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 19  FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGT-PECGIGSPGIYTRITAYLPWI 74
             GK  C GDSGGP V  +     + LIG+VS+ +   C  G P  ++R+T+Y+ WI
Sbjct: 170 SDGKSPCFGDSGGPFVLSDK----NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 44.0 bits (102), Expect = 2e-07
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 25  CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GSPGIYTRITAYLPWIIAR 77
            +G+SG  ++ +N       ++G+ + G     I G P        ++ +  A+
Sbjct: 167 FSGNSGSAMLDQN-----QQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ 215

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 38.8 bits (89), Expect = 1e-05
 Identities = 11/73 (15%), Positives = 15/73 (20%), Gaps = 1/73 (1%)

Query: 2   NQNHKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP 61
                G    T       P        S G  ++         L G  S  +   G    
Sbjct: 166 FVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPEKRVLGQLHGGPSSCSA-TGTNRS 224

Query: 62  GIYTRITAYLPWI 74
             Y R+       
Sbjct: 225 DQYGRVFTSWTGG 237

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 5   HKGDISVTETKFLVFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIY 64
            KG I+  + + + +    +  G+SG P+        K+ +IG+   G P    G+  I 
Sbjct: 146 SKGKITYLKGEAMQYDL-STTGGNSGSPVF-----NEKNEVIGIHWGGVPNEFNGAVFIN 199

Query: 65  TRITAYL 71
             +  +L
Sbjct: 200 ENVRNFL 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.85
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	99.84
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.84
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.84
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	99.83
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.83
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	99.81
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.81
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	99.81
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	99.81
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	99.81
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.8
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	99.79
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	99.79
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	99.78
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.78
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	99.78
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.78
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	99.78
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	99.78
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.78
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.78
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.77
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	99.77
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	99.77
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	99.77
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	99.77
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	99.77
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.77
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	99.76
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	99.76
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	99.76
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	99.76
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	99.75
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.74
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	99.73
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	99.72
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	99.72
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	99.72
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	99.69
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.68
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	99.68
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.68
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	99.67
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	99.64
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	99.58
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.43
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	98.98
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	98.97
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	97.91
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	97.74
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	97.05
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	97.0
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	96.44
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	94.76
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	94.56
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	94.51
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	92.55
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	92.01
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	92.0
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	91.7
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	91.64

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.85  E-value=1.3e-21  Score=119.70  Aligned_cols=80  Identities=29%  Similarity=0.495  Sum_probs=66.2

Q ss_pred             CCCCCCCCCcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCC-CCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~-c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++.......+...++| . ....+.|.||+||||++...+++| +|+||+|++... |.... |++||||+.|++||++
T Consensus       158 C~~~~~~~~~~~~~~~~~~~~~~~~~C~gdsGgPl~~~~~~~~~-~L~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~~  236 (241)
T d1brup_         158 CSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQW-QVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINS  236 (241)
T ss_dssp             HTSTTTTGGGCCTTEEEECCSSSSBCCTTCTTCEEEEECTTSCE-EEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHH
T ss_pred             hCccccccccccccceeecCCCCccccCCCcccceEEEcCCCCE-EEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHH
Confidence            45555555667788888 5 777889999999999998777888 999999998752 55555 9999999999999999


Q ss_pred             Hhhcc
Q psy17086         77 RMAYE   81 (82)
Q Consensus        77 ~~~~~   81 (82)
                      +|++|
T Consensus       237 ~i~~~  241 (241)
T d1brup_         237 VIANN  241 (241)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            99875

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=5.1e-21  Score=117.10  Aligned_cols=79  Identities=30%  Similarity=0.484  Sum_probs=66.2

Q ss_pred             CCCCCCCCcCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCC-CCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086          2 NQNHKGDISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus         2 ~~~~~~~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~-c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      .+.......+++.++| .......|.+|+||||++...+++| +|+||+|++... |+... |++||||+.|++||+++|
T Consensus       151 ~~~~~~~~~~~~~~~c~~~~~~~~~~gdsGgpl~~~~~~~~~-~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i  229 (232)
T d1fona_         151 SQWDWWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAADGSW-QVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI  229 (232)
T ss_dssp             TSTTTTGGGCCTTEEEECCSSSCSTTSCTTCEEEEECSSSCE-EEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHH
T ss_pred             hhhhccCceeeeceeeeccccccccccCCCCceEEEccCCCE-EEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHH
Confidence            3444445667889999 7777889999999999998877888 999999997643 77666 999999999999999999


Q ss_pred             hcc
Q psy17086         79 AYE   81 (82)
Q Consensus        79 ~~~   81 (82)
                      ++|
T Consensus       230 ~~~  232 (232)
T d1fona_         230 ASN  232 (232)
T ss_dssp             HHC
T ss_pred             HcC
Confidence            875

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.9e-21  Score=117.33  Aligned_cols=75  Identities=35%  Similarity=0.630  Sum_probs=63.9

Q ss_pred             CCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          4 NHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         4 ~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      .........+.++| +  ....+.|.||+|+||++... ++| +|+||+|++.. |.... |.+||||++|++||+++|+
T Consensus       169 ~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~-~~~-~l~Gi~S~~~~-c~~~~~p~v~t~v~~~~~WI~~~i~  245 (247)
T d1rjxb_         169 YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEK-DKY-ILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEGVMR  245 (247)
T ss_dssp             TTTTTTCSCTTEEEESCSSSCCCBCCSCTTCEEEEECS-SSE-EEEEEECTTSC-CBBTTBCEEEEEGGGGHHHHHHHHH
T ss_pred             hhccCcccccceeEEeccCCCcccccCCccceEEEeeC-CEE-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            33445567888999 5  66788999999999998874 788 99999999987 87666 9999999999999999998


Q ss_pred             cc
Q psy17086         80 YE   81 (82)
Q Consensus        80 ~~   81 (82)
                      ++
T Consensus       246 ~~  247 (247)
T d1rjxb_         246 NN  247 (247)
T ss_dssp             HC
T ss_pred             cC
Confidence            75

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=8.7e-21  Score=117.19  Aligned_cols=77  Identities=32%  Similarity=0.564  Sum_probs=64.2

Q ss_pred             CCCCCCCCCcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC-CCCCCC-CcEEEEcCCcHHHHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~-~c~~~~-p~vyt~v~~~~~WI~~   76 (82)
                      |++........++.++| + ....+.|.+|+||||++... ++| +|+||+||+.. .|.... |.+||||+.|++||++
T Consensus       170 C~~~~~~~~~~~~~~~c~~~~~~~~~c~gd~G~Pl~~~~~-~~~-~L~Gi~S~~~~~~c~~~~~p~vyt~v~~y~~WI~~  247 (251)
T d1pytd_         170 CSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQAD-GQW-DVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQ  247 (251)
T ss_dssp             HTSTTTTTTTCCTTEEEECCSCSSCCCCSCTTCEEEEESS-SSE-EEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHH
T ss_pred             HhhhhcccccccCceEEeccCCCCccccCCCCCceEEeeC-CEE-EEEEEEEECCCCCCCCCCCCeEEEEHHHhHHHHHH
Confidence            45555556678889999 6 66788999999999999774 788 99999999764 276656 9999999999999999


Q ss_pred             Hhh
Q psy17086         77 RMA   79 (82)
Q Consensus        77 ~~~   79 (82)
                      +|+
T Consensus       248 ~i~  250 (251)
T d1pytd_         248 KLQ  250 (251)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            986

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=117.18  Aligned_cols=79  Identities=33%  Similarity=0.660  Sum_probs=65.7

Q ss_pred             CCCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeC---CCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHH
Q psy17086          1 MNQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNN---DTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPW   73 (82)
Q Consensus         1 C~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~---~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~W   73 (82)
                      |++.+.....+.+.++| .  ....+.|.||+||||++...   .++| +|+||+||+.. |.... |.+||||+.|++|
T Consensus       160 C~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~-~l~Gi~S~g~~-c~~~~~p~vft~V~~y~~W  237 (255)
T d1z8ga1         160 CNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRW-RLCGIVSWGTG-CALAQKPGVYTKVSDFREW  237 (255)
T ss_dssp             HTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEE-EEEEEEEEBSS-SSCTTCCEEEEEGGGGHHH
T ss_pred             hhhhhccCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcE-EEEEEEEECCC-CCCCCCCEEEEEHHHhHHH
Confidence            44555556677888888 4  66778999999999998864   3577 99999999987 88776 9999999999999


Q ss_pred             HHHHhhcc
Q psy17086         74 IIARMAYE   81 (82)
Q Consensus        74 I~~~~~~~   81 (82)
                      |+++|+.+
T Consensus       238 I~~~i~~~  245 (255)
T d1z8ga1         238 IFQAIKTH  245 (255)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999764

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=8.3e-21  Score=115.93  Aligned_cols=74  Identities=28%  Similarity=0.502  Sum_probs=62.2

Q ss_pred             CCCCcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCC-CCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          6 KGDISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         6 ~~~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~-c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ......++.++| . ....+.|.||+|+||++... +++ +|+||+||+... |.... |+|||||+.|++||+++|++|
T Consensus       163 ~~~~~~~~~~~c~~~~~~~~~c~gDsG~pl~~~~~-~~~-~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~n  240 (240)
T d1gvkb_         163 YWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVN-GQY-AVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN  240 (240)
T ss_dssp             TTGGGCCTTEEEECCSSSCBCCTTCTTCEEEEEET-TEE-EEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             ccCCccCCceEEecCCCCCccccCccccceEEEEC-CEE-EEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHHHhcC
Confidence            334557889999 5 77788999999999999874 677 999999998652 55555 999999999999999999875

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=119.64  Aligned_cols=71  Identities=27%  Similarity=0.577  Sum_probs=56.6

Q ss_pred             CcCCCCeee-c----CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCC-CCC--------CC-CcEEEEcCCcHHH
Q psy17086          9 ISVTETKFL-V----FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGI--------GS-PGIYTRITAYLPW   73 (82)
Q Consensus         9 ~~i~~~~~C-~----~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~-c~~--------~~-p~vyt~v~~~~~W   73 (82)
                      ..++++||| +    ..+.++|.|||||||++..+ ++| +|+||+|||... |..        .. |.|||||+.|++|
T Consensus       197 ~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~~-~~~-~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~W  274 (287)
T d1rrka1         197 EVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR-SRF-IQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPW  274 (287)
T ss_dssp             GTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEET-TEE-EEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHH
T ss_pred             ccccCCceEecccCCCcCCCCCCCCccCCeEEecC-CeE-EEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHH
Confidence            457899999 5    34567899999999999874 778 999999997532 321        12 7899999999999


Q ss_pred             HHHHhhcc
Q psy17086         74 IIARMAYE   81 (82)
Q Consensus        74 I~~~~~~~   81 (82)
                      |+++|+++
T Consensus       275 I~~~i~~~  282 (287)
T d1rrka1         275 LKEKLQDE  282 (287)
T ss_dssp             HHHHTTTS
T ss_pred             HHHHhcCC
Confidence            99999864

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.2e-20  Score=113.45  Aligned_cols=76  Identities=32%  Similarity=0.722  Sum_probs=60.4

Q ss_pred             CCCCCCCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHH
Q psy17086          2 NQNHKGDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   77 (82)
Q Consensus         2 ~~~~~~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~   77 (82)
                      ...+.....++++++| .  ....+.|.||+|+||++... +.| +|+||+|++.. |.... |.+||||+.|++||+++
T Consensus       149 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~-~~~-~l~Gi~s~g~~-c~~~~~p~vyt~i~~~~~WI~~~  225 (234)
T d1si5h_         149 SQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQH-KMR-MVLGVIVPGRG-CAIPNRPGIFVRVAYYAKWIHKI  225 (234)
T ss_dssp             CC-------CCTTEEEEECSSSCCBCCTTCTTCEEEEECS-SSE-EEEEEECSCSC-SSCTTCCEEEEEGGGGHHHHHHH
T ss_pred             hhhhccccccCCccEEEccCCcCCCCCcCccccceEEecC-CeE-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHH
Confidence            3344445567899999 5  56788999999999998764 677 99999999987 88766 99999999999999999


Q ss_pred             hhc
Q psy17086         78 MAY   80 (82)
Q Consensus        78 ~~~   80 (82)
                      |+.
T Consensus       226 i~~  228 (234)
T d1si5h_         226 ILT  228 (234)
T ss_dssp             HSS
T ss_pred             hhc
Confidence            965

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.4e-20  Score=112.04  Aligned_cols=70  Identities=36%  Similarity=0.733  Sum_probs=60.5

Q ss_pred             CCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          8 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         8 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ...+.+.++| +  ....+.|.||+|+||++.. +++| +|+||+|++.. |.... |++||||+.|++||+++|++
T Consensus       164 ~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~-~~~~-~l~Gi~s~g~~-~~~~~~p~vft~v~~~~~WI~~~~~~  237 (237)
T d1xx9a_         164 GHKITHKMICAGYREGGKDACKGDSGGPLSCKH-NEVW-HLVGITSWGEG-CAQRERPGVYTNVVEYVDWILEKTQA  237 (237)
T ss_dssp             TSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE-TTEE-EEEEEEEEESS-SSCTTCCEEEECGGGGHHHHHHHHCC
T ss_pred             CCCCCCceEEEecCCCCcccccCCccceeEEec-CCEE-EEEEEEEeCCC-CCCCCCCEEEEEhHHhHhHHHHHHCC
Confidence            3456789999 6  5667899999999999987 4788 99999999987 77666 99999999999999999864

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.8e-20  Score=112.31  Aligned_cols=69  Identities=38%  Similarity=0.703  Sum_probs=60.8

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..+.++++| +  ....+.|.+|+||||++...+++| +|+||+|++.. |.... |.+||||++|++||+++++
T Consensus       168 ~~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~-~L~Gi~s~~~~-c~~~~~p~vft~V~~y~~WI~~~~g  240 (241)
T d1eaxa_         168 QQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI-FQAGVVSWGDG-CAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             TTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCE-EEEEEEEECSS-SSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             ccccCccceeccCCCCcccccCcccceeEEEcCCCeE-EEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            456788999 5  567889999999999998878898 99999999988 87655 9999999999999999874

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.80  E-value=4.1e-20  Score=112.93  Aligned_cols=67  Identities=36%  Similarity=0.663  Sum_probs=57.6

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ....+.++| +  ....+.|.||+||||++..      +|+||+|++...|.... |.+||||++|++||+++++++
T Consensus       164 ~~~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~~------~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~WI~~~i~~~  234 (235)
T d1tona_         164 DNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG------VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKEN  234 (235)
T ss_dssp             TTGGGGEEEEECTTCSCBCCTTCTTCEEEETT------EEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             CCCCCCceEeCcCCCCccccCCCcCCeEEEcC------EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHHHC
Confidence            346788899 5  6677899999999999853      99999999986686655 999999999999999999875

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.2e-19  Score=109.04  Aligned_cols=72  Identities=40%  Similarity=0.762  Sum_probs=60.5

Q ss_pred             CCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCC-CceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          8 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNND-TRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         8 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~-~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ...+.+.++| +  ....+.|.+|+||||++..+. ++| +|+||+||+...|.... |+|||||++|++||+++|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~-~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~~v~~  241 (242)
T d1q3xa1         165 RGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERW-FVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD  241 (242)
T ss_dssp             TTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEE-EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CceeccceeeeeccCCCccccccccccceEEeeCCCCeE-EEEEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHHHHHc
Confidence            3456778888 5  667788999999999987654 577 99999999886687766 99999999999999999874

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=110.51  Aligned_cols=65  Identities=40%  Similarity=0.729  Sum_probs=55.8

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcC-CcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRIT-AYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~-~~~~WI~~~~~~   80 (82)
                      ....+.++| +  ....+.|.||+||||++..      +|+||+|++.. |.... |+|||||+ +|++||+++|++
T Consensus       167 ~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~~------~l~Gi~S~g~~-c~~~~~p~vftrvs~~y~~WI~~~i~~  236 (240)
T d1mzaa_         167 PFITKDMVCAGDAKGQKDSCKGDAGGPLICKG------VFHAIVSGGHE-CGVATKPGIYTLLTKKYQTWIKSNLVP  236 (240)
T ss_dssp             TCCCTTEEEEECTTSCCCCCTTCTTCEEEETT------EEEEEECSSCC-SSCTTCCEEEEECCHHHHHHHHHHTCC
T ss_pred             cccccceEEeccCCCCccCccCCCCCeEEECC------EEEEEEEeCCC-CCCCCCCeEEEEEHHHHHHHHHHHccC
Confidence            346688889 5  5578899999999999854      99999999987 88766 99999998 689999999975

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.3e-19  Score=107.79  Aligned_cols=68  Identities=38%  Similarity=0.722  Sum_probs=58.5

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..+..+++| .  ......|.||+||||++... ++| +|+||+||+.. |.... |.+||||+.|++||+++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~-~~~-~L~Gv~s~g~~-c~~~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         162 FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFK-DTY-FVTGIVSWGEG-CARKGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             SCCCTTEEEESCSSSSCBCCTTTTTCEEEEEET-TEE-EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             ceEeecceeeecccccCCCcCCCcccccEEecC-CeE-EEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            345667777 3  66788999999999999884 778 99999999998 87766 9999999999999999985

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.8e-19  Score=107.85  Aligned_cols=68  Identities=35%  Similarity=0.769  Sum_probs=57.4

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .+.+..+| +  ....+.|.||+||||++..+ ++| +|+||+|++.. |.... |.+||||++|++||+++|+-
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~-~~~-~l~Gi~s~g~~-~~~~~~p~vyt~v~~~~~WI~~~~~~  234 (235)
T d1rfna_         163 TIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVE-GTS-FLTGIISWGEE-CAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             CCCTTEEEESCSSCSCBCCTTCTTCEEEEESS-SCE-EEEEEEEEESS-SSCTTCCEEEEEGGGTHHHHHHHHCC
T ss_pred             eecCCeeEeecCCCCccccCCCCCceeEEecC-CeE-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHhcC
Confidence            34555666 4  66788999999999999774 677 99999999998 87766 99999999999999999863

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.5e-19  Score=108.88  Aligned_cols=70  Identities=40%  Similarity=0.685  Sum_probs=59.5

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ....+.++| .  ......|.||+||||++... ++| +|+||+||+.. |.... |++||||+.|++||+++|+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~~-~~~-~lvGi~S~g~~-c~~~~~p~vytrv~~~~~WI~~~i~~~  242 (254)
T d2bz6h1         169 PNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR-GTW-YLTGIVSWGQG-CATVGHFGVYTRVSQYIEWLQKLMRSE  242 (254)
T ss_dssp             CCCCTTEEEESCSSSSCBCCGGGTTCEEEEEET-TEE-EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHTSC
T ss_pred             ccccccceeeeccCCCcccccCccccceEEccC-CeE-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHhhC
Confidence            345566666 3  66788999999999999874 778 99999999988 87666 999999999999999999764

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=99.78  E-value=2.8e-19  Score=108.74  Aligned_cols=66  Identities=39%  Similarity=0.741  Sum_probs=57.4

Q ss_pred             CCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086          8 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         8 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ...+++.+|| +  ....+.|.||+||||++..      +|+||+|++.. |.... |.+||||+.|++||+++|+.
T Consensus       152 ~~~~~~~~~C~~~~~~~~~~c~gdsGgPl~~~~------~l~Gi~S~g~~-~~~~~~p~v~t~v~~y~~WI~~~i~~  221 (222)
T d1hj8a_         152 PGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNG------ELQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             TTCCCTTEEEESCTTSSCBCCTTCTTCEEEETT------EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             ccccccceEEEccCCCCcccccCCcccEEEECC------EEEEEEEEecC-CCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence            3467899999 5  5567889999999999854      89999999988 87666 99999999999999999975

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.78  E-value=5.1e-20  Score=112.49  Aligned_cols=59  Identities=36%  Similarity=0.727  Sum_probs=52.9

Q ss_pred             CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         19 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        19 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ....+.|.+|+|+||++....++| +|+||+||+.. |.... |+|||||+.|++||+++|+
T Consensus       162 ~~~~~~c~~~~G~pl~~~~~~~~~-~L~Gi~s~~~~-c~~~~~p~vft~V~~y~~WI~~~~k  221 (223)
T d1os8a_         162 TGGVDTCQGDSGGPMFRKDNADEW-IQVGIVSWGYG-CARPGYPGVYTEVSTFASAIASAAR  221 (223)
T ss_dssp             TCCCBCCTTCTTCEEEEECTTSCE-EEEEEEEECSS-SSCTTCCEEEEEHHHHHHHHHHHHH
T ss_pred             cCCcCccccccccceEEecCCCeE-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            556788999999999998876788 99999999988 87766 9999999999999999985

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.8e-19  Score=109.40  Aligned_cols=68  Identities=38%  Similarity=0.663  Sum_probs=58.1

Q ss_pred             CCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          8 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         8 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ...+.++++| .  ....+.|.||+|+||++..      +|+||+|||...|.... |.+||||+.|++||+++|++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~~------~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i~~n  236 (237)
T d1ao5a_         165 LQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKN  236 (237)
T ss_dssp             SSCCCTTEEEEECTTCSCBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHHC
T ss_pred             cCCCCCCeEEEccCCCCCcccCCCCCCeeEEcc------EEEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHHHhc
Confidence            3456788888 4  5677899999999999854      99999999976687666 999999999999999999876

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4e-19  Score=110.03  Aligned_cols=68  Identities=40%  Similarity=0.761  Sum_probs=58.9

Q ss_pred             cCCCCeee-c-CCCCCCCcCCCCceeEEEeCC--CceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         10 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNND--TRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        10 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~--~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .+++.++| + ..+.+.|.||+||||++...+  ++| +|+||+|++.. |..  |.+||||+.|++||+++|+++
T Consensus       187 ~~~~~~~~~~~~~~~~~c~gDsGgPl~~~~~~~~~~~-~l~Gi~S~~~~-c~~--p~vft~V~~~~~WI~~~i~~~  258 (259)
T d1elva1         187 VFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKF-YAAGLVSWGPQ-CGT--YGLYTRVKNYVDWIMKTMQEN  258 (259)
T ss_dssp             CCCTTEEEEECSTTCBCCTTCTTCEEEEECSSCTTCE-EEEEEEEECSS-TTS--EEEEEEGGGGHHHHHHHHHHT
T ss_pred             eeecceeeccCCCCCccCCCCcCCeEEEEecCCCcEE-EEEEEEEeCCC-CCC--ceEEeEHHHHHHHHHHHHHhc
Confidence            46788888 5 777899999999999987643  467 99999999987 853  899999999999999999876

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2e-19  Score=109.51  Aligned_cols=66  Identities=42%  Similarity=0.797  Sum_probs=57.1

Q ss_pred             CCcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086          8 DISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus         8 ~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ...+++++|| . ..+.+.|.||+|+||++..      +|+||+|++...|.... |++||||+.|++||+++|+
T Consensus       157 ~~~~~~~~~C~~~~~~~~~c~gd~G~pl~~~~------~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         157 PGKITEGMVCAGSSNGADTCQGDSGGPLVCDG------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             TTTCCTTEEEEECTTCCBCCTTCTTCEEEETT------EEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             cCCcCCCEEEecCCCCCccccCCCCceEEEcc------EEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            3457899999 5 6678899999999999853      99999999977687666 9999999999999999874

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=107.24  Aligned_cols=69  Identities=32%  Similarity=0.615  Sum_probs=59.2

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCC-CceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNND-TRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~-~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..+.++++| .  ....+.|.||+|+||++.... ++| +|+||+||+.. |... |+|||||++|++||+++|++
T Consensus       168 ~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~-~l~Gi~S~g~~-c~~~-p~vft~v~~~~~WI~~~i~~  240 (240)
T d2qy0b1         168 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRW-VATGIVSWGIG-CSRG-YGFYTKVLNYVDWIKKEMEE  240 (240)
T ss_dssp             CCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCE-EEEEEEEECSS-SSSS-CEEEEEGGGGHHHHHHHTTC
T ss_pred             CceecceEEeccCCccceeeccccccceEEEeCCCCeE-EEEEEEEECCC-CCCC-CeEEEEHHHHHHHHHHHhcC
Confidence            346789999 5  667889999999999998764 456 99999999987 8754 99999999999999999975

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=5.4e-19  Score=107.66  Aligned_cols=67  Identities=39%  Similarity=0.799  Sum_probs=58.5

Q ss_pred             CCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          8 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         8 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ...+.++++| +  ..+...|.||+|+||++..      +|+||+|++.. |.... |.+||||+.|++||+++|++|
T Consensus       153 ~~~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~~------~L~Gi~s~~~~-~~~~~~p~vft~v~~~~~WI~~~i~~n  223 (223)
T d1j16a_         153 SFIITDNMVCVGFLEGGKDACQGDSGGPVVCNG------ELQGIVSWGYG-CALPDNPGVYTKVCNYVDWIQDTIAAN  223 (223)
T ss_dssp             SCCCCTTEEEESCTTCSCBCCTTCTTCEEEETT------EEEEEEEECSS-SSCTTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             cceeCCCceEEecCCCCCcccCCccCCcEEEee------EEEEEEEEccC-CCCCCCCEEEEEhHHhHHHHHHHHhcC
Confidence            3457889999 6  5677889999999999854      89999999998 87766 999999999999999999875

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.1e-19  Score=108.39  Aligned_cols=67  Identities=34%  Similarity=0.664  Sum_probs=56.2

Q ss_pred             CCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC-CCCCCC-CcEEEEcC-CcHHHHHHHhhc
Q psy17086          8 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRIT-AYLPWIIARMAY   80 (82)
Q Consensus         8 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~-~c~~~~-p~vyt~v~-~~~~WI~~~~~~   80 (82)
                      ...++++++| +  ....+.|.||+|+||++..      +|+||+|||.. .|+... |+|||||+ .|++||+++|+.
T Consensus       160 ~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~~------~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i~g  232 (232)
T d1orfa_         160 NPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKG  232 (232)
T ss_dssp             TTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT------EEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHCC
T ss_pred             CccccCceEEeccCCCCcccccccCCCeEEEcC------EEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHHHHHhCC
Confidence            4557899999 5  5568899999999999854      99999999753 377766 99999997 699999999863

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=8.2e-19  Score=106.34  Aligned_cols=66  Identities=39%  Similarity=0.771  Sum_probs=57.5

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+.+.++| .  ....+.|.||+|+||++..      +|+||+||+.. |.... |.+||||++|++||+++|++|
T Consensus       154 ~~~~~~~~c~~~~~~~~~~~~gd~g~pl~~~~------~L~Gi~S~g~~-c~~~~~p~vyt~v~~~~~WI~~~i~~~  223 (223)
T d1hj9a_         154 GQITSNMFCAYGLEGKGDSCQGDSGGPVVCSG------KLQGIVSWGSG-CQAKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             TTCCTTEEECCCCCCCCCCCTTCTTCEEEETT------EEEEEEEECSC-CCCCCCCCEEEEGGGGHHHHHHHHTTC
T ss_pred             CcccccceEEeecCCCcccccCCCCceeEEeC------EEEEEEEEcCC-CCCCCCCEEEEEHHHHHHHHHHHHhcC
Confidence            456788888 5  5677899999999999854      89999999988 87666 999999999999999999875

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6e-19  Score=107.16  Aligned_cols=64  Identities=36%  Similarity=0.680  Sum_probs=55.1

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ..++++++| .  ....+.|.||+||||++..      +|+||+|++.. |... |.+||||+.|++||+++|+.
T Consensus       158 ~~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~~------~l~Gi~S~g~~-~~~~-p~vyt~v~~y~~WI~~~i~~  224 (224)
T d1t32a1         158 SYDPRRQICVGDRRERKAAFKGDSGGPLLCNN------VAHGIVSYGKS-SGVP-PEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             TCCTTTEEEECCTTSSCBCCTTCTTCEEEETT------EEEEEEEECCT-TCCS-CEEEEEGGGSHHHHHHHHCC
T ss_pred             cccccccceeecccccccccccCcCCeEEEcC------EEEEEEEEcCC-CCCC-CcEEEEHHHhHHHHHHHHcC
Confidence            456788998 4  6678899999999999854      99999999987 7644 99999999999999999874

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.7e-19  Score=108.86  Aligned_cols=67  Identities=45%  Similarity=0.752  Sum_probs=58.6

Q ss_pred             CCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086         11 VTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        11 i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      +...++| +......|.||+||||++... ++| +|+||+|++.. |.... |.+||||+.|++||+++|++
T Consensus       175 ~~~~~~~~~~~~~~~~~gdsGgpl~~~~~-~~~-~L~Gi~s~~~~-~~~~~~p~v~t~v~~y~~WI~~~i~~  243 (243)
T d2fpza1         175 VRDDMLCAGNTRRDSCQGDSGGPLVCKVN-GTW-LQAGVVSWGEG-CAQPNRPGIYTRVTYYLDWIHHYVPK  243 (243)
T ss_dssp             SCTTEEEECCSSSBCCTTCTTCEEEEEET-TEE-EEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHTTTSCC
T ss_pred             eeeeeEecCCCCCCCccCCCCCeEEEeeC-CEE-EEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHhCC
Confidence            4566777 788889999999999998874 778 99999999987 77666 99999999999999999874

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=99.77  E-value=6.5e-19  Score=106.60  Aligned_cols=64  Identities=41%  Similarity=0.938  Sum_probs=56.2

Q ss_pred             cCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         10 SVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .+.+.++| + ....+.|.+|+|+||++..      +|+||+|++.. |....|.+||||+.|++||+++|++
T Consensus       157 ~~~~~~~c~~~~~~~~~c~~d~G~pl~~~~------~L~GI~s~~~~-c~~~~p~vyt~v~~y~~WI~~~i~~  222 (222)
T d1eq9a_         157 RVIDSHICTLTKRGEGACHGDSGGPLVANG------AQIGIVSFGSP-CALGEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             SCCTTEEEECCCTTCBCCTTCTTCEEEETT------EEEEEEEECST-TTSSSCEEEEEGGGGHHHHHHTSCC
T ss_pred             cccCcceEeccCCCCCccccCCcCCEEEcC------EEEEEEEECCC-CCCCCCcEEEEHHHHHHHHHHHhcC
Confidence            45778899 5 6678899999999999843      89999999987 9876799999999999999999874

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=99.76  E-value=1.1e-18  Score=106.93  Aligned_cols=67  Identities=39%  Similarity=0.724  Sum_probs=57.8

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      ..+.+.++| .  ....+.|.+|+|+||++.. +++| +|+||+|++.. |.... |.+||||+.|++||++++
T Consensus       166 ~~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~-~~~~-~L~Gi~S~g~~-c~~~~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         166 DEILDSMICAGVPEGGKDSCQGDSGGPLAASD-TGST-YLAGIVSWGYG-CARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             TTSCTTEEEECCTTCCCBCCTTCTTCEEEECT-TSSC-EEEEEEEEESS-SSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             CcccCceeEeecCCCccccccCCCCCeEEEec-CCeE-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHhC
Confidence            456788889 5  6667889999999999986 4788 99999999987 87766 999999999999999865

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.4e-18  Score=105.95  Aligned_cols=67  Identities=39%  Similarity=0.803  Sum_probs=57.6

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      ....+.++| .  ....+.|.||+|+||++... ++| +|+||+|++.. |.... |.+||||..|++||+++|
T Consensus       164 ~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~-~~~-~l~Gi~S~g~~-~~~~~~p~v~t~v~~y~~WI~~~i  234 (235)
T d1ekbb_         164 YNITENMVCAGYEAGGVDSCQGDSGGPLMCQEN-NRW-LLAGVTSFGYQ-CALPNRPGVYARVPRFTEWIQSFL  234 (235)
T ss_dssp             SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEET-TEE-EEEEEEEECSS-SSCTTCCEEEEEGGGTHHHHHTTC
T ss_pred             cccCcccEEEEcCCCCcccccCCCCCccEEccC-CEE-EEEEEEEecCC-CCCCCCCEEEEEHHHHHHHHHHhh
Confidence            446788899 4  55667899999999999874 677 99999999998 77665 999999999999999886

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=99.76  E-value=9.6e-19  Score=106.59  Aligned_cols=68  Identities=41%  Similarity=0.769  Sum_probs=58.5

Q ss_pred             CCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhccC
Q psy17086          8 DISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYEV   82 (82)
Q Consensus         8 ~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~~   82 (82)
                      ...+++.++| +  ....+.|.+|+|+||++..      +|+||+|++.. |.... |.+||||++|++||++++++|.
T Consensus       157 ~~~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~~------~l~Gi~s~g~~-~~~~~~p~vft~v~~~~~WI~~~i~~~~  228 (228)
T d1fxya_         157 PGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNG------QLQGVVSWGDG-CAQKNKPGVYTKVYNYVKWIKNTIAANS  228 (228)
T ss_dssp             TTTCCTTEEEESCTTCSCBCCTTCTTCEEEETT------EEEEEEEECSS-SSBTTBCEEEEEGGGGHHHHHHHHHHTC
T ss_pred             CCcccceeeEeecCCCCcccccCccCccEEEeC------EEEEEEEECCC-CCCCCCCEEEEEHHHHHHHHHHHHHhcC
Confidence            3456788888 5  6678899999999999854      89999999988 77655 9999999999999999998863

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=99.76  E-value=2e-18  Score=105.15  Aligned_cols=69  Identities=33%  Similarity=0.647  Sum_probs=56.2

Q ss_pred             CCcCCCCeee-cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC-CCCCCC-CcEEEEcCCcHHHHHHHh
Q psy17086          8 DISVTETKFL-VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP-ECGIGS-PGIYTRITAYLPWIIARM   78 (82)
Q Consensus         8 ~~~i~~~~~C-~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~-~c~~~~-p~vyt~v~~~~~WI~~~~   78 (82)
                      ...+...++| .....+.|.+|+||||++..+ ++| +|+||+||+.. .|.... |.|||||+.|++||+++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~-~~~-~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~vi  236 (236)
T d1elta_         165 GSTVKTTMVCAGGGANSGCNGDSGGPLNCQVN-GSY-YVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             GGGSCTTEEEECCSSCBCCTTCTTCEEEEEET-TEE-EEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             ccccceeeeecCCccccccccccccceEEEEC-CeE-EEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            3445556666 566778899999999999884 677 99999999653 277666 999999999999999875

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-18  Score=105.03  Aligned_cols=66  Identities=38%  Similarity=0.785  Sum_probs=55.6

Q ss_pred             CCCeee--c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086         12 TETKFL--V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        12 ~~~~~C--~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .+..+|  . ....+.|.||+|+||++... ++| +|+||+|++.. |.... |++||||+.|++||+++|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~gd~G~pl~~~~~-~~~-~l~Gi~s~g~~-c~~~~~p~vftrv~~y~~WI~~~i~~  240 (240)
T d1autc_         171 SENMLCAGILGDRQDACEGDSGGPMVASFH-GTW-FLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWIHGHIRD  240 (240)
T ss_dssp             CTTEEEECCTTCCCBCCTTCTTCEEEEEET-TEE-EEEEEEEECSS-SSCTTCCEEEECGGGTHHHHHHHHC-
T ss_pred             ccceeeeccccccCCCcCCccCceeEEcCC-CCE-EEEEEEEeCCC-CCCCCCCeEEEEHHHHHHHHHHHhCC
Confidence            344445  3 67788999999999999874 788 99999999987 87666 99999999999999999974

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=8.7e-19  Score=106.66  Aligned_cols=67  Identities=34%  Similarity=0.706  Sum_probs=56.2

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ....+.++| +  .+....|.+|+|+||++..      +|+||+|+|...|.... |++||||+.|++||+++|++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~~------~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~~n  227 (228)
T d1sgfa_         157 MKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANN  227 (228)
T ss_dssp             SBCCTTEEEEEECSSSEEECCCCTTCEEEETT------EEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHSC
T ss_pred             CCcccceEEeccCCCCccccCCCcCCcEEEeC------EEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHhHC
Confidence            345667777 4  5567889999999999854      99999999875587666 999999999999999999875

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3e-18  Score=104.07  Aligned_cols=64  Identities=45%  Similarity=0.839  Sum_probs=53.7

Q ss_pred             cCCCCeee--c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         10 SVTETKFL--V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        10 ~i~~~~~C--~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      .+.+.++|  . ..+...|.||+||||++..      +|+||+|||...|.... |++||||+.|++||+++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~------~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         154 QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             TCCTTEEEEECTTTCCBCCTTTTTCEEEETT------EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CccCCceeeeccccCCCCccCCCCCcEEECC------EEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            34455555  3 6788889999999999865      89999999886687666 9999999999999999985

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.8e-18  Score=103.05  Aligned_cols=62  Identities=24%  Similarity=0.546  Sum_probs=52.1

Q ss_pred             CCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         12 TETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        12 ~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ...+.| .  ....+.|.||+||||++..      +|+||+||+...|.... |.+||||+.|++||+++++
T Consensus       153 ~~~~~~~~~~~~~~~~C~gdsG~Pl~~~~------~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         153 RRSNVCTLVRGRQAGVCFGDSGSPLVCNG------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             CTTSEEEECTTSCCBCCTTCTTCEEEETT------EEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ceeeeeeeecCcccCccccccCCCEEECC------EEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence            345666 3  5566789999999999854      99999999866588777 9999999999999999985

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.4e-18  Score=102.43  Aligned_cols=63  Identities=43%  Similarity=0.830  Sum_probs=52.7

Q ss_pred             CCCCeee--cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         11 VTETKFL--VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        11 i~~~~~C--~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      .....+|  .....+.|.||+|+||++..      +|+||+|++...|.... |++||||+.|++||+++|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~gdsG~Pl~~~~------~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i~  228 (228)
T d1bioa_         163 AITERLMCAESNRRDSCKGDSGGPLVCGG------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             CCCTTEEEECCSSCBCCTTTTTCEEEETT------EEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             cccccceeecccCCCcccCCcCccEEEcC------EEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            3444455  47788999999999999854      99999999876687666 9999999999999999874

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.8e-18  Score=105.35  Aligned_cols=63  Identities=35%  Similarity=0.586  Sum_probs=52.6

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ...+.++| +  ....+.|.||+||||++..      +|+||+|++.. |.. .|.+||||+.|++||+++|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~------~l~Gi~S~g~~-~~~-~p~vyt~v~~y~~WI~~~i~~  227 (227)
T d1fi8a_         162 FDKANEICAGDPKIKRASFRGDSGGPLVCKK------VAAGIVSYGQN-DGS-TPRAFTKVSTFLSWIKKTMKK  227 (227)
T ss_dssp             CCTTTEEEESCTTSCCBCCTTCTTSEEEETT------EEEEEEEEEET-TCC-SCEEEEEGGGGHHHHHHHHCC
T ss_pred             cccceeeeeeeccccCCCcCCCcCCEEEECC------EEEEEEEEcCC-CCC-CCeEEEEHHHHHHHHHHHHcC
Confidence            34556666 4  6678889999999999853      99999999987 753 499999999999999999874

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=99.72  E-value=7.1e-18  Score=102.32  Aligned_cols=63  Identities=40%  Similarity=0.668  Sum_probs=52.4

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHH
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIAR   77 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~   77 (82)
                      ..+.+.++| .  ..+.+.|.+|+||||++.    +| +|+||+||+.. |.... |.|||||++|++||++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~c~~dsG~pl~~~----~~-~l~GI~S~g~~-c~~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         157 SAITNQMFCAGVSSGGKDSCQGDSGGPIVDS----SN-TLIGAVSWGNG-CARPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             TTSCTTEEEECCTTCCCBCCTTCTTCEEECT----TC-CEEEEEEECSS-SSCTTCCEEEEETTTTHHHHHHH
T ss_pred             CccccceeeeecCCCCccccccccCCceEec----CC-EEEEEEEeCCC-CCCCCCCEEEEEHHHHHHHHHHC
Confidence            345667777 4  667788999999999953    34 89999999998 88766 99999999999999864

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.72  E-value=1.9e-18  Score=105.35  Aligned_cols=67  Identities=25%  Similarity=0.432  Sum_probs=56.6

Q ss_pred             CcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086          9 ISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus         9 ~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ..+.+.++| .  ......|.||+|+||++..      +|+||+||+...|.... |.+||||+.|++||+++|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~------~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~WI~~~i~~~  236 (237)
T d1gvza_         166 EKMTEFVLCATHRDDSGSICLGDSGGALICDG------VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEKN  236 (237)
T ss_dssp             GGCCTTEEEEECSSTTCEECGGGTTCEEEETT------EEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHHHH
T ss_pred             cccccccccceecccccccccCCCCCcEEEcC------EEEEEEEeccCCCCCCCCCeEEEEHHHHHHHHHHHHHhc
Confidence            345666777 4  6678899999999999854      99999999986676655 999999999999999999876

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.2e-18  Score=103.18  Aligned_cols=63  Identities=33%  Similarity=0.591  Sum_probs=50.5

Q ss_pred             CCCCeee--c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhcc
Q psy17086         11 VTETKFL--V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        11 i~~~~~C--~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      .....+|  . ....+.|.||+||||++..      +|+||+|++.. |.. .|.+||||+.|++||+++|++|
T Consensus       159 ~~~~~~~~~~~~~~~~~c~gDsG~PL~~~~------~l~GI~s~g~~-~~~-~p~vyt~v~~y~~WI~~~i~~n  224 (224)
T d1nn6a_         159 DHNLQLCVGNPRKTKSAFKGDSGGPLLCAG------VAQGIVSYGRS-DAK-PPAVFTRISHYRPWINQILQAN  224 (224)
T ss_dssp             CTTTEEEECCTTTC--CCCCCTTCEEEETT------EEEEEEEECCT-TCC-SCEEEEEHHHHHHHHHHHHHTC
T ss_pred             ccceeeeccCccccccccCCCccceEEECC------EEEEEEEECCC-CCC-CCeEEEEHHHHHHHHHHHHhcC
Confidence            3455566  3 5567799999999999853      99999999976 543 4999999999999999999875

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=1.7e-17  Score=100.71  Aligned_cols=60  Identities=43%  Similarity=0.736  Sum_probs=50.3

Q ss_pred             CCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhh
Q psy17086         12 TETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        12 ~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      .+.++| .  ....+.|.+|+||||++..      +|+||+|++.. |.. .|.+||||+.|++||+++|+
T Consensus       162 ~~~~~~~~~~~~~~~~c~~dsGgpl~~~~------~l~Gi~s~g~~-~~~-~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         162 PFTQICAGDPSKRKNSFSGDSGGPLVCNG------VAQGIVSYGRN-DGT-TPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             TTTEEEESCTTSCCBCCTTCTTCEEEETT------EEEEEEEECCT-TCC-SCEEEEEGGGTHHHHHHHTC
T ss_pred             ccceeeeeccccccccccCCCCCeEEEcC------EEEEEEEEcCC-CCC-CCeEEEEHHHHHHHHHHHhC
Confidence            444444 3  6788899999999999854      99999999987 753 49999999999999999985

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=99.69  E-value=5.1e-17  Score=99.15  Aligned_cols=64  Identities=44%  Similarity=0.847  Sum_probs=54.2

Q ss_pred             CCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         12 TETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        12 ~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      ...++| .  ....+.|.||+|+||++..      +|+||+||+...|+... |.+||||+.|++||+++|+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~G~Pl~~~~------~l~Gi~S~g~~~c~~~~~p~vft~v~~y~~WI~~~i~~~  227 (234)
T d1op0a_         160 EYRTLCAGIVQGGKDTCGGDSGGPLICNG------QFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGN  227 (234)
T ss_dssp             TSCEEEEECTTCCCBCCTTCTTCEEEETT------EEEEEEEECCSSTTCTTSCEEEEESGGGHHHHHHHHHTC
T ss_pred             eeeeeeecccccccccccCCCCceEEEcC------EEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhhc
Confidence            345555 3  6678899999999999754      89999999876688776 999999999999999999865

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=99.68  E-value=4.1e-17  Score=99.26  Aligned_cols=61  Identities=36%  Similarity=0.772  Sum_probs=50.3

Q ss_pred             CCeee--cCCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCC-CCC-CcEEEEcCCcHHHHHHHhhc
Q psy17086         13 ETKFL--VFPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECG-IGS-PGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        13 ~~~~C--~~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~-~~~-p~vyt~v~~~~~WI~~~~~~   80 (82)
                      +.++|  .....+.|.||+|+||++..      +|+||+|++.. |. ... |++||||+.|++||+++|+-
T Consensus       160 ~~~~~~~~~~~~~~c~gdsG~Pl~~~~------~l~Gi~S~g~~-~~~~~~~p~v~t~v~~y~~WI~~~~g~  224 (226)
T d1azza_         160 DGNICIDSTGGKGTCNGDSGGPLNYNG------LTYGITSFGAA-AGCEAGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             TTEEEECCTTTCBCCTTCTTCEEEETT------EEEEEEEEEET-TCTTSCCCEEEEESGGGHHHHHHHHCC
T ss_pred             ccceeccccCCCccccCCcCCCEEEcC------EEEEEEEEeCC-CCCCCCCCEEEEEHHHhHHHHHHHhCC
Confidence            34444  57788999999999998754      99999999887 43 334 99999999999999999864

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=99.68  E-value=1.1e-16  Score=97.42  Aligned_cols=69  Identities=35%  Similarity=0.681  Sum_probs=56.0

Q ss_pred             CCcCCCCeee-c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCC-CCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086          8 DISVTETKFL-V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPE-CGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus         8 ~~~i~~~~~C-~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~-c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .....+.++| . ....+.|.||+|+||++.+   +| +|+||+||+... |....|.+||||++|++||+++|+-
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~gdsGgp~~~~~---~~-~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~~~~  228 (230)
T d2hlca_         157 PGIIVESTICGDTSDGKSPCFGDSGGPFVLSD---KN-LLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGI  228 (230)
T ss_dssp             TTSSCTTEEEECCTTSCBCCTTCTTCEEEEGG---GT-EEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHCC
T ss_pred             cccccccceEeccccCccccccccCCCeEECC---Ce-EEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhCC
Confidence            3445677888 5 7778899999999999864   56 999999998753 3444499999999999999999864

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.7e-17  Score=98.36  Aligned_cols=55  Identities=31%  Similarity=0.645  Sum_probs=48.9

Q ss_pred             CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHHHHHhh
Q psy17086         19 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        19 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI~~~~~   79 (82)
                      ..+.+.|.||+||||++..      +|+||+||+...|.... |.|||||+.|++||+++|+
T Consensus       166 ~~~~~~c~gd~G~pl~~~~------~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         166 RRKAGICFGDSGGPLICDG------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             SSSCBCCTTCTTCEEEETT------EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             cCCCceeCCccCCCEEEeC------EEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            7788999999999999864      99999999875587666 9999999999999999985

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.67  E-value=7.3e-17  Score=98.12  Aligned_cols=62  Identities=35%  Similarity=0.623  Sum_probs=51.8

Q ss_pred             cCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhh
Q psy17086         10 SVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        10 ~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~   79 (82)
                      .....++| .  ......|.+|+||||++..      +|+||+||+.. |.. .|.|||||++|++||+++|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~~------~l~Gi~S~g~~-~~~-~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         160 YEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG------VAHGIVSYGHP-DAK-PPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             CCTTTEEEECCTTSCCBCCTTTTTCEEEETT------EEEEEEEECCT-TCC-SCEEEEEHHHHHHHHHHHHC
T ss_pred             ccccceeeeccCcccccCcCCCcCCeEEEcC------EEEEEEEECCC-CCC-CCeEEEEHHHHHHHHHHHhC
Confidence            35567777 4  6677889999999999854      99999999976 643 49999999999999999874

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.3e-18  Score=102.86  Aligned_cols=61  Identities=34%  Similarity=0.608  Sum_probs=50.9

Q ss_pred             CCCeee--c-CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         12 TETKFL--V-FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        12 ~~~~~C--~-~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .+.++|  . ....+.|.||+|+||++..      +|+||+|++.. |.. .|.+||||+.|++||+++|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~gdsG~pl~~~~------~l~GI~s~g~~-~~~-~p~vyt~v~~y~~WI~~~i~~  226 (227)
T d1fq3a_         163 STIELCVGDPEIKKTSFKGDSGGPLVCNK------VAQGIVSYGRN-NGM-PPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             TTTEECCSCTTSSCBCCTTCTTCBCBSSS------SCCCEECCCCT-TSC-SCCCEECHHHHHHHHHHHTTC
T ss_pred             ccceeeeeccccccccccCCCCceEEEeC------EEEEEEEEcCC-CCC-CCcEEEEHHHHHHHHHHHHHh
Confidence            344444  3 6678899999999999854      89999999987 764 399999999999999999975

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-16  Score=95.16  Aligned_cols=55  Identities=31%  Similarity=0.654  Sum_probs=48.0

Q ss_pred             CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         19 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        19 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      ....+.|.||+|+||++..      +|+||+||+...|. ..|++||||+.|++||++++++
T Consensus       165 ~~~~~~c~gdsG~Pl~~~~------~l~Gi~S~~~~~c~-~~p~v~t~v~~y~~WI~~~i~~  219 (225)
T d1a7sa_         165 TRRGGICNGDGGTPLVCEG------LAHGVASFSLGPCG-RGPDFFTRVALFRDWIDGVLNN  219 (225)
T ss_dssp             SSSCBCCTTCTTCEEEETT------EEEEEEEEECSSTT-SSCEEEEEGGGGHHHHHHHHHS
T ss_pred             ccccccccCCCCCCEEEeC------EEEEEEEECCCCCC-CCCCEEEEHHHHHHHHHHHHCC
Confidence            6678899999999999854      99999999987454 3499999999999999999974

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=99.58  E-value=6.2e-15  Score=89.49  Aligned_cols=64  Identities=31%  Similarity=0.628  Sum_probs=49.4

Q ss_pred             CCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC---CCCCCC-CcEEEEcCCcHHHHHHH
Q psy17086         11 VTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP---ECGIGS-PGIYTRITAYLPWIIAR   77 (82)
Q Consensus        11 i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~---~c~~~~-p~vyt~v~~~~~WI~~~   77 (82)
                      ..+..+| +  ....+.|.||+||||++..  +.+ +|+||+|+...   .|.... |++||||+.|++||+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~g~sGgpl~~~~--~~~-~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~WI~~n  240 (241)
T d1m9ua_         170 IWDNHICVQDPAGNTGACNGDSGGPLNCPD--GGT-RVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN  240 (241)
T ss_dssp             CCTTEEEECCTTSCCBCCTTCTTCEEEEES--SSE-EEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHH
T ss_pred             cccceeEeecccCCcCcccCCCCcceEEec--CCE-EEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHc
Confidence            3455555 3  6678899999999999876  556 89999986432   144444 99999999999999976

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.43  E-value=1.9e-14  Score=89.53  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             CCCcCCCCeee-c--CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCC---CCCCCcEEEEcCCcHHHHHH
Q psy17086          7 GDISVTETKFL-V--FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPEC---GIGSPGIYTRITAYLPWIIA   76 (82)
Q Consensus         7 ~~~~i~~~~~C-~--~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c---~~~~p~vyt~v~~~~~WI~~   76 (82)
                      +...+...++| .  ....+.|.|||||||++.+.     .++|++|++...|   ....|.+||||+.|..||..
T Consensus       169 ~~~~~~~~~~c~~~~~~~~~~c~GDSGGPL~~~~g-----~~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~~~  239 (263)
T d1arba_         169 WGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPEK-----RVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGA  239 (263)
T ss_dssp             TTSSSCSSEEEEECCTTSCCCCTTCTTCEEECTTS-----CEEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTSS
T ss_pred             cCCCCCccEEEEEecCCCccccCCCCcceEEecCC-----CEEEEEEEEEeCCcCCCCCCCceEEEEEEeeccCCc
Confidence            34556788999 4  66778999999999997543     6888888876444   44349999999987655543

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=98.98  E-value=7.9e-12  Score=74.72  Aligned_cols=52  Identities=17%  Similarity=0.392  Sum_probs=41.9

Q ss_pred             CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCC-CC-CcEEEEcCCcHHHHHH
Q psy17086         19 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGI-GS-PGIYTRITAYLPWIIA   76 (82)
Q Consensus        19 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~-~~-p~vyt~v~~~~~WI~~   76 (82)
                      ....+.|.|||||||+..    .+ .|+||.|++.. +.. .. |.+|++|..|++||++
T Consensus       161 ~~~~~~~~G~SGgPl~~~----~~-~lvGi~s~g~~-~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         161 YYTIDTFSGNSGSAMLDQ----NQ-QIVGVHNAGYS-NGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             EECCCCCTTCTTCEEECT----TS-CEEEECCEEEG-GGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             eeecccCCCCccCeEECC----CC-EEEEEEEeccC-CCCCCCCeEEEeEHHHHHHHHHc
Confidence            345678999999999943    34 89999999877 543 33 8899999999999986

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=98.97  E-value=2.4e-10  Score=66.71  Aligned_cols=49  Identities=24%  Similarity=0.245  Sum_probs=40.7

Q ss_pred             CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC-CcEEEEcCCcHHHH
Q psy17086         19 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS-PGIYTRITAYLPWI   74 (82)
Q Consensus        19 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~-p~vyt~v~~~~~WI   74 (82)
                      ..+...|.|||||||+...      .++||+|++.. |.... +.+|++|+.++++.
T Consensus       133 ~~~~~~~~GDSGgPl~~~~------~~vGi~s~g~~-~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         133 RTTACSAGGDSGGAHFAGS------VALGIHSGSSG-CSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EECCCCCTTCTTCEEEETT------EEEEEEEEESC-CBTTBCCCEEEEHHHHHHHH
T ss_pred             EcCcccccCCCCCeEEECC------EEEEEEEEEec-CCCCCCCEEEEEHHHHHHHh
Confidence            5677889999999999754      79999999988 55444 99999999888764

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=97.91  E-value=1.5e-06  Score=50.74  Aligned_cols=45  Identities=33%  Similarity=0.508  Sum_probs=34.0

Q ss_pred             CCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHH
Q psy17086         24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWI   74 (82)
Q Consensus        24 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI   74 (82)
                      ...|||||||+..+      .++||++.+...|.......|+.|..+++++
T Consensus       132 ~~~GdSGGPv~~~~------~~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         132 AQPGDSGGSLFAGS------TALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CCTTCTTCEEEETT------EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             ccCCCcCCeeEECC------EEEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            45799999999643      7999999987634333378999988777654

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.74  E-value=3.8e-06  Score=49.66  Aligned_cols=51  Identities=16%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~~~~   80 (82)
                      .+.|.|+|||||+-..  +   .++||.+++.. ... ..+++.. ....+||++.++.
T Consensus       162 ~~~~~G~SGgPv~~~~--g---~vVGI~s~g~~-~~~-~~~v~~~-~~~~~~i~~~i~~  212 (216)
T d2o8la1         162 LSTTGGNSGSPVFNEK--N---EVIGIHWGGVP-NEF-NGAVFIN-ENVRNFLKQNIED  212 (216)
T ss_dssp             CCCCTTCTTCEEECTT--S---CEEEEEEEEET-TTE-EEEEECC-HHHHHHHHHHCTT
T ss_pred             cCcCCCCCCCcEECCC--C---EEEEEEeeecC-CCC-cceEecC-HHHHHHHHHhhhh
Confidence            4679999999998332  3   69999998864 221 1333322 3577999998864

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.05  E-value=0.0003  Score=42.04  Aligned_cols=51  Identities=16%  Similarity=0.124  Sum_probs=30.7

Q ss_pred             CCCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCC-cEEEEcCCcHHHHHHHhhc
Q psy17086         22 KDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSP-GIYTRITAYLPWIIARMAY   80 (82)
Q Consensus        22 ~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p-~vyt~v~~~~~WI~~~~~~   80 (82)
                      .+.+.|+|||||+...  |   .++||.+.+......... ..-..+.   ++|++.+++
T Consensus       188 ~~~~~G~SGgPl~~~~--g---~vVGI~~~~~~~~~~~~~~~~av~i~---~~i~~~i~~  239 (242)
T d1agja_         188 GFTVPGNSGSGIFNSN--G---ELVGIHSSKVSHLDREHQINYGVGIG---NYVKRIINE  239 (242)
T ss_dssp             CCCCGGGTTCEEECTT--S---EEEEEEEEEEECSSTTCEEEEEEECC---HHHHHHHHH
T ss_pred             cccCCccCCCcEECCC--C---eEEEEEeEeecCCCCccceEEEEeCH---HHHHHHHHH
Confidence            3567899999998432  3   799999987652222222 2223333   666666543

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=97.00  E-value=6e-05  Score=43.94  Aligned_cols=31  Identities=26%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             CCCCCCCcCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         19 FPGKDSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        19 ~~~~~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      ......+.||||||++..+.     .++||+|.+..
T Consensus       133 ~~~~~~~~GdSGGPv~~~~g-----~vvGI~sgg~~  163 (198)
T d2h5ca1         133 QGNACMGRGDSGGSWITSAG-----QAQGVMSGGNV  163 (198)
T ss_dssp             EECSCCBTTCTTCEEECTTC-----BEEEEEEEECC
T ss_pred             EEeeeeecccccccEEcCCC-----EEEEEEccccc
Confidence            34555689999999996542     68999998765

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=96.44  E-value=0.00056  Score=39.50  Aligned_cols=39  Identities=38%  Similarity=0.638  Sum_probs=26.5

Q ss_pred             CCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcC
Q psy17086         24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRIT   68 (82)
Q Consensus        24 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~   68 (82)
                      .-.|||||||+..+      .++||++.+...+.......|+.|.
T Consensus       136 ~~~GdSGGPv~~~~------~~vGi~~~g~~~~~~~~~~~~~Pi~  174 (185)
T d2qaaa1         136 AEPGDSGGPLYSGT------RAIGLTSGGSGNCSSGGTTFFQPVT  174 (185)
T ss_dssp             CCTTCTTCEEEETT------EEEEEEEEEEEETTTEEEEEEEEHH
T ss_pred             ecCCcccceeEECC------EEEEEEEEeecCCCCCceEEEEEHH
Confidence            44799999999643      7999999876523322255666643

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.76  E-value=0.015  Score=34.48  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=19.3

Q ss_pred             CcCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         25 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        25 C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      =.|+|||||+-..  |   .++||.+....
T Consensus       179 ~~G~SGGPl~n~~--G---~VIGI~~~~~~  203 (228)
T d1l1ja_         179 NPGNSGGPLLNIH--G---EVIGINTAIVN  203 (228)
T ss_dssp             CTTTTTSEEECSS--S---EEEEEECCCSC
T ss_pred             CCCCCCCcEECCC--C---EEEEEEEEEec
Confidence            3689999999655  3   79999986543

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=94.56  E-value=0.023  Score=33.66  Aligned_cols=49  Identities=16%  Similarity=0.434  Sum_probs=34.1

Q ss_pred             CCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcC-CcHHHHHHHh
Q psy17086         23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRIT-AYLPWIIARM   78 (82)
Q Consensus        23 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~-~~~~WI~~~~   78 (82)
                      .+-.|+|||||+-... |   .++||.+++..   ...-..|+-|. .+.++|.+.-
T Consensus       143 ~t~~GnSGGPlvd~~d-G---~VVGIhs~~~~---~~~~n~~~~i~~~~~~~l~~~~  192 (219)
T d1lvmb_         143 QTKDGQCGSPLVSTRD-G---FIVGIHSASNF---TNTNNYFTSVPKNFMELLTNQE  192 (219)
T ss_dssp             CCCTTCTTCEEEETTT-C---CEEEEEEEEET---TSSSEEEEECCTTHHHHHHCGG
T ss_pred             EcCCCCCCCceEEcCC-C---EEEEEEEeeec---ccceEEEEecCHHHHHHHhhcc
Confidence            4467999999997431 2   79999998754   11255678884 4888777653

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.51  E-value=0.0012  Score=39.67  Aligned_cols=54  Identities=15%  Similarity=0.120  Sum_probs=33.6

Q ss_pred             CCCcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCC-------C-CcEEEEcCCcHHHHHHHhhcc
Q psy17086         23 DSCNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIG-------S-PGIYTRITAYLPWIIARMAYE   81 (82)
Q Consensus        23 ~~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~-------~-p~vyt~v~~~~~WI~~~~~~~   81 (82)
                      +...|+|||||+-..  |   .++||.+.+.+.....       . -..+.....+.+||.+.++++
T Consensus       180 ~~~~G~SGgPv~n~~--G---~vVGI~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (246)
T d1qtfa_         180 YTEVGNSGSGIFNLK--G---ELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGNDLKKR  241 (246)
T ss_dssp             CCCGGGTTCEEECTT--C---CEEEEEEEEETTTTEEEEEETTCBCCTTTSTTCCSSCBHHHHHHHH
T ss_pred             eccCCCCCCcEECCC--C---eEEEEEecccCCCCCccceEeecccchhhhhhHHHHHHHHHHhhhh
Confidence            345799999999432  3   6999988765422211       1 233445556778887776653

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.06  Score=32.24  Aligned_cols=49  Identities=22%  Similarity=0.168  Sum_probs=29.3

Q ss_pred             CcCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCC--CcEEEEcCCcHHHHHHHhh
Q psy17086         25 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGS--PGIYTRITAYLPWIIARMA   79 (82)
Q Consensus        25 C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~--p~vyt~v~~~~~WI~~~~~   79 (82)
                      =.|.|||||+-..  |   .++||.+.... -....  .+.-.-+....+++++.++
T Consensus       196 ~~GnSGGPl~n~~--G---~vIGI~t~~~~-~~~~~~gi~faIP~~~~~~~~~~l~~  246 (249)
T d1ky9a2         196 NRGNAGGALVNLN--G---ELIGINTAILA-PDGGNIGIGFAIPSNMVKNLTSQMVE  246 (249)
T ss_dssp             TTSCCCSEEECTT--S---CEEEEEECSST-TSCCCSSSEEEEEHHHHHHHHHHHHH
T ss_pred             cCCCCCceEECCC--C---EEEEEEEEEec-cCCCcccEEEEEEHHHHHHHHHHHHH
Confidence            4689999999655  3   79999887654 22111  2222344445566655543

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.041  Score=31.71  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=18.7

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      .|+|||||+-..  |   .++||.+....
T Consensus       165 ~G~SGGPv~d~~--G---~vVGI~s~~~~  188 (205)
T d1lcya2         165 FGNAGGPLVNLD--G---EVIGVNTMKVT  188 (205)
T ss_dssp             TTTTTSEEEETT--S---CEEEEEEEEEE
T ss_pred             CCCCcCcEECCC--C---EEEEEEeeEcc
Confidence            589999998654  3   69999887543

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=92.00  E-value=0.098  Score=29.76  Aligned_cols=43  Identities=19%  Similarity=0.322  Sum_probs=28.7

Q ss_pred             cCCCCceeEEEeCCCceEEEEEEEeecCCCCCCCCCcEEEEcCCcHHHHHHH
Q psy17086         26 NGDSGGPLVWKNNDTRKHYLIGLVSYGTPECGIGSPGIYTRITAYLPWIIAR   77 (82)
Q Consensus        26 ~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~~c~~~~p~vyt~v~~~~~WI~~~   77 (82)
                      .|++||||+.... ... .++||.+.|.. .    -+..+.|  .+++|++.
T Consensus       154 ~G~cGgplv~~~~-~~~-~IvGih~aG~~-g----~G~a~~i--t~e~i~~~  196 (199)
T d2bhga1         154 AGYAGGAVLAKDG-ADT-FIVGTHSAGGN-G----VGYCSCV--SRSMLQKM  196 (199)
T ss_dssp             TTCTTCEEEEEET-TEE-EEEEEEEEEET-T----EEEEEEC--CHHHHHHH
T ss_pred             CCCcCCeEEEecC-CeE-EEEEEEeCCCC-C----EEEEEEc--cHHHHHHH
Confidence            5899999997753 334 79999998754 1    3344444  46777653

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.70  E-value=0.079  Score=30.66  Aligned_cols=26  Identities=38%  Similarity=0.445  Sum_probs=19.8

Q ss_pred             CCcCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         24 SCNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        24 ~C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      .-.|.|||||+-..  |   .++||.+....
T Consensus       159 i~~G~SGGPv~n~~--G---~vVGI~~~~~~  184 (221)
T d2z9ia2         159 INPGNSGGALVNMN--A---QLVGVNSAIAT  184 (221)
T ss_dssp             CCTTCTTEEEECTT--S---EEEEEEEEECC
T ss_pred             ccCCCCCCccCcCC--C---EEEEEEEEEec
Confidence            34589999999654  3   79999887654

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.05  Score=31.43  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=19.3

Q ss_pred             CcCCCCceeEEEeCCCceEEEEEEEeecCC
Q psy17086         25 CNGDSGGPLVWKNNDTRKHYLIGLVSYGTP   54 (82)
Q Consensus        25 C~gdsGgPl~~~~~~~~~~~l~Gi~s~g~~   54 (82)
                      =.|.|||||+-..  |   .++||.+....
T Consensus       155 ~~G~SGGPv~n~~--G---~vVGI~~~~~~  179 (210)
T d2qf3a1         155 NHGNSGGALVNSL--G---ELMGINTLSFD  179 (210)
T ss_dssp             CTTCTTCEEEETT--C---CEEEEEEEEC-
T ss_pred             EeccCCCceEeec--C---EEEEEEEEEee
Confidence            4689999999655  3   69999987654