Diaphorina citri psyllid: psy1775


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
MICDVTNFINYRLRKLAENCVPETWAFHPILKKGTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPPANTHRNRAKIDEEYMSLMAELGEGPPPDKRQRDNDSYRKNNTSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARPRARFPPGADFILNG
cccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccCEEEEEEEEcccccccccccccEEcccccHHHHHHHHHcccEEEEcccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHcccccccccccccccccc
*ICDVTNFINYRLRKLAENCVPETWAFHPILKKGTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPPANTHRNRAKIDEEYMSLMAELGE*******************************************RTRKKLEEERHDLIQKM***************PVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIII*************************LHAYVTAHNPENVKKAVDRLVCLVSARPRARFPPG*******
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MICDVTNFINYRLRKLAENCVPETWAFHPILKKGTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPPANTHRNRAKIDEEYMSLMAELGEGPPPDKRQRDNDSYRKNNTSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARPRARFPPGADFILNG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Splicing factor 1 Necessary for the ATP-dependent first step of spliceosome assembly. Binds to the intron branch point sequence (BPS) 5'-UACUAAC-3' of the pre-mRNA. May act as transcription repressor.confidentQ15637
Branchpoint-bridging protein Necessary for the splicing of pre-mRNA. Has a role in the recognition of the branch site (5'-UACUAAC-3'), the pyrimidine tract and the 3'-splice site at the 3'-end of introns.confidentP0CO44
Branchpoint-bridging protein Necessary for the splicing of pre-mRNA.confidentQ54BM5

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0071011 [CC]precatalytic spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0007476 [BP]imaginal disc-derived wing morphogenesisprobableGO:0048563, GO:0048569, GO:0035107, GO:0009887, GO:0035220, GO:0009791, GO:0035120, GO:0002165, GO:0032501, GO:0009653, GO:0007275, GO:0044699, GO:0007472, GO:0007552, GO:0048513, GO:0032502, GO:0048707, GO:0009886, GO:0035114, GO:0008150, GO:0044767, GO:0044707, GO:0007444, GO:0048856, GO:0007560, GO:0048731, GO:0048736, GO:0048737
GO:0022008 [BP]neurogenesisprobableGO:0032502, GO:0048856, GO:0044707, GO:0007399, GO:0048869, GO:0030154, GO:0008150, GO:0032501, GO:0044763, GO:0048731, GO:0009987, GO:0007275, GO:0044699
GO:0042127 [BP]regulation of cell proliferationprobableGO:0008150, GO:0065007, GO:0050789, GO:0050794
GO:0002121 [BP]inter-male aggressive behaviorprobableGO:0050896, GO:0007610, GO:0008150, GO:0002118, GO:0051705, GO:0051704
GO:0060041 [BP]retina development in camera-type eyeprobableGO:0032502, GO:0032501, GO:0044707, GO:0007423, GO:0048856, GO:0044767, GO:0048513, GO:0001654, GO:0048731, GO:0008150, GO:0043010, GO:0007275, GO:0044699
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0048610 [BP]cellular process involved in reproductionprobableGO:0009987, GO:0008150, GO:0000003
GO:0008406 [BP]gonad developmentprobableGO:0032502, GO:0007548, GO:0032501, GO:0048608, GO:0000003, GO:0044707, GO:0022414, GO:0061458, GO:0048856, GO:0045137, GO:0044767, GO:0003006, GO:0048513, GO:0008150, GO:0048731, GO:0007275, GO:0044699
GO:0003723 [MF]RNA bindingprobableGO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1K1G, chain A
Confidence level:very confident
Coverage over the Query: 194-301
View the alignment between query and template
View the model in PyMOL
Template: 3KRM, chain A
Confidence level:very confident
Coverage over the Query: 163-242,257-289
View the alignment between query and template
View the model in PyMOL
Template: 4FXW, chain B
Confidence level:confident
Coverage over the Query: 118-188
View the alignment between query and template
View the model in PyMOL
Template: 2IHX, chain A
Confidence level:confident
Coverage over the Query: 42-86
View the alignment between query and template
View the model in PyMOL