Diaphorina citri psyllid: psy18204

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----

MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDGGKESRSKQPISPSAEEVWKIKEAISKASSLEEIERLNKLLQSGQIPGREDAENH

cccccHHHHHHHHHccccccccEEEcccccccHHcccccccccccEEEcccccccccccccccccccccccccccccccccHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHccccccHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHccccccccHHHcHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccEEEEEEEECccccccccccccccccccEEEEEEEEECccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc

MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFD**********ISPSAEEVWKIKEAISKASSLEEIERLNKLLQS************

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Probable U2 small nuclear ribonucleoprotein A'	This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.	confident	Q9V4Q8
Probable U2 small nuclear ribonucleoprotein A'	This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.	confident	Q9BLB6
U2 small nuclear ribonucleoprotein A'	This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.	confident	P09661

Prediction of Gene Ontology Terms

GO Term	Description	Confidence Level	Parent GO Terms
GO:0071011 [CC]	precatalytic spliceosome	probable	GO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0071013 [CC]	catalytic step 2 spliceosome	probable	GO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0005686 [CC]	U2 snRNP	probable	GO:0005575, GO:0032991, GO:0043231, GO:0030532, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0030620 [MF]	U2 snRNA binding	probable	GO:0097159, GO:0017069, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0005829 [CC]	cytosol	probable	GO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0005783 [CC]	endoplasmic reticulum	probable	GO:0005737, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0000398 [BP]	mRNA splicing, via spliceosome	probable	GO:0090304, GO:0034641, GO:0006807, GO:1901360, GO:0006139, GO:0044260, GO:0071704, GO:0010467, GO:0008380, GO:0044238, GO:0009987, GO:0006725, GO:0000375, GO:0000377, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0016071, GO:0044237, GO:0043170, GO:0006396, GO:0006397
GO:0005730 [CC]	nucleolus	probable	GO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0009507 [CC]	chloroplast	probable	GO:0005737, GO:0009536, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0015030 [CC]	Cajal body	probable	GO:0044446, GO:0016604, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422

Prediction of Enzyme Commission Number

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3VQ2, chain A
Confidence level:very confident
Coverage over the Query: 18-177
View the alignment between query and template
View the model in PyMOL

Template: 3OJA, chain A
Confidence level:very confident
Coverage over the Query: 13-190
View the alignment between query and template
View the model in PyMOL

Template: 1IUQ, chain A
Confidence level:probable
Coverage over the Query: 172-275
View the alignment between query and template
View the model in PyMOL