Psyllid ID: psy17633

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ
Secondary Structure (PSIPRED)
cEEEccccccccccEEEEEcccccccEEEEEEEEEccccEEEEEcccccEEEcccccccccccEEEcccccccHHHHHHccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cEEcccccEcccccEEEEEccccccEEEEEEEEEEccccEcEEEEEccEEEEEEEcccccccccEEcccccEEHHHHccccEEcccccEEccccccccc
Coil and Loop (DISEMBL)
mtglshflrmfptlrvsftglrpdqrYAVLMDivpvdnkryryayhrsswlvagkadppaplrlymhpdspftgdqLRKQVVSFEKVKLtnnemdkngq
Flexible Loop (DISEMBL)
mtglshflrmfpTLRVSftglrpdqryaVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQVVSFekvkltnnemdkngq
Low Complexity Region (SEG)
MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ
Disordered region (IsUnstruct)
*****HFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADP*APLRLYM*********************************
Disordered Region (DISOPRED)
MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQVVSFEKV************
Disordered Region (DISEMBL)
MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQVVSFEKVKLTN********
Disordered Region (DISPRO)
MT**SHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQVVSFEKVKLTNN*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q9I9K7	446	T-box transcription facto	yes	N/A	0.919	0.204	0.813	4e-41
Q8UW76	440	T-box transcription facto	yes	N/A	0.919	0.206	0.802	1e-40
Q3SA46	440	T-box transcription facto	yes	N/A	0.919	0.206	0.802	4e-40
Q8AXW8	441	T-box transcription facto	N/A	N/A	0.919	0.206	0.791	9e-40
Q9UMR3	447	T-box transcription facto	no	N/A	0.919	0.203	0.802	5e-39
Q9ES03	445	T-box transcription facto	no	N/A	0.919	0.204	0.802	5e-39
Q94890	660	T-box protein H15 OS=Dros	no	N/A	0.919	0.137	0.726	2e-36
Q9EPZ6	613	T-box transcription facto	no	N/A	0.909	0.146	0.622	1e-30
O95935	607	T-box transcription facto	no	N/A	0.909	0.148	0.622	1e-30
O70306	602	T-box transcription facto	no	N/A	0.919	0.151	0.637	3e-30

>sp|Q9I9K7|TBX20_DANRE T-box transcription factor TBX20 OS=Danio rerio GN=tbx20 PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 84/91 (92%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT+RVSF+G+ PD +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct: 127 RMFPTIRVSFSGVDPDAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 186

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QL KQ+VSFEKVKLTNNE+D++G 
Sbjct: 187 DSPFTGEQLLKQMVSFEKVKLTNNELDQHGH 217

May play a very early role in the differentiation of the cardiac precursors.
Danio rerio (taxid: 7955)

>sp|Q8UW76|TBX20_CHICK T-box transcription factor TBX20 OS=Gallus gallus GN=TBX20 PE=2 SV=1

 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 84/91 (92%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT+RVSF+G+ P+ +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct: 122 RMFPTIRVSFSGVDPEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 181

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QL KQ+VSFEKVKLTNNE+D++G 
Sbjct: 182 DSPFTGEQLMKQMVSFEKVKLTNNELDQHGH 212

Probable transcriptional regulator involved in developmental processes.

Gallus gallus (taxid: 9031)

>sp|Q3SA46|TBX20_XENTR T-box transcription factor TBX20 OS=Xenopus tropicalis GN=tbx20 PE=2 SV=1

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 83/91 (91%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT+RVSF+G+  D +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct: 122 RMFPTIRVSFSGVDADAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 181

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QL KQ+VSFEKVKLTNNE+D++G 
Sbjct: 182 DSPFTGEQLLKQMVSFEKVKLTNNELDQHGH 212

Probable transcriptional regulator involved in developmental processes.

Xenopus tropicalis (taxid: 8364)

>sp|Q8AXW8|TBX20_XENLA T-box transcription factor TBX20 OS=Xenopus laevis GN=tbx20 PE=2 SV=1

 Score =  161 bits (408), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 83/91 (91%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT+RVSF+G+  D +Y VLMDIVPVDNKRYRYAYHRS+WLVAGKADPP P RLY+HP
Sbjct: 122 RMFPTIRVSFSGVDADAKYIVLMDIVPVDNKRYRYAYHRSAWLVAGKADPPLPARLYVHP 181

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QL KQ+VSFEKVKLTNNE+D++G 
Sbjct: 182 DSPFTGEQLLKQMVSFEKVKLTNNELDQHGH 212

Probable transcriptional regulator involved in developmental processes.

Xenopus laevis (taxid: 8355)

>sp|Q9UMR3|TBX20_HUMAN T-box transcription factor TBX20 OS=Homo sapiens GN=TBX20 PE=1 SV=4

 Score =  159 bits (402), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/91 (80%), Positives = 84/91 (92%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT+RVSF+G+ P+ +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct: 128 RMFPTIRVSFSGVDPEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 187

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QL KQ+VSFEKVKLTNNE+D++G 
Sbjct: 188 DSPFTGEQLLKQMVSFEKVKLTNNELDQHGH 218

Probable transcriptional regulator involved in developmental processes.

Homo sapiens (taxid: 9606)

>sp|Q9ES03|TBX20_MOUSE T-box transcription factor TBX20 OS=Mus musculus GN=Tbx20 PE=2 SV=3

 Score =  159 bits (402), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/91 (80%), Positives = 84/91 (92%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT+RVSF+G+ P+ +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct: 127 RMFPTIRVSFSGVDPESKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 186

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QL KQ+VSFEKVKLTNNE+D++G 
Sbjct: 187 DSPFTGEQLLKQMVSFEKVKLTNNELDQHGH 217

Probable transcriptional regulator involved in developmental processes.

Mus musculus (taxid: 10090)

>sp|Q94890|H15_DROME T-box protein H15 OS=Drosophila melanogaster GN=H15 PE=2 SV=2

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 82/95 (86%), Gaps = 4/95 (4%)

Query: 9   RMFPTLRVSFTG----LRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRL 64
           RMFPT+RVSF+G    ++P  RYAVL+D+VP+D++RYRYAYHRSSWLVAGKADPP P R+
Sbjct: 305 RMFPTVRVSFSGPLRQIQPADRYAVLLDVVPLDSRRYRYAYHRSSWLVAGKADPPPPSRI 364

Query: 65  YMHPDSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           Y HPD P + + LRKQVVSFEKVKLTNNEMDK+GQ
Sbjct: 365 YAHPDCPLSPEALRKQVVSFEKVKLTNNEMDKSGQ 399

Drosophila melanogaster (taxid: 7227)

>sp|Q9EPZ6|TBX18_MOUSE T-box transcription factor TBX18 OS=Mus musculus GN=Tbx18 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 70/90 (77%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP +RV  +GL P Q+Y + MDIVPVDNKRYRY YH S W+VAG AD P P R+Y+HP
Sbjct: 173 RMFPAMRVKISGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHP 232

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
           DSP +G+   +QV+SF+K+KLTNNE+D  G
Sbjct: 233 DSPASGETWMRQVISFDKLKLTNNELDDQG 262

Probable transcriptional regulator involved in developmental processes.

Mus musculus (taxid: 10090)

>sp|O95935|TBX18_HUMAN T-box transcription factor TBX18 OS=Homo sapiens GN=TBX18 PE=2 SV=3

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 70/90 (77%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP +RV  +GL P Q+Y + MDIVPVDNKRYRY YH S W+VAG AD P P R+Y+HP
Sbjct: 167 RMFPAMRVKISGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHP 226

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
           DSP +G+   +QV+SF+K+KLTNNE+D  G
Sbjct: 227 DSPASGETWMRQVISFDKLKLTNNELDDQG 256

Probable transcriptional regulator involved in developmental processes.

Homo sapiens (taxid: 9606)

>sp|O70306|TBX15_MOUSE T-box transcription factor TBX15 OS=Mus musculus GN=Tbx15 PE=2 SV=2

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 69/91 (75%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP +RV  TGL P Q+Y + MDIVPVDNKRYRY YH S W+VAG AD P P R+Y+HP
Sbjct: 141 RMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHP 200

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DS  +GD   +QVVSF+K+KLTNNE+D  G 
Sbjct: 201 DSLASGDTWMRQVVSFDKLKLTNNELDDQGH 231

Probable transcriptional regulator involved in the development of the skeleton of the limb, vertebral column and head. Acts by controlling the number of mesenchymal precursor cells and chondrocytes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
242007804	371	T-box protein H15, putative [Pediculus h	0.909	0.242	0.966	1e-45
91082919	594	PREDICTED: similar to GA19742-PA [Tribol	0.919	0.153	0.923	3e-45
270008163	371	H15 [Tribolium castaneum]	0.919	0.245	0.923	1e-44
242007800	354	T-box protein H15, putative [Pediculus h	0.909	0.254	0.933	3e-44
254587462	151	H15 protein [Tribolium castaneum]	0.919	0.602	0.912	1e-43
270008223	443	midline [Tribolium castaneum]	0.919	0.205	0.890	2e-43
91082917	465	PREDICTED: similar to T-box transcriptio	0.919	0.195	0.890	3e-43
380025176	463	PREDICTED: uncharacterized protein LOC10	0.919	0.196	0.879	9e-43
383863843	430	PREDICTED: T-box protein H15-like [Megac	0.919	0.211	0.879	1e-42
350417453	530	PREDICTED: T-box transcription factor TB	0.919	0.171	0.879	2e-42

>gi|242007804|ref|XP_002424711.1| T-box protein H15, putative [Pediculus humanus corporis] gi|212508204|gb|EEB11973.1| T-box protein H15, putative [Pediculus humanus corporis]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/90 (96%), Positives = 89/90 (98%)

Query: 10 MFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPD 69
          MFPTLRVSFTG+RP+QRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAP RLYMHPD
Sbjct: 1  MFPTLRVSFTGIRPEQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPCRLYMHPD 60

Query: 70 SPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
          SPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ
Sbjct: 61 SPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 90

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082919|ref|XP_972670.1| PREDICTED: similar to GA19742-PA [Tribolium castaneum]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 89/91 (97%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPTLRVSFTG+RPDQRYAVL+DIVPVDNKRYRYAYHRSSWLVAGKADPPAP R+Y HP
Sbjct: 240 RMFPTLRVSFTGIRPDQRYAVLLDIVPVDNKRYRYAYHRSSWLVAGKADPPAPCRIYAHP 299

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPF+G+QLRKQVVSFEKVKLTNNEMDKNGQ
Sbjct: 300 DSPFSGEQLRKQVVSFEKVKLTNNEMDKNGQ 330

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008163|gb|EFA04611.1| H15 [Tribolium castaneum]

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 89/91 (97%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPTLRVSFTG+RPDQRYAVL+DIVPVDNKRYRYAYHRSSWLVAGKADPPAP R+Y HP
Sbjct: 17  RMFPTLRVSFTGIRPDQRYAVLLDIVPVDNKRYRYAYHRSSWLVAGKADPPAPCRIYAHP 76

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPF+G+QLRKQVVSFEKVKLTNNEMDKNGQ
Sbjct: 77  DSPFSGEQLRKQVVSFEKVKLTNNEMDKNGQ 107

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007800|ref|XP_002424710.1| T-box protein H15, putative [Pediculus humanus corporis] gi|212508203|gb|EEB11972.1| T-box protein H15, putative [Pediculus humanus corporis]

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/90 (93%), Positives = 88/90 (97%)

Query: 10 MFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPD 69
          MFPTLRVSFTG+RP+Q+YAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAP RLYMHPD
Sbjct: 1  MFPTLRVSFTGVRPEQKYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPCRLYMHPD 60

Query: 70 SPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
          SPFTGDQLRKQVVSFEKVKLTNNEMDK+G 
Sbjct: 61 SPFTGDQLRKQVVSFEKVKLTNNEMDKHGH 90

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|254587462|emb|CAP09639.1| H15 protein [Tribolium castaneum]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/91 (91%), Positives = 88/91 (96%)

Query: 9  RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
          RMF TLRVSFTG+RPDQRYAVL+DIVPVDNKRYRYAYHRSSWLVAGKADPPAP R+Y HP
Sbjct: 4  RMFLTLRVSFTGIRPDQRYAVLLDIVPVDNKRYRYAYHRSSWLVAGKADPPAPCRIYAHP 63

Query: 69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
          DSPF+G+QLRKQVVSFEKVKLTNNEMDKNGQ
Sbjct: 64 DSPFSGEQLRKQVVSFEKVKLTNNEMDKNGQ 94

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008223|gb|EFA04671.1| midline [Tribolium castaneum]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 87/91 (95%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT+RVSFTG+RPDQRYAVL+DIVPVDNKRYRYAYHRSSWLVAGKADPPAP R+  HP
Sbjct: 122 RMFPTVRVSFTGIRPDQRYAVLLDIVPVDNKRYRYAYHRSSWLVAGKADPPAPCRMCAHP 181

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QLRKQVVSFEKVKLTNNEMDK+G 
Sbjct: 182 DSPFTGEQLRKQVVSFEKVKLTNNEMDKHGH 212

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082917|ref|XP_972626.1| PREDICTED: similar to T-box transcription factor TBX20 [Tribolium castaneum]

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 87/91 (95%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT+RVSFTG+RPDQRYAVL+DIVPVDNKRYRYAYHRSSWLVAGKADPPAP R+  HP
Sbjct: 144 RMFPTVRVSFTGIRPDQRYAVLLDIVPVDNKRYRYAYHRSSWLVAGKADPPAPCRMCAHP 203

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QLRKQVVSFEKVKLTNNEMDK+G 
Sbjct: 204 DSPFTGEQLRKQVVSFEKVKLTNNEMDKHGH 234

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025176|ref|XP_003696354.1| PREDICTED: uncharacterized protein LOC100872856 [Apis florea]

 Score =  177 bits (448), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 80/91 (87%), Positives = 86/91 (94%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT RVSF GL+PD RYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAP RLY+HP
Sbjct: 285 RMFPTCRVSFNGLKPDSRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPARLYVHP 344

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTG+QLRKQVVSFEKVKLTNN+MD++G 
Sbjct: 345 DSPFTGEQLRKQVVSFEKVKLTNNDMDRHGH 375

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863843|ref|XP_003707389.1| PREDICTED: T-box protein H15-like [Megachile rotundata]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/91 (87%), Positives = 86/91 (94%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT RVSF+GL+ + RYAVLMDIVPVDNKRYRYAYHRS WLVAGKADPPAP RLY+HP
Sbjct: 196 RMFPTCRVSFSGLKSEGRYAVLMDIVPVDNKRYRYAYHRSCWLVAGKADPPAPARLYVHP 255

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTGDQLRKQVVSFEKVKLTNN+MDK+GQ
Sbjct: 256 DSPFTGDQLRKQVVSFEKVKLTNNDMDKHGQ 286

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417453|ref|XP_003491429.1| PREDICTED: T-box transcription factor TBX20-like [Bombus impatiens]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/91 (87%), Positives = 86/91 (94%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT RVSF+GL+ + RYAVLMDIVPVDNKRYRYAYHRS WLVAGKADPPAP RLY+HP
Sbjct: 194 RMFPTCRVSFSGLKSEGRYAVLMDIVPVDNKRYRYAYHRSCWLVAGKADPPAPARLYVHP 253

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSPFTGDQLRKQVVSFEKVKLTNN+MDK+GQ
Sbjct: 254 DSPFTGDQLRKQVVSFEKVKLTNNDMDKHGQ 284

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|J9JHY2	448	TBX20 "Uncharacterized protein	0.909	0.200	0.822	2.6e-38
ZFIN|ZDB-GENE-000427-7	447	tbx20 "T-box 20" [Danio rerio	0.909	0.201	0.822	2.6e-38
UNIPROTKB|Q8UW76	440	TBX20 "T-box transcription fac	0.909	0.204	0.811	5.5e-38
MGI|MGI:1888496	445	Tbx20 "T-box 20" [Mus musculus	0.909	0.202	0.811	5.5e-38
UNIPROTKB|Q9UMR3	447	TBX20 "T-box transcription fac	0.909	0.201	0.811	7e-38
RGD|1309396	446	Tbx20 "T-box 20" [Rattus norve	0.909	0.201	0.811	7e-38
UNIPROTKB|Q8AXW8	441	tbx20 "T-box transcription fac	0.909	0.204	0.8	3.9e-37
UNIPROTKB|E1BGZ6	449	TBX20 "Uncharacterized protein	0.909	0.200	0.8	4.9e-37
UNIPROTKB|F1SIK8	449	TBX20 "Uncharacterized protein	0.909	0.200	0.8	4.9e-37
FB|FBgn0261963	580	mid "midline" [Drosophila mela	0.919	0.156	0.757	2.7e-35

UNIPROTKB|J9JHY2 TBX20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 74/90 (82%), Positives = 84/90 (93%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+ PD +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct:   129 RMFPTIRVSFSGVDPDAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 188

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   189 DSPFTGEQLLKQMVSFEKVKLTNNELDQHG 218

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

ZFIN|ZDB-GENE-000427-7 tbx20 "T-box 20" [Danio rerio (taxid:7955)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 74/90 (82%), Positives = 84/90 (93%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+ PD +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct:   127 RMFPTIRVSFSGVDPDAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 186

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   187 DSPFTGEQLLKQMVSFEKVKLTNNELDQHG 216

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007507 "heart development" evidence=IEP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0035844 "cloaca development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q8UW76 TBX20 "T-box transcription factor TBX20" [Gallus gallus (taxid:9031)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 73/90 (81%), Positives = 84/90 (93%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+ P+ +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct:   122 RMFPTIRVSFSGVDPEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 181

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   182 DSPFTGEQLMKQMVSFEKVKLTNNELDQHG 211

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

MGI|MGI:1888496 Tbx20 "T-box 20" [Mus musculus (taxid:10090)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 73/90 (81%), Positives = 84/90 (93%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+ P+ +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct:   127 RMFPTIRVSFSGVDPESKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 186

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   187 DSPFTGEQLLKQMVSFEKVKLTNNELDQHG 216

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI;IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO;IDA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO;IDA

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO;IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0003175 "tricuspid valve development" evidence=IMP

GO:0003176 "aortic valve development" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=ISO

GO:0003193 "pulmonary valve formation" evidence=IMP

GO:0003203 "endocardial cushion morphogenesis" evidence=IMP

GO:0003207 "cardiac chamber formation" evidence=IMP

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IMP

GO:0003272 "endocardial cushion formation" evidence=IMP

GO:0003279 "cardiac septum development" evidence=IMP

GO:0003344 "pericardium morphogenesis" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006936 "muscle contraction" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008015 "blood circulation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0010717 "regulation of epithelial to mesenchymal transition" evidence=NAS

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IDA

GO:0021524 "visceral motor neuron differentiation" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IGI;IMP

GO:0035922 "foramen ovale closure" evidence=ISO

GO:0036306 "embryonic heart tube elongation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IMP

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060577 "pulmonary vein morphogenesis" evidence=ISO

UNIPROTKB|Q9UMR3 TBX20 "T-box transcription factor TBX20" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 73/90 (81%), Positives = 84/90 (93%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+ P+ +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct:   128 RMFPTIRVSFSGVDPEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 187

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   188 DSPFTGEQLLKQMVSFEKVKLTNNELDQHG 217

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISS

GO:0003203 "endocardial cushion morphogenesis" evidence=ISS

GO:0003207 "cardiac chamber formation" evidence=ISS

GO:0003344 "pericardium morphogenesis" evidence=ISS

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0021524 "visceral motor neuron differentiation" evidence=ISS

GO:0003279 "cardiac septum development" evidence=ISS

GO:0003272 "endocardial cushion formation" evidence=ISS

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0003193 "pulmonary valve formation" evidence=ISS

GO:0003175 "tricuspid valve development" evidence=ISS

GO:0001947 "heart looping" evidence=ISS

GO:0035922 "foramen ovale closure" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISS

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISS

GO:0048370 "lateral mesoderm formation" evidence=ISS

GO:0001706 "endoderm formation" evidence=ISS

GO:0060413 "atrial septum morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=IMP

GO:0060577 "pulmonary vein morphogenesis" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

RGD|1309396 Tbx20 "T-box 20" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 73/90 (81%), Positives = 84/90 (93%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+ P+ +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct:   128 RMFPTIRVSFSGVDPEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 187

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   188 DSPFTGEQLLKQMVSFEKVKLTNNELDQHG 217

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISO

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISO

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO

GO:0001569 "patterning of blood vessels" evidence=ISO

GO:0001764 "neuron migration" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0003175 "tricuspid valve development" evidence=ISO

GO:0003176 "aortic valve development" evidence=ISO

GO:0003180 "aortic valve morphogenesis" evidence=ISO

GO:0003193 "pulmonary valve formation" evidence=ISO

GO:0003203 "endocardial cushion morphogenesis" evidence=ISO

GO:0003207 "cardiac chamber formation" evidence=ISO

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISO

GO:0003272 "endocardial cushion formation" evidence=ISO

GO:0003279 "cardiac septum development" evidence=ISO

GO:0003344 "pericardium morphogenesis" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006936 "muscle contraction" evidence=ISO

GO:0008015 "blood circulation" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008283 "cell proliferation" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=ISO

GO:0021524 "visceral motor neuron differentiation" evidence=ISO

GO:0035050 "embryonic heart tube development" evidence=ISO

GO:0035922 "foramen ovale closure" evidence=ISO

GO:0036306 "embryonic heart tube elongation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISO

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060577 "pulmonary vein morphogenesis" evidence=ISO

UNIPROTKB|Q8AXW8 tbx20 "T-box transcription factor TBX20" [Xenopus laevis (taxid:8355)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 72/90 (80%), Positives = 83/90 (92%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+  D +Y VLMDIVPVDNKRYRYAYHRS+WLVAGKADPP P RLY+HP
Sbjct:   122 RMFPTIRVSFSGVDADAKYIVLMDIVPVDNKRYRYAYHRSAWLVAGKADPPLPARLYVHP 181

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   182 DSPFTGEQLLKQMVSFEKVKLTNNELDQHG 211

GO:0000578 "embryonic axis specification" evidence=IMP

GO:0001706 "endoderm formation" evidence=IMP

GO:0048370 "lateral mesoderm formation" evidence=IMP

UNIPROTKB|E1BGZ6 TBX20 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 83/90 (92%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+  + +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct:   130 RMFPTIRVSFSGVDSEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 189

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   190 DSPFTGEQLLKQMVSFEKVKLTNNELDQHG 219

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1SIK8 TBX20 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/90 (80%), Positives = 83/90 (92%)

Query:     9 RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
             RMFPT+RVSF+G+  + +Y VLMDIVPVDNKRYRYAYHRSSWLVAGKADPP P RLY+HP
Sbjct:   130 RMFPTIRVSFSGVDSEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHP 189

Query:    69 DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
             DSPFTG+QL KQ+VSFEKVKLTNNE+D++G
Sbjct:   190 DSPFTGEQLLKQMVSFEKVKLTNNELDQHG 219

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

FB|FBgn0261963 mid "midline" [Drosophila melanogaster (taxid:7227)]

 Score = 384 (140.2 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 72/95 (75%), Positives = 83/95 (87%)

Query:     9 RMFPTLRVSFTG----LRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRL 64
             RMFPT+RVSF+G    ++P  RYAVLMDI+P+D+KRYRYAYHRS+WLVAGKADP  P RL
Sbjct:   214 RMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADPAPPARL 273

Query:    65 YMHPDSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
             Y HPDSPF+ + LRKQV+SFEKVKLTNNEMDKNGQ
Sbjct:   274 YAHPDSPFSCEALRKQVISFEKVKLTNNEMDKNGQ 308

GO:0007367 "segment polarity determination" evidence=IMP

GO:0007409 "axonogenesis" evidence=NAS;IMP

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007399 "nervous system development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0042684 "cardioblast cell fate commitment" evidence=IMP

GO:0051890 "regulation of cardioblast differentiation" evidence=IMP

GO:0014019 "neuroblast development" evidence=IMP

GO:0014018 "neuroblast fate specification" evidence=IMP

GO:0003015 "heart process" evidence=IDA

GO:0048665 "neuron fate specification" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007402 "ganglion mother cell fate determination" evidence=IMP

GO:0051960 "regulation of nervous system development" evidence=IMP

GO:0007417 "central nervous system development" evidence=IGI;IMP

GO:0010629 "negative regulation of gene expression" evidence=IGI;IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0042659 "regulation of cell fate specification" evidence=IGI

GO:0035223 "leg disc pattern formation" evidence=IGI

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001226 "RNA polymerase II transcription corepressor binding" evidence=IPI

GO:0001227 "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA;IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SA46	TBX20_XENTR	No assigned EC number	0.8021	0.9191	0.2068	yes	N/A
Q9I9K7	TBX20_DANRE	No assigned EC number	0.8131	0.9191	0.2040	yes	N/A
P90971	TBX12_CAEEL	No assigned EC number	0.6373	0.9191	0.2630	yes	N/A
Q8UW76	TBX20_CHICK	No assigned EC number	0.8021	0.9191	0.2068	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
pfam00907	182	pfam00907, T-box, T-box	9e-49
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	3e-48
smart00425	190	smart00425, TBOX, Domain first found in the mice T	2e-43

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score =  152 bits (386), Expect = 9e-49
 Identities = 54/91 (59%), Positives = 69/91 (75%), Gaps = 2/91 (2%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPTL+VS +GL P+  Y+VL+D VPVD+ RY++  H   W+VAGKA+P  P R+Y+HP
Sbjct: 28  RMFPTLKVSVSGLDPNALYSVLLDFVPVDDHRYKF--HNGEWVVAGKAEPHPPPRVYIHP 85

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP TG    KQ VSF+KVKLTNN++D NG 
Sbjct: 86  DSPATGAHWMKQPVSFDKVKLTNNKLDGNGH 116

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score =  151 bits (383), Expect = 3e-48
 Identities = 52/91 (57%), Positives = 68/91 (74%), Gaps = 2/91 (2%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPTL+V  +GL P+  Y+VLMD+VPVD+ RY+++     W+VAGKA+P  P R+Y+HP
Sbjct: 30  RMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSG--GKWVVAGKAEPHLPPRVYVHP 87

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP TG    KQ VSF+K+KLTNN +D NG 
Sbjct: 88  DSPATGAHWMKQPVSFDKLKLTNNTLDNNGH 118

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score =  138 bits (351), Expect = 2e-43
 Identities = 54/90 (60%), Positives = 69/90 (76%), Gaps = 2/90 (2%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPTL+   +GL P+  Y+VLMD+VPVD+KRY++  +   W+VAGKA+P  P R+Y+HP
Sbjct: 29  RMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKF--NNGKWVVAGKAEPHMPSRVYVHP 86

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
           DSP TG    KQ VSF+KVKLTNN+ DKNG
Sbjct: 87  DSPATGAHWMKQPVSFDKVKLTNNQSDKNG 116

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
cd00182	188	TBOX T-box DNA binding domain of the T-box family	100.0
KOG3586|consensus	437		100.0
smart00425	190	TBOX Domain first found in the mice T locus (Brach	100.0
KOG3585|consensus	328		100.0
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	100.0
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	88.22
PF04775	126	Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT	87.15

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=100.00  E-value=2.2e-42  Score=243.20  Aligned_cols=96  Identities=55%  Similarity=0.950  Sum_probs=92.7

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||++.|.|.|+|+++|++||||.  +|+|++++++|+..+.++|+|||||++|++||++
T Consensus        22 MIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~--~~~W~~~g~~e~~~~~~~~~HPdsp~tG~~wM~~   99 (188)
T cd00182          22 MIITKSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFS--GGKWVVAGKAEPHLPPRVYVHPDSPATGAHWMKQ   99 (188)
T ss_pred             EEEecCCcccccceEEEEeCCCcccceEEEEEEEEcCCcEEEec--CCcEeEcCCCCCCCCCceEECCCCCcCHHHHhhC
Confidence            89999999999999999999999999999999999999999994  8999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccccCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNG   98 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~   98 (99)
                      +|+|++|||||+..++.|
T Consensus       100 ~isF~kvKlTN~~~~~~~  117 (188)
T cd00182         100 PVSFDKLKLTNNTLDNNG  117 (188)
T ss_pred             ccccchhhcccCCCCCCC
Confidence            999999999999977765

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>KOG3586|consensus

Probab=100.00  E-value=1.7e-42  Score=262.01  Aligned_cols=99  Identities=66%  Similarity=1.077  Sum_probs=97.9

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||+++++|+||||.+.|.|.||++++|++||||.|+...|.++|++|+..+.|+|+|||||++|+.||++
T Consensus       100 MIITKsGRRMFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~WlvAGkADp~~p~R~yvHPDSP~sGe~wmkq  179 (437)
T KOG3586|consen  100 MIITKSGRRMFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSWLVAGKADPAPPPRVYVHPDSPASGEQWMKQ  179 (437)
T ss_pred             EEEecccccccceEEEEEecCCcccceEEEEeEEecccceeeeeecccceeeecCCCCCCCCceeeCCCCCCCHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccccCCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNGQ   99 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~~   99 (99)
                      .|||+|+|||||+.|++||
T Consensus       180 iVSFdK~KLTNNelD~nGH  198 (437)
T KOG3586|consen  180 IVSFDKLKLTNNELDDNGH  198 (437)
T ss_pred             hhchheeeccccccccCCc
Confidence            9999999999999999995

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=100.00  E-value=5.3e-42  Score=241.72  Aligned_cols=96  Identities=57%  Similarity=0.960  Sum_probs=93.2

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||++.|.|.|+|+++|++||||  ++|+|+++|++|+..+.++|+|||||++|++||++
T Consensus        21 MIVTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf--~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~wM~~   98 (190)
T smart00425       21 MIVTKSGRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKF--NNGKWVVAGKAEPHMPSRVYVHPDSPATGAHWMKQ   98 (190)
T ss_pred             EEEecCCceeCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEe--cCCcEEEcCCCCCCCCCceEECCCCccCHHHHhhC
Confidence            8999999999999999999999999999999999999999998  58999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccccCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNG   98 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~   98 (99)
                      +|+|++|||||+..+++|
T Consensus        99 ~v~F~kvKlTN~~~~~~~  116 (190)
T smart00425       99 PVSFDKVKLTNNQSDKNG  116 (190)
T ss_pred             cccccccceeccccccCC
Confidence            999999999999988876

>KOG3585|consensus

Probab=100.00  E-value=6.6e-39  Score=241.31  Aligned_cols=96  Identities=44%  Similarity=0.885  Sum_probs=93.4

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||+++|+|.|+|+++|++||+|  .+|+|++++++|+..+.++++||||++||++||++
T Consensus        45 miitK~GRrmFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf--~ng~W~p~gk~e~~~~~~~~~Hpd~p~TG~~WM~~  122 (328)
T KOG3585|consen   45 MIVTKRGRRMFPALKFKVSGLDPNSLYSILLELVPIDDKRYKF--NNGKWVPSGKAEPHVPSKVYVHPDGPATGAHWMSE  122 (328)
T ss_pred             EEEecCCceeccccceeeccCCcccceEEEEEEEEccCceeee--cCCeeccCCCCCCCCCceEEEecCCccchHHHhcC
Confidence            8999999999999999999999999999999999999999998  59999999999998899999999999999999999


Q ss_pred             CceeeeEeeecccccCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNG   98 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~   98 (99)
                      +|+|++|||||+..+.+|
T Consensus       123 ~V~F~kvKITN~~~~~~~  140 (328)
T KOG3585|consen  123 PVSFDKVKITNNKSDKKG  140 (328)
T ss_pred             CcccceeEeeccccccCC
Confidence            999999999999999876

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=100.00  E-value=4.7e-37  Score=214.76  Aligned_cols=96  Identities=48%  Similarity=0.825  Sum_probs=74.7

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+||+.||+|||.|+|+|+||||++.|+|+|+|+++|+++|+|  .+|+|.+++++++..+.++++||+|+++|++||++
T Consensus        20 Mivt~~GR~~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~--~~~~W~~~~~~~~~~~~~~~~h~~~~~~G~~WM~~   97 (184)
T PF00907_consen   20 MIVTKNGRRMFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKF--SNGKWVPSGKAEPPMPPRVVIHPDGPQTGSEWMKN   97 (184)
T ss_dssp             EE-BTT-EE-SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEE--ETTEEEEEEE---B-----EE-TT-SEEHHHHHHS
T ss_pred             EEEeecccccccccEEEecCCCCCcceEEEEEEEEecCceeec--ccccccccccccccccceEEEEecCcCCHHHhCcc
Confidence            8999999999999999999999999999999999999999998  58999999999988888999999999999999999


Q ss_pred             CceeeeEeeecccccCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNG   98 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~   98 (99)
                      +|+|+++||||+..++.|
T Consensus        98 ~v~F~~vkitn~~~~~~~  115 (184)
T PF00907_consen   98 GVSFDKVKITNNKEDKKG  115 (184)
T ss_dssp             -EEETT-EEESSTT-TST
T ss_pred             cEEeehhhhhCCCCCccc
Confidence            999999999999876655

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=88.22  E-value=1.1  Score=25.78  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             eEEEecCCCCCCeeEEEEEEEcc
Q psy17633         15 RVSFTGLRPDQRYAVLMDIVPVD   37 (99)
Q Consensus        15 ~~~vsGLdp~~~Y~i~l~~~~~d   37 (99)
                      .+.|.||+|...|.+.|.....+
T Consensus        57 ~~~i~~L~p~t~Y~~~v~a~~~~   79 (85)
T PF00041_consen   57 SYTITGLQPGTTYEFRVRAVNSD   79 (85)
T ss_dssp             EEEEESCCTTSEEEEEEEEEETT
T ss_pred             eeeeccCCCCCEEEEEEEEEeCC
Confidence            79999999999999999876654

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []

Probab=87.15  E-value=1.1  Score=29.53  Aligned_cols=29  Identities=14%  Similarity=0.367  Sum_probs=18.4

Q ss_pred             ceEEEecCCCCCCeeEEEEEEEccCcceE
Q psy17633         14 LRVSFTGLRPDQRYAVLMDIVPVDNKRYR   42 (99)
Q Consensus        14 l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr   42 (99)
                      +.++|+||.|.+.|.|.+.+.--....|+
T Consensus         5 ~~I~v~GL~p~~~vtl~a~~~~~~g~~w~   33 (126)
T PF04775_consen    5 VDIRVSGLPPGQEVTLRARLTDDNGVQWQ   33 (126)
T ss_dssp             -EEEEES--TT-EEEEEEEEE-TTS-EEE
T ss_pred             eEEEEeCCCCCCEEEEEEEEEeCCCCEEE
Confidence            68999999999999999988854343443

This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
4a04_A	203	Structure Of The Dna-Bound T-Box Domain Of Human Tb		3e-29
2x6u_A	203	Crystal Structure Of Human Tbx5 In The Dna-Free For		8e-24
1h6f_A	193	Human Tbx3, A Transcription Factor Responsible For		3e-23
1xbr_A	184	T Domain From Xenopus Laevis Bound To Dna Length =		1e-18

>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 68/91 (74%)
Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT +V   G+ P   Y +LMD VPVD+KRYRYA+H SSWLVAGKADP  P R++ HP
Sbjct: 44  RMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHP 103
Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP  G Q  KQ+VSF+K+KLTNN +D NG 
Sbjct: 104 DSPAKGAQWMKQIVSFDKLKLTNNLLDDNGH 134

>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203

Iteration: 1
 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP+ +V  TGL P  +Y +LMDIVP D+ RY++A   + W V GKA+P  P RLY+HP
Sbjct: 34  RMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFA--DNKWSVTGKAEPAMPGRLYVHP 91
Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP TG    +Q+VSF+K+KLTNN +D  G 
Sbjct: 92  DSPATGAHWMRQLVSFQKLKLTNNHLDPFGH 122

>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193

Iteration: 1
 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP  +V  +GL    +Y +LMDI+  D+ RY++  H S W+VAGKADP  P R+Y+HP
Sbjct: 33  RMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKF--HNSRWMVAGKADPEMPKRMYIHP 90
Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
           DSP TG+Q   +VV+F K+KLTNN  DK+G
Sbjct: 91  DSPATGEQWMSKVVTFHKLKLTNNISDKHG 120

>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP L+VS +GL P+  Y VL+D V  DN R++Y      W+  GK +P AP  +Y+HP
Sbjct: 30  RMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYV--NGEWVPGGKPEPQAPSCVYIHP 87
Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP  G    K  VSF KVKLT N+M+  GQ
Sbjct: 88  DSPNFGAHWMKDPVSFSKVKLT-NKMNGGGQ 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
4a04_A	203	T-box transcription factor TBX1; transcription, T-	2e-32
2x6u_A	203	T-box transcription factor TBX5; developmental pro	4e-32
1xbr_A	184	Protein (T protein); complex (transcription factor	1e-28
1h6f_A	193	T-box transcription factor TBX3; transcription fac	2e-27

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score =  111 bits (278), Expect = 2e-32
 Identities = 57/91 (62%), Positives = 68/91 (74%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFPT +V   G+ P   Y +LMD VPVD+KRYRYA+H SSWLVAGKADP  P R++ HP
Sbjct: 44  RMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHP 103

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP  G Q  KQ+VSF+K+KLTNN +D NG 
Sbjct: 104 DSPAKGAQWMKQIVSFDKLKLTNNLLDDNGH 134

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score =  110 bits (275), Expect = 4e-32
 Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 2/91 (2%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP+ +V  TGL P  +Y +LMDIVP D+ RY++    + W V GKA+P  P RLY+HP
Sbjct: 34  RMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKF--ADNKWSVTGKAEPAMPGRLYVHP 91

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP TG    +Q+VSF+K+KLTNN +D  G 
Sbjct: 92  DSPATGAHWMRQLVSFQKLKLTNNHLDPFGH 122

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score =  100 bits (251), Expect = 1e-28
 Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP L+VS +GL P+  Y VL+D V  DN R++Y      W+  GK +P AP  +Y+HP
Sbjct: 30  RMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKY--VNGEWVPGGKPEPQAPSCVYIHP 87

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNG 98
           DSP  G    K  VSF KVKLTN       
Sbjct: 88  DSPNFGAHWMKDPVSFSKVKLTNKMNGGGQ 117

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score = 97.9 bits (243), Expect = 2e-27
 Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 2/91 (2%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP  +V  +GL    +Y +LMDI+  D+ RY++  H S W+VAGKADP  P R+Y+HP
Sbjct: 33  RMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKF--HNSRWMVAGKADPEMPKRMYIHP 90

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP TG+Q   +VV+F K+KLTNN  DK+G 
Sbjct: 91  DSPATGEQWMSKVVTFHKLKLTNNISDKHGF 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
4a04_A	203	T-box transcription factor TBX1; transcription, T-	100.0
2x6u_A	203	T-box transcription factor TBX5; developmental pro	100.0
1h6f_A	193	T-box transcription factor TBX3; transcription fac	100.0
1xbr_A	184	Protein (T protein); complex (transcription factor	100.0
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	84.6
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	83.74
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	83.39
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	82.84
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	82.67
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	82.26
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	82.22
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	82.17
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	82.1
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	81.93
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	81.56
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	81.41
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	81.36
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	81.29
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	81.19
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	81.18
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	80.91
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	80.22

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=100.00  E-value=2.3e-44  Score=254.90  Aligned_cols=98  Identities=59%  Similarity=0.947  Sum_probs=95.6

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||++.|+|.|+|+++|++||||.+++|+|+++|++|+..+.++|+|||||++|++||++
T Consensus        36 MIITK~GRrmFP~l~~~vsGLdp~~~Y~~~l~~~~~D~~ryry~~~~~~W~~~gkae~~~p~r~~~Hpdsp~tG~~WM~~  115 (203)
T 4a04_A           36 MIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQ  115 (203)
T ss_dssp             EECCSSCEECSSCEEEEEESCCTTSEEEEEEEEEESCSEEEEEETTTTEEEEEEECCCCCCCCCCBCTTCSEEHHHHHHS
T ss_pred             EEEEeCCcccCCceEEEEeCCCcccCcEEEEEEEEccCCeEEecccCCCEeECCccCCCCCCceEEcCCCCcCHHHHhhC
Confidence            89999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccccCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNG   98 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~   98 (99)
                      +|+|++||||||..+++|
T Consensus       116 ~VsF~klKLTNn~~d~~g  133 (203)
T 4a04_A          116 IVSFDKLKLTNNLLDDNG  133 (203)
T ss_dssp             CEEECSCEEECCTTCCSS
T ss_pred             cceeeeeecccCccCcCC
Confidence            999999999999988776

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=100.00  E-value=1.5e-43  Score=250.73  Aligned_cols=97  Identities=51%  Similarity=0.888  Sum_probs=90.8

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||++.|+|.|+|+++|++||||  ++|+|+++|++|+..+.++|+|||||++|++||++
T Consensus        26 MIiTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf--~~~~W~~~gkae~~~p~r~y~Hpdsp~tG~~WM~~  103 (203)
T 2x6u_A           26 MIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKF--ADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQ  103 (203)
T ss_dssp             EECBSSCEECSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEE--ETTEEEEEEECCCC---CCEECTTCSEEHHHHHHS
T ss_pred             EEEecCCcccCceeEEEEeCCCcccCeEEEEEEEEccCceeEE--eCCcEeECcccCCCCCcceEECCCCccchHHHhhC
Confidence            8999999999999999999999999999999999999999998  59999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccccCCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNGQ   99 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~~   99 (99)
                      +|+|++||||||..|+.|+
T Consensus       104 ~VsF~klKLTNn~~d~~g~  122 (203)
T 2x6u_A          104 LVSFQKLKLTNNHLDPFGH  122 (203)
T ss_dssp             CEECTTCEEECCTTCSSCC
T ss_pred             CceeeeeeceeccCCccce
Confidence            9999999999999887763

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=100.00  E-value=1.8e-43  Score=248.67  Aligned_cols=97  Identities=51%  Similarity=0.872  Sum_probs=93.6

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||++.|+|.|+|+++|++||||  ++|+|+++|++|++.|.++|+|||||++|++||++
T Consensus        25 MIiTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~d~~rykf--~~~~W~~~gkae~~~p~r~~~Hpdsp~tG~~WM~~  102 (193)
T 1h6f_A           25 MVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKF--HNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSK  102 (193)
T ss_dssp             EECCTTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEE--ETTEEEEEEECCCCCCCCCEECTTCSEEHHHHTTS
T ss_pred             EEEecCCcccCceeEEEEeCCCcccceEEEEEEEEccCceeec--cCCcEEECcccCCCCCcceEecCCCcccHHHHhhC
Confidence            8999999999999999999999999999999999999999998  69999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccccCCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNGQ   99 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~~   99 (99)
                      +|+|++||||||..+++|+
T Consensus       103 ~VsF~klKLTNn~~~~~~~  121 (193)
T 1h6f_A          103 VVTFHKLKLTNNISDKHGF  121 (193)
T ss_dssp             CEECTTCCEECCTTCCSCC
T ss_pred             CcceeeeeeeccCCCCCCc
Confidence            9999999999999887763

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=100.00  E-value=5.8e-43  Score=244.55  Aligned_cols=92  Identities=47%  Similarity=0.790  Sum_probs=89.5

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||++.|+|.|+|+++|++||||  ++|+|+++|++|++.+.++|+|||||++|++||++
T Consensus        22 MIiTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~--~~~~W~~~gkae~~~p~r~~~Hpdsp~~G~~WM~~   99 (184)
T 1xbr_A           22 MIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKY--VNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKD   99 (184)
T ss_dssp             EECBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEE--ETTEEEEESSCCCCCCCCCEECTTCSEEHHHHHHS
T ss_pred             EEEecCCcccCCccEEEEeCCCcccCeEEEEEEEEccCceEEE--ECCcEEEcCccCCCCCcceEECCCCchhHHHHhhC
Confidence            8999999999999999999999999999999999999999998  69999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccc
Q psy17633         81 VVSFEKVKLTNNEM   94 (99)
Q Consensus        81 ~v~F~~lklTN~~~   94 (99)
                      +|+|++||||||..
T Consensus       100 ~VsF~klKlTNn~~  113 (184)
T 1xbr_A          100 PVSFSKVKLTNKMN  113 (184)
T ss_dssp             CEECTTCEEESSCC
T ss_pred             CceeccccccccCC
Confidence            99999999999953

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.60  E-value=1.2  Score=26.24  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=18.8

Q ss_pred             eEEEecCCCCCCeeEEEEEEE
Q psy17633         15 RVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        15 ~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      .|.|.||.|...|.+.|.-.-
T Consensus        62 ~~~l~~L~p~t~Y~~~V~A~~   82 (104)
T 2dkm_A           62 EVLLDGLEPGRDYEVSVQSLR   82 (104)
T ss_dssp             EEEEESCCTTCCEEEEEEEEC
T ss_pred             EEEECCCCCCCEEEEEEEEEC
Confidence            899999999999999887653

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A

Probab=83.74  E-value=1.4  Score=25.85  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=21.7

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEccC
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPVDN   38 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~d~   38 (99)
                      .-.|.|.||.|...|.+.|.-...+.
T Consensus        59 ~t~~~l~~L~p~t~Y~~~V~A~~~~~   84 (101)
T 3k2m_C           59 SSTATISGLSPGVDYTITVYAWGEDS   84 (101)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEEECT
T ss_pred             ccEEEECCCCCCCEEEEEEEEEeCCc
Confidence            45799999999999999998776553

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=83.39  E-value=1.1  Score=25.73  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             CcceEEEecCCCCCCeeEEEEEEE
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ....+.|.||.|...|.+.|.-..
T Consensus        53 ~~~~~~l~~L~p~t~Y~~~V~A~~   76 (94)
T 1j8k_A           53 EEDTAELQGLRPGSEYTVSVVALH   76 (94)
T ss_dssp             SCCEEEECSCCCCSEEEEEEEECS
T ss_pred             CccEEEeCCCCCCCEEEEEEEEEc
Confidence            456899999999999998887643

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=82.84  E-value=1.2  Score=26.46  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=18.7

Q ss_pred             cceEEEecCCCCCCeeEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      .-.+.|.||+|...|.+.|.-.
T Consensus        63 ~ts~~l~~L~p~t~Y~~~V~A~   84 (103)
T 3t04_D           63 YSTATISGLKPGVDYTITVYAY   84 (103)
T ss_dssp             CCEEEECSCCTTCCEEEEEEEE
T ss_pred             cCEEEeCCCCCCCEEEEEEEEE
Confidence            4578999999999999888654

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=82.67  E-value=1.3  Score=26.21  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.3

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      .-.|.|.||.|...|.+.|.-.-.
T Consensus        55 ~~~~~l~~L~p~t~Y~~~V~A~~~   78 (104)
T 2rb8_A           55 ENQYSIGNLKPDTEYEVSLISRRG   78 (104)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEET
T ss_pred             cCEEEeCCCCCCCEEEEEEEEEeC
Confidence            357899999999999999877653

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.26  E-value=1.2  Score=27.44  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=18.7

Q ss_pred             cceEEEecCCCCCCeeEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      ...+.|.||.|...|.+.|.-.
T Consensus        77 ~~~~~v~gL~P~T~Y~f~V~A~   98 (123)
T 2edd_A           77 SLSYTATGLKPNTMYEFSVMVT   98 (123)
T ss_dssp             SSEEEEESCCTTCEEEEEEEEC
T ss_pred             ceEEEecCCCCCCEEEEEEEEe
Confidence            4679999999999999988543

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}

Probab=82.22  E-value=1.7  Score=25.50  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=19.9

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...+.|+||.|...|.+.|.-...
T Consensus        54 ~t~~~l~gL~P~t~Y~~~V~A~~~   77 (98)
T 3tes_A           54 ERSYDLTGLKPGTEYTVSIYGVKG   77 (98)
T ss_dssp             CSEEEECSCCTTCEEEEEEEEEET
T ss_pred             cCEEEECCCCCCCEEEEEEEEEeC
Confidence            457999999999999998876543

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=82.17  E-value=1.4  Score=25.57  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      .-.+.|.||.|...|.+.|.-...
T Consensus        57 ~t~~~l~~L~p~t~Y~v~V~A~~~   80 (97)
T 3qht_C           57 SSTATISGLSPGVDYTITVYAYYS   80 (97)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEEE
T ss_pred             cCEEEeCCCCCCCEEEEEEEEEeC
Confidence            357899999999999998876553

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=82.10  E-value=1.3  Score=25.87  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=20.2

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...+.|.||.|...|.+.|.-.-.
T Consensus        62 ~~~~~l~~L~p~t~Y~~~V~A~n~   85 (108)
T 2djs_A           62 TNTARIDGLRPGMVYVVQVRARTV   85 (108)
T ss_dssp             SSEEEEESCCTTCEEEEEEEEEES
T ss_pred             ccEEEEcCCCCCCEEEEEEEEEeC
Confidence            468999999999999998876544

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=81.93  E-value=1.5  Score=25.61  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             CcceEEEecCCCCCCeeEEEEEEEc
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ....|.|.||.|...|.+.|.-.-.
T Consensus        53 ~~t~~~i~~L~p~t~Y~~~V~A~n~   77 (100)
T 3b83_A           53 SITSLTLTNLEPNTTYEIRIVARNG   77 (100)
T ss_dssp             TEEEEEECSCCTTCEEEEEEEEEET
T ss_pred             cceEEEECCCCCCCEEEEEEEEEeC
Confidence            3578999999999999998876543

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=81.56  E-value=1.3  Score=26.29  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=19.3

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        68 ~~~~~i~~L~p~t~Y~~~V~A~n   90 (114)
T 1x4y_A           68 RYWHSISHLQPETSYDIKMQCFN   90 (114)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEC
T ss_pred             EeEEEcCCCCCCCEEEEEEEEEc
Confidence            45799999999999998887544

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=81.41  E-value=1.4  Score=25.61  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=19.5

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        61 ~~~~~i~~L~p~t~Y~~~V~A~n   83 (107)
T 2dn7_A           61 DQHFTVTGLHKGTTYIFRLAAKN   83 (107)
T ss_dssp             CCEEEEECCCTTCEEEEEEEEEE
T ss_pred             ccEEEeCCCCCCCEEEEEEEEEc
Confidence            35899999999999999887654

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=81.36  E-value=1.2  Score=27.35  Aligned_cols=23  Identities=13%  Similarity=0.124  Sum_probs=19.7

Q ss_pred             ceEEEecCCCCCCeeEEEEEEEc
Q psy17633         14 LRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        14 l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      -.|.|+||.|...|.|.|.-+..
T Consensus        70 t~~~l~gL~PgT~Y~~~V~A~~~   92 (112)
T 2cui_A           70 HSAVLRDLRSGTLYSLTLYGLRG   92 (112)
T ss_dssp             CEEEECSCCTTCEEEEEEEEECS
T ss_pred             CEEEeCCCCCCCEEEEEEEEEEC
Confidence            47899999999999999887653

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=81.29  E-value=1.1  Score=26.79  Aligned_cols=23  Identities=9%  Similarity=0.125  Sum_probs=20.0

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-..
T Consensus        58 ~t~~~l~~L~P~t~Y~~~V~A~~   80 (115)
T 2cuh_A           58 AVDYPLHDLVLHTNYTATVRGLR   80 (115)
T ss_dssp             CSEEEECSCCSSSEEEEEEEEEE
T ss_pred             ccEEEEeCCCCCCEEEEEEEEEe
Confidence            35799999999999999998765

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=81.19  E-value=1.6  Score=25.13  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...+.|.||.|...|.+.|.-...
T Consensus        54 ~~~~~i~~L~p~t~Y~~~V~A~n~   77 (98)
T 3teu_A           54 STSVTITGLTPGVEYVVSVYALKD   77 (98)
T ss_dssp             CSEEEECSCCTTCEEEEEEEEEET
T ss_pred             cCEEEecCCCCCCEEEEEEEEEeC
Confidence            568999999999999998866543

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.18  E-value=1.6  Score=25.73  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=19.3

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...+.|.||.|...|.+.|.-.-
T Consensus        63 ~~~~~i~~L~p~t~Y~~~V~A~n   85 (109)
T 2e7h_A           63 ENRAELRGLKRGASYLVQVRARS   85 (109)
T ss_dssp             SSEEEEESCCTTSCEEEEEEEEC
T ss_pred             CCEEEECCCCCCCeEEEEEEEEe
Confidence            35899999999999999887654

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=80.91  E-value=1.6  Score=25.79  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=19.8

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        58 ~ts~~l~~L~p~t~Y~~~V~A~~   80 (105)
T 2cum_A           58 ITSHQLLGLFPSTSYNARLQAMW   80 (105)
T ss_dssp             CSEEEECSCCTTCEEEEEEEEEB
T ss_pred             ccEEEECCCCCCCEEEEEEEEEe
Confidence            45899999999999999887764

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=80.22  E-value=1.3  Score=26.83  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...+.|.||.|...|.+.|....
T Consensus        67 ~~~~~i~gL~P~T~Y~f~V~A~~   89 (113)
T 1x5j_A           67 TLSYLVTGLKPNTLYEFSVMVTK   89 (113)
T ss_dssp             SSEEEEESCCTTCEECCEEEEEC
T ss_pred             cCEEEeCCCCCCcEEEEEEEEec
Confidence            45899999999999999986544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	2e-39
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	7e-39

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (319), Expect = 2e-39
 Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 2/91 (2%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP  +V  +GL    +Y +LMDI+  D+ RY++  H S W+VAGKADP  P R+Y+HP
Sbjct: 30  RMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKF--HNSRWMVAGKADPEMPKRMYIHP 87

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP TG+Q   +VV+F K+KLTNN  DK+G 
Sbjct: 88  DSPATGEQWMSKVVTFHKLKLTNNISDKHGF 118

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  125 bits (316), Expect = 7e-39
 Identities = 45/91 (49%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 9   RMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHP 68
           RMFP L+VS +GL P+  Y VL+D V  DN R++Y      W+  GK +P AP  +Y+HP
Sbjct: 30  RMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKY--VNGEWVPGGKPEPQAPSCVYIHP 87

Query: 69  DSPFTGDQLRKQVVSFEKVKLTNNEMDKNGQ 99
           DSP  G    K  VSF KVKLTN  M+  GQ
Sbjct: 88  DSPNFGAHWMKDPVSFSKVKLTNK-MNGGGQ 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	100.0
d1xbra_	184	T domain from Brachyury transcription factor {Afri	100.0
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	87.84
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	87.69
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	87.41
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	86.9
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	86.67
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	86.39
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	86.37
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	86.36
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	86.31
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	86.05
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	85.98
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	85.86
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	85.8
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	85.7
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	85.4
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	85.34
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	85.31
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	85.27
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	85.24
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	85.11
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	85.09
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	84.41
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	84.41
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	84.25
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	84.08
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	83.9
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	83.74
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	83.25
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	83.04
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	82.99
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	82.98
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	82.91
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	82.64
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	82.56
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	82.39
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	82.07
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	82.02
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	81.88
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	81.78
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	81.7
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	81.42
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	81.37
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	80.74
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	80.5
d2crma1	107	Fibronectin type-III domain containing protein 3a,	80.32

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-43  Score=242.87  Aligned_cols=96  Identities=51%  Similarity=0.890  Sum_probs=93.2

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||++.|.|.|+|+++|++||+|  ++|+|++++++++..+.++|+|||||++|++||++
T Consensus        22 MIvTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf--~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~WM~~   99 (184)
T d1h6fa_          22 MVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKF--HNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSK   99 (184)
T ss_dssp             EECCTTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEE--ETTEEEEEEECCCCCCCCCEECTTCSEEHHHHTTS
T ss_pred             EEEecCCcccCceeEEEEeccCCCcceEEEEEEEECcCCeeeE--eCCcEEEcccCCCCCCCceEECCCCCcCHHHHHhC
Confidence            8999999999999999999999999999999999999999998  59999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccccCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNG   98 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~   98 (99)
                      +|+|+++||||+..+++|
T Consensus       100 ~i~F~k~KltN~~~~~~~  117 (184)
T d1h6fa_         100 VVTFHKLKLTNNISDKHG  117 (184)
T ss_dssp             CEECTTCCEECCTTCCSC
T ss_pred             ccccchhhhcCCccCccc
Confidence            999999999999988876

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=2e-42  Score=239.95  Aligned_cols=95  Identities=46%  Similarity=0.801  Sum_probs=90.6

Q ss_pred             CccccCCCCCCCcceEEEecCCCCCCeeEEEEEEEccCcceEEeeeCCcEEEcccCCCCCCCceEEcCCCCCchHHHhhC
Q psy17633          1 MTGLSHFLRMFPTLRVSFTGLRPDQRYAVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPAPLRLYMHPDSPFTGDQLRKQ   80 (99)
Q Consensus         1 ~~~~~~gRrmFP~l~~~vsGLdp~~~Y~i~l~~~~~d~~ryr~~~~~~~W~~~~~~e~~~~~~~~~Hp~~~~tG~~WM~~   80 (99)
                      |+|||.||||||.|+|+|+||||++.|.|.|+|+++|++||||  ++++|+++++++++.+.++|+|||||++|++||++
T Consensus        22 MIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~ryky--~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~WM~~   99 (184)
T d1xbra_          22 MIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKY--VNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKD   99 (184)
T ss_dssp             EECBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEE--ETTEEEEESSCCCCCCCCCEECTTCSEEHHHHHHS
T ss_pred             EEEecCCcccCCceEEEEECCCcCccEEEEEEEEEccCcEEEE--ECCcEEECCccCCCCCCceEECCCCCcCHHHHhhC
Confidence            8999999999999999999999999999999999999999998  59999999999999999999999999999999999


Q ss_pred             CceeeeEeeecccccCCC
Q psy17633         81 VVSFEKVKLTNNEMDKNG   98 (99)
Q Consensus        81 ~v~F~~lklTN~~~~~~~   98 (99)
                      +|+|++|||||+. ++.|
T Consensus       100 ~i~F~klKlTN~~-~~~~  116 (184)
T d1xbra_         100 PVSFSKVKLTNKM-NGGG  116 (184)
T ss_dssp             CEECTTCEEESSC-CTTT
T ss_pred             ccccceeeeeccC-CCCC
Confidence            9999999999984 4444

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.2  Score=27.62  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      .-.|.|.||.|...|.+.|.-...
T Consensus        49 ~t~~~l~~L~p~t~Y~~~V~a~~~   72 (91)
T d1fnaa_          49 KSTATISGLKPGVDYTITVYAVTG   72 (91)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEECT
T ss_pred             ccEEEeCCCCCCCEEEEEEEEEeC
Confidence            458999999999999998876543

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.69  E-value=0.23  Score=27.14  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=19.5

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      .-.|.|.||.|...|.+.|.-..
T Consensus        50 ~~~~~~~~L~p~t~Y~v~V~a~~   72 (87)
T d1qr4a1          50 STSFILRGLDAGTEYTISLVAEK   72 (87)
T ss_dssp             CSEEEEESCCSSCEEEEEEEEES
T ss_pred             cCEEEECCCCcCCEEEEEEEEEc
Confidence            45799999999999999987653

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.41  E-value=0.41  Score=27.14  Aligned_cols=27  Identities=15%  Similarity=0.233  Sum_probs=22.9

Q ss_pred             CCcceEEEecCCCCCCeeEEEEEEEcc
Q psy17633         11 FPTLRVSFTGLRPDQRYAVLMDIVPVD   37 (99)
Q Consensus        11 FP~l~~~vsGLdp~~~Y~i~l~~~~~d   37 (99)
                      .+...|.|+||.|...|.+.|.-....
T Consensus        62 ~~~~~~~l~~L~p~t~Y~frVra~~~~   88 (106)
T d1cd9b2          62 SSKDQFELCGLHQAPVYTLQMRCIRSS   88 (106)
T ss_dssp             SCEEEEEECCCCSCSCEEEEEEEEESS
T ss_pred             CCceEEEEeccCCCeEEEEEEEEEeCC
Confidence            467889999999999999999866553

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=0.28  Score=27.72  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             cceEEEecCCCCCCeeEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      ..+|.|+||.|...|.+.|.-.
T Consensus        66 ~~~~~i~~L~p~t~Y~~~V~A~   87 (106)
T d1wfna1          66 TLEYRVTGLTALTTYTIEVAAM   87 (106)
T ss_dssp             CCEEEEESCCTTCEEEEEEEEE
T ss_pred             eeEEEEccCCCCCEEEEEEEEE
Confidence            4689999999999999988754

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.67  E-value=0.3  Score=27.55  Aligned_cols=24  Identities=21%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             CcceEEEecCCCCCCeeEEEEEEE
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      +...|.|+||.|...|.+.|.-..
T Consensus        62 ~~~~~~i~~L~p~t~Y~frVra~n   85 (105)
T d2d9qb2          62 EALQYELCGLLPATAYTLQIRCIR   85 (105)
T ss_dssp             CEEEEEECSCCSCCCEEEEEEEEE
T ss_pred             CcceeEEecccCCeEEEEEEEEEe
Confidence            456899999999999999988654

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.39  E-value=0.39  Score=26.09  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=19.2

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        53 ~~~~~~~~L~p~t~Y~~~V~a~n   75 (89)
T d1fnha3          53 VTEATITGLEPGTEYTIYVIALK   75 (89)
T ss_dssp             CCEEEEESCCTTCEEEEEEEEES
T ss_pred             ccEEEEEeeeCCCEEEEEEEEEc
Confidence            45799999999999999986543

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.37  E-value=0.36  Score=26.89  Aligned_cols=27  Identities=15%  Similarity=0.258  Sum_probs=23.1

Q ss_pred             CCcceEEEecCCCCCCeeEEEEEEEcc
Q psy17633         11 FPTLRVSFTGLRPDQRYAVLMDIVPVD   37 (99)
Q Consensus        11 FP~l~~~vsGLdp~~~Y~i~l~~~~~d   37 (99)
                      .+...+.|.+|+|...|.+.|+-...+
T Consensus        58 ~~~~~~~l~~L~p~t~Y~~rVRa~~~~   84 (100)
T d2gysa4          58 QNAHSMALPALEPSTRYWARVRVRTSR   84 (100)
T ss_dssp             ESCSEEECCCCCSSCCCEEEEEEEECC
T ss_pred             CCceEEEeCCCCCCCeEEEEEEEEECC
Confidence            456789999999999999999977644

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.36  E-value=0.5  Score=26.08  Aligned_cols=26  Identities=19%  Similarity=0.461  Sum_probs=22.0

Q ss_pred             CcceEEEecCCCCCCeeEEEEEEEcc
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIVPVD   37 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~~~d   37 (99)
                      ....|.|.||+|...|.+.|.-....
T Consensus        60 ~~~~~~i~~L~p~t~Y~~rVra~~~~   85 (104)
T d2b5ib2          60 KQEWICLETLTPDTQYEFQVRVKPLQ   85 (104)
T ss_dssp             CCCEEEECSCCTTCEEEEEEEEEESC
T ss_pred             CcEEEEECCCCCCCEEEEEEEEEECC
Confidence            46789999999999999999977543

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.31  E-value=0.39  Score=26.48  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...|.|.||.|...|.+.|.-...
T Consensus        56 ~~~~~i~~L~p~t~Y~v~V~a~~~   79 (93)
T d1tdqa1          56 LSQYSVQALRPGSRYEVSISAVRG   79 (93)
T ss_dssp             CSEEEECSCCTTCEEEEEEEEEET
T ss_pred             ceEEEEeCcccceEEEEEEEEEeC
Confidence            578999999999999999887653

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.05  E-value=0.29  Score=26.59  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=19.8

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        55 ~~~~~i~~L~p~t~Y~~~V~a~~   77 (92)
T d1tdqa2          55 TTKTTLTDLVPGTEYGVGISAVM   77 (92)
T ss_dssp             EEEEEECSCCTTCEEEEEEEEEE
T ss_pred             eeEEEECCccCCCEEEEEEEEEe
Confidence            45799999999999999987664

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.98  E-value=0.45  Score=25.90  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.5

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...|.|.||.|...|.+.|.-...
T Consensus        54 ~~~~~i~~L~p~t~Y~~~V~a~~~   77 (90)
T d1tena_          54 ENQYSIGNLKPDTEYEVSLISRRG   77 (90)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEET
T ss_pred             cceeeEeeecCCCEEEEEEEEEeC
Confidence            458999999999999999887653

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.53  Score=26.25  Aligned_cols=26  Identities=12%  Similarity=0.084  Sum_probs=21.5

Q ss_pred             CcceEEEecCCCCCCeeEEEEEEEcc
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIVPVD   37 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~~~d   37 (99)
                      ....|.|.||+|...|.+.|+-...+
T Consensus        53 ~~~~~~~~~L~p~t~Y~frVRa~~~~   78 (95)
T d2b5ic1          53 YRHKFSLPSVDGQKRYTFRVRSRFNP   78 (95)
T ss_dssp             SSCEEEECSCCTTSCEEEEEEEECCS
T ss_pred             ccceeEcCCCCCCCEEEEEEEEeeCC
Confidence            35689999999999999999865544

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.80  E-value=0.47  Score=25.78  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=19.6

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||+|...|.+.|.-..
T Consensus        54 ~~~~~i~~L~p~t~Y~~~V~a~~   76 (91)
T d1fnfa2          54 DNAVVLTNLLPGTEYVVSVSSVY   76 (91)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEE
T ss_pred             ceEEEEeceeCCCEEEEEEEEEc
Confidence            46899999999999999986554

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.39  Score=26.05  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=19.9

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        52 ~~~~~i~~L~p~t~Y~~~V~a~n   74 (90)
T d1fnha1          52 SSSVVVSGLMVATKYEVSVYALK   74 (90)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CeEEEEecccCceEEEEEEEEEe
Confidence            45799999999999999987764

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.40  E-value=0.22  Score=28.30  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=19.4

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.|.|.-.-
T Consensus        55 ~~~~~l~gL~P~t~Y~v~v~av~   77 (93)
T d1owwa_          55 LNSYTIKGLKPGVVYEGQLISIQ   77 (93)
T ss_dssp             CCEEEECSCCSSEEEEEEEEEEE
T ss_pred             ccEEEECCcccCcEEEEEEEEEe
Confidence            35799999999999999887653

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=0.33  Score=26.66  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             cceEEEecCCCCCCeeEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      ...|.|+||.|...|.+.|.-.
T Consensus        54 ~~~~~i~~L~p~t~Y~~~V~a~   75 (94)
T d1j8ka_          54 EDTAELQGLRPGSEYTVSVVAL   75 (94)
T ss_dssp             CCEEEECSCCCCSEEEEEEEEC
T ss_pred             ccEEEECCCCCCCEEEEEEEEE
Confidence            5679999999999999988643

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=0.48  Score=25.80  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=19.5

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||+|...|.+.|...-
T Consensus        53 ~~~~~i~~L~p~t~Y~~~V~A~n   75 (92)
T d1qg3a1          53 VPSVELTNLYPYCDYEMKVCAYG   75 (92)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEEC
T ss_pred             ccEEEECCCCCCcEEEEEEEEEe
Confidence            45799999999999999886653

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=0.52  Score=25.60  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=19.3

Q ss_pred             CcceEEEecCCCCCCeeEEEEEE
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      ....|.|.||.|...|.+.|.-.
T Consensus        55 ~~~~~~v~~L~p~t~Y~~rV~A~   77 (96)
T d1x5xa1          55 EDLAYTVKNLRRSTKYKFKVIAY   77 (96)
T ss_dssp             SCSEEEEESCCSSCEEEEEEEEE
T ss_pred             CCCEEEECCCCCCCEEEEEEEEE
Confidence            35689999999999999888654

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.33  Score=26.68  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=19.5

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ..+|.|.||.|...|.+.|.-..
T Consensus        52 ~~~~~i~~L~p~t~Y~~~V~a~~   74 (93)
T d2cuma1          52 ITSHQLLGLFPSTSYNARLQAMW   74 (93)
T ss_dssp             CSEEEECSCCTTCEEEEEEEEEB
T ss_pred             ccEEEEeCccCCCEEEEEEEEEe
Confidence            35799999999999999987653

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.51  Score=25.90  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-..
T Consensus        59 ~t~~~i~~L~p~t~Y~~~V~a~~   81 (95)
T d2fnba_          59 VGYYTVTGLEPGIDYDISVITLI   81 (95)
T ss_dssp             CSEEEECCCCTTSEEEEEEEEEE
T ss_pred             CeEEEEecccCCEEEEEEEEEEe
Confidence            36799999999999999987654

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.09  E-value=0.62  Score=25.24  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      .-.+.|.||.|...|.+.|.-...
T Consensus        51 ~~~~~~~~L~p~t~Y~v~V~a~~~   74 (86)
T d1tdqa3          51 RTSYTLTDLEPGAEYIISITAERG   74 (86)
T ss_dssp             CSEEEECCCCTTCCEEEEEEEEET
T ss_pred             ccEEEECCCccccEEEEEEEEEcC
Confidence            347899999999999999887653

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=0.55  Score=25.48  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        53 ~~~~~i~~L~p~t~Y~~~V~a~~   75 (89)
T d1fnfa3          53 RNSITLTNLTPGTEYVVSIVALN   75 (89)
T ss_dssp             CCEEEEESCCTTCEEEEEEEEEE
T ss_pred             ccEEEECCCcccCEEEEEEEEEc
Confidence            45799999999999999886654

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=0.45  Score=26.40  Aligned_cols=23  Identities=17%  Similarity=0.166  Sum_probs=19.9

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      .+.|.|.||+|...|.+.|...-
T Consensus        63 ~~~~~i~~L~p~t~Y~~~V~A~n   85 (103)
T d1qg3a2          63 NRMLLIENLRESQPYRYTVKARN   85 (103)
T ss_dssp             CCEEEECCCCTTCCEEEEEEEEE
T ss_pred             ceEEEEeecCCCCEEEEEEEEEc
Confidence            46899999999999999887664

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.25  E-value=0.46  Score=26.53  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             CcceEEEecCCCCCCeeEEEEEE
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      +...|.|+||+|...|.+.|.-.
T Consensus        61 ~~~~~~i~~L~p~t~Y~~~V~A~   83 (102)
T d1x5za1          61 PGTSYRLQGLKPNSLYYFRLAAR   83 (102)
T ss_dssp             SSSEEEEECCCTTCEEEECEEEE
T ss_pred             CcCEEEECCCCCCCEEEEEEEEE
Confidence            45689999999999999888654

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=0.51  Score=26.21  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=19.9

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.|.|.-..
T Consensus        57 ~~~~~i~~L~p~t~Y~v~V~a~~   79 (94)
T d1fnfa1          57 QSSCTFDNLSPGLEYNVSVYTVK   79 (94)
T ss_dssp             CCEEECCCCCTTSCEEEEEEEEE
T ss_pred             ccEEEECCCCCCCEEEEEEEEEc
Confidence            46899999999999999997654

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.90  E-value=0.3  Score=27.72  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      .+.+.|.||+|...|.+.|.-.-
T Consensus        67 ~~~~~i~~L~p~t~Y~frV~A~N   89 (107)
T d2ic2a1          67 SFTASVTDLKPQHTYRFRILAVY   89 (107)
T ss_dssp             EEEEEECSCCSSEEEEEEEEEEE
T ss_pred             eeEEEECCCcCCcEEEEEEEEEc
Confidence            56899999999999998776544

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.74  E-value=0.65  Score=25.90  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             CcceEEEecCCCCCCeeEEEEEEEc
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...++.|+||.|...|.+.|.-.-.
T Consensus        53 ~~t~~~i~~L~p~t~Y~~rV~A~n~   77 (94)
T d1x5aa1          53 LEPRVLLTKLQPDTTYIVRVRTLTP   77 (94)
T ss_dssp             SSSEEEEESCCSSCEEEEEEEEECS
T ss_pred             ccCEEEECCCCCCCEEEEEEEEEcC
Confidence            4568999999999999988865543

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.25  E-value=0.64  Score=25.97  Aligned_cols=23  Identities=13%  Similarity=0.004  Sum_probs=19.4

Q ss_pred             CcceEEEecCCCCCCeeEEEEEE
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      ....|.|+||.|...|.+.|.-.
T Consensus        57 ~~~~~~v~~L~~~~~Y~frV~A~   79 (98)
T d1x5ya1          57 ERCGFTVKDLPTGARILFRVVGV   79 (98)
T ss_dssp             SSSEEEEECCCTTCCEEEEEEEE
T ss_pred             ceeEEEECCCcCCeEEEEEEEEE
Confidence            45689999999999999887654

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.04  E-value=0.49  Score=26.16  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=19.5

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...+.|.||+|...|.+.|.-..
T Consensus        64 ~~~~~v~~L~p~t~Y~~~V~a~~   86 (101)
T d2cuia1          64 RHSAVLRDLRSGTLYSLTLYGLR   86 (101)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEC
T ss_pred             eeEEEeCCCCcCCEEEEEEEEEe
Confidence            46789999999999999996653

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.99  E-value=0.44  Score=26.60  Aligned_cols=23  Identities=9%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-..
T Consensus        51 ~~~~~l~~L~p~t~Y~~~V~a~~   73 (102)
T d2cuha1          51 AVDYPLHDLVLHTNYTATVRGLR   73 (102)
T ss_dssp             CSEEEECSCCSSSEEEEEEEEEE
T ss_pred             eeeEEEccEEeeEEEEEEEEEEe
Confidence            35899999999999999997664

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=0.68  Score=25.23  Aligned_cols=24  Identities=21%  Similarity=0.402  Sum_probs=20.6

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...|.|.||.|...|.+.|.-...
T Consensus        53 ~~~~~i~~L~p~t~Y~~~V~a~~~   76 (90)
T d1fnha2          53 VRSYTITGLQPGTDYKIYLYTLND   76 (90)
T ss_dssp             CSEEEEESCCTTCEEEEEEEEEET
T ss_pred             ccEEEeCCCCCCcEEEEEEEEEeC
Confidence            568999999999999999877653

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.91  E-value=0.4  Score=26.82  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=20.3

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...|.|+||+|...|.+.|.-.-.
T Consensus        58 ~~~~~i~~L~p~t~Y~~~V~a~n~   81 (98)
T d1x5la1          58 TTRATVSGLKPGTRYVFQVRARTS   81 (98)
T ss_dssp             SSEEEECSCCTTCEEEECEEEEET
T ss_pred             ceEEEECCCCCCCEEEEEEEEEcC
Confidence            468999999999999998876544

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.64  E-value=0.49  Score=26.01  Aligned_cols=21  Identities=10%  Similarity=0.131  Sum_probs=18.1

Q ss_pred             ceEEEecCCCCCCeeEEEEEE
Q psy17633         14 LRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        14 l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      ..|.|+||+|...|.+.|.-.
T Consensus        65 ~~~~i~~L~p~t~Y~~~V~A~   85 (95)
T d2ibga1          65 RSFKIAPLETATMYEFKLQSF   85 (95)
T ss_dssp             CEEEECSCCTTCEEEEEEEEE
T ss_pred             eEEEEeeccCCeEEEEEEEEE
Confidence            478999999999999988754

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=82.56  E-value=0.86  Score=24.72  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...|.|.||.|...|.+.|.-.-.
T Consensus        52 ~~~~~i~~L~p~t~Y~~~V~a~~~   75 (88)
T d1qr4a2          52 KTRTKLVKLVPGVDYNVNIISVKG   75 (88)
T ss_dssp             CCEEEECSCCSSCEEEEEEEEEET
T ss_pred             ccEEEECCCCCCCEEEEEEEEEeC
Confidence            468999999999999999877654

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=82.39  E-value=0.5  Score=25.93  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||+|...|.+.|.-.-
T Consensus        50 ~t~~~~~~L~p~t~Y~~~V~A~n   72 (88)
T d1k85a_          50 GTTATISGLAADTSYTFTVKAKD   72 (88)
T ss_dssp             SSEEEECCCCSSCEEEEEEEEEE
T ss_pred             CCEEEECCCCCCCEEEEEEEEEE
Confidence            45799999999999998887654

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.07  E-value=0.74  Score=25.65  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=19.3

Q ss_pred             CcceEEEecCCCCCCeeEEEEEE
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      ....|.|+||.|...|.+.|.-.
T Consensus        62 ~~~~~~i~~L~p~t~Y~~~V~A~   84 (103)
T d1x5ga1          62 SSHSYTINGLKKYTEYSFRVVAY   84 (103)
T ss_dssp             CSSEEEECSCCTTCEEEEEEEEE
T ss_pred             cccEEecCCCCCCCEEEEEEEEE
Confidence            34579999999999999988654

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.02  E-value=0.85  Score=24.84  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             cceEEEecCCCCCCeeEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      ...|.|.||.|...|.+.|.-.
T Consensus        53 ~~~~~i~~L~p~t~Y~~~V~A~   74 (93)
T d1x4xa1          53 GLSYEIKGLSPATTYYCRVQAL   74 (93)
T ss_dssp             CSEEEEESCCSSCEEEEEEEEE
T ss_pred             ccEEEEcccceeeEEEEEEEEE
Confidence            4678999999999999988755

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=0.58  Score=26.89  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             CcceEEEecCCCCCCeeEEEEEE
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      +...|.|.||.|...|.+.|.-.
T Consensus        70 ~~~~~~v~~L~p~t~Y~frV~A~   92 (117)
T d1uema_          70 KTTLYTVRGLRPNTIYLFMVRAI   92 (117)
T ss_dssp             CSSEEEECSCCTTCEEEEEEEEE
T ss_pred             ccccceECCCCCCCEEEEEEEEE
Confidence            45689999999999999888765

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.78  E-value=0.8  Score=24.83  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.2

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        55 ~~~~~i~~L~p~t~Y~~~V~A~n   77 (95)
T d2djsa1          55 TNTARIDGLRPGMVYVVQVRART   77 (95)
T ss_dssp             SSEEEEESCCTTCEEEEEEEEEE
T ss_pred             ccEEEEeecCCccEEEEEEEEEc
Confidence            35789999999999999987653

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.70  E-value=0.63  Score=25.43  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=19.1

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...|.|.||.|...|.+.|.-.-
T Consensus        54 ~~~~~i~~L~p~t~Y~~~V~A~n   76 (94)
T d2dn7a1          54 DQHFTVTGLHKGTTYIFRLAAKN   76 (94)
T ss_dssp             CCEEEEECCCTTCEEEEEEEEEE
T ss_pred             ccEEEEEccCCeeEEEEEEEEEc
Confidence            45789999999999998887543

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=0.86  Score=25.90  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.2

Q ss_pred             cceEEEecCCCCCCeeEEEEEEEc
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVPV   36 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~~   36 (99)
                      ...|.|.||.|...|.+.|.-.-.
T Consensus        79 ~~~~~i~~L~p~t~Y~~~V~A~n~  102 (125)
T d1uena_          79 KTHGMLPGLEPFSHYTLNVRVVNG  102 (125)
T ss_dssp             CSEEEEESCCSSCEEEEEEEEEES
T ss_pred             ccEEEECCCCCCCEEEEEEEEEeC
Confidence            457999999999999988877653

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.37  E-value=0.39  Score=27.29  Aligned_cols=28  Identities=11%  Similarity=0.075  Sum_probs=23.7

Q ss_pred             CCcceEEEecCCCCCCeeEEEEEEEccC
Q psy17633         11 FPTLRVSFTGLRPDQRYAVLMDIVPVDN   38 (99)
Q Consensus        11 FP~l~~~vsGLdp~~~Y~i~l~~~~~d~   38 (99)
                      -+.+.+.+.||+|...|.+.|.-.....
T Consensus        65 ~~~~~~~~~~L~p~t~Y~~rVRa~~~~g   92 (114)
T d2gysa2          65 TSQATLGPEHLMPSSTYVARVRTRLAPG   92 (114)
T ss_dssp             SSEEEECTTTCCTTCEEEEEEEEEECTT
T ss_pred             CceEEEEeCCCCCCcEEEEEEEEEeCCC
Confidence            4667888999999999999999887654

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=0.78  Score=25.43  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             CCcceEEEecCCCCCCeeEEEEEE
Q psy17633         11 FPTLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        11 FP~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      -+...+.|.||.|...|.+.|.-.
T Consensus        57 ~~~~~~~i~~L~p~t~Y~frV~A~   80 (104)
T d1bpva_          57 ILENEFTVSGLTEDAAYEFRVIAK   80 (104)
T ss_dssp             CCSSEEEECSCCSSCCEEEEEEEE
T ss_pred             cceeEEEEcCCCCCCEEEEEEEEE
Confidence            356789999999999999888654

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.50  E-value=0.63  Score=25.56  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             cceEEEecCCCCCCeeEEEEEEE
Q psy17633         13 TLRVSFTGLRPDQRYAVLMDIVP   35 (99)
Q Consensus        13 ~l~~~vsGLdp~~~Y~i~l~~~~   35 (99)
                      ...+.|.||.|...|.+.|...-
T Consensus        60 ~~~~~i~~L~p~t~Y~~~V~a~n   82 (100)
T d1x5ja1          60 TLSYLVTGLKPNTLYEFSVMVTK   82 (100)
T ss_dssp             SSEEEEESCCTTCEECCEEEEEC
T ss_pred             ccEEEECCCCCCCEEEEEEEEEe
Confidence            46899999999999999887754

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.32  E-value=0.83  Score=25.51  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=19.6

Q ss_pred             CcceEEEecCCCCCCeeEEEEEE
Q psy17633         12 PTLRVSFTGLRPDQRYAVLMDIV   34 (99)
Q Consensus        12 P~l~~~vsGLdp~~~Y~i~l~~~   34 (99)
                      +...|.|.||+|...|.+.|.-.
T Consensus        66 ~~~~~~i~~L~p~t~Y~~rV~A~   88 (107)
T d2crma1          66 ATREHLCDRLNPGCFYRLRVYCI   88 (107)
T ss_dssp             SCSEEEECSCCTTSCEEEEEEEE
T ss_pred             CccEEEEeccCCCCEEEEEEEEE
Confidence            46789999999999999888654