Psyllid ID: psy17232

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MMEGLVEESLNDDQLVSGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVWRTTRMQTGIWNAPELKTRMSM
cccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccccccEEEEEEEccHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccHHHHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccHHHHccc
cccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEccccHccccccEEEEcHHHHHHHHHHHHHccccccEEEccccccccccccHHHHEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccHHHHHccccccccccccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHHHHHHHHHHccccEccccEEEEEccccHHHHHHHHHHHccHHHcccccc
MMEGLVEeslnddqlvsgkksarsenidlndnvLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFeeneayagyiippapprpdfdssREKLQKLgegegtmtKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRlaqhpvfrldHQFHVFLQYNqdlsvrskNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERArtknkdvhamppnvscigdydvwrttrmqtgiwnapelktrmsm
mmeglveeslnddqlvsgkksarsenidlndnvLIVDIsdalsekekvkftvhtkkkevyFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKlgegegtmtkEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKeattradrmtfKRKDAAKRLLYRRLRCLADYENANRnlerartknkdvhamppnvscigdydVWRTTRMqtgiwnapelktrmsm
MMEGLVEESLNDDQLVSGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIppapprpDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKdhndffenennflheyhnhlKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVWRTTRMQTGIWNAPELKTRMSM
***************************DLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYI**********************************MKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENAN*************HAMPPNVSCIGDYDVWRTTRMQTGIWNA*********
*********************************LIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFD********************FIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQ************************************NDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVWRTTRMQTGIWNAPELKT*M**
**********************RSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVWRTTRMQTGIWNAPELKTRMSM
******************************DNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKL****GTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVWRTTRMQTGIWNAPELK*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMEGLVEESLNDDQLVSGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCxxxxxxxxxxxxxxxxxxxxxxxxPPNVSCIGDYDVWRTTRMQTGIWNAPELKTRMSM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
Q5R613406 Sorting nexin-6 OS=Pongo yes N/A 0.769 0.593 0.642 4e-83
Q9UNH7406 Sorting nexin-6 OS=Homo s yes N/A 0.769 0.593 0.642 4e-83
Q6P8X1406 Sorting nexin-6 OS=Mus mu yes N/A 0.769 0.593 0.638 9e-83
Q86XE0 403 Sorting nexin-32 OS=Homo no N/A 0.725 0.563 0.577 2e-73
Q80ZJ7 404 Sorting nexin-32 OS=Mus m no N/A 0.712 0.551 0.575 2e-72
Q9D8U8404 Sorting nexin-5 OS=Mus mu no N/A 0.709 0.549 0.607 1e-71
B1H267404 Sorting nexin-5 OS=Rattus no N/A 0.709 0.549 0.607 2e-71
Q3ZBM5404 Sorting nexin-5 OS=Bos ta no N/A 0.709 0.549 0.607 5e-71
Q9Y5X3404 Sorting nexin-5 OS=Homo s no N/A 0.709 0.549 0.602 6e-71
Q9FG38 402 Sorting nexin 1 OS=Arabid yes N/A 0.492 0.383 0.270 7e-09
>sp|Q5R613|SNX6_PONAB Sorting nexin-6 OS=Pongo abelii GN=SNX6 PE=2 SV=1 Back     alignment and function desciption
 Score =  308 bits (788), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 158/246 (64%), Positives = 184/246 (74%), Gaps = 5/246 (2%)

Query: 1   MMEGLVEESLNDDQLVSGKKSARSENIDL-NDNVLIVDISDALSEKEKVKFTVHTKKKEV 59
           MMEGL +     D L    +  ++ N+DL +D  L VDISDALSE++KVKFTVHTK    
Sbjct: 1   MMEGLDD---GPDFLSEEDRGLKAINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLP 57

Query: 60  YFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTM 119
            F      VVRQHEEF+WLHD F ENE YAGYIIPPAPPRPDFD+SREKLQKLGEGEG+M
Sbjct: 58  NFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSM 117

Query: 120 TKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRS 179
           TKEEF KMKQELEAEYLA FKKTVAMHE+FL R+A HP+ R D  FHVFL+YNQDLSVR 
Sbjct: 118 TKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRG 177

Query: 180 KNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTF 239
           KNK E LE F  +  K+ D V++S  VKD +DFFE+E  FL EYHN +K+A+ ++DRMT 
Sbjct: 178 KNKKEKLEDFFKNMVKSADGVIVS-GVKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 236

Query: 240 KRKDAA 245
             K AA
Sbjct: 237 SHKSAA 242
May be involved in several stages of intracellular trafficking. Plays a role in retrograde protein transport from endosomes to the trans-Golgi network. May function as link between transport vesicles and dynactin. Negatively regulates retrograde transport of BACE1 from the cell surface to the trans-Golgi network. Promotes lysosomal degradation of CDKN1B. May contribute to transcription regulation.
Pongo abelii (taxid: 9601)
>sp|Q9UNH7|SNX6_HUMAN Sorting nexin-6 OS=Homo sapiens GN=SNX6 PE=1 SV=1 Back     alignment and function description
>sp|Q6P8X1|SNX6_MOUSE Sorting nexin-6 OS=Mus musculus GN=Snx6 PE=1 SV=2 Back     alignment and function description
>sp|Q86XE0|SNX32_HUMAN Sorting nexin-32 OS=Homo sapiens GN=SNX32 PE=2 SV=1 Back     alignment and function description
>sp|Q80ZJ7|SNX32_MOUSE Sorting nexin-32 OS=Mus musculus GN=Snx32 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8U8|SNX5_MOUSE Sorting nexin-5 OS=Mus musculus GN=Snx5 PE=1 SV=1 Back     alignment and function description
>sp|B1H267|SNX5_RAT Sorting nexin-5 OS=Rattus norvegicus GN=Snx5 PE=1 SV=1 Back     alignment and function description
>sp|Q3ZBM5|SNX5_BOVIN Sorting nexin-5 OS=Bos taurus GN=SNX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y5X3|SNX5_HUMAN Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FG38|SNX1_ARATH Sorting nexin 1 OS=Arabidopsis thaliana GN=SNX1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
195577510411 GD22430 [Drosophila simulans] gi|1941906 0.798 0.608 0.637 2e-94
350412372404 PREDICTED: sorting nexin-6-like isoform 0.859 0.665 0.649 4e-91
307207582408 Sorting nexin-6 [Harpegnathos saltator] 0.734 0.563 0.734 4e-91
340709370407 PREDICTED: LOW QUALITY PROTEIN: sorting 0.859 0.660 0.649 5e-91
380023462407 PREDICTED: LOW QUALITY PROTEIN: sorting 0.773 0.594 0.692 7e-91
328792712404 PREDICTED: sorting nexin-6-like [Apis me 0.773 0.599 0.692 8e-91
383856589408 PREDICTED: sorting nexin-6-like [Megachi 0.821 0.629 0.677 9e-91
345494410 414 PREDICTED: sorting nexin-6-like [Nasonia 0.782 0.591 0.677 3e-90
350412369408 PREDICTED: sorting nexin-6-like isoform 0.821 0.629 0.673 4e-90
322785409408 hypothetical protein SINV_10850 [Solenop 0.734 0.563 0.726 2e-89
>gi|195577510|ref|XP_002078613.1| GD22430 [Drosophila simulans] gi|194190622|gb|EDX04198.1| GD22430 [Drosophila simulans] Back     alignment and taxonomy information
 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/276 (63%), Positives = 200/276 (72%), Gaps = 26/276 (9%)

Query: 29  LNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAY 88
           L +N L V+ISDALSEKEKVKFTVHT+     F  +   VVRQHEEFVWLHDR EEN+ Y
Sbjct: 69  LGENALHVEISDALSEKEKVKFTVHTRTTLPGFSKKDNNVVRQHEEFVWLHDRIEENDDY 128

Query: 89  AGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEM 148
           AGYIIPP PPRPDFD+SREKLQ+LGEGEG MTKEEF KMK ELEAEYLATFKKTVAMHE+
Sbjct: 129 AGYIIPPCPPRPDFDASREKLQRLGEGEGNMTKEEFKKMKSELEAEYLATFKKTVAMHEV 188

Query: 149 FLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKD 208
           FL RLA HPVFR+D    VFL+Y+QDL  + + KM +  GF+ S  KTTD++LLS TV+D
Sbjct: 189 FLRRLASHPVFRVDQHLKVFLEYDQDLCAKPRKKMAIFGGFVKSLGKTTDEILLSATVRD 248

Query: 209 HNDFFENENNFLHEYHNHLKEATTRADRMTFKRK-------------------------- 242
            NDFFENE  FL EYH HL+EA  R ++MT + K                          
Sbjct: 249 VNDFFENELQFLTEYHGHLREAALRTEKMTQRHKDNLETRVASDQDLKLGDTLRYYQRDS 308

Query: 243 DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHA 278
           DAAK LL RRLRCLA YE ANRNLE+AR+KNKDVHA
Sbjct: 309 DAAKALLIRRLRCLAAYEAANRNLEKARSKNKDVHA 344

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350412372|ref|XP_003489623.1| PREDICTED: sorting nexin-6-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|307207582|gb|EFN85247.1| Sorting nexin-6 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340709370|ref|XP_003393283.1| PREDICTED: LOW QUALITY PROTEIN: sorting nexin-6-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380023462|ref|XP_003695541.1| PREDICTED: LOW QUALITY PROTEIN: sorting nexin-6-like [Apis florea] Back     alignment and taxonomy information
>gi|328792712|ref|XP_001123160.2| PREDICTED: sorting nexin-6-like [Apis mellifera] Back     alignment and taxonomy information
>gi|383856589|ref|XP_003703790.1| PREDICTED: sorting nexin-6-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345494410|ref|XP_001603083.2| PREDICTED: sorting nexin-6-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350412369|ref|XP_003489622.1| PREDICTED: sorting nexin-6-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|322785409|gb|EFZ12082.1| hypothetical protein SINV_10850 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
RGD|1304647406 Snx6 "sorting nexin 6" [Rattus 0.769 0.593 0.569 2e-73
UNIPROTKB|F1PFD0414 SNX6 "Uncharacterized protein" 0.769 0.582 0.565 4.1e-73
UNIPROTKB|Q9UNH7406 SNX6 "Sorting nexin-6" [Homo s 0.769 0.593 0.565 4.1e-73
UNIPROTKB|Q5R613406 SNX6 "Sorting nexin-6" [Pongo 0.769 0.593 0.565 4.1e-73
MGI|MGI:1919433406 Snx6 "sorting nexin 6" [Mus mu 0.769 0.593 0.560 8.6e-73
ZFIN|ZDB-GENE-050913-152407 snx6 "sorting nexin 6" [Danio 0.766 0.589 0.561 2.3e-72
UNIPROTKB|F1MHJ5388 SNX6 "Uncharacterized protein" 0.699 0.564 0.597 1.2e-71
UNIPROTKB|J9P3X9402 SNX32 "Uncharacterized protein 0.722 0.562 0.517 2.3e-66
WB|WBGene00013354478 snx-6 [Caenorhabditis elegans 0.741 0.485 0.504 3.7e-66
UNIPROTKB|D9PTP5478 snx-6 "Protein SNX-6, isoform 0.741 0.485 0.504 3.7e-66
RGD|1304647 Snx6 "sorting nexin 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 639 (230.0 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 140/246 (56%), Positives = 162/246 (65%)

Query:     1 MMEGLVEESLNDDQLVSGKKSARSENIDL-NDNVLIVDISDALSEKEKVKFTVHTKKKEV 59
             MMEGL +     D L    +  +S N+DL +D  L VDISDALSE++KVKFTVHTK    
Sbjct:     1 MMEGLDD---GPDFLSEEDRGLKSINVDLQSDAALQVDISDALSERDKVKFTVHTKSSLP 57

Query:    60 YFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIXXXXXXXDFDSSREKLQKLGEGEGTM 119
              F      VVRQHEEF+WLHD F ENE YAGYII       DFD+SREKLQKLGEGEG+M
Sbjct:    58 NFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSM 117

Query:   120 TKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRS 179
             TKEEF KMKQELEAEYLA FKKTVAMHE+FL R+A HP+ R D  FHVFL+YNQDLSVR 
Sbjct:   118 TKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQDLSVRG 177

Query:   180 KNKMEMLEGFLNSFSKTTDQVLLSHTVKXXXXXXXXXXXXXXXXXXXXKEATTRADRMTF 239
             KNK E LE F  +  K+ D V++S  VK                    K+A+ ++DRMT 
Sbjct:   178 KNKKEKLEDFFKNMVKSADGVIVSG-VKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTR 236

Query:   240 KRKDAA 245
               K AA
Sbjct:   237 SHKSAA 242
GO:0005737 "cytoplasm" evidence=ISO
GO:0006886 "intracellular protein transport" evidence=ISO
GO:0007154 "cell communication" evidence=IEA
GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA;ISO
GO:0031901 "early endosome membrane" evidence=IEA;ISO
GO:0035091 "phosphatidylinositol binding" evidence=IEA
GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA;ISO
GO:0042803 "protein homodimerization activity" evidence=IEA;ISO
GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO
UNIPROTKB|F1PFD0 SNX6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UNH7 SNX6 "Sorting nexin-6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R613 SNX6 "Sorting nexin-6" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:1919433 Snx6 "sorting nexin 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050913-152 snx6 "sorting nexin 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MHJ5 SNX6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P3X9 SNX32 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
WB|WBGene00013354 snx-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|D9PTP5 snx-6 "Protein SNX-6, isoform a" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R613SNX6_PONABNo assigned EC number0.64220.76990.5935yesN/A
Q6P8X1SNX6_MOUSENo assigned EC number0.63820.76990.5935yesN/A
Q9UNH7SNX6_HUMANNo assigned EC number0.64220.76990.5935yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
cd06892141 cd06892, PX_SNX5_like, The phosphoinositide bindin 3e-75
cd07292141 cd07292, PX_SNX6, The phosphoinositide binding Pho 2e-68
cd07291141 cd07291, PX_SNX5, The phosphoinositide binding Pho 2e-63
cd07621219 cd07621, BAR_SNX5_6, The Bin/Amphiphysin/Rvs (BAR) 2e-20
cd07621219 cd07621, BAR_SNX5_6, The Bin/Amphiphysin/Rvs (BAR) 5e-17
pfam00787109 pfam00787, PX, PX domain 3e-14
cd06859114 cd06859, PX_SNX1_2_like, The phosphoinositide bind 2e-13
cd07663218 cd07663, BAR_SNX5, The Bin/Amphiphysin/Rvs (BAR) d 1e-09
cd07662218 cd07662, BAR_SNX6, The Bin/Amphiphysin/Rvs (BAR) d 4e-08
cd07662218 cd07662, BAR_SNX6, The Bin/Amphiphysin/Rvs (BAR) d 3e-07
cd06865120 cd06865, PX_SNX_like, The phosphoinositide binding 3e-07
cd06093106 cd06093, PX_domain, The Phox Homology domain, a ph 3e-07
cd07663218 cd07663, BAR_SNX5, The Bin/Amphiphysin/Rvs (BAR) d 5e-07
cd06860116 cd06860, PX_SNX7_30_like, The phosphoinositide bin 2e-06
cd06861112 cd06861, PX_Vps5p, The phosphoinositide binding Ph 8e-06
cd07284116 cd07284, PX_SNX7, The phosphoinositide binding Pho 7e-05
cd07282124 cd07282, PX_SNX2, The phosphoinositide binding Pho 6e-04
cd07281124 cd07281, PX_SNX1, The phosphoinositide binding Pho 0.002
smart00312105 smart00312, PX, PhoX homologous domain, present in 0.003
cd06898113 cd06898, PX_SNX10, The phosphoinositide binding Ph 0.003
cd06862125 cd06862, PX_SNX9_18_like, The phosphoinositide bin 0.004
>gnl|CDD|132802 cd06892, PX_SNX5_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 Back     alignment and domain information 
 Score =  226 bits (579), Expect = 3e-75
 Identities = 104/139 (74%), Positives = 111/139 (79%)

Query: 34  LIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYII 93
           L VDISDALSE++KVKFTVHTK     F      V RQHEEFVWLHD   ENE YAG II
Sbjct: 3   LQVDISDALSERDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLII 62

Query: 94  PPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRL 153
           PPAPP+PDFD+SREKLQKLGEGEG+MTKEEF KMKQELEAEYLA FKKTVAMHE+FL RL
Sbjct: 63  PPAPPKPDFDASREKLQKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRL 122

Query: 154 AQHPVFRLDHQFHVFLQYN 172
           A HPV R D  F VFL+Y 
Sbjct: 123 ASHPVLRNDANFRVFLEYE 141

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of some SNXs. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. Length = 141
>gnl|CDD|132825 cd07292, PX_SNX6, The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 Back     alignment and domain information
>gnl|CDD|132824 cd07291, PX_SNX5, The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 Back     alignment and domain information
>gnl|CDD|153305 cd07621, BAR_SNX5_6, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>gnl|CDD|153305 cd07621, BAR_SNX5_6, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>gnl|CDD|216119 pfam00787, PX, PX domain Back     alignment and domain information
>gnl|CDD|132769 cd06859, PX_SNX1_2_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>gnl|CDD|153347 cd07663, BAR_SNX5, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 Back     alignment and domain information
>gnl|CDD|153346 cd07662, BAR_SNX6, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 Back     alignment and domain information
>gnl|CDD|153346 cd07662, BAR_SNX6, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 Back     alignment and domain information
>gnl|CDD|132775 cd06865, PX_SNX_like, The phosphoinositide binding Phox Homology domain of SNX-like proteins Back     alignment and domain information
>gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module Back     alignment and domain information
>gnl|CDD|153347 cd07663, BAR_SNX5, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 Back     alignment and domain information
>gnl|CDD|132770 cd06860, PX_SNX7_30_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 Back     alignment and domain information
>gnl|CDD|132771 cd06861, PX_Vps5p, The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p Back     alignment and domain information
>gnl|CDD|132817 cd07284, PX_SNX7, The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 Back     alignment and domain information
>gnl|CDD|132815 cd07282, PX_SNX2, The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 Back     alignment and domain information
>gnl|CDD|132814 cd07281, PX_SNX1, The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 Back     alignment and domain information
>gnl|CDD|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox Back     alignment and domain information
>gnl|CDD|132808 cd06898, PX_SNX10, The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 Back     alignment and domain information
>gnl|CDD|132772 cd06862, PX_SNX9_18_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
KOG1660|consensus399 100.0
cd07292141 PX_SNX6 The phosphoinositide binding Phox Homology 100.0
cd07291141 PX_SNX5 The phosphoinositide binding Phox Homology 100.0
cd06892141 PX_SNX5_like The phosphoinositide binding Phox Hom 100.0
cd07284116 PX_SNX7 The phosphoinositide binding Phox Homology 100.0
cd07283116 PX_SNX30 The phosphoinositide binding Phox Homolog 100.0
cd07282124 PX_SNX2 The phosphoinositide binding Phox Homology 99.98
cd06891140 PX_Vps17p The phosphoinositide binding Phox Homolo 99.97
cd07293123 PX_SNX3 The phosphoinositide binding Phox Homology 99.97
cd06860116 PX_SNX7_30_like The phosphoinositide binding Phox 99.97
cd07294132 PX_SNX12 The phosphoinositide binding Phox Homolog 99.97
cd07286127 PX_SNX18 The phosphoinositide binding Phox Homolog 99.97
cd06861112 PX_Vps5p The phosphoinositide binding Phox Homolog 99.97
cd06894123 PX_SNX3_like The phosphoinositide binding Phox Hom 99.97
cd07281124 PX_SNX1 The phosphoinositide binding Phox Homology 99.97
cd07285126 PX_SNX9 The phosphoinositide binding Phox Homology 99.96
cd06863118 PX_Atg24p The phosphoinositide binding Phox Homolo 99.96
cd07295116 PX_Grd19 The phosphoinositide binding Phox Homolog 99.96
cd06865120 PX_SNX_like The phosphoinositide binding Phox Homo 99.96
KOG2273|consensus503 99.95
cd06864129 PX_SNX4 The phosphoinositide binding Phox Homology 99.95
cd06898113 PX_SNX10 The phosphoinositide binding Phox Homolog 99.94
cd06859114 PX_SNX1_2_like The phosphoinositide binding Phox H 99.94
cd07288118 PX_SNX15 The phosphoinositide binding Phox Homolog 99.93
cd06862125 PX_SNX9_18_like The phosphoinositide binding Phox 99.93
cd06868120 PX_HS1BP3 The phosphoinositide binding Phox Homolo 99.93
cd07287118 PX_RPK118_like The phosphoinositide binding Phox H 99.92
cd06867112 PX_SNX41_42 The phosphoinositide binding Phox Homo 99.92
KOG2527|consensus144 99.91
cd07301112 PX_SNX21 The phosphoinositide binding Phox Homolog 99.91
cd07280120 PX_YPT35 The phosphoinositide binding Phox Homolog 99.9
cd06866105 PX_SNX8_Mvp1p_like The phosphoinositide binding Ph 99.9
cd06881117 PX_SNX15_like The phosphoinositide binding Phox Ho 99.9
cd06893132 PX_SNX19 The phosphoinositide binding Phox Homolog 99.89
cd07279112 PX_SNX20_21_like The phosphoinositide binding Phox 99.87
cd07300114 PX_SNX20 The phosphoinositide binding Phox Homolog 99.86
cd07276110 PX_SNX16 The phosphoinositide binding Phox Homolog 99.86
cd06877119 PX_SNX14 The phosphoinositide binding Phox Homolog 99.86
KOG2528|consensus490 99.86
cd06872107 PX_SNX19_like_plant The phosphoinositide binding P 99.84
cd06886106 PX_SNX27 The phosphoinositide binding Phox Homolog 99.84
cd06873120 PX_SNX13 The phosphoinositide binding Phox Homolog 99.84
cd06897108 PX_SNARE The phosphoinositide binding Phox Homolog 99.83
cd06870109 PX_CISK The phosphoinositide binding Phox Homology 99.82
cd06879138 PX_UP1_plant The phosphoinositide binding Phox Hom 99.81
cd06871120 PX_MONaKA The phosphoinositide binding Phox Homolo 99.81
cd06876133 PX_MDM1p The phosphoinositide binding Phox Homolog 99.8
cd07662218 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.8
cd06869119 PX_UP2_fungi The phosphoinositide binding Phox Hom 99.79
cd06875116 PX_IRAS The phosphoinositide binding Phox Homology 99.78
cd06885104 PX_SNX17_31 The phosphoinositide binding Phox Homo 99.78
cd06882123 PX_p40phox The phosphoinositide binding Phox Homol 99.77
cd07666243 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.76
cd07663218 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.76
cd06093106 PX_domain The Phox Homology domain, a phosphoinosi 99.75
COG5391 524 Phox homology (PX) domain protein [Intracellular t 99.74
cd07621219 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of 99.74
smart00312105 PX PhoX homologous domain, present in p47phox and 99.73
cd06878127 PX_SNX25 The phosphoinositide binding Phox Homolog 99.72
PF00787113 PX: PX domain; InterPro: IPR001683 The PX (phox) d 99.72
cd07277118 PX_RUN The phosphoinositide binding Phox Homology 99.71
cd06880110 PX_SNX22 The phosphoinositide binding Phox Homolog 99.7
cd07667240 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of 99.65
cd06883109 PX_PI3K_C2 The phosphoinositide binding Phox Homol 99.64
cd06874127 PX_KIF16B_SNX23 The phosphoinositide binding Phox 99.58
cd06884111 PX_PI3K_C2_68D The phosphoinositide binding Phox H 99.52
cd06890112 PX_Bem1p The phosphoinositide binding Phox Homolog 99.52
cd06895140 PX_PLD The phosphoinositide binding Phox Homology 99.5
cd06887118 PX_p47phox The phosphoinositide binding Phox Homol 99.43
cd07630198 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain 99.39
cd06888119 PX_FISH The phosphoinositide binding Phox Homology 99.35
cd07664234 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.29
cd07624200 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o 99.22
cd07623224 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of 99.19
PF09325236 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp 99.19
cd07296135 PX_PLD1 The phosphoinositide binding Phox Homology 99.17
cd07290109 PX_PI3K_C2_beta The phosphoinositide binding Phox 99.12
cd07665234 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S 99.09
cd07289109 PX_PI3K_C2_alpha The phosphoinositide binding Phox 99.08
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 99.04
cd07622201 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S 98.86
cd07628185 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of 98.73
cd06889121 PX_NoxO1 The phosphoinositide binding Phox Homolog 98.64
cd07297130 PX_PLD2 The phosphoinositide binding Phox Homology 98.57
cd07596218 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So 98.33
cd06896101 PX_PI3K_C2_gamma The phosphoinositide binding Phox 98.27
KOG1259|consensus 490 98.24
KOG3784|consensus 407 98.15
cd07629187 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of 97.96
cd07625230 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of 97.23
cd07298115 PX_RICS The phosphoinositide binding Phox Homology 97.12
KOG2101|consensus362 96.97
cd07278114 PX_RICS_like The phosphoinositide binding Phox Hom 96.33
cd07299113 PX_TCGAP The phosphoinositide binding Phox Homolog 96.02
KOG4773|consensus 386 95.66
cd07598 211 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of 94.75
cd07591224 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o 93.33
cd07612211 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B 92.95
cd07588211 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma 92.87
cd07590225 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B 91.89
cd07599216 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o 91.63
PF03114229 BAR: BAR domain; InterPro: IPR004148 Endocytosis a 90.98
cd07611211 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) 90.88
cd07626199 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain 86.82
KOG0905|consensus1639 86.72
cd07589195 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of 86.63
KOG3771|consensus 460 84.41
cd07597 246 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S 82.09
smart00721239 BAR BAR domain. 80.09
>KOG1660|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-58  Score=434.51  Aligned_cols=281  Identities=62%  Similarity=0.931  Sum_probs=269.3

Q ss_pred             CCCCCCCCcccCC-CCCceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCC
Q psy17232         17 SGKKSARSENIDL-NDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPP   95 (313)
Q Consensus        17 ~~~~~~~~~~~~l-~~~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPP   95 (313)
                      ..+......+|++ ++.++.|.|+|...+.+.|.|+|+|+|++|.|. ++++|.|.+.+|+|||..+..+++|.|+||||
T Consensus         8 ~~~~~~~~~~V~~~g~~s~~~eis~a~se~~kvK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp   86 (399)
T KOG1660|consen    8 QDHSSEVKAGVPTGGLFSLLVEISDALSEIGKVKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPP   86 (399)
T ss_pred             hhcccccccCCCcCCccceeeeechhhhhcccceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCC
Confidence            3455667778888 889999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             CCCCCCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccccccc
Q psy17232         96 APPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDL  175 (313)
Q Consensus        96 lP~K~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~el  175 (313)
                      .|+++.|.++++|+|++|+|.+.||+|||.+|++.++++||+.++|..+|+|.||+||+.||+|+.|..|++||++++++
T Consensus        87 ~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~qdL  166 (399)
T KOG1660|consen   87 APPRPDFDASREKLQKLGEGEGWMTKEEFLKMKQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYDQDL  166 (399)
T ss_pred             CCCCCCCCCChHHHHHhcCCcccccHHHHHHHHHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhchhhhhhhhhHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q psy17232        176 SVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK-------------  242 (313)
Q Consensus       176 ~~~~k~~~~~~~~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k-------------  242 (313)
                      ++++||+++..||||+++.++++.+..+.+++++|+||+..+.|+..|+.++++.+..+++|+..|+             
T Consensus       167 svr~KNkkE~~~~f~k~~~kSAdeillSg~lkdVddFfe~ek~fl~ey~~~ikdas~kadKmt~~hK~~~ddy~~i~~~~  246 (399)
T KOG1660|consen  167 SVRGKNKKESFGGFLKRFVKSADEILLSGKLKDVDDFFETEKNFLKEYHFRIKDASLKADKLTRAHKSVGDDYDQIGNRL  246 (399)
T ss_pred             cccccchhhhhhHHHHHHhhhhhheeeecceeehhHHHHhhhHHHHHHhhHHhhhccchHHhhhhcccccccHHHHHHHH
Confidence            9999999999999999999999999886679999999999999999999999999999999999988             


Q ss_pred             ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17232        243 ---------------------------------------------------DAAKRLLYRRLRCLADYENANRNLERART  271 (313)
Q Consensus       243 ---------------------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~  271 (313)
                                                                         .++|++|++|.+|+++||+||++|+|||+
T Consensus       247 ~~lg~ed~~~v~~~~l~~~e~f~~~~k~e~Rvs~dedlkL~d~l~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~  326 (399)
T KOG1660|consen  247 NRLGEEDAANVKKFQLKEAEYFEEESKVERRVSSDEDLKLGDTLRYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARA  326 (399)
T ss_pred             HHhhhhhhcccceeeecchhHHHHHHhHhhhhchHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence                                                               89999999999999999999999999999


Q ss_pred             chhhhhcCCchhh-hhhhHHHHHHHHhh
Q psy17232        272 KNKDVHAMPPNVS-CIGDYDVWRTTRMQ  298 (313)
Q Consensus       272 ~~k~v~~~e~~~~-~~~~~e~~~~~~~~  298 (313)
                      ++|||.++|+.++ ||++||.+....++
T Consensus       327 knkdv~~ae~~q~e~c~kfe~~s~~~k~  354 (399)
T KOG1660|consen  327 KNKDVHAAEAAQQEACQKFESISESAKE  354 (399)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 99999999765554

>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 Back     alignment and domain information
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 Back     alignment and domain information
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 Back     alignment and domain information
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 Back     alignment and domain information
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 Back     alignment and domain information
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p Back     alignment and domain information
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 Back     alignment and domain information
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 Back     alignment and domain information
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 Back     alignment and domain information
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 Back     alignment and domain information
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p Back     alignment and domain information
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins Back     alignment and domain information
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 Back     alignment and domain information
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 Back     alignment and domain information
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein Back     alignment and domain information
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19 Back     alignment and domain information
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins Back     alignment and domain information
>KOG2273|consensus Back     alignment and domain information
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 Back     alignment and domain information
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 Back     alignment and domain information
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15 Back     alignment and domain information
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 Back     alignment and domain information
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3 Back     alignment and domain information
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins Back     alignment and domain information
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 Back     alignment and domain information
>KOG2527|consensus Back     alignment and domain information
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21 Back     alignment and domain information
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 Back     alignment and domain information
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p Back     alignment and domain information
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins Back     alignment and domain information
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 Back     alignment and domain information
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 Back     alignment and domain information
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 Back     alignment and domain information
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 Back     alignment and domain information
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 Back     alignment and domain information
>KOG2528|consensus Back     alignment and domain information
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins Back     alignment and domain information
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27 Back     alignment and domain information
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 Back     alignment and domain information
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi Back     alignment and domain information
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase Back     alignment and domain information
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins Back     alignment and domain information
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase Back     alignment and domain information
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p Back     alignment and domain information
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 Back     alignment and domain information
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins Back     alignment and domain information
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected Back     alignment and domain information
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 Back     alignment and domain information
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase Back     alignment and domain information
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 Back     alignment and domain information
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 Back     alignment and domain information
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module Back     alignment and domain information
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] Back     alignment and domain information
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox Back     alignment and domain information
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25 Back     alignment and domain information
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ] Back     alignment and domain information
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains Back     alignment and domain information
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 Back     alignment and domain information
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 Back     alignment and domain information
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 Back     alignment and domain information
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein Back     alignment and domain information
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p Back     alignment and domain information
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D Back     alignment and domain information
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase Back     alignment and domain information
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins Back     alignment and domain information
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein Back     alignment and domain information
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 Back     alignment and domain information
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 Back     alignment and domain information
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking Back     alignment and domain information
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1 Back     alignment and domain information
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 Back     alignment and domain information
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 Back     alignment and domain information
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p Back     alignment and domain information
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1 Back     alignment and domain information
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2 Back     alignment and domain information
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins Back     alignment and domain information
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>KOG1259|consensus Back     alignment and domain information
>KOG3784|consensus Back     alignment and domain information
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p Back     alignment and domain information
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p Back     alignment and domain information
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS Back     alignment and domain information
>KOG2101|consensus Back     alignment and domain information
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins Back     alignment and domain information
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein Back     alignment and domain information
>KOG4773|consensus Back     alignment and domain information
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) Back     alignment and domain information
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins Back     alignment and domain information
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2 Back     alignment and domain information
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins Back     alignment and domain information
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 Back     alignment and domain information
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins Back     alignment and domain information
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment Back     alignment and domain information
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II Back     alignment and domain information
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins Back     alignment and domain information
>KOG0905|consensus Back     alignment and domain information
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein Back     alignment and domain information
>KOG3771|consensus Back     alignment and domain information
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8 Back     alignment and domain information
>smart00721 BAR BAR domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
3hpc_X161 Crystal Structure Of Snx5-Px Domain In P21 Space Gr 3e-52
3hpb_A161 Crystal Structure Of Snx5-Px Domain In P212121 Spac 2e-50
>pdb|3HPC|X Chain X, Crystal Structure Of Snx5-Px Domain In P21 Space Group Length = 161 Back     alignment and structure 
Iteration: 1

 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/159 (63%), Positives = 114/159 (71%), Gaps = 1/159 (0%)
Query: 24  SENIDLN-DNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRF 82
           S ++DLN D  L +DI DALSE++KVKFTVHTK     F      V RQHE+FVWLHD  
Sbjct: 1   SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTL 60
Query: 83  EENEAYAGYIIXXXXXXXDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKT 142
            E   YAG II       DFD  REK+QKLGEGEG+MTKEEF KMKQELEAEYLA FKKT
Sbjct: 61  TETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKT 120
Query: 143 VAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKN 181
           V+ HE+FL RL+ HPV   D  FHVFL+Y+QDLSVR KN
Sbjct: 121 VSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKN 159
>pdb|3HPB|A Chain A, Crystal Structure Of Snx5-Px Domain In P212121 Space Group Length = 161 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
3hpc_X161 SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph 5e-45
2i4k_A128 Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al 4e-27
2csk_A146 Sorting nexin 12; SNX12, PX domain, structural gen 2e-25
4akv_A386 Sorting nexin-33; transport protein, organelle bio 9e-20
3iq2_A138 Sorting nexin-7; SNX7, PHOX, protein signalling, S 3e-19
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 1e-18
1ocs_A162 Sorting nexin GRD19; sorting protein, PX-domain, y 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
3lui_A115 Sorting nexin-17, SNX17; PX domain, endosome, phos 6e-07
1xte_A154 Serine/threonine-protein kinase SGK3; CISK, PX dom 3e-06
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A Length = 161 Back     alignment and structure
 Score =  149 bits (378), Expect = 5e-45
 Identities = 106/160 (66%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 24  SENIDLN-DNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRF 82
           S ++DLN D  L +DI DALSE++KVKFTVHTK     F      V RQHE+FVWLHD  
Sbjct: 1   SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTL 60

Query: 83  EENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKT 142
            E   YAG IIPPAP +PDFD  REK+QKLGEGEG+MTKEEF KMKQELEAEYLA FKKT
Sbjct: 61  TETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKT 120

Query: 143 VAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNK 182
           V+ HE+FL RL+ HPV   D  FHVFL+Y+QDLSVR KN 
Sbjct: 121 VSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNT 160
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386 Back     alignment and structure
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138 Back     alignment and structure
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366 Back     alignment and structure
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115 Back     alignment and structure
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
3hpc_X161 SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph 100.0
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 100.0
4akv_A386 Sorting nexin-33; transport protein, organelle bio 100.0
3iq2_A138 Sorting nexin-7; SNX7, PHOX, protein signalling, S 99.96
1ocs_A162 Sorting nexin GRD19; sorting protein, PX-domain, y 99.95
2csk_A146 Sorting nexin 12; SNX12, PX domain, structural gen 99.95
2i4k_A128 Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al 99.95
3lui_A115 Sorting nexin-17, SNX17; PX domain, endosome, phos 99.9
1kmd_A117 VAM7P, vacuolar morphogenesis protein VAM7; PX dom 99.89
1xte_A154 Serine/threonine-protein kinase SGK3; CISK, PX dom 99.87
3p0c_A130 Nischarin; structural genomics, structural genomic 99.85
2v14_A134 Kinesin-like motor protein C20ORF23; plus-END kine 99.84
1h6h_A143 Neutrophil cytosol factor 4; PX domain; HET: PIB; 99.83
4az9_A129 Sorting nexin-24; protein transport; 1.75A {Homo s 99.82
2ar5_A121 Phosphoinositide 3-kinase; PX domain, transferase; 99.8
2ett_A128 Sorting nexin-22; PX domain, BC019655, SNX22_human 99.79
1kq6_A141 NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha 99.77
2iwl_X140 Phosphatidylinositol-4-phosphate 3-kinase C2 domai 99.74
2v6v_A156 BUD emergence protein 1; homotypic fusion, regulat 99.67
2l73_A149 NADPH oxidase organizer 1; cell membrane, PX domai 99.53
2dyb_A341 Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid 99.38
2wwe_A127 Phosphoinositide-3-kinase, class 2, gamma polypept 99.28
2fic_A251 Bridging integrator 1; BAR domain, homodimer, coil 97.08
1uru_A244 Amphiphysin; endocytosis, coiled-coil, membrane cu 95.38
4avm_A237 Bridging integrator 2; protein binding, plasma mem 92.24
4a3a_A243 Amphiphysin; structural genomics, invagination, kn 90.42
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A Back     alignment and structure
Probab=100.00  E-value=4.1e-48  Score=336.05  Aligned_cols=159  Identities=66%  Similarity=1.020  Sum_probs=149.2

Q ss_pred             CcccCC-CCCceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCC
Q psy17232         24 SENIDL-NDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDF  102 (313)
Q Consensus        24 ~~~~~l-~~~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~  102 (313)
                      +++||| +++.|+|.|+||.++|+||+|+|+|+|++|.|...+++|+||||||+|||++|..++.|||+||||||+|+.+
T Consensus         1 ~~~~~~~~~~~l~i~V~dp~~~~~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~   80 (161)
T 3hpc_X            1 SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDF   80 (161)
T ss_dssp             CCCCCCCCSCSEEEEEEEEEEETTEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCC
T ss_pred             CccccCCCCCeEEEEECCCeEecCCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccc
Confidence            578999 9999999999999999999999999999999999999999999999999999998666999999999999999


Q ss_pred             cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccccccchhchhh
Q psy17232        103 DSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNK  182 (313)
Q Consensus       103 ~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~el~~~~k~~  182 (313)
                      ++++.|++++|.++++|++++|.+|+++|+++|||.|||||++||+||++|++||+|++|+.|+.||+.++|+++++||+
T Consensus        81 ~~~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~dl~~~~k~~  160 (161)
T 3hpc_X           81 DGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNT  160 (161)
T ss_dssp             HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSCSCC-----
T ss_pred             cchhhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCccchhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888875
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Back     alignment and structure
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Back     alignment and structure
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Back     alignment and structure
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Back     alignment and structure
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Back     alignment and structure
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Back     alignment and structure
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Back     alignment and structure
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Back     alignment and structure
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Back     alignment and structure
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Back     alignment and structure
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Back     alignment and structure
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens} Back     alignment and structure
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Back     alignment and structure
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Back     alignment and structure
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Back     alignment and structure
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Back     alignment and structure
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Back     alignment and structure
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Back     alignment and structure
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Back     alignment and structure
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Back     alignment and structure
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Back     alignment and structure
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Back     alignment and structure
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 313
d1ocsa_132 d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast 4e-11
d1kmda_117 d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces 3e-07
d1xtea_116 d.189.1.1 (A:) Serine/threonine-protein kinase Sgk 2e-04
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Sorting nexin grd19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (138), Expect = 4e-11
 Identities = 16/152 (10%), Positives = 45/152 (29%), Gaps = 34/152 (22%)

Query: 31  DNVLIVDISDALSEKEK--------VKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRF 82
           +N L +++ +  +              + +  +     F  R   V R++ +F +     
Sbjct: 4   ENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCL 63

Query: 83  EENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKT 142
            +  +   +     P  P       +           + E   + +Q L           
Sbjct: 64  IKEISMLNHPKVMVPHLPGKILLSNR----------FSNEVIEERRQGLNT--------- 104

Query: 143 VAMHEMFLTRLAQHPVFRLDHQ-FHVFLQYNQ 173
                 ++  +A HP+ +   +    F++  +
Sbjct: 105 ------WMQSVAGHPLLQSGSKVLVRFIEAEK 130
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 Back     information, alignment and structure
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d1ocsa_132 Sorting nexin grd19 {Baker's yeast (Saccharomyces 99.93
d1kmda_117 Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T 99.84
d1xtea_116 Serine/threonine-protein kinase Sgk3, Cisk {Mouse 99.8
d1h6ha_143 p40phox NADPH oxidase {Human (Homo sapiens) [TaxId 99.75
d1kq6a_140 p47phox NADPH oxidase {Human (Homo sapiens) [TaxId 99.7
d1urua_217 Amphiphysin {Fruit fly (Drosophila melanogaster) [ 96.89
d1i4da_200 Arfaptin, Rac-binding fragment {Human (Homo sapien 96.22
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Sorting nexin grd19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1e-26  Score=192.23  Aligned_cols=114  Identities=12%  Similarity=0.247  Sum_probs=96.4

Q ss_pred             CCceEEEeecceee--------CCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhc---cCccccCCCCCCC
Q psy17232         31 DNVLIVDISDALSE--------KEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENE---AYAGYIIPPAPPR   99 (313)
Q Consensus        31 ~~~l~V~Vsdp~k~--------g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~---~~pg~iIPPlP~K   99 (313)
                      ++.+.|.|+||.++        +.|+.|.|+++|++|.|.+.++.|+||||||+|||+.|..++   .+|++++||+|+|
T Consensus         4 ~~~~~i~V~dP~~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~p~~p~~   83 (132)
T d1ocsa_           4 ENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGK   83 (132)
T ss_dssp             SCCEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTC
T ss_pred             CCeEEEEEcCCcEeecCCCCCccCeEEEEEEEEecCCCCCCceEEEEeeHHHHHHHHHHHHHhcccccCcccccCCCccc
Confidence            46799999999875        138999999999999999999999999999999999998751   2456778889988


Q ss_pred             CCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC-ccccccccccc
Q psy17232        100 PDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRL-DHQFHVFLQYN  172 (313)
Q Consensus       100 ~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~-d~~l~~FL~~~  172 (313)
                      ..+..                         .++++||+   +||.+||.||++|+.||.|+. ++.|+.||+.+
T Consensus        84 ~~~~~-------------------------~~~~~~ie---~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FLe~~  129 (132)
T d1ocsa_          84 ILLSN-------------------------RFSNEVIE---ERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE  129 (132)
T ss_dssp             CCSSC-------------------------TTSHHHHH---HHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred             ccccc-------------------------cCCHHHHH---HHHHHHHHHHHHHHcCHHHHhCCHHHHhcCCcc
Confidence            76531                         13468888   678899999999999999986 57899999886
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure