Psyllid ID: psy18165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccHHHHHHHcccccEEccHHccHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MQREEKQLESSLESVVMKLNEIKSQLVGMLFKidhdrdslnwptfldnFALLSGQFSAIAKVlshdktppirnltvlplilnpeREEELLRLTegrvpafthdlvpdylrtkqepdvEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWeseagarggtgqtssltDTHSLVAAVGMgrglkmimpgpgapvgpgmmvapggpgrpvgpgpgmpmgpggqpmgmmgknpsgikTNIKAAaaihpysr
Flexible Loop (DISEMBL)
mqreekqlesSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVlshdktppirnltvlplilnPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESeagarggtgqtssltdTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKNPSGIKTNIKaaaaihpysr
Low Complexity Region (SEG)
MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVlplilnpereeellrlteGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMImpgpgapvgpgmmvapggpgrpvgpgpgmpmgpggqpmgmmgKNPSGIKTNIKAAAAIHPYSR
Disordered region (IsUnstruct)
**************VVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQ**DVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSK**************************LVAAVGMG*********************************************************************
Disordered Region (DISOPRED)
******Q***SLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDV*******************QKQAATFNKVITHVLD**************************DTHSLVAAVGMGRG*****************************************************TNIKAAA**HP***
Disordered Region (DISEMBL)
************ESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKARE*****************LTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR
Disordered Region (DISPRO)
****EKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAG********SSLTDTHSLVAAVGMGRGLK***********************************************S*I****K**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
A1ZBT5	252	Mediator of RNA polymeras	yes	N/A	0.972	1.0	0.509	2e-73
Q7Q6D6	249	Mediator of RNA polymeras	yes	N/A	0.942	0.979	0.509	8e-69
Q16RR7	250	Mediator of RNA polymeras	N/A	N/A	0.945	0.98	0.532	1e-65
Q08BU1	267	Mediator of RNA polymeras	yes	N/A	0.972	0.943	0.470	1e-61
Q5HZZ6	268	Mediator of RNA polymeras	N/A	N/A	0.972	0.940	0.469	2e-61
Q6DD30	269	Mediator of RNA polymeras	N/A	N/A	0.972	0.936	0.467	4e-61
Q9D7W5	268	Mediator of RNA polymeras	yes	N/A	0.972	0.940	0.465	7e-60
Q96G25	268	Mediator of RNA polymeras	yes	N/A	0.972	0.940	0.458	1e-57
Q6NYT1	267	Mediator of RNA polymeras	yes	N/A	0.972	0.943	0.446	2e-54
P0C5E6	294	Mediator of RNA polymeras	N/A	N/A	0.872	0.768	0.263	2e-14

>sp|A1ZBT5|MED8_DROME Mediator of RNA polymerase II transcription subunit 8 OS=Drosophila melanogaster GN=MED8 PE=2 SV=1

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/259 (50%), Positives = 188/259 (72%), Gaps = 7/259 (2%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQR+EK  E +L++V+ +LN++K  ++ M+ K++ + +++NWPTFLDNFA++S   + + 
Sbjct: 1   MQRDEKLFELTLDTVLQRLNDLKLAVLSMIQKLELEYETINWPTFLDNFAIISSHLTGLT 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+L+ ++ PP+RN TVLPL+++ +R++ L+ +TEGRVP F+HD+VPDYLRT+ +P  E K
Sbjct: 61  KILAKEQCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVFSHDIVPDYLRTRPDPITEQK 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
           ++Q E KAA+L+ DAA KQ   +NKV++HVLD+VSKAREEWE E+ +R G  QTSS+ DT
Sbjct: 121 MLQNEQKAANLTNDAAMKQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADT 180

Query: 181 HSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPMGMMGKN 240
             LVAAVGMG+GLK+   GP    GPGMMV P    R   P  G  M PG      +GK 
Sbjct: 181 QLLVAAVGMGKGLKLTNYGP----GPGMMVPPS--IRAPSPMGGPAMSPGNV-QQQLGKA 233

Query: 241 PSGIKTNIKAAAAIHPYSR 259
           PS +KTNIK+A  +HP+SR
Sbjct: 234 PSAVKTNIKSANQVHPFSR 252

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Required for activated transcription of the MtnA and MtnB genes.
Drosophila melanogaster (taxid: 7227)

>sp|Q7Q6D6|MED8_ANOGA Mediator of RNA polymerase II transcription subunit 8 OS=Anopheles gambiae GN=MED8 PE=3 SV=2

 Score =  260 bits (664), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 133/261 (50%), Positives = 179/261 (68%), Gaps = 17/261 (6%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQL+  LE+V+ +LN++K  +  M+ +++ + +++NWPTFLDNFAL+S   + + 
Sbjct: 1   MQREEKQLDMLLEAVLNRLNDLKHSIGVMIHRLETEYETINWPTFLDNFALISSHLTGLM 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+LS +   P+RNLTVLPL+L PER+E LL+LTEGRVP F+HDL PDYLRTK +P  E +
Sbjct: 61  KILSTEIGTPLRNLTVLPLMLTPERDEALLQLTEGRVPIFSHDLAPDYLRTKPDPGAESR 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
               E KA +L+ +A+ KQ A +NKVI+HV DI+SKA+E+WE+E+  R G  QTSS+ DT
Sbjct: 121 QAAHEAKANNLTVEASMKQVAQYNKVISHVWDIISKAKEDWENESSTRPGIQQTSSMADT 180

Query: 181 HSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAP----GGPGRPVGPGPGMPMGPGGQPMGM 236
            +LVAAVG+G GL   +   G P G G+M+ P    G P   V P    P          
Sbjct: 181 QALVAAVGLGNGLTAPV---GPPTGAGVMIPPAIRQGSPMSAVSPSGNAP---------- 227

Query: 237 MGKNPSGIKTNIKAAAAIHPY 257
           MGK PSGIKTNIK+A  +HPY
Sbjct: 228 MGKMPSGIKTNIKSANQVHPY 248

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q16RR7|MED8_AEDAE Mediator of RNA polymerase II transcription subunit 8 OS=Aedes aegypti GN=MED8 PE=3 SV=1

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/261 (53%), Positives = 184/261 (70%), Gaps = 16/261 (6%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQ++  LE+V+ +LN++K  +  M+ +++ + +++NWPTFLDNFAL+SG  + ++
Sbjct: 1   MQREEKQMDMLLEAVLNRLNDLKHSIGAMIHRLETEYETINWPTFLDNFALISGHLTGLS 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+LS +   P+RNLTVLPL+L PER+E LL+LTEGR+P F+HDLVPDYLRTK +P  E +
Sbjct: 61  KILSSEIGTPLRNLTVLPLLLTPERDEALLQLTEGRIPIFSHDLVPDYLRTKPDPGAESR 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
           +   E KA +L  D A KQ A +NKVI+HV DIVSKAREEW++EA +R G  QTSSL DT
Sbjct: 121 MAAHEAKANNLQPDTAAKQVAQYNKVISHVWDIVSKAREEWDTEASSRPGIQQTSSLADT 180

Query: 181 HSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAP----GGPGRPVGPGPGMPMGPGGQPMGM 236
            +LVAAVG+G GL M + GPG     G+M+ P      P   V PG G        P+G 
Sbjct: 181 QALVAAVGVGNGLTMPV-GPGGVPNAGIMIPPAIRQASPMSAVSPGAG--------PLGK 231

Query: 237 MGKNPSGIKTNIKAAAAIHPY 257
           M   PSGIKTNIK+A  +HPY
Sbjct: 232 M---PSGIKTNIKSANQVHPY 249

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q08BU1|MED8_XENTR Mediator of RNA polymerase II transcription subunit 8 OS=Xenopus tropicalis GN=med8 PE=2 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/274 (47%), Positives = 186/274 (67%), Gaps = 22/274 (8%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQLE+ L++++ ++++IK+ LVG + K++++ D L WP+ LD+FALLSGQ + + 
Sbjct: 1   MQREEKQLEACLDALISQVSDIKNSLVGFIHKLENEYDRLTWPSVLDSFALLSGQLNTLN 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           KVL ++KTP +RN  ++PL+L+P+R+EE++RLTEGRVP F+H++VPD+LRTK +PDVE  
Sbjct: 61  KVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEEL 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
             QL  +AA ++ +AAQKQ  + NK+ +++LD +SK  EE ESE G+     QT + TDT
Sbjct: 121 EKQLSAEAARITSEAAQKQVQSMNKMCSNLLDKISK--EERESELGSLRQNKQTFNPTDT 178

Query: 181 HSLVAAVGMGRGLKMIM-PGPGAPVGPG------MMVAPGGPGRPVGPGP--------GM 225
           ++LVAAV  G+GL     PG G P+ PG      M+    G   P+   P        G+
Sbjct: 179 NALVAAVAFGKGLSNRRPPGQGGPMAPGQTGASSMLPNATGMQVPMSLPPNQQQQHMAGV 238

Query: 226 PMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
            M  G QP    GK PS IKTNIK +A++HPY R
Sbjct: 239 SMSQGSQP----GKMPSSIKTNIK-SASMHPYQR 267

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins.

Xenopus tropicalis (taxid: 8364)

>sp|Q5HZZ6|MED8A_XENLA Mediator of RNA polymerase II transcription subunit 8-A OS=Xenopus laevis GN=med8-a PE=2 SV=1

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 184/275 (66%), Gaps = 23/275 (8%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQLE+ L++++ ++++IK+ LVG + K++++ D L WP+ LD+FALLSGQ + + 
Sbjct: 1   MQREEKQLEACLDALISQVSDIKNSLVGFIHKLENEFDRLTWPSVLDSFALLSGQLNTLN 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           KVL ++KTP +RN  ++PL+L+P+R+EE++RLTEGRVP F+H++VPD+LRTK +PDVE  
Sbjct: 61  KVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEEL 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
             QL  +AA ++ +AAQKQ  + NK+ +++LD +SK  EE ESE G+     QT + TDT
Sbjct: 121 EKQLSAEAARITTEAAQKQVQSMNKMCSNLLDKISK--EERESELGSLRQNKQTFNPTDT 178

Query: 181 HSLVAAVGMGRGLKMIM-PGPGAPVGPGMMVA----PGGPGRPVGPGP-----------G 224
           ++LVAAV  G+GL     PG G P+ PG   A    P   G    P             G
Sbjct: 179 NALVAAVAFGKGLSNRRPPGQGGPMAPGQTGASGMLPSAAGMQQVPMSLQSNQQQQHMAG 238

Query: 225 MPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
           + M  G QP    GK PS IKTNIK +A++HPY R
Sbjct: 239 VSMSQGNQP----GKMPSSIKTNIK-SASMHPYQR 268

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins.

Xenopus laevis (taxid: 8355)

>sp|Q6DD30|MED8B_XENLA Mediator of RNA polymerase II transcription subunit 8-B OS=Xenopus laevis GN=med8-b PE=2 SV=1

 Score =  234 bits (597), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/276 (46%), Positives = 183/276 (66%), Gaps = 24/276 (8%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQLE+ L++++ ++++IK+ LVG + K++++ D L WP+ LD+FALLSGQ + + 
Sbjct: 1   MQREEKQLEACLDALISQVSDIKNSLVGFIHKLENEYDRLTWPSVLDSFALLSGQLNTLN 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           KVL ++KTP +RN  ++PL+L+P+R+EE++RLTEGRVP F+H++VPD+LRTK +PDVE  
Sbjct: 61  KVLKNEKTPLLRNQVIIPLLLSPDRDEEIMRLTEGRVPVFSHEVVPDHLRTKPDPDVEEL 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
             Q+   A  L+ +AAQKQ  + NK+ +++LD +SK  EE ESE G+     QT + TDT
Sbjct: 121 EKQISADATRLTSEAAQKQVQSMNKMCSNLLDKISK--EERESELGSLRQNKQTFNPTDT 178

Query: 181 HSLVAAVGMGRGLKMIM-PGPGAPVGPGMMVA----PGGPGRPVGPGP------------ 223
           ++LVAAV  G+GL     PG G P+ PG   A    PG  G    P              
Sbjct: 179 NALVAAVAFGKGLSNRRPPGQGGPMAPGQTGASGMIPGAAGMQQVPMSLSQNQQQQQHMA 238

Query: 224 GMPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
           G+ M  G QP    GK PS IKTNIK +A++HPY R
Sbjct: 239 GVSMSQGSQP----GKMPSSIKTNIK-SASMHPYQR 269

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins.

Xenopus laevis (taxid: 8355)

>sp|Q9D7W5|MED8_MOUSE Mediator of RNA polymerase II transcription subunit 8 OS=Mus musculus GN=Med8 PE=2 SV=1

 Score =  230 bits (587), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 181/275 (65%), Gaps = 23/275 (8%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQLE+SL++++ ++ ++K+ L   ++K++++ D L WP+ LD+FALLSGQ + + 
Sbjct: 1   MQREEKQLEASLDALLNQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           KVL H+KTP  RN  ++PL+L+P+R+E+L+R TEGRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61  KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
             QL   AA +  DAAQKQ  + NK+ +++L+ +SK  EE ESE+G      QT +  DT
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPGDT 178

Query: 181 HSLVAAVGMGRGLKMIMP----GPGAPVGPGM-MVAPGGPGRPVGPGPGMP--------- 226
           ++LVAAV  G+GL    P    GPG P  PG   +  G  G P    PG P         
Sbjct: 179 NALVAAVAFGKGLSNWRPSGSSGPGQPGQPGAGTILAGASGLPQVQMPGAPNQQQPMLSG 238

Query: 227 --MGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
             M   GQP    GK PSGIKTNIK +A++HPY R
Sbjct: 239 VQMAQAGQP----GKMPSGIKTNIK-SASMHPYQR 268

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|Q96G25|MED8_HUMAN Mediator of RNA polymerase II transcription subunit 8 OS=Homo sapiens GN=MED8 PE=1 SV=2

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/275 (45%), Positives = 178/275 (64%), Gaps = 23/275 (8%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQLE+SL++++ ++ ++K+ L   + K++++   L WP+ LD+FALLSGQ + + 
Sbjct: 1   MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           KVL H+KTP  RN  ++PL+L+P+R+E+L+R TEGRVP F+H++VPD+LRTK +P+VE +
Sbjct: 61  KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
             QL   AA +  DAAQKQ  + NK+ +++L+ +SK  EE ESE+G      QT + TDT
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPTDT 178

Query: 181 HSLVAAVGMGRGLKMIMP----GPGAPVGPGMMVAPGG---------PGRPVGPGP---G 224
           ++LVAAV  G+GL    P    GPG    PG      G          G P    P   G
Sbjct: 179 NALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSG 238

Query: 225 MPMGPGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
           + M   GQP    GK PSGIKTNIK +A++HPY R
Sbjct: 239 VQMAQAGQP----GKMPSGIKTNIK-SASMHPYQR 268

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q6NYT1|MED8_DANRE Mediator of RNA polymerase II transcription subunit 8 OS=Danio rerio GN=med8 PE=2 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/271 (44%), Positives = 175/271 (64%), Gaps = 19/271 (7%)

Query: 2   QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
           QREEKQLE+ LES+V ++  +K  L   ++K++++ D L WP+ LDNFAL+SGQ + I K
Sbjct: 3   QREEKQLEAFLESLVARVAHLKGSLQSFIYKLENEYDRLTWPSVLDNFALISGQLNTINK 62

Query: 62  VLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKL 121
           +L ++KTP  ++  ++PL+L+P+R+EEL +LTE RVP F+H++VPD+LRTK +P+VE + 
Sbjct: 63  LLRNEKTPSYKSQVIIPLLLSPDRDEELAKLTEHRVPVFSHEIVPDHLRTKPDPEVEEQE 122

Query: 122 IQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTH 181
             L  +AA +  + AQKQ    NK+ +++L+ ++  RE+ +SE  A      + +  DT+
Sbjct: 123 KHLSAEAARIGPEVAQKQIQALNKLCSNLLEKLNNPREDRDSETSALRQNKPSFNPADTN 182

Query: 182 SLVAAVGMGRGL-KMIMPGPGAPVGPG---MMVAP--------GGPGRPVG-PGPGMPMG 228
           +LVAAVG G+GL K   PGP AP  PG   M   P        G  G   G  GP  P  
Sbjct: 183 ALVAAVGFGKGLSKCRPPGPVAPGHPGQPMMQTGPTLQQVTIAGASGHQAGMSGPVAPQQ 242

Query: 229 PGGQPMGMMGKNPSGIKTNIKAAAAIHPYSR 259
           P GQP    GK PS IKTNIK +A++HPY+R
Sbjct: 243 P-GQP----GKIPSNIKTNIK-SASMHPYNR 267

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. May play a role as a target recruitment subunit in E3 ubiquitin-protein ligase complexes and thus in ubiquitination and subsequent proteasomal degradation of target proteins.

Danio rerio (taxid: 7955)

>sp|P0C5E6|MED8_CAEBR Mediator of RNA polymerase II transcription subunit 8 OS=Caenorhabditis briggsae GN=mdt-8 PE=3 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 13/239 (5%)

Query: 2   QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
           Q E +++  + + ++ ++ + K  +  +L  +D  ++   WP  L+ F+ L+   +++  
Sbjct: 17  QSEPEKIGQATDMMIKRVTDAKKMIEELLQMLDL-QEKCPWPDMLEKFSSLASAMASLQT 75

Query: 62  VLSHDKTPP--------IRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQ 113
            +     P         +R+  ++P  L  E +E LLR+T+GRV ++ H+LVP+YLRTK 
Sbjct: 76  SVRKSGLPHGHEDHGQFLRSHVLVPQRLQYEPDEALLRVTQGRVFSWNHELVPEYLRTKP 135

Query: 114 EPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQ 173
            P++E++   L+ + ++ + D   KQ A +NK I  +L  +S   +   SEA        
Sbjct: 136 NPEMENEEQMLDMERSAKAPDLVVKQIAAYNKNIEGLLGSLSNI-DRLHSEAIIEKP--- 191

Query: 174 TSSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQ 232
           T S  +T  LV ++ +G  ++ +      P    M  APG  G        M   PG Q
Sbjct: 192 THSREETMKLVKSILLGEAIRTLRTAGAPPTSTPMPAAPGSAGPSQSGSQVMNQAPGMQ 250

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
270010446	294	hypothetical protein TcasGA2_TC009839 [T	0.980	0.863	0.609	8e-85
91086795	283	PREDICTED: similar to mediator complex,	0.980	0.897	0.609	1e-84
242021017	249	conserved hypothetical protein [Pediculu	0.957	0.995	0.630	3e-84
383848113	258	PREDICTED: mediator of RNA polymerase II	0.969	0.972	0.570	1e-83
307170762	258	Mediator of RNA polymerase II transcript	0.969	0.972	0.581	5e-83
380029017	258	PREDICTED: mediator of RNA polymerase II	0.969	0.972	0.589	7e-83
383848111	261	PREDICTED: mediator of RNA polymerase II	0.969	0.961	0.563	6e-82
328793569	263	PREDICTED: mediator of RNA polymerase II	0.965	0.950	0.582	6e-82
340720811	261	PREDICTED: mediator of RNA polymerase II	0.965	0.957	0.569	1e-79
332017622	258	Mediator of RNA polymerase II transcript	0.969	0.972	0.555	6e-79

>gi|270010446|gb|EFA06894.1| hypothetical protein TcasGA2_TC009839 [Tribolium castaneum]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 203/261 (77%), Gaps = 7/261 (2%)

Query: 2   QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
           QREEKQLESSL+S++ ++N++KS +  M++K++++ ++LNWPTFLDN+AL+SGQ ++++K
Sbjct: 38  QREEKQLESSLDSIIQRVNDLKSSIASMIYKVENEYETLNWPTFLDNYALMSGQLTSLSK 97

Query: 62  VLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKL 121
           VLSHDK P +RNLTVLPL+L+PER+E+L ++TE RV  F HDLVPDYLRTK EP  E+K+
Sbjct: 98  VLSHDKCPTLRNLTVLPLMLSPERDEQLAQMTEHRVTTFAHDLVPDYLRTKLEPLAENKM 157

Query: 122 IQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTH 181
           +QLEHKA++LSY+ AQKQ A + KV++HV ++VSKAREEWE E+ ARG T Q SS+ DTH
Sbjct: 158 MQLEHKASTLSYENAQKQIAAYQKVVSHVWELVSKAREEWEVESSARGSTQQNSSVADTH 217

Query: 182 SLVAAVGMGRGLKM-IMP-GPGAPVGPGMMVAPGGPGRPVG-PGPGMPMGPGGQPMGMMG 238
           SLVAAVGMG+GLKM   P G   P   GMMV P   GRP G PG G  M P  Q M  M 
Sbjct: 218 SLVAAVGMGKGLKMGANPNGQPNPTSGGMMVPPQ--GRPGGTPGQGQ-MPPSTQTM-TMN 273

Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
           K PS IKTNIK+A  IHPY R
Sbjct: 274 KAPSAIKTNIKSATQIHPYGR 294

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086795|ref|XP_973374.1| PREDICTED: similar to mediator complex, subunit, putative [Tribolium castaneum]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 203/261 (77%), Gaps = 7/261 (2%)

Query: 2   QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
           QREEKQLESSL+S++ ++N++KS +  M++K++++ ++LNWPTFLDN+AL+SGQ ++++K
Sbjct: 27  QREEKQLESSLDSIIQRVNDLKSSIASMIYKVENEYETLNWPTFLDNYALMSGQLTSLSK 86

Query: 62  VLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKL 121
           VLSHDK P +RNLTVLPL+L+PER+E+L ++TE RV  F HDLVPDYLRTK EP  E+K+
Sbjct: 87  VLSHDKCPTLRNLTVLPLMLSPERDEQLAQMTEHRVTTFAHDLVPDYLRTKLEPLAENKM 146

Query: 122 IQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTH 181
           +QLEHKA++LSY+ AQKQ A + KV++HV ++VSKAREEWE E+ ARG T Q SS+ DTH
Sbjct: 147 MQLEHKASTLSYENAQKQIAAYQKVVSHVWELVSKAREEWEVESSARGSTQQNSSVADTH 206

Query: 182 SLVAAVGMGRGLKM-IMP-GPGAPVGPGMMVAPGGPGRPVG-PGPGMPMGPGGQPMGMMG 238
           SLVAAVGMG+GLKM   P G   P   GMMV P   GRP G PG G  M P  Q M  M 
Sbjct: 207 SLVAAVGMGKGLKMGANPNGQPNPTSGGMMVPPQ--GRPGGTPGQGQ-MPPSTQTM-TMN 262

Query: 239 KNPSGIKTNIKAAAAIHPYSR 259
           K PS IKTNIK+A  IHPY R
Sbjct: 263 KAPSAIKTNIKSATQIHPYGR 283

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021017|ref|XP_002430943.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516163|gb|EEB18205.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/260 (63%), Positives = 209/260 (80%), Gaps = 12/260 (4%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQLE++L++++ +++++KS L  M+FKI+++ +++NWPTFLDNFALLSG  + ++
Sbjct: 1   MQREEKQLENALDAIMQRISDLKSSLAAMIFKIENEYETINWPTFLDNFALLSGHLTTLS 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+L  DKTPP+RNLTVLPL+L+PER+EELLRLTE RVPAFTHDLVPDYLRTK +P+VE K
Sbjct: 61  KMLGADKTPPLRNLTVLPLMLSPERDEELLRLTENRVPAFTHDLVPDYLRTKPDPEVEQK 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
           +IQLE KAA+LS + AQKQ A ++KV+ H+ +IVSKAREEWE+E  +R G  QTSS+ DT
Sbjct: 121 MIQLELKAANLSNETAQKQVAAYSKVVNHIYEIVSKAREEWETETSSRAGQTQTSSMADT 180

Query: 181 HSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPG-PGMPMGPGGQPMGMMGK 239
           H+LVAAVGMG+GLK +   PGAP  PGMMVAP GPGRP GP      MGP G      GK
Sbjct: 181 HALVAAVGMGKGLKAM---PGAP--PGMMVAPVGPGRPPGPSQQAQQMGPIG------GK 229

Query: 240 NPSGIKTNIKAAAAIHPYSR 259
            PS IKTNIK+  ++HPYSR
Sbjct: 230 APSTIKTNIKSGGSMHPYSR 249

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848113|ref|XP_003699696.1| PREDICTED: mediator of RNA polymerase II transcription subunit 8-like isoform 2 [Megachile rotundata]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/263 (57%), Positives = 196/263 (74%), Gaps = 12/263 (4%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQL+S+LE+++MK+N++K+ +  M+FK++H+ ++LNWP FLDNFAL+SG  ++++
Sbjct: 1   MQREEKQLDSALEAIIMKVNDLKTAIAAMIFKLEHEYETLNWPNFLDNFALISGHLTSLS 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+L HDK P +RNLTVLPL L+PE++E+LLRLTEGR+  F HDLVPDYLRTK EP  E K
Sbjct: 61  KILGHDKAPNLRNLTVLPLRLSPEKDEDLLRLTEGRISTFAHDLVPDYLRTKVEPQAEQK 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
           ++QLE KAA+L+Y+ + KQ   + KVI+HV DI +KAREEWESE+G+R    QTSS  DT
Sbjct: 121 MMQLEAKAANLNYETSHKQVTQYTKVISHVWDIANKAREEWESESGSRAAQAQTSSTADT 180

Query: 181 HSLVAAVGMGRGLK-----MIMPGPGAPVGPGMMVA-PGGPGRPVGPGPGMPMGPGGQPM 234
           H+LVAAVG+G+GLK     M+  G  + V  GMMV  PG   +  G G       G   M
Sbjct: 181 HALVAAVGIGKGLKSDSVPMVQSGVNS-VSSGMMVGRPGSQQQNSGQGT-----LGNSSM 234

Query: 235 GMMGKNPSGIKTNIKAAAAIHPY 257
           G MGK PS IKTNIKAA+ IHPY
Sbjct: 235 GQMGKAPSTIKTNIKAASQIHPY 257

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170762|gb|EFN62887.1| Mediator of RNA polymerase II transcription subunit 8 [Camponotus floridanus]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/263 (58%), Positives = 196/263 (74%), Gaps = 12/263 (4%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQL+S+LE+++M++N++K+ +  M+FKI+H+ ++LNWP FLDNFAL+SG  ++++
Sbjct: 1   MQREEKQLDSALEAIIMRVNDLKTAIAAMIFKIEHEYETLNWPNFLDNFALISGHLTSLS 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+L+HDK P +RNLTVLPL L+PE++EELLRLTEGR+P F HDLVPDYLRTK EP  E K
Sbjct: 61  KILAHDKAPNLRNLTVLPLRLSPEKDEELLRLTEGRIPTFAHDLVPDYLRTKLEPQAEQK 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
           ++QLE KAA+++ + + KQ   + KVI HV DI +KAREEWESEAGAR    QTSS  DT
Sbjct: 121 MMQLEAKAANVNIETSHKQLTQYTKVIGHVWDIANKAREEWESEAGARATQAQTSSAADT 180

Query: 181 HSLVAAVGMGRGLK-----MIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQP-M 234
           H+L+AAVGMG+GLK     M+  G  + V  GMMV     GRP         GP G P M
Sbjct: 181 HALLAAVGMGKGLKSDSIQMVQSGVNS-VNNGMMV-----GRPGNQQQTPGQGPMGNPQM 234

Query: 235 GMMGKNPSGIKTNIKAAAAIHPY 257
           G M K PS IKTNIKAA+ IHPY
Sbjct: 235 GQMNKAPSAIKTNIKAASQIHPY 257

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029017|ref|XP_003698179.1| PREDICTED: mediator of RNA polymerase II transcription subunit 8-like [Apis florea]

 Score =  313 bits (801), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 155/263 (58%), Positives = 197/263 (74%), Gaps = 12/263 (4%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQL+S+LE+++M++N++KS +  M+FK++H+ ++LNWP FLDNFAL+SG  ++++
Sbjct: 1   MQREEKQLDSALEAIIMRVNDLKSAIAAMIFKLEHEYETLNWPNFLDNFALISGHLTSLS 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+L HDK P +RNLTVLPL L+PE++EELLRLTEGR+P F HDLVPDYLRTK EP  E K
Sbjct: 61  KILGHDKAPNLRNLTVLPLRLSPEKDEELLRLTEGRIPTFAHDLVPDYLRTKVEPQAEQK 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
           ++QLE KAA+L+Y+ + KQ A + KVI HV DI +KAREEWESEAG+R    QTSS  DT
Sbjct: 121 MMQLEAKAANLNYETSHKQVAQYTKVINHVWDIANKAREEWESEAGSRATQAQTSSTADT 180

Query: 181 HSLVAAVGMGRGLK-----MIMPGPGAPVGPGMMVAPGGPG-RPVGPGPGMPMGPGGQPM 234
           H+LVAAVGMG+GLK     M+  G  + V  GM+V  G PG +   PG G     G   M
Sbjct: 181 HALVAAVGMGKGLKSDSVQMVQSGVNS-VPSGMIV--GRPGNQQQTPGQG---SLGNPSM 234

Query: 235 GMMGKNPSGIKTNIKAAAAIHPY 257
           G M K PS IKTNIKAA  IHPY
Sbjct: 235 GQMTKAPSTIKTNIKAAPQIHPY 257

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848111|ref|XP_003699695.1| PREDICTED: mediator of RNA polymerase II transcription subunit 8-like isoform 1 [Megachile rotundata]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 196/266 (73%), Gaps = 15/266 (5%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQL+S+LE+++MK+N++K+ +  M+FK++H+ ++LNWP FLDNFAL+SG  ++++
Sbjct: 1   MQREEKQLDSALEAIIMKVNDLKTAIAAMIFKLEHEYETLNWPNFLDNFALISGHLTSLS 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+L HDK P +RNLTVLPL L+PE++E+LLRLTEGR+  F HDLVPDYLRTK EP  E K
Sbjct: 61  KILGHDKAPNLRNLTVLPLRLSPEKDEDLLRLTEGRISTFAHDLVPDYLRTKVEPQAEQK 120

Query: 121 LIQLEHKAASLSYDAAQ---KQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSL 177
           ++QLE KAA+L+Y+ +    KQ   + KVI+HV DI +KAREEWESE+G+R    QTSS 
Sbjct: 121 MMQLEAKAANLNYETSHDCNKQVTQYTKVISHVWDIANKAREEWESESGSRAAQAQTSST 180

Query: 178 TDTHSLVAAVGMGRGLK-----MIMPGPGAPVGPGMMVA-PGGPGRPVGPGPGMPMGPGG 231
            DTH+LVAAVG+G+GLK     M+  G  + V  GMMV  PG   +  G G       G 
Sbjct: 181 ADTHALVAAVGIGKGLKSDSVPMVQSGVNS-VSSGMMVGRPGSQQQNSGQGT-----LGN 234

Query: 232 QPMGMMGKNPSGIKTNIKAAAAIHPY 257
             MG MGK PS IKTNIKAA+ IHPY
Sbjct: 235 SSMGQMGKAPSTIKTNIKAASQIHPY 260

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793569|ref|XP_623274.2| PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform 1 [Apis mellifera]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 155/266 (58%), Positives = 198/266 (74%), Gaps = 16/266 (6%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQL+S+LE+++M++N++KS +  M+FK++H+ ++LNWP FLDNFAL+SG  ++++
Sbjct: 4   MQREEKQLDSALEAIIMRVNDLKSAIAAMIFKLEHEYETLNWPNFLDNFALISGHLTSLS 63

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+L HDK P +RNLTVLPL L+PE++EELLRLTEGR+P F HDLVPDYLRTK EP  E K
Sbjct: 64  KILGHDKAPNLRNLTVLPLRLSPEKDEELLRLTEGRIPTFAHDLVPDYLRTKVEPQAEQK 123

Query: 121 LIQLEHKAASLSYDAAQ---KQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSL 177
           ++QLE KAA+L+Y+ +    KQ A + KVI HV DI +KAREEWESEAG+R    QTSS 
Sbjct: 124 MMQLEAKAANLNYETSHDCNKQVAQYTKVINHVWDIANKAREEWESEAGSRATQAQTSST 183

Query: 178 TDTHSLVAAVGMGRGLK-----MIMPGPGAPVGPGMMVAPGGPG-RPVGPGPGMPMGPGG 231
            DTH+LVAAVGMG+GLK     M+  G  + V  GM+V  G PG +   PG  +    G 
Sbjct: 184 ADTHALVAAVGMGKGLKSDSVQMVQSGVNS-VPSGMIV--GRPGNQQQTPGQSL----GN 236

Query: 232 QPMGMMGKNPSGIKTNIKAAAAIHPY 257
            PMG M K PS IKTNIKAA  IHPY
Sbjct: 237 PPMGQMTKAPSTIKTNIKAAPQIHPY 262

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720811|ref|XP_003398823.1| PREDICTED: mediator of RNA polymerase II transcription subunit 8-like [Bombus terrestris]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/267 (56%), Positives = 196/267 (73%), Gaps = 17/267 (6%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQL+S+LE+++M++N++K+ +  M+FK++H+ ++LNWP FLDNFAL+SG  ++++
Sbjct: 1   MQREEKQLDSALEAIIMRVNDLKTAIAAMIFKLEHEYETLNWPNFLDNFALISGHLTSLS 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           K+  HDK P +RNLTVLPL L+PE++EELLRLTEGR+P F HDLVPDYLRTK EP  E K
Sbjct: 61  KIFGHDKAPNLRNLTVLPLRLSPEKDEELLRLTEGRIPTFAHDLVPDYLRTKVEPQAEQK 120

Query: 121 LIQLEHKAAS----LSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSS 176
           ++QLE KAA+    +S+D   KQ + + KVI +V DI +KAREEWESEAG+R    QTSS
Sbjct: 121 MMQLETKAANTSTEMSHD-CNKQMSQYTKVINNVWDIANKAREEWESEAGSRATQAQTSS 179

Query: 177 LTDTHSLVAAVGMGRGLK-----MIMPGPGAPVGPGMMVAPGGPG-RPVGPGPGMPMGPG 230
             DTH+LVAAVGMG+GLK     M+  G  + V  GMMV  G PG +   PG G     G
Sbjct: 180 TADTHALVAAVGMGKGLKSDSVQMVQSGVNS-VPSGMMV--GRPGNQQQAPGQG---SLG 233

Query: 231 GQPMGMMGKNPSGIKTNIKAAAAIHPY 257
              MG M K PS IKTNIKAA+ IHPY
Sbjct: 234 NPSMGQMSKAPSAIKTNIKAASQIHPY 260

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017622|gb|EGI58319.1| Mediator of RNA polymerase II transcription subunit 8 [Acromyrmex echinatior]

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 146/263 (55%), Positives = 189/263 (71%), Gaps = 12/263 (4%)

Query: 1   MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
           MQREEKQ +S+LE+++M++N++K+ +  M+FK++H+ ++LNWP FLDNFAL+SG  ++++
Sbjct: 1   MQREEKQQDSALEAIIMRVNDLKNAISAMIFKVEHEYETLNWPNFLDNFALISGHLTSLS 60

Query: 61  KVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHK 120
           KVL HDK   +R LTVLPL L+PE++EELLRLTE R+P F HDLVPDYLRTK EP  E K
Sbjct: 61  KVLGHDKALNLRGLTVLPLRLSPEKDEELLRLTENRIPTFAHDLVPDYLRTKLEPQAEQK 120

Query: 121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
           ++QLE KAA+++ D + KQ A + KVI+HV DI +KARE+WE E   R    QTSS  DT
Sbjct: 121 MMQLEAKAANVNIDTSHKQLAQYTKVISHVWDIANKAREDWEGEVSTRATQAQTSSAADT 180

Query: 181 HSLVAAVGMGRGLK-----MIMPGPGAPVGPGMMVA-PGGPGRPVGPGPGMPMGPGGQPM 234
           H+L+AAVGMG+GLK     M+  G   PV   MMV  PG   +  G GP      G  PM
Sbjct: 181 HALLAAVGMGKGLKSDSIQMVQSGVN-PVTNNMMVGRPGNQQQTTGQGP-----LGNPPM 234

Query: 235 GMMGKNPSGIKTNIKAAAAIHPY 257
           G M K PS IKTNIKAA+ IHPY
Sbjct: 235 GQMNKAPSAIKTNIKAASQIHPY 257

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
FB|FBgn0034503	252	MED8 "Mediator complex subunit	0.752	0.773	0.492	6.1e-56
UNIPROTKB|F1NG55	266	MED8 "Uncharacterized protein"	0.729	0.710	0.445	1.1e-44
UNIPROTKB|F1MMX8	269	MED8 "Uncharacterized protein"	0.737	0.710	0.440	1.1e-44
UNIPROTKB|F1S313	288	MED8 "Uncharacterized protein"	0.737	0.663	0.440	1.4e-44
MGI|MGI:1915269	268	Med8 "mediator of RNA polymera	0.737	0.712	0.440	2.3e-44
UNIPROTKB|Q96G25	268	MED8 "Mediator of RNA polymera	0.737	0.712	0.440	5.9e-44
RGD|1305552	234	Med8 "mediator complex subunit	0.737	0.816	0.406	9.4e-40
ZFIN|ZDB-GENE-040426-2091	267	med8 "mediator complex subunit	0.741	0.719	0.390	1.2e-39
UNIPROTKB|F1P8G9	234	MED8 "Uncharacterized protein"	0.428	0.474	0.423	4.1e-28
WB|WBGene00007013	297	mdt-8 [Caenorhabditis elegans	0.725	0.632	0.208	6.3e-08

FB|FBgn0034503 MED8 "Mediator complex subunit 8" [Drosophila melanogaster (taxid:7227)]

 Score = 520 (188.1 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
 Identities = 96/195 (49%), Positives = 139/195 (71%)

Query:     1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
             MQR+EK  E +L++V+ +LN++K  ++ M+ K++ + +++NWPTFLDNFA++S   + + 
Sbjct:     1 MQRDEKLFELTLDTVLQRLNDLKLAVLSMIQKLELEYETINWPTFLDNFAIISSHLTGLT 60

Query:    61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
             K+L+ ++ PP+RN TV                  GRVP F+HD+VPDYLRT+ +P  E K
Sbjct:    61 KILAKEQCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVFSHDIVPDYLRTRPDPITEQK 120

Query:   121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
             ++Q E KAA+L+ DAA KQ   +NKV++HVLD+VSKAREEWE E+ +R G  QTSS+ DT
Sbjct:   121 MLQNEQKAANLTNDAAMKQVTQYNKVVSHVLDMVSKAREEWEIESSSRTGIQQTSSMADT 180

Query:   181 HSLVAAVGMGRGLKM 195
               LVAAVGMG+GLK+
Sbjct:   181 QLLVAAVGMGKGLKL 195

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IMP

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0016592 "mediator complex" evidence=IEA;IC;ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IC

UNIPROTKB|F1NG55 MED8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
 Identities = 85/191 (44%), Positives = 127/191 (66%)

Query:     3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKV 62
             REEKQLE +LE+++ ++ ++K+ LV  ++K++++ D L WP+ LD+FALLSGQ + + KV
Sbjct:     1 REEKQLELTLEALISQVADLKNSLVSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLNKV 60

Query:    63 LSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHKLI 122
             L H+KTP +RN  +                  GRVP F+H++VPD+LRTK +P+VE +  
Sbjct:    61 LKHEKTPLLRNQVIIPLVLSPDRDEEIMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEK 120

Query:   123 QLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTHS 182
             QL   AA +S D AQKQ  + NK+ +++L+ +SK  EE ESE+G      QT + TDT++
Sbjct:   121 QLITDAARISPDGAQKQIQSLNKMCSNLLEKISK--EERESESGGLRQNKQTFNPTDTNA 178

Query:   183 LVAAVGMGRGL 193
             LVAAV  G+GL
Sbjct:   179 LVAAVAFGKGL 189

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|F1MMX8 MED8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 413 (150.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
 Identities = 85/193 (44%), Positives = 127/193 (65%)

Query:     1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
             MQREEKQLE+SL++++ ++ ++K+ L   ++K++++ D L WP+ LD+FALLSGQ + + 
Sbjct:     1 MQREEKQLEASLDALLSQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 60

Query:    61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
             KVL H+KTP  RN  +                  GRVP F+H++VPD+LRTK +P+VE +
Sbjct:    61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120

Query:   121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
               QL   AA +  DAAQKQ  + NK+ +++L+ +SK  EE ESE+G      QT +  DT
Sbjct:   121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPADT 178

Query:   181 HSLVAAVGMGRGL 193
             ++LVAAV  G+GL
Sbjct:   179 NALVAAVAFGKGL 191

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|F1S313 MED8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 412 (150.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 85/193 (44%), Positives = 126/193 (65%)

Query:     1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
             MQREEKQLE+SL++++ ++ ++K+ L   ++K++++ D L WP+ LD+FALLSGQ + + 
Sbjct:     1 MQREEKQLEASLDALLSQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 60

Query:    61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
             KVL H+KTP  RN  +                  GRVP F+H++VPD+LRTK +P+VE +
Sbjct:    61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120

Query:   121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
               QL   AA +  DAAQKQ  + NK+ +++L+ +SK  EE ESE G      QT +  DT
Sbjct:   121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESEGGGLRPNKQTFNPADT 178

Query:   181 HSLVAAVGMGRGL 193
             ++LVAAV  G+GL
Sbjct:   179 NALVAAVAFGKGL 191

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

MGI|MGI:1915269 Med8 "mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 410 (149.4 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 85/193 (44%), Positives = 127/193 (65%)

Query:     1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
             MQREEKQLE+SL++++ ++ ++K+ L   ++K++++ D L WP+ LD+FALLSGQ + + 
Sbjct:     1 MQREEKQLEASLDALLNQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 60

Query:    61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
             KVL H+KTP  RN  +                  GRVP F+H++VPD+LRTK +P+VE +
Sbjct:    61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120

Query:   121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
               QL   AA +  DAAQKQ  + NK+ +++L+ +SK  EE ESE+G      QT +  DT
Sbjct:   121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPGDT 178

Query:   181 HSLVAAVGMGRGL 193
             ++LVAAV  G+GL
Sbjct:   179 NALVAAVAFGKGL 191

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=ISA;IDA

UNIPROTKB|Q96G25 MED8 "Mediator of RNA polymerase II transcription subunit 8" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 85/193 (44%), Positives = 126/193 (65%)

Query:     1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
             MQREEKQLE+SL++++ ++ ++K+ L   + K++++   L WP+ LD+FALLSGQ + + 
Sbjct:     1 MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN 60

Query:    61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHK 120
             KVL H+KTP  RN  +                  GRVP F+H++VPD+LRTK +P+VE +
Sbjct:    61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120

Query:   121 LIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDT 180
               QL   AA +  DAAQKQ  + NK+ +++L+ +SK  EE ESE+G      QT + TDT
Sbjct:   121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGGLRPNKQTFNPTDT 178

Query:   181 HSLVAAVGMGRGL 193
             ++LVAAV  G+GL
Sbjct:   179 NALVAAVAFGKGL 191

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

RGD|1305552 Med8 "mediator complex subunit 8" [Rattus norvegicus (taxid:10116)]

 Score = 366 (133.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 85/209 (40%), Positives = 127/209 (60%)

Query:     1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSL----------------NWPT 44
             MQREEKQLE+SL++++ ++ ++K+ L   ++K++++ D L                N P+
Sbjct:     1 MQREEKQLEASLDALLNQVADLKNSLGSFIYKLENEYDRLTCRKISCFYCSQSRANNGPS 60

Query:    45 FLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDL 104
              LD+FALLSGQ + + KVL H+KTP  RN  +                  GRVP F+H++
Sbjct:    61 VLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEV 120

Query:   105 VPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESE 164
             VPD+LRTK +P+VE +  QL   AA +  DAAQKQ  + NK+ +++L+ +SK  EE ESE
Sbjct:   121 VPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESE 178

Query:   165 AGARGGTGQTSSLTDTHSLVAAVGMGRGL 193
             +G      QT +  DT++LVAAV  G+GL
Sbjct:   179 SGGLRPNKQTFNPADTNALVAAVAFGKGL 207

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

ZFIN|ZDB-GENE-040426-2091 med8 "mediator complex subunit 8" [Danio rerio (taxid:7955)]

 Score = 371 (135.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 75/192 (39%), Positives = 119/192 (61%)

Query:     2 QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
             QREEKQLE+ LES+V ++  +K  L   ++K++++ D L WP+ LDNFAL+SGQ + I K
Sbjct:     3 QREEKQLEAFLESLVARVAHLKGSLQSFIYKLENEYDRLTWPSVLDNFALISGQLNTINK 62

Query:    62 VLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQEPDVEHKL 121
             +L ++KTP  ++  +                   RVP F+H++VPD+LRTK +P+VE + 
Sbjct:    63 LLRNEKTPSYKSQVIIPLLLSPDRDEELAKLTEHRVPVFSHEIVPDHLRTKPDPEVEEQE 122

Query:   122 IQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTH 181
               L  +AA +  + AQKQ    NK+ +++L+ ++  RE+ +SE  A      + +  DT+
Sbjct:   123 KHLSAEAARIGPEVAQKQIQALNKLCSNLLEKLNNPREDRDSETSALRQNKPSFNPADTN 182

Query:   182 SLVAAVGMGRGL 193
             +LVAAVG G+GL
Sbjct:   183 ALVAAVGFGKGL 194

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P8G9 MED8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 255 (94.8 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 47/111 (42%), Positives = 74/111 (66%)

Query:     1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIA 60
             +QREEKQLE+SL++++ ++ ++K+ L   ++K++++ D L WP+ LD+FALLSGQ + + 
Sbjct:    73 VQREEKQLEASLDALLSQVADLKNSLGSFIYKLENEYDRLTWPSVLDSFALLSGQLNTLN 132

Query:    61 KVLSHDKTPPIRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRT 111
             KVL H+KTP  RN  +                  GRVP F+H++VPD+LRT
Sbjct:   133 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRT 183

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

WB|WBGene00007013 mdt-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 138 (53.6 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 42/201 (20%), Positives = 93/201 (46%)

Query:     2 QREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAK 61
             Q E +++  + + ++ ++ + K  +  +L  +D  ++   WP  L+ F+ L+   S++  
Sbjct:    15 QGEPEKIAQATDMMIKRVTDAKKIIEELLQMLDL-QEKCPWPLMLEKFSTLASFMSSLQS 73

Query:    62 VLSHDKTPP--------IRNLTVXXXXXXXXXXXXXXXXXXGRVPAFTHDLVPDYLRTKQ 113
              +     P         +R+  +                  GRV ++ H LVP+YLRTK 
Sbjct:    74 SVRKSGMPHGHEDYGQFLRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALVPEYLRTKP 133

Query:   114 EPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREEWESEAGARGGTGQ 173
              P++E++   L+ + ++ S D   +Q A +NK I  +++ ++   +   +EA        
Sbjct:   134 NPEMENEEGMLDGERSAKSADLVVRQIAAYNKNIEGLINHLNSV-DRMHTEAAIEK---P 189

Query:   174 TSSLTDTHSLVAAVGMGRGLK 194
             T +  +T  +V ++  G G++
Sbjct:   190 TYNRDETAKIVKSILTGEGIR 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       199   0.00085  111 3  11 23  0.37    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.93u 0.11s 16.04t   Elapsed:  00:00:02
  Total cpu time:  15.93u 0.11s 16.04t   Elapsed:  00:00:02
  Start:  Thu Aug 15 14:46:15 2013   End:  Thu Aug 15 14:46:17 2013

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A1ZBT5	MED8_DROME	No assigned EC number	0.5096	0.9729	1.0	yes	N/A
Q08BU1	MED8_XENTR	No assigned EC number	0.4708	0.9729	0.9438	yes	N/A
Q9D7W5	MED8_MOUSE	No assigned EC number	0.4654	0.9729	0.9402	yes	N/A
Q16RR7	MED8_AEDAE	No assigned EC number	0.5325	0.9459	0.98	N/A	N/A
Q6NYT1	MED8_DANRE	No assigned EC number	0.4464	0.9729	0.9438	yes	N/A
Q96G25	MED8_HUMAN	No assigned EC number	0.4581	0.9729	0.9402	yes	N/A
Q7Q6D6	MED8_ANOGA	No assigned EC number	0.5095	0.9420	0.9799	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	259
pfam10232	226	pfam10232, Med8, Mediator of RNA polymerase II tra	3e-55

>gnl|CDD|150843 pfam10232, Med8, Mediator of RNA polymerase II transcription complex subunit 8

 Score =  177 bits (449), Expect = 3e-55
 Identities = 99/265 (37%), Positives = 134/265 (50%), Gaps = 45/265 (16%)

Query: 1   MQR-EEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAI 59
           MQR  EKQL  SLE+V  +L ++K  L  ++ K++ + +  +WPTF D FA+LS Q  ++
Sbjct: 1   MQRTSEKQLVDSLEAVRNRLAQLKQSLTSLIDKLEQEYELPSWPTFQDQFAILSSQLVSL 60

Query: 60  AKVLSHDKTPPIRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEH 119
            K+L+H+K   +RN  V PL L P R++E               LV   LRTK +P+VE 
Sbjct: 61  TKILAHEK-DLLRNTVVYPLPLFPTRDQE--------------PLVTTLLRTKPDPEVEE 105

Query: 120 KLIQLEHKAASLSYDAAQKQA-----ATFNKVITHVLDIVSKAREEWESEAGARGGTGQT 174
            + Q   KA + + D A KQ         NK +++ LD V+K REEWE E+  R    QT
Sbjct: 106 WMKQARQKAENSTKDTAAKQEVEIDILQQNKEVSNWLDKVTKLREEWEFESSHRVEIEQT 165

Query: 175 SSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPM 234
           S   DT+ LVAAV  G+GL                       R   P  G  M   GQP 
Sbjct: 166 SEEEDTNQLVAAVKDGKGL-------------------RPAIRQASPMGGKQMSQAGQP- 205

Query: 235 GMMGKNPSGIKTNIKAAAAIHPYSR 259
              GK PS I T IK + ++HPY R
Sbjct: 206 ---GKMPSDILTFIK-SGSVHPYQR 226

Arc32, or Med8, is one of the subunits of the Mediator complex of RNA polymerase II. The region conserved contains two alpha helices putatively necessary for binding to other subunits within the core of the Mediator complex. The N-terminus of Med8 binds to the essential core Head part of Mediator and the C-terminus hinges to Med18 on the non-essential part of the Head that also includes Med20. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG3583|consensus	279		100.0
PF10232	226	Med8: Mediator of RNA polymerase II transcription	100.0
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.19
KOG1924|consensus	1102		83.96

>KOG3583|consensus

Probab=100.00  E-value=9.1e-84  Score=575.84  Aligned_cols=254  Identities=35%  Similarity=0.504  Sum_probs=230.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccc
Q psy18165          1 MQREEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLI   80 (259)
Q Consensus         1 mqrEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~   80 (259)
                      ||+|+|.++.++|.+|.||+|+|..|++||+|||.| +.|.||.|||||+.|+++|++|+++|+++.+|.|||+||||++
T Consensus         1 ~q~e~~~~~~~~d~~ikr~~d~k~~i~~llq~ldlq-~~~~wp~~le~fs~las~ms~l~~~~~k~~~p~lr~~~~~~~~   79 (279)
T KOG3583|consen    1 YQGEPEKIAQATDMMIKRVTDAKKIIEELLQMLDLQ-EKCPWPLMLEKFSTLASFMSSLQSSVRKSGMPHLRSHVLVTQR   79 (279)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCccHHHHHHHHHHHHHHHHHHHHHHHccCCccccchhhhhh
Confidence            799999999999999999999999999999999999 6677999999999999999999999999999999999999999


Q ss_pred             cCCCchHHHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18165         81 LNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQAATFNKVITHVLDIVSKAREE  160 (259)
Q Consensus        81 LsperDe~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e~aqKQI~~~Nk~v~~ll~~l~~~re~  160 (259)
                      |++|+||.|+++|||||++|||++||||||||||||||++|.+|+.+|++++.|+|+|||++|||+|++||++|++.+++
T Consensus        80 ~~~e~detl~r~TeGRVpvfsH~lVPdyLRTkPdPe~E~~e~ql~~~aa~~saDaa~kQI~~yNK~is~ll~~lsk~~re  159 (279)
T KOG3583|consen   80 LQYEPDETLQRATEGRVPVFSHALVPDYLRTKPDPEMENEEGQLDGEAAAKSADAAVKQIAAYNKNISGLLNHLSKVDRE  159 (279)
T ss_pred             hhcCchHHHHHHhcCcccccccccchHhhccCCChhhHHHHhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCChHHHHHHHHHHHhCCCCCCC----CCCCCCCCCCCcccC--CC-CCCCCCCCCCCCCCCCCCCC
Q psy18165        161 WESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMI----MPGPGAPVGPGMMVA--PG-GPGRPVGPGPGMPMGPGGQP  233 (259)
Q Consensus       161 we~e~~~~~~~~~T~s~~DT~~LVaAV~~GkGL~~~----~~~~~~~~~~~~m~~--~~-~~~~~~~~~~~~~~~~~~~~  233 (259)
                      | +|++.++.+++|||++||++|||||+|||||+.+    .+||++.|-+|++++  |. .|+.+|+ +| +.+|.++.|
T Consensus       160 ~-tEs~~~~piqQT~n~~dT~~lVaaV~~GkGl~~~r~~~~~gPg~a~~pga~s~~gpS~~qpi~m~-qP-~~sg~q~~Q  236 (279)
T KOG3583|consen  160 H-TESAIEKPIQQTYNRDDTAKLVAAVLTGKGLRSQRTMAPAGPGSAPMPGAPSSTGPSSSQPISMN-QP-EYSGSQLRQ  236 (279)
T ss_pred             H-HHhhhcCccccccChhHHHHHHHHHHhccccccccccCCCCCCCCCCCCCCCCCCCcccCCCCCC-CC-ccChHHHHH
Confidence            9 9999999999999999999999999999999955    666665555665565  22 7777772 22 334445555


Q ss_pred             CCCCCCCCCchhhhhhhcccc-CC-CCC
Q psy18165        234 MGMMGKNPSGIKTNIKAAAAI-HP-YSR  259 (259)
Q Consensus       234 ~~~~gk~ps~iktniksa~~~-hp-y~r  259 (259)
                      ..++| +||+||||||+|+.. || |.+
T Consensus       237 ql~~g-~Ps~~ktniksas~hq~P~~s~  263 (279)
T KOG3583|consen  237 QLSGG-QPSTSKTNIKSASHHQQPQYSH  263 (279)
T ss_pred             hccCC-CCchhhhcccchhhccCccccc
Confidence            55566 999999999999766 78 754

>PF10232 Med8: Mediator of RNA polymerase II transcription complex subunit 8; InterPro: IPR019364 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=1.6e-62  Score=437.30  Aligned_cols=220  Identities=47%  Similarity=0.687  Sum_probs=121.9

Q ss_pred             Chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeecc
Q psy18165          1 MQR-EEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPL   79 (259)
Q Consensus         1 mqr-EeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl   79 (259)
                      ||+ |+|||+.+||+|++|+++||+||++|+++|+++++.++||+|||+|++|++||++|+++|++++ |.||++||+|+
T Consensus         1 m~~~e~~ql~~aLe~ir~Rl~qL~~SL~~l~~~L~~~~~lp~W~slq~qf~il~~qL~sL~~~L~~~~-~~L~~~vv~P~   79 (226)
T PF10232_consen    1 MQRIEEKQLEKALEAIRQRLAQLKHSLQSLIDKLEQSQPLPPWPSLQDQFAILSSQLSSLSKTLQHNK-PLLRNTVVYPL   79 (226)
T ss_dssp             ----------TTTSTTTHHHHHHHHHHHHHHHHHT-T-SS---HHHHHHHHHHHHHHHHHHHHTTTSS-TTTTTS--TTS
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcc-ccccceeeecC
Confidence            885 9999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             ccCCCchHHHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHHHHHHHHHHH
Q psy18165         80 ILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAASLSYDAAQKQ-----AATFNKVITHVLDIV  154 (259)
Q Consensus        80 ~LsperDe~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~aa~~~~e~aqKQ-----I~~~Nk~v~~ll~~l  154 (259)
                      .++|++|++              ++||||||||||||||+.++++..++++++.+.++||     |+++|+.|++++++|
T Consensus        80 ~~fP~~~~e--------------~ll~~lLRtKl~PeVE~~~~~~~~~~~~~~~~~~~~q~~~~~i~~~~k~~~~~~~~~  145 (226)
T PF10232_consen   80 PLFPGRDEE--------------DLLPDLLRTKLDPEVEEWEAQLREEAANATPDAAQKQQAELAIAQYNKRISNWLDVV  145 (226)
T ss_dssp             ---S--TTG--------------GGTTHHHHH----GGGTTTSTTT---TTS-S--SSS-SSTTTHHHHHHHHHHH--TT
T ss_pred             CCCCCcChH--------------HHHHHHHhCCCCChHHHHHHHHHHHHHhcCcCHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999997              9999999999999999999999999999999999999     999999999999999


Q ss_pred             HHHHHhHHHhhccCCCCCCCCChHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy18165        155 SKAREEWESEAGARGGTGQTSSLTDTHSLVAAVGMGRGLKMIMPGPGAPVGPGMMVAPGGPGRPVGPGPGMPMGPGGQPM  234 (259)
Q Consensus       155 ~~~re~we~e~~~~~~~~~T~s~~DT~~LVaAV~~GkGL~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  234 (259)
                      +.+|++||.+......+++|++.+||++||++|++|+||+...                .++.|+       ++++++++
T Consensus       146 t~lree~e~~~~~~~~~~~~~~~~dt~~lv~~~~~g~gl~~~~----------------~~~~~~-------g~~~~~~~  202 (226)
T PF10232_consen  146 TGLREEWEFEDFSDREEEQTSEEEDTEALVAAVGFGKGLKPQF----------------EQQIPM-------GGGQQSQA  202 (226)
T ss_dssp             TTTHHH---HTTT------------HHHHHH------SS-HH--------------------------------------
T ss_pred             HHHHHHHhhhhccccccccccChhHHHHHHHHhhcchhccccc----------------chhhhh-------hhhhhhhh
Confidence            9999999999999999999999999999999999999999110                111122       12223345


Q ss_pred             CCCCCCCCchhhhhhhccccCCCCC
Q psy18165        235 GMMGKNPSGIKTNIKAAAAIHPYSR  259 (259)
Q Consensus       235 ~~~gk~ps~iktniksa~~~hpy~r  259 (259)
                      ++|||+||+||||||+|+ ||||+|
T Consensus       203 ~~~~~~p~~i~~~m~~g~-~~p~~r  226 (226)
T PF10232_consen  203 GQPGKPPSDIKTFMKTGS-MHPYQR  226 (226)
T ss_dssp             -------------------------
T ss_pred             hhhhhhhhhhhhhccccc-ccccCC
Confidence            679999999999999998 999998

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Arc32, or Med8, is one of the subunits of the Mediator complex of RNA polymerase II. The region conserved contains two alpha helices putatively necessary for binding to other subunits within the core of the Mediator complex. The N terminus of Med8 binds to the essential core Head part of Mediator and the C terminus hinges to Med18 on the non-essential part of the Head that also includes Med20 []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3C0T_B 3RJ1_J 2HZS_I.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.19  E-value=3.3  Score=45.49  Aligned_cols=137  Identities=22%  Similarity=0.342  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccC
Q psy18165          3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILN   82 (259)
Q Consensus         3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~Ls   82 (259)
                      ++.++.+..|..+..++.+++..+..+-..|+..  .-+|=.||.+=  ..|+-++|=|++..|   .|...-+-|.+..
T Consensus       504 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~--~gSL~~fL~~~--~p~We~tIGKVid~e---LL~r~dL~P~l~~  576 (1201)
T PF12128_consen  504 KERDQAEEELRQARRELEELRAQIAELQRQLDPQ--KGSLLEFLRKN--KPGWEQTIGKVIDEE---LLYRTDLEPQLVE  576 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHHHHhC--CCcHHHHhHhhCCHH---HhcCCCCCCeecC
Confidence            3445667778888899999999999999999755  77888899776  789999999988765   4666666676665


Q ss_pred             CC-chH------HHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHH
Q psy18165         83 PE-REE------ELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHK--AASLSYDAAQKQAATFNKVITHVLDI  153 (259)
Q Consensus        83 pe-rDe------~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~~~--aa~~~~e~aqKQI~~~Nk~v~~ll~~  153 (259)
                      .. .|-      +|..+           -+|||.+++.  +++++..+++..  .+..-.+.+.|++.++|+.++.+-..
T Consensus       577 ~~~~dslyGl~LdL~~I-----------~~pd~~~~ee--~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~  643 (1201)
T PF12128_consen  577 DSGSDSLYGLSLDLSAI-----------DVPDYAASEE--ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKRE  643 (1201)
T ss_pred             CCcccccceeEeehhhc-----------CCchhhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54 220      12222           2799999887  777766666433  11223567888888889888888777


Q ss_pred             HHHHHH
Q psy18165        154 VSKARE  159 (259)
Q Consensus       154 l~~~re  159 (259)
                      +..++-
T Consensus       644 ~~~~~~  649 (1201)
T PF12128_consen  644 ITQAEQ  649 (1201)
T ss_pred             HHHHHH
Confidence            665543

>KOG1924|consensus

Probab=83.96  E-value=2.2  Score=45.96  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=18.2

Q ss_pred             HHHH-HHHHHHHHhhhccCCCCCchHHHHHHHHhh
Q psy18165         20 NEIK-SQLVGMLFKIDHDRDSLNWPTFLDNFALLS   53 (259)
Q Consensus        20 ~dlK-~sI~~li~kLE~e~e~l~WPsvLD~FAlLS   53 (259)
                      ++.| ..+++|.++||+=  +...-++-|=|-+|.
T Consensus       360 dE~~e~Dl~el~~rledi--r~emDd~~~~f~lL~  392 (1102)
T KOG1924|consen  360 DEHKEDDLEELSGRLEDI--RAEMDDANEVFELLA  392 (1102)
T ss_pred             hhhhhhhHHHHHhHHHhh--hhhhccHHHHHHHHH
Confidence            3444 5666677777643  555555555565554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
3rj1_C	223	Mediator of RNA polymerase II transcription subun;	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3rj1_C Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae} Length = 223

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 11  SLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPP 70
           +L++V M+L ++   L  +  ++    +   W T      +   Q  ++   L H +   
Sbjct: 32  ALDAVRMRLAQLTHSLRRIRDEMSKA-ELPQWYTLQSQLNVTLSQLVSVTSTLQHFQET- 89

Query: 71  IRNLTVLPLILNPEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLEHKAAS 130
           + +  V PL   P    E L  T               LR K  P+V+  +  +   +  
Sbjct: 90  LDSTVVYPLPKFPTTSHESLVTT--------------LLRKKNIPEVDEWMKYVRETSGV 135

Query: 131 LSYDAAQKQAATFNKVITHVLD-IVSKAREEWE 162
            +     ++     +    + +   +  R E+ 
Sbjct: 136 TTALLKDEEIEKLLQQDREITNWARTTFRNEYG 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 49/171 (28%)

Query: 4   EEKQLESSLESVV-MKLNEIKSQ----------LVGMLFKIDHDR-DSLNWP-------- 43
              +++S L   +  +  ++  +          ++    +      D  NW         
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLT 356

Query: 44  ----TFLDNF--ALLSGQFSAIAKVLSHD-KTPPIRNLTVLPLI-LNPEREE------EL 89
               + L+    A     F  ++ V       P I    +L LI  +  + +      +L
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTI----LLSLIWFDVIKSDVMVVVNKL 411

Query: 90  LR--LTEGRVPAFT---HDLVPDYLRTKQEPDVE-HKLIQLEHKAASLSYD 134
            +  L E +    T     +  + L+ K E +   H+ I ++H     ++D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLE-LKVKLENEYALHRSI-VDHYNIPKTFD 460

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
4h63_H	200	Mediator of RNA polymerase II transcription subun;	99.9
4gwp_C	407	Mediator of RNA polymerase II transcription subun;	99.48

>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}

Probab=99.90  E-value=7.7e-25  Score=191.96  Aligned_cols=173  Identities=21%  Similarity=0.280  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccC
Q psy18165          3 REEKQLESSLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILN   82 (259)
Q Consensus         3 rEeKqLe~aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~Ls   82 (259)
                      ..+++++ +||+|+.|+++|++||..|+++|+++++..+||++|++|++|++||++|++.|. +..|.||++||+|+.+.
T Consensus         5 ~~~~~~~-~LEs~R~Rl~qL~~Sl~~l~~~l~~~~~lp~W~sll~q~~vl~~qL~sl~~~L~-~~~~~l~~~~v~P~~~~   82 (200)
T 4h63_H            5 STEKTVE-SLEAIRHRIAQIVQSLTHFLAILHQSESLSPWPTIHKNFNILLSQIHSLSNNLA-AHSHTLQTTSIYPSLEF   82 (200)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHTEEEEECTTS
T ss_pred             cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcceeccCCCC
Confidence            4567788 599999999999999999999999999999999999999999999999999995 67899999999999999


Q ss_pred             CCchHHHHhhhcCCcccCCCCcccccccCCCCchHHHHHHHHH-HHHhcC---------------CHHHHHHHHHHHHHH
Q psy18165         83 PEREEELLRLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQLE-HKAASL---------------SYDAAQKQAATFNKV  146 (259)
Q Consensus        83 perDe~L~~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L~-~~aa~~---------------~~e~aqKQI~~~Nk~  146 (259)
                      |++|++              .+++.+||||++||||.-...-. +.+..+               .......++......
T Consensus        83 P~~~~e--------------~~L~~LLR~K~~PeVe~wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  148 (200)
T 4h63_H           83 PVKEQE--------------PLLTTLLRTKALPEVEEWEANTLQEYEASISSQPKKKEANDAYQKDQLWDQARIIFMEER  148 (200)
T ss_dssp             CTTTCH--------------HHHHHHTCCCCCHHHHHHHHHHHHHHHHHC--------CTTHHHHHHHHHHHHHHHHHHG
T ss_pred             CCcchh--------------hHHHHHhcCCCCchHHHHHHHHHHhcccccccccchhhHHHHHhhHHHHHHHHHHHHHHH
Confidence            999876              45667999999999999876653 211111               122345566666666


Q ss_pred             HHHHHHHHHHHHHhHHHhhccCCCCCCCCChHHHH------HHHHHHHhCC
Q psy18165        147 ITHVLDIVSKAREEWESEAGARGGTGQTSSLTDTH------SLVAAVGMGR  191 (259)
Q Consensus       147 v~~ll~~l~~~re~we~e~~~~~~~~~T~s~~DT~------~LVaAV~~Gk  191 (259)
                      .++-|..+-..+|+|+.+..+......+.+.+++.      .+....+.|+
T Consensus       149 ~~~~w~g~~t~eE~~~g~~~~~~~~~~~~~~e~~~~~~~~~~vl~f~~~G~  199 (200)
T 4h63_H          149 ENYSWFDFVTRRQESEGEFVSQRQLEIDRATEEQNANQMLTDILSFMKSGK  199 (200)
T ss_dssp             GGSCCC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HhhhhccchhHHHhhcCccccchhhhhhccccccCCCCCHHHHHHHHhcCC
Confidence            66777667777889998887776666666666653      4556666654

>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A

Probab=99.48  E-value=3.7e-14  Score=134.50  Aligned_cols=98  Identities=21%  Similarity=0.345  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHHhhHHHHHHHHHhccCCCCCCcceeeeccccCCCchHHHH
Q psy18165         11 SLESVVMKLNEIKSQLVGMLFKIDHDRDSLNWPTFLDNFALLSGQFSAIAKVLSHDKTPPIRNLTVLPLILNPEREEELL   90 (259)
Q Consensus        11 aL~ai~~Rv~dlK~sI~~li~kLE~e~e~l~WPsvLD~FAlLSgql~~L~k~L~~ek~P~Lrn~vvlPl~LsperDe~L~   90 (259)
                      +||+|+.|+.+|++||..|+..|.. ++-.+||+++++|++|++||.+|.+.|. +..+.|+++||+|+...|.++.+- 
T Consensus        32 aLEslR~RL~QLt~SL~sL~~~L~~-spLP~W~SLqsQfnILlsQL~SLs~~L~-~n~~lL~~~vVyP~p~FP~rtqE~-  108 (407)
T 4gwp_C           32 ALDAVRMRLAQLTHSLRRIRDEMSK-AELPQWYTLQSQLNVTLSQLVSVTSTLQ-HFQETLDSTVVYPLPKFPTTSHES-  108 (407)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHHH-HHTHHHHHHHCCCCCCCGGGTTTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHHHHHHHHHH-hcchHhhhceeccCCCCCCcchhh-
Confidence            6999999999999999999999975 4999999999999999999999999994 567899999999999999997643 


Q ss_pred             hhhcCCcccCCCCcccccccCCCCchHHHHHHHH
Q psy18165         91 RLTEGRVPAFTHDLVPDYLRTKQEPDVEHKLIQL  124 (259)
Q Consensus        91 ~~TEgRV~~f~HdvVPDyLRTKpdPevE~~e~~L  124 (259)
                                   ++.-+||||++||||+-...-
T Consensus       109 -------------LLttLLRKKl~PEVEeWi~~g  129 (407)
T 4gwp_C          109 -------------LVTTLLRKKNIPEVDEWMKYV  129 (407)
T ss_dssp             -------------THHHHHTCCCCCTTHHHHHHH
T ss_pred             -------------HHHHHhccCCCchHHHHHHHH
Confidence                         455599999999999877654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00