Diaphorina citri psyllid: psy17232


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MMEGLVEESLNDDQLVSGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVWRTTRMQTGIWNAPELKTRMSM
cccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccccccEEEEEEEccHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccHHHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccHHHcccc
******************************DNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFD********************FIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVWRTTRMQTGIWNAPELKT*M**
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MMEGLVEESLNDDQLVSGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCxxxxxxxxxxxxxxxxxxxxxxxxPPNVSCIGDYDVWRTTRMQTGIWNAPELKTRMSM

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Sorting nexin-6 May be involved in several stages of intracellular trafficking. Plays a role in retrograde protein transport from endosomes to the trans-Golgi network. May function as link between transport vesicles and dynactin. Negatively regulates retrograde transport of BACE1 from the cell surface to the trans-Golgi network. May contribute to transcription regulation (By similarity). Promotes lysosomal degradation of CDKN1B.confidentQ6P8X1
Sorting nexin-6 May be involved in several stages of intracellular trafficking. Plays a role in retrograde protein transport from endosomes to the trans-Golgi network. May function as link between transport vesicles and dynactin. Negatively regulates retrograde transport of BACE1 from the cell surface to the trans-Golgi network. Promotes lysosomal degradation of CDKN1B. May contribute to transcription regulation.confidentQ5R613
Sorting nexin-6 May be involved in several stages of intracellular trafficking. Promotes lysosomal degradation of CDKN1B (By similarity). Plays a role in retrograde protein transport from endosomes to the trans-Golgi network. May function as link between transport vesicles and dynactin. Negatively regulates retrograde transport of BACE1 from the cell surface to the trans-Golgi network. May contribute to transcription regulation.confidentQ9UNH7

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0006907 [BP]pinocytosisprobableGO:0006897, GO:0016192, GO:0006810, GO:0044765, GO:0008150, GO:0051234, GO:0051179, GO:0044699
GO:0031901 [CC]early endosome membraneprobableGO:0005737, GO:0005575, GO:0043226, GO:0031090, GO:0043227, GO:0016020, GO:0044464, GO:0043229, GO:0005623, GO:0043231, GO:0044446, GO:0044444, GO:0044440, GO:0044424, GO:0005622, GO:0005768, GO:0005769, GO:0044422, GO:0010008
GO:0030512 [BP]negative regulation of transforming growth factor beta receptor signaling pathwayprobableGO:0090287, GO:0009968, GO:0090101, GO:0009966, GO:0048583, GO:0048585, GO:0017015, GO:0090288, GO:0050794, GO:0090092, GO:0023057, GO:0065007, GO:0010648, GO:0008150, GO:0023051, GO:0048519, GO:0010646, GO:0050789, GO:0048523
GO:0031313 [CC]extrinsic to endosome membraneprobableGO:0005737, GO:0005575, GO:0031090, GO:0043227, GO:0016020, GO:0044464, GO:0043229, GO:0005623, GO:0019898, GO:0044446, GO:0044444, GO:0031312, GO:0044440, GO:0043231, GO:0044424, GO:0044425, GO:0005622, GO:0005768, GO:0043226, GO:0044422, GO:0010008
GO:0046907 [BP]intracellular transportprobableGO:0009987, GO:0006810, GO:0044763, GO:0051649, GO:0008150, GO:0051234, GO:0051179, GO:0044699, GO:0051641
GO:0035091 [MF]phosphatidylinositol bindingprobableGO:0043168, GO:0005543, GO:0008289, GO:0043167, GO:0003674, GO:0005488
GO:0032009 [CC]early phagosomeprobableGO:0005737, GO:0005575, GO:0043231, GO:0016023, GO:0031410, GO:0044444, GO:0044464, GO:0043229, GO:0005623, GO:0031988, GO:0030139, GO:0045335, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0031982
GO:0070685 [CC]macropinocytic cupprobableGO:0005575, GO:0042995, GO:0044464, GO:0005623
GO:0045892 [BP]negative regulation of transcription, DNA-dependentprobableGO:0009892, GO:0080090, GO:0009890, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0010629, GO:0050789, GO:0010605, GO:0019222, GO:2000112, GO:2000113, GO:0060255, GO:0065007, GO:0048519, GO:0010468, GO:0045934, GO:0019219, GO:0009889, GO:0050794, GO:0008150, GO:0051171, GO:0051172, GO:2001141, GO:0051253, GO:0051252, GO:0006355, GO:0010556, GO:0010558, GO:0048523
GO:0031234 [CC]extrinsic to internal side of plasma membraneprobableGO:0019897, GO:0016020, GO:0044464, GO:0009898, GO:0005622, GO:0005575, GO:0071944, GO:0005623, GO:0005886, GO:0044424, GO:0044425, GO:0019898, GO:0044459
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0007154 [BP]cell communicationprobableGO:0008150, GO:0009987, GO:0044763, GO:0044699

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3HPC, chain X
Confidence level:very confident
Coverage over the Query: 24-177
View the alignment between query and template
View the model in PyMOL
Template: 3DYT, chain A
Confidence level:very confident
Coverage over the Query: 30-97,135-302
View the alignment between query and template
View the model in PyMOL