Diaphorina citri psyllid: psy18165


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccc
******Q***SLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSK**********************DTHSLVAAVGMGRG*****************************************************TNIKAAA**HP***
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MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Mediator of RNA polymerase II transcription subunit 8 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Required for activated transcription of the MtnA and MtnB genes.very confidentA1ZBT5
Mediator of RNA polymerase II transcription subunit 8 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.very confidentQ7Q6D6
Mediator of RNA polymerase II transcription subunit 8 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins.confidentQ08BU1

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0016592 [CC]mediator complexprobableGO:0043234, GO:0044446, GO:0032991, GO:0005575, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422, GO:0043231

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 4H63, chain H
Confidence level:confident
Coverage over the Query: 3-88,103-152,169-191
View the alignment between query and template
View the model in PyMOL