Psyllid ID: psy18204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
Protein Sequence
MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDGGKESRSKQPISPSAEEVWKIKEAISKASSLEEIERLNKLLQSGQIPGREDAENH
Secondary Structure (PSIPRED)
cccccHHHHHHHHHccccccccEEEccccccHHHHccccccccccEEEcccccccccccccccccccccccccccccccccHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHccccccHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHccccccccHHHcHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccEEEEEEEEEccccccccccccccccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHccEEEcccccEEEEcccccccccccHHHHcccccEEEcccccccEEccccccccccEEEcccccccEEcccHHHHcccccEEEccccccccHHHHHHHHHcccccEEEccccHHHHcccHHHHHHHHcccccEEccEEccHHHHHHHHcccEEEEEccccccccEEEEEEccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHEEEHccHHHcHHHHHHHHHHHccccccccccccHHHHHHHHccccHHccccccccccccccccEEEEHHHccccccEEEEEEEEccccccccHHHHHccccccEEEEEEEEEcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MVKLTADLIVQCMQytnpvkdreldlrgykipvienmgatldqfdtidfsnndirkidgfpllkrlsclffnnnRIVRIAENLQenlpnletliltgnniqelgdldplstlpklktlcllhnpvinrphyrlyvafklpqvklldfSKVKLKALMNVMFGTEiilsgdsidagDQALFIMNHRTrldwnflwgcmfhasrpsaHRLKMVLkspirhapgpgwvMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKaktfvpgaalqdlsniptgnqlnaVYDITVGylgtipqsemdavhgkfpsqahfhikkystdslpvsdtDAMKAWLNQIWAEKEAHLNRfydkgyfdggkesrskqpispsaEEVWKIKEAISKASSLEEIERLNKLLQsgqipgredaenh
Flexible Loop (DISEMBL)
MVKLTADLIVQCMqytnpvkdreldLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKaktfvpgaalqdlsniptgNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFdggkesrskqpispsaeeVWKIKEAISKASSLEEIERLNKllqsgqipgredaenh
Low Complexity Region (SEG)
MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDGGKESRSKQPISPSAEEVWKIKEAISKASSLEEIERLNKLLQSGQIPGREDAENH
Disordered region (IsUnstruct)
***LTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQ*******************************FVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFD*******************************************************
Disordered Region (DISOPRED)
MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDK**************ISPSAEEVWKIKEAISKASSLEEIERLNKLLQS************
Disordered Region (DISEMBL)
MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFK**********ISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDG**************EEVWKIKEAISKASSLEEIERLNKLLQSGQ**********
Disordered Region (DISPRO)
*VKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDGGKESRSKQPISPSAEEVWKIKEAISKASSLEEIERLNKLLQSGQIP********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDGGKESRSKQPISPSAEEVWKIKEAISKASSLEEIERLNKLLQSGQIPGREDAENH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	435	2.2.26 [Sep-21-2011]
P57784	255	U2 small nuclear ribonucl	yes	N/A	0.351	0.6	0.692	2e-57
Q4R8Y8	255	U2 small nuclear ribonucl	N/A	N/A	0.351	0.6	0.692	3e-57
P09661	255	U2 small nuclear ribonucl	yes	N/A	0.351	0.6	0.692	3e-57
Q9V4Q8	265	Probable U2 small nuclear	yes	N/A	0.351	0.577	0.653	2e-55
P43333	249	U2 small nuclear ribonucl	yes	N/A	0.340	0.594	0.562	5e-42
Q9BLB6	253	Probable U2 small nuclear	yes	N/A	0.349	0.600	0.513	2e-41
Q6UWP7	414	Lysocardiolipin acyltrans	no	N/A	0.503	0.528	0.358	1e-40
Q5F3X0	378	Lysocardiolipin acyltrans	no	N/A	0.489	0.563	0.35	2e-40
Q6NYV8	388	Lysocardiolipin acyltrans	yes	N/A	0.487	0.546	0.341	2e-40
Q3UN02	376	Lysocardiolipin acyltrans	no	N/A	0.485	0.561	0.355	9e-40

>sp|P57784|RU2A_MOUSE U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.
Mus musculus (taxid: 10090)

>sp|Q4R8Y8|RU2A_MACFA U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1

 Score =  223 bits (567), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Macaca fascicularis (taxid: 9541)

>sp|P09661|RU2A_HUMAN U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2

 Score =  223 bits (567), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Homo sapiens (taxid: 9606)

>sp|Q9V4Q8|RU2A_DROME Probable U2 small nuclear ribonucleoprotein A' OS=Drosophila melanogaster GN=U2A PE=2 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/153 (65%), Positives = 124/153 (81%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT +LI Q MQY NP ++RELDLRGYKIP IEN+GATLDQFDTID S+ND+RK+D  
Sbjct: 1   MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNL 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           P L RL CL  NNNRI+RI+E L+E +PNL ++ILTGNN+QEL DL+PL    KL+T+CL
Sbjct: 61  PHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV  +P+YR Y+A+K PQ++LLDF K+K K
Sbjct: 121 LINPVSTKPNYREYMAYKFPQLRLLDFRKIKQK 153

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Drosophila melanogaster (taxid: 7227)

>sp|P43333|RU2A_ARATH U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2

 Score =  172 bits (435), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 111/153 (72%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLTADLI +   + N +K+RELDLRG KIPVIEN+GAT DQFDTID S+N+I K++ F
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           P L RL  L  NNNRI RI  NL E LP L +L+LT N +  L ++DPL+++PKL+ L L
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L N +  + +YRLYV  KL  +++LDF K+K K
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAK 153

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BLB6|RU2A_CAEEL Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=sap-1 PE=1 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 112/152 (73%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MV+LT +L  +  Q+ N V  RE++LRG KIPVIENMG T DQFD ID ++NDIRK+D F
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           P   RL+ L+ +NNRI  IA ++   LPNL+TL LT NNI ELGD++PL+   KL+ +  
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL 152
           + NP+ ++ +YR+Y+ +KLP V+++DF++V+L
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRL 152

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Caenorhabditis elegans (taxid: 6239)

>sp|Q6UWP7|LCLT1_HUMAN Lysocardiolipin acyltransferase 1 OS=Homo sapiens GN=LCLAT1 PE=1 SV=1

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 134/248 (54%), Gaps = 29/248 (11%)

Query: 154 ALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRL-KMVLK 212
           AL+  MFG ++I++GD+   G++++ IMNHRTR+DW FLW C+    R S  RL K+ LK
Sbjct: 94  ALLETMFGVKVIITGDAFVPGERSVIIMNHRTRMDWMFLWNCLM---RYSYLRLEKICLK 150

Query: 213 SPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKK 272
           + ++  PG GW MQ A +++I R W  D+    + +DYF DI  P+Q       L    +
Sbjct: 151 ASLKGVPGFGWAMQAAAYIFIHRKWKDDKSHFEDMIDYFCDIHEPLQ-------LLIFPE 203

Query: 273 GKELQKEISKKAKTFVPGAALQD---------------LSNIPTGNQLNAVYDITVGYLG 317
           G +L +    ++  F     LQ                +  +  G  L+AV+DITV Y  
Sbjct: 204 GTDLTENSKSRSNAFAEKNGLQKYEYVLHPRTTGFTFVVDRLREGKNLDAVHDITVAYPH 263

Query: 318 TIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFY--D 375
            IPQSE   + G FP + HFH+ +Y  D+LP S  D ++ W ++ W EKE  L  FY  +
Sbjct: 264 NIPQSEKHLLQGDFPREIHFHVHRYPIDTLPTSKED-LQLWCHKRWEEKEERLRSFYQGE 322

Query: 376 KGYFDGGK 383
           K ++  G+
Sbjct: 323 KNFYFTGQ 330

Acyl-CoA:lysocardiolipin acyltransferase. Possesses both lysophosphatidylinositol acyltransferase (LPIAT) and lysophosphatidylglycerol acyltransferase (LPGAT) activities. Recognizes both monolysocardiolipin and dilysocardiolipin as substrates with a preference for linoleoyl-CoA and oleoyl-CoA as acyl donors. Acts as a remodeling enzyme for cardiolipin, a major membrane polyglycerophospholipid. Converts lysophosphatidic acid (LPA) into phosphatidic acid (PA) with a relatively low activity. Required for establishment of the hematopoietic and endothelial lineages.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 1

>sp|Q5F3X0|LCLT1_CHICK Lysocardiolipin acyltransferase 1 OS=Gallus gallus GN=LCLAT1 PE=2 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 133/240 (55%), Gaps = 27/240 (11%)

Query: 154 ALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRL-KMVLK 212
           AL+ ++FG +++++GD    G++++ IMNHRTR+DW FLW C+    R S  RL K+ LK
Sbjct: 56  ALLEMVFGAKVVVTGDGFIPGERSVIIMNHRTRMDWMFLWNCLL---RYSYLRLEKICLK 112

Query: 213 SPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKK 272
           S ++  PG GW MQ+A F++I+R W+ D+      L YF DI  P+Q       L    +
Sbjct: 113 SSLKSIPGFGWAMQVAAFIFIQRKWEDDKSHFENMLHYFCDIHEPLQ-------LLIFPE 165

Query: 273 GKELQKEISKKAKTFVPGAALQD---------------LSNIPTGNQLNAVYDITVGYLG 317
           G +L      ++  F     L+                +  +  GN L+A++DITV Y  
Sbjct: 166 GTDLTANTKARSNDFAEKNGLRKYEYVLHPRTTGFTFVVECLREGNNLDAIHDITVAYPQ 225

Query: 318 TIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKG 377
            IPQ+E   ++G FP + HFH+++Y  +++P S  + ++ W  + W EKE  L RFY+ G
Sbjct: 226 NIPQTEKHLLNGNFPKEIHFHVQRYPIETVPTSK-EELQLWCQKRWEEKEERLRRFYEGG 284

Acyl-CoA:lysocardiolipin acyltransferase. Possesses both lysophosphatidylinositol acyltransferase (LPIAT) and lysophosphatidylglycerol acyltransferase (LPGAT) activities. Recognizes both monolysocardiolipin and dilysocardiolipin as substrates with a preference for linoleoyl-CoA and oleoyl-CoA as acyl donors. Required for establishment of the hematopoietic and endothelial lineages.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 1

>sp|Q6NYV8|LCLT1_DANRE Lysocardiolipin acyltransferase 1 OS=Danio rerio GN=lclat1 PE=1 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 131/237 (55%), Gaps = 25/237 (10%)

Query: 154 ALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKS 213
           AL+ ++ G +++++GD    G++++ IMNHRTRLDW FLW C+   S     + K+ LK+
Sbjct: 56  ALLELVLGVKVVVTGDGFIPGERSVIIMNHRTRLDWMFLWCCLLRYS--YLRQEKICLKA 113

Query: 214 PIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKG 273
            ++  PG GW MQ+A F++I+R W+ D+  M+  L YF  I+ PVQ       L    +G
Sbjct: 114 ALKSVPGFGWAMQVASFIFIQRRWEDDRTHMSNMLQYFCRIREPVQ-------LLLFPEG 166

Query: 274 KELQKEISKKAKTFVPGAALQD---------------LSNIPTGNQLNAVYDITVGYLGT 318
            +L +    ++  F     LQ                +  +  G+ L+AV+DITV Y   
Sbjct: 167 TDLTENTRARSDEFAEKNGLQKYEYVLHPRTTGFTFIVDTLRGGDNLDAVHDITVAYPQN 226

Query: 319 IPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYD 375
           IPQ+E   + G FP + HFH+++++  S+P +    ++AW  + W EKE  L RFY+
Sbjct: 227 IPQTERHLLAGVFPREIHFHVQRFTVASVP-AGAAGLQAWCQERWREKERRLQRFYE 282

Acyl-CoA:lysocardiolipin acyltransferase. Possesses both lysophosphatidylinositol acyltransferase (LPIAT) and lysophosphatidylglycerol acyltransferase (LPGAT) activities. Recognizes both monolysocardiolipin and dilysocardiolipin as substrates with a preference for linoleoyl-CoA and oleoyl-CoA as acyl donors (By similarity). Required for establishment of the hematopoietic and endothelial lineages.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 1

>sp|Q3UN02|LCLT1_MOUSE Lysocardiolipin acyltransferase 1 OS=Mus musculus GN=Lclat1 PE=2 SV=2

 Score =  164 bits (416), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 125/236 (52%), Gaps = 25/236 (10%)

Query: 154 ALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKS 213
           AL+  MFG  ++++GD+   G++++ IMNHRTR+DW FLW C+   S       K+ LKS
Sbjct: 56  ALLETMFGVRVVITGDAFVPGERSVIIMNHRTRVDWMFLWNCLMRYSYLRVE--KICLKS 113

Query: 214 PIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKG 273
            ++  PG GW MQ+A F++I R W  D+    + +DYF  I  P+Q       L    +G
Sbjct: 114 SLKSVPGFGWAMQVAAFIFIHRKWKDDKSHFEDMIDYFCAIHEPLQ-------LLIFPEG 166

Query: 274 KELQKEISKKAKTFVPGAALQD---------------LSNIPTGNQLNAVYDITVGYLGT 318
            +L +    ++  F     LQ                +  +  G  L+AV+DITV Y   
Sbjct: 167 TDLTENNKARSNDFAEKNGLQKYEYVLHPRTTGFTFVVDRLREGKNLDAVHDITVAYPYN 226

Query: 319 IPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFY 374
           IPQ+E   + G FP + HFH+++Y  DSLP S  D ++ W ++ W EKE  L  FY
Sbjct: 227 IPQTEKHLLLGDFPKEIHFHVQRYPADSLPTSKED-LQLWCHRRWEEKEERLRSFY 281

Acyl-CoA:lysocardiolipin acyltransferase. Possesses both lysophosphatidylinositol acyltransferase (LPIAT) and lysophosphatidylglycerol acyltransferase (LPGAT) activities. Recognizes both monolysocardiolipin and dilysocardiolipin as substrates with a preference for linoleoyl-CoA and oleoyl-CoA as acyl donors. Acts as a remodeling enzyme for cardiolipin, a major membrane polyglycerophospholipid. Converts lysophosphatidic acid (LPA) into phosphatidic acid (PA) with a relatively low activity. Required for establishment of the hematopoietic and endothelial lineages.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
357617796	258	U2 small nuclear ribonucleoprotein A [Da	0.351	0.593	0.764	4e-65
389613272	255	U2 small nuclear ribonucleoprotein A, pa	0.351	0.6	0.771	6e-65
240848727	263	U2 small nuclear ribonucleoprotein A-lik	0.317	0.524	0.764	1e-61
114052002	248	U2 small nuclear ribonucleoprotein A' [B	0.351	0.616	0.738	2e-61
48103229	246	PREDICTED: probable U2 small nuclear rib	0.351	0.621	0.732	1e-60
340722194	246	PREDICTED: probable U2 small nuclear rib	0.349	0.617	0.732	1e-60
380014342	246	PREDICTED: probable U2 small nuclear rib	0.351	0.621	0.732	1e-60
91090564	237	PREDICTED: similar to U2 small nuclear r	0.351	0.645	0.712	2e-60
383849645	246	PREDICTED: probable U2 small nuclear rib	0.351	0.621	0.725	2e-60
158285236	247	AGAP007670-PA [Anopheles gambiae str. PE	0.349	0.615	0.725	3e-60

>gi|357617796|gb|EHJ70998.1| U2 small nuclear ribonucleoprotein A [Danaus plexippus]

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 135/153 (88%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT +LI   MQY NP +DRELDLRGYKIP IEN+GATLDQFDTIDFS+NDIRK+DGF
Sbjct: 1   MVKLTTELIQSSMQYINPCRDRELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLLKRL CLFFNNNRIVR+ ENL++ LPNLETL+LT NN+ ELGDLDPLSTLPKL+TL L
Sbjct: 61  PLLKRLKCLFFNNNRIVRLTENLEQYLPNLETLVLTNNNLSELGDLDPLSTLPKLRTLSL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           +HNPV N+ HYR YVA+KLP+++LLDF K+K K
Sbjct: 121 MHNPVANKQHYRAYVAYKLPELRLLDFRKIKQK 153

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389613272|dbj|BAM19997.1| U2 small nuclear ribonucleoprotein A, partial [Papilio xuthus]

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 118/153 (77%), Positives = 134/153 (87%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT +LI   MQY NP +DRELDLRGYKIP IEN+GATLDQFDTIDFS+ND+RK+DGF
Sbjct: 1   MVKLTTELIQNSMQYMNPCRDRELDLRGYKIPQIENLGATLDQFDTIDFSDNDVRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLLKRL CLFFNNNRIVRI ENL++ LPNLE+LILT NNI ELGDLDPL+TLPKLKTL L
Sbjct: 61  PLLKRLKCLFFNNNRIVRIGENLEQYLPNLESLILTNNNIGELGDLDPLATLPKLKTLSL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           +HNPV N+ HYR YVAFK P+++LLDF K+K K
Sbjct: 121 MHNPVANKQHYRAYVAFKFPELRLLDFRKIKQK 153

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848727|ref|NP_001155389.1| U2 small nuclear ribonucleoprotein A-like [Acyrthosiphon pisum] gi|239789140|dbj|BAH71215.1| ACYPI000509 [Acyrthosiphon pisum]

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 134/153 (87%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT +LI+   Q+ NPVKDRELDLRGYKIP+IENMGATLDQFDTIDFS+NDIRKIDGF
Sbjct: 1   MVKLTTELIMNSYQFINPVKDRELDLRGYKIPLIENMGATLDQFDTIDFSDNDIRKIDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             LKRL  L FNNN IVRI++NL++ LPNLE+LILTGN IQELGDLDPL++LPKLK L L
Sbjct: 61  AYLKRLKNLIFNNNAIVRISDNLEQCLPNLESLILTGNQIQELGDLDPLASLPKLKMLSL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           LHNPV ++ HYRLYVA K+PQV++LDF KVKLK
Sbjct: 121 LHNPVASKEHYRLYVAHKIPQVRILDFRKVKLK 153

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052002|ref|NP_001040446.1| U2 small nuclear ribonucleoprotein A' [Bombyx mori] gi|95102924|gb|ABF51403.1| U2 small nuclear ribonucleoprotein A' [Bombyx mori]

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/153 (73%), Positives = 131/153 (85%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT +LI   MQY NP +DRELDLRGYKIP IEN+GATLDQFDTIDFS+NDIRK+DGF
Sbjct: 1   MVKLTTELIQNSMQYMNPCRDRELDLRGYKIPQIENLGATLDQFDTIDFSDNDIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLLKRL C+  NNNRIVRI ENL+  +PNLE++ILT NNI ELGDLDPLSTLPKL+TL L
Sbjct: 61  PLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           +HNPV N+ HYR YVAFK+P+++L DF K+K K
Sbjct: 121 MHNPVANKNHYRAYVAFKMPELRLWDFRKIKQK 153

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48103229|ref|XP_395530.1| PREDICTED: probable U2 small nuclear ribonucleoprotein A' [Apis mellifera]

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 128/153 (83%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT DLI Q MQY NPVKDRELDLRGYKIP IEN+GATLDQFDTIDFS+NDIRK+DGF
Sbjct: 1   MVKLTPDLIQQSMQYINPVKDRELDLRGYKIPTIENLGATLDQFDTIDFSDNDIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLLKR+  LFFNNNRIVRI E L+  +PNLETL+LTGN IQELGDL+PL+ L  L  LCL
Sbjct: 61  PLLKRIKTLFFNNNRIVRIGEGLEHCIPNLETLMLTGNMIQELGDLEPLTQLKNLTNLCL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV  +P YR YV ++ PQ++LLDF K+K+K
Sbjct: 121 LQNPVSAKPQYRQYVVYRFPQLRLLDFRKIKMK 153

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722194|ref|XP_003399493.1| PREDICTED: probable U2 small nuclear ribonucleoprotein A'-like [Bombus terrestris] gi|350416563|ref|XP_003490993.1| PREDICTED: probable U2 small nuclear ribonucleoprotein A'-like [Bombus impatiens]

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 128/153 (83%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT DLI Q MQY NPVKDRELDLRGYKIP IEN+GATLDQFDTIDFS+NDIRK+DGF
Sbjct: 1   MVKLTPDLIQQSMQYINPVKDRELDLRGYKIPTIENLGATLDQFDTIDFSDNDIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLLKR+  LFFNNNRIVRI E L+  +PNLETL+LTGN IQELGDL+PL+ L  L  LCL
Sbjct: 61  PLLKRIKTLFFNNNRIVRIGEGLEHCIPNLETLMLTGNMIQELGDLEPLTQLKNLTNLCL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV  +P YR YV ++ PQ++LLDF K+K+K
Sbjct: 121 LQNPVSAKPQYRQYVVYRFPQLRLLDFRKIKMK 153

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014342|ref|XP_003691194.1| PREDICTED: probable U2 small nuclear ribonucleoprotein A'-like [Apis florea]

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 128/153 (83%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT DLI Q MQY NPVKDRELDLRGYKIP IEN+GATLDQFDTIDFS+NDIRK+DGF
Sbjct: 1   MVKLTPDLIQQSMQYINPVKDRELDLRGYKIPTIENLGATLDQFDTIDFSDNDIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLLKR+  LFFNNNRIVRI E L+  +PNLETL+LTGN IQELGDL+PL+ L  L  LCL
Sbjct: 61  PLLKRIKTLFFNNNRIVRIGEGLEHCIPNLETLMLTGNMIQELGDLEPLTQLKNLTNLCL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV  +P YR YV ++ PQ++LLDF K+K+K
Sbjct: 121 LQNPVSAKPQYRQYVVYRFPQLRLLDFRKIKMK 153

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090564|ref|XP_971653.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein A [Tribolium castaneum] gi|270013888|gb|EFA10336.1| hypothetical protein TcasGA2_TC012554 [Tribolium castaneum]

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 132/153 (86%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLTA+LI   MQY NPVKDRELDLRGY+IP +EN+GAT DQFDTIDFS+ND+RK+DGF
Sbjct: 1   MVKLTAELIQNSMQYINPVKDRELDLRGYRIPEVENLGATGDQFDTIDFSDNDVRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           P LKRL CL FNNNRIVRI E+L+E +PNLETLILTGN+++ELGD++PL TL KL T+ L
Sbjct: 61  PYLKRLKCLLFNNNRIVRIGEHLEEYIPNLETLILTGNHLEELGDIEPLCTLEKLTTVSL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           LHNP+ ++ HYRLY+ +KLPQ++LLDF KV  K
Sbjct: 121 LHNPITSKQHYRLYLIYKLPQLRLLDFRKVTAK 153

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849645|ref|XP_003700455.1| PREDICTED: probable U2 small nuclear ribonucleoprotein A'-like [Megachile rotundata]

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 128/153 (83%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT +LI Q MQY NPVKDRELDLRGYKIP IEN+GATLDQFDTIDFS+NDIRK+DGF
Sbjct: 1   MVKLTPELIQQSMQYINPVKDRELDLRGYKIPTIENLGATLDQFDTIDFSDNDIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLLKR+  LFFNNNRIVRI E L+  +PNLETL+LTGN IQELGDL+PL+ L  L  LCL
Sbjct: 61  PLLKRIKTLFFNNNRIVRIGEGLEHCIPNLETLMLTGNMIQELGDLEPLTQLKNLTNLCL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV  +P YR YV ++ PQ++LLDF K+K+K
Sbjct: 121 LQNPVSAKPQYRQYVVYRFPQLRLLDFRKIKMK 153

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285236|ref|XP_001687866.1| AGAP007670-PA [Anopheles gambiae str. PEST] gi|157019895|gb|EDO64515.1| AGAP007670-PA [Anopheles gambiae str. PEST]

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 128/153 (83%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLT DLI Q MQY NP +DRELDLRGYKIP IENMGATLDQ+DTIDFS+NDIRK+DGF
Sbjct: 1   MVKLTPDLINQSMQYMNPCRDRELDLRGYKIPQIENMGATLDQYDTIDFSDNDIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           P L RL CL  NNNRIVRI ENL E+LPNL+++ILTGNNIQELGDL+PL+ LP L+TL L
Sbjct: 61  PRLARLKCLLLNNNRIVRIGENLHESLPNLQSIILTGNNIQELGDLEPLTKLPNLETLSL 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV  + HYR YVAF+ P ++LLDF K++ K
Sbjct: 121 LTNPVSTKQHYREYVAFRFPNLRLLDFRKIRQK 153

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
FB|FBgn0033210	265	U2A "U2A" [Drosophila melanoga	0.351	0.577	0.653	1.2e-66
ZFIN|ZDB-GENE-041114-82	277	snrpa1 "small nuclear ribonucl	0.351	0.552	0.718	2.3e-66
UNIPROTKB|F1NAC8	255	SNRPA1 "Uncharacterized protei	0.351	0.6	0.692	3.7e-64
MGI|MGI:1916231	255	Snrpa1 "small nuclear ribonucl	0.351	0.6	0.692	1.6e-63
RGD|2320415	255	LOC100364748 "U2 small nuclear	0.351	0.6	0.692	1.6e-63
RGD|2320494	255	Snrpa1 "small nuclear ribonucl	0.351	0.6	0.692	1.6e-63
UNIPROTKB|A6H788	255	SNRPA1 "Uncharacterized protei	0.351	0.6	0.692	5.4e-63
UNIPROTKB|E2QWU2	255	SNRPA1 "Uncharacterized protei	0.351	0.6	0.692	5.4e-63
UNIPROTKB|P09661	255	SNRPA1 "U2 small nuclear ribon	0.351	0.6	0.692	5.4e-63
UNIPROTKB|F1RWS8	255	SNRPA1 "Uncharacterized protei	0.351	0.6	0.692	5.4e-63

FB|FBgn0033210 U2A "U2A" [Drosophila melanogaster (taxid:7227)]

 Score = 532 (192.3 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
 Identities = 100/153 (65%), Positives = 124/153 (81%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLT +LI Q MQY NP ++RELDLRGYKIP IEN+GATLDQFDTID S+ND+RK+D  
Sbjct:     1 MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNL 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             P L RL CL  NNNRI+RI+E L+E +PNL ++ILTGNN+QEL DL+PL    KL+T+CL
Sbjct:    61 PHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICL 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV  +P+YR Y+A+K PQ++LLDF K+K K
Sbjct:   121 LINPVSTKPNYREYMAYKFPQLRLLDFRKIKQK 153

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005686 "U2 snRNP" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

ZFIN|ZDB-GENE-041114-82 snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Danio rerio (taxid:7955)]

 Score = 578 (208.5 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 110/153 (71%), Positives = 129/153 (84%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTNPV+DRELDLRGYKIPV+EN+GATLDQFDTID S+N++RK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTIDLSDNEVRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLLKRL  L  NNNRI RI ENL++ LP+L+ LILT NNIQELGDLDPL+T+  L  L L
Sbjct:    61 PLLKRLKTLLVNNNRICRIGENLEQALPDLKELILTSNNIQELGDLDPLATVKSLSLLSL 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV  K+PQ+++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLK 153

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NAC8 SNRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 556 (200.8 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
 Identities = 106/153 (69%), Positives = 126/153 (82%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLL+RL  L  NNNRI RI E L++ LP+L  L+LT NNI ELG+LDPLS++  L  L +
Sbjct:    61 PLLRRLKTLLMNNNRICRIGEGLEQALPSLTELVLTNNNISELGELDPLSSIKSLTYLSI 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

MGI|MGI:1916231 Snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Mus musculus (taxid:10090)]

 Score = 544 (196.6 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|2320415 LOC100364748 "U2 small nuclear ribonucleoprotein polypeptide A-like" [Rattus norvegicus (taxid:10116)]

 Score = 544 (196.6 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

RGD|2320494 Snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Rattus norvegicus (taxid:10116)]

 Score = 544 (196.6 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|A6H788 SNRPA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 544 (196.6 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|E2QWU2 SNRPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 544 (196.6 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|P09661 SNRPA1 "U2 small nuclear ribonucleoprotein A'" [Homo sapiens (taxid:9606)]

 Score = 544 (196.6 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

GO:0003723 "RNA binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0005686 "U2 snRNP" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|F1RWS8 SNRPA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 544 (196.6 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 106/153 (69%), Positives = 124/153 (81%)

Query:     1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
             MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
             PLL+RL  L  NNNRI RI E L + LP L  LILT N++ ELGDLDPL++L  L  L +
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
             L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09661	RU2A_HUMAN	No assigned EC number	0.6928	0.3517	0.6	yes	N/A
P57784	RU2A_MOUSE	No assigned EC number	0.6928	0.3517	0.6	yes	N/A
P43333	RU2A_ARATH	No assigned EC number	0.5620	0.3402	0.5943	yes	N/A
Q9V4Q8	RU2A_DROME	No assigned EC number	0.6535	0.3517	0.5773	yes	N/A
Q9BLB6	RU2A_CAEEL	No assigned EC number	0.5131	0.3494	0.6007	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1.51	0.737
3rd Layer	2.3.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	435
cd07990	193	cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acylt	1e-36
PLN02510	374	PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-	5e-33
PLN02380	376	PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate	8e-18
smart00563	118	smart00563, PlsC, Phosphate acyltransferases	2e-09
pfam01553	131	pfam01553, Acyltransferase, Acyltransferase	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
COG0204	255	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyl	5e-04
cd07989	184	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltr	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002

>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like

 Score =  132 bits (334), Expect = 1e-36
 Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 23/201 (11%)

Query: 154 ALMNVMFGTEIILSGDSIDAGDQ-ALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLK 212
            L   + G ++++ GD      + AL I NHR+ +DW  LW       R    RLK+VLK
Sbjct: 2   FLFEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVLWMLADRFGR--LGRLKIVLK 59

Query: 213 SPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQ------------E 260
             +++ P  GW  Q+  F++++R W+ D++ +  QL    D   P              E
Sbjct: 60  DSLKYPPLGGWGWQLGEFIFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEE 119

Query: 261 KQEAAALFKSKKGKELQKEISK-KAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTI 319
           K+E +  F  K G    K +   + K FV  A L+ L      + ++AVYD+T+ Y    
Sbjct: 120 KKERSQEFAEKNGLPPLKHVLLPRTKGFV--AILETL-----RDAVDAVYDVTIAYPDGK 172

Query: 320 PQSEMDAVHGKFPSQAHFHIK 340
           P SE   + G  P + H H++
Sbjct: 173 PPSEQRLLLGGKPREVHVHVR 193

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins. Length = 193

>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate acyltransferase

 Score =  127 bits (322), Expect = 5e-33
 Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 37/244 (15%)

Query: 161 GTEIILSGDSIDAGDQALFIMNHRTRLDWNFLW------GCMFHASRPSAHRLKMVLKSP 214
            T+++ SGD +   ++ L I NHRT +DW +LW      GC+ +        +K VLKS 
Sbjct: 78  KTKVVFSGDKVPPEERVLLIANHRTEVDWMYLWDLALRKGCLGY--------IKYVLKSS 129

Query: 215 IRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPV------------QEKQ 262
           +   P  GW   I  F+ +ER W+ D+  + + L  F D + P+            + K 
Sbjct: 130 LMKLPVFGWAFHIFEFIPVERKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKC 189

Query: 263 EAAALFKSKKG-KELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQ 321
           + +  F ++ G   L   +  K K FV  + LQ+L        L+AVYD+T+GY    P 
Sbjct: 190 QRSQKFAAEHGLPILNNVLLPKTKGFV--SCLQELR-----CSLDAVYDVTIGYKHRCP- 241

Query: 322 SEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYF-D 380
           S +D V G  PS+ H HI++     +P S+ D + AWL   +  K+  L+ FY +G+F +
Sbjct: 242 SFLDNVFGIDPSEVHIHIRRIPLKQIPTSE-DEVSAWLMDRFQLKDQLLSDFYAQGHFPN 300

Query: 381 GGKE 384
            G E
Sbjct: 301 EGTE 304

Length = 374

>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase

 Score = 84.0 bits (208), Expect = 8e-18
 Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 37/239 (15%)

Query: 175 DQALFIMNHRTRLDWNFLW------GCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIA 228
           + AL I NHR+ +DW   W      GC+  A          V+K   +  P  GW M  +
Sbjct: 84  EHALVISNHRSDIDWLVGWILAQRSGCLGSA--------LAVMKKSSKFLPVIGWSMWFS 135

Query: 229 GFLYIERNWDSDQQAMTEQLDYFHDIQHP------------VQEKQEAAALFKSKKGKEL 276
            ++++ER+W  D+  +        D   P             Q K  AA  + + +G  +
Sbjct: 136 EYVFLERSWAKDENTLKSGFQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASRGLPV 195

Query: 277 QKEI-SKKAKTFVPGAALQDL-SNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQ 334
            + +   + K FV  +A+ ++ S +P      A+YD+TV      P   M  +     S 
Sbjct: 196 PRNVLIPRTKGFV--SAVSNMRSFVP------AIYDVTVAVPKGQPAPTMLRIFRGQSSV 247

Query: 335 AHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDGGKESRSKQPISP 393
            H HIK++S   LP +D D +  W   ++  K+A L++ + +  F   +     +P   
Sbjct: 248 VHVHIKRHSMKELPETD-DGIAQWCKDVFVAKDALLDKHFAEDTFGDQEYQDIGRPKKS 305

Length = 376

>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 177 ALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERN 236
           AL + NH++ LD   L   +         R++ V K  + + P  GW++++ G ++I+R+
Sbjct: 1   ALVVANHQSFLDPLVLSALL----PRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRS 56

Query: 237 WD-SDQQAMTEQLD 249
                + A+ E ++
Sbjct: 57  NGRKARAALREAVE 70

Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family. Length = 118

>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 169 DSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIA 228
           +++  G  A+ + NH++ LD   L   +    RP    L  V K  + + P  GW+M++ 
Sbjct: 8   ENLPRGGPAIVVANHQSYLDPLLLSLLLPKRGRP----LVFVAKDELLNLPLLGWLMRLL 63

Query: 229 GFLYIERNWDSDQQAMTEQLDY 250
           G ++I+R    + +     L+Y
Sbjct: 64  GCIFIDR---KNAKDAANTLEY 82

This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function. This family also includes tafazzin, the Barth syndrome gene. Length = 131

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 46  TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
           ++D SNN +  I       L  L  L  + N +  I+      LP+L +L L+GNN+
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 65  RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
            L  L  +NNR+  I +   + LPNL+ L L+GNN+  +   +  S LP L++L L  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 11/159 (6%)

Query: 15  YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK-IDGFPLLKRLSCLFFNN 73
            +N      LDL G KI  +      L   + +D SNN I + +     LK LS L  +N
Sbjct: 182 LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN 241

Query: 74  NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL 133
           N++  + E++  NL NLETL L+ N I     +  L +L  L+ L L  N + N      
Sbjct: 242 NKLEDLPESIG-NLSNLETLDLSNNQIS---SISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 134 YVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSID 172
            +   L    LL+                  IL  ++I 
Sbjct: 298 LL--LLLLELLLNLLLTLKALE----LKLNSILLNNNIL 330

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 8/129 (6%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA 80
           +ELDL   KI  + +    L     +D S ND+  +      L  L+ L  + N+I  + 
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL- 201

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
               E L  LE L L+ N+I EL  L  LS L  L  L L +N + + P     +   L 
Sbjct: 202 PPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNKLEDLP---ESIG-NLS 255

Query: 141 QVKLLDFSK 149
            ++ LD S 
Sbjct: 256 NLETLDLSN 264

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 88  PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
            NLETL L+ N I    DL PLS LP L+TL L  N +
Sbjct: 1   TNLETLDLSNNQIT---DLPPLSNLPNLETLDLSGNKI 35

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 16  TNPVKDRELDLRGYKIPVIENMGA-----TLDQFDTIDFSNNDIRK----IDGFPLLKRL 66
                 R L L       I ++        L    ++D + N +R     +     L  L
Sbjct: 62  LPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSL 121

Query: 67  SCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
                +NN I  I   +     NL+ L L+ N I+ L    PL  LP LK L L  N + 
Sbjct: 122 DL---DNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLS 176

Query: 127 NRPHYRLYVAFKLPQVKLLDFS 148
           + P     +   L  +  LD S
Sbjct: 177 DLP----KLLSNLSNLNNLDLS 194

Length = 394

>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 22/135 (16%)

Query: 109 LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSG 168
           +  L     L L+    + RP  R ++ F              L  L+ ++FG  + + G
Sbjct: 11  ILFLLLPLPLALIALFRLRRPVLRRWLRF--------------LVLLLLLLFGLRVEVEG 56

Query: 169 DS-IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKM-VLKSPIRHAPGPGWVMQ 226
              +  G  AL + NH++ LD   L         P     K  + K P+      GW+++
Sbjct: 57  LENLPKGGPALVVANHQSFLDP-LLLSLALPRRGPVRFVAKKELFKVPLL-----GWLLR 110

Query: 227 IAGFLYIERNWDSDQ 241
           + G + ++R    D+
Sbjct: 111 LLGAIPVDRENPDDE 125

Length = 255

>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 152 LKALMNVMFGTEIILSG-DSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMV 210
           L+ L+  + G  + + G +++      + + NH++ LD   + G            ++ V
Sbjct: 1   LRLLL-RLLGVRVRVEGLENLPPKGPVIIVANHQSYLDP-LVLGAALP------RPIRFV 52

Query: 211 LKSPIRHAPGPGWVMQIAGFLYIER-NWDSDQQAM 244
            K  +   P  GW++++ G + I+R N  S ++A+
Sbjct: 53  AKKELFKIPFLGWLLRLLGAIPIDRGNGRSAREAL 87

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins. Length = 184

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 41  LDQFDTIDFSNNDIRKIDGFPLL--KRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
           L    ++D  NN+I  I     L    L  L  ++N+I  +   L  NLPNL+ L L+ N
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFN 173

Query: 99  NIQELGDLDPLSTLPKLKTLCLLHN 123
           ++ +L  L  LS L  L  L L  N
Sbjct: 174 DLSDLPKL--LSNLSNLNNLDLSGN 196

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	435
KOG1505|consensus	346		100.0
PLN02380	376	1-acyl-sn-glycerol-3-phosphate acyltransferase	100.0
PLN02510	374	probable 1-acyl-sn-glycerol-3-phosphate acyltransf	100.0
PRK14014	301	putative acyltransferase; Provisional	100.0
KOG1644|consensus	233		100.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.92
cd07990	193	LPLAT_LCLAT1-like Lysophospholipid Acyltransferase	99.92
KOG4194|consensus	873		99.58
KOG4194|consensus	873		99.55
KOG0617|consensus	264		99.55
KOG0444|consensus	1255		99.47
KOG0444|consensus	1255		99.43
KOG0617|consensus	264		99.43
KOG2848|consensus	276		99.4
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
KOG1259|consensus	490		99.36
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.32
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.31
KOG0472|consensus	565		99.26
KOG0618|consensus	1081		99.26
KOG0472|consensus	565		99.25
KOG1259|consensus	490		99.24
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.19
KOG4237|consensus	498		99.16
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.1
KOG4237|consensus	498		99.1
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.08
KOG0532|consensus	722		98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
KOG0618|consensus	1081		98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
KOG2739|consensus	260		98.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.85
KOG0531|consensus	414		98.84
KOG0532|consensus	722		98.83
KOG2123|consensus	388		98.79
KOG1859|consensus	1096		98.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.78
KOG0531|consensus	414		98.76
KOG3207|consensus	505		98.74
PRK15018	245	1-acyl-sn-glycerol-3-phosphate acyltransferase; Pr	98.71
KOG1859|consensus	1096		98.7
KOG3207|consensus	505		98.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.62
PLN03150	623	hypothetical protein; Provisional	98.6
PTZ00261	355	acyltransferase; Provisional	98.49
COG0204	255	PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferas	98.48
PLN03150	623	hypothetical protein; Provisional	98.48
KOG4579|consensus	177		98.44
KOG4579|consensus	177		98.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.33
KOG1909|consensus	382		98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
cd07991	211	LPLAT_LPCAT1-like Lysophospholipid Acyltransferase	98.25
KOG1644|consensus	233		98.25
PLN02901	214	1-acyl-sn-glycerol-3-phosphate acyltransferase	98.07
KOG3665|consensus	699		98.02
KOG4658|consensus	889		98.0
KOG2982|consensus	418		97.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.94
KOG1909|consensus	382		97.93
KOG4658|consensus	889		97.87
KOG2982|consensus	418		97.84
PF01553	132	Acyltransferase: Acyltransferase; InterPro: IPR002	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.72
cd07988	163	LPLAT_ABO13168-like Lysophospholipid Acyltransfera	97.67
KOG3665|consensus	699		97.61
TIGR00530	130	AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltra	97.51
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.37
PLN02833	376	glycerol acyltransferase family protein	97.32
KOG2120|consensus	419		97.29
cd07993	205	LPLAT_DHAPAT-like Lysophospholipid Acyltransferase	97.26
PLN02783	315	diacylglycerol O-acyltransferase	97.24
KOG2120|consensus	419		97.2
KOG2739|consensus	260		97.15
PRK03355	783	glycerol-3-phosphate acyltransferase; Validated	97.06
cd07992	203	LPLAT_AAK14816-like Lysophospholipid Acyltransfera	97.02
smart00563	118	PlsC Phosphate acyltransferases. Function in phosp	96.98
KOG2123|consensus	388		96.9
PRK15386	426	type III secretion protein GogB; Provisional	96.85
PRK04974	818	glycerol-3-phosphate acyltransferase; Validated	96.75
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	96.75
PTZ00374	1108	dihydroxyacetone phosphate acyltransferase; Provis	96.69
TIGR03703	799	plsB glycerol-3-phosphate O-acyltransferase. Membe	96.64
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.46
cd07985	235	LPLAT_GPAT Lysophospholipid Acyltransferases (LPLA	96.18
KOG3763|consensus	585		95.99
cd06551	187	LPLAT Lysophospholipid acyltransferases (LPLATs) o	95.96
cd07986	210	LPLAT_ACT14924-like Lysophospholipid Acyltransfera	95.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.7
KOG0473|consensus	326		95.58
PLN02588	525	glycerol-3-phosphate acyltransferase	95.57
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.87
smart00370	26	LRR Leucine-rich repeats, outliers.	94.87
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.12
KOG0473|consensus	326		93.84
KOG3864|consensus	221		93.56
PLN02177	497	glycerol-3-phosphate acyltransferase	93.52
KOG1947|consensus	482		93.01
cd07989	184	LPLAT_AGPAT-like Lysophospholipid Acyltransferases	92.38
cd07987	212	LPLAT_MGAT-like Lysophospholipid Acyltransferases	91.7
PRK11915	621	glycerol-3-phosphate acyltransferase; Reviewed	91.05
KOG3864|consensus	221		90.85
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.21
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.13
smart00370	26	LRR Leucine-rich repeats, outliers.	90.13
PLN02499	498	glycerol-3-phosphate acyltransferase	89.07
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.9
KOG4341|consensus	483		88.32
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.14
KOG3729|consensus	715		86.09
KOG3763|consensus	585		85.8
KOG1947|consensus	482		85.37
cd07983	189	LPLAT_DUF374-like Lysophospholipid Acyltransferase	85.29
KOG4308|consensus	478		84.2
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.4

>KOG1505|consensus

Probab=100.00  E-value=6e-45  Score=346.75  Aligned_cols=215  Identities=32%  Similarity=0.647  Sum_probs=188.9

Q ss_pred             hhcccEEEEecCCCc----ccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceecc
Q psy18204        158 VMFGTEIILSGDSID----AGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYI  233 (435)
Q Consensus       158 ~~~~~~l~lsgn~i~----~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl  233 (435)
                      ++.+.++...++..+    .+++++.++||++++||+++|..+  .+.+..++.++++|++++|+|++||+|+.++|||+
T Consensus        50 ~~~~~~v~~~~~~~~~~~~~~e~alli~NH~~~~Dwl~~w~~~--~~~G~l~~~~~~lK~~lk~~Pi~Gw~~~~~~fiFl  127 (346)
T KOG1505|consen   50 WYAGSEVNGYGDDVTGDKYGKERALLIANHQSEVDWLYLWTYA--QRKGVLGNVKIVLKKSLKYLPIFGWGMWFHGFIFL  127 (346)
T ss_pred             hcccceeeeeeecccccccCCCceEEEeccccccchhhHHHHH--hcCCchhhhhHHHhhHHHhCcchheeeeecceEEE
Confidence            555556665554444    579999999999999999999554  44455679999999999999999999999999999


Q ss_pred             ccChHHhHHHHHHHHHHhhcCCCchh------------hhHHHhhhhcCccCcc-ccHHHHhhhcccccCCccccccCCC
Q psy18204        234 ERNWDSDQQAMTEQLDYFHDIQHPVQ------------EKQEAAALFKSKKGKE-LQKEISKKAKTFVPGAALQDLSNIP  300 (435)
Q Consensus       234 ~R~~~~d~~~~~~~~~~l~~~~~~~~------------~~~~~~~~f~~~eG~~-~~~~l~pr~~~~~~~~~~~~l~~~~  300 (435)
                      +|+|++|++.+.+.++++.+...|+|            ++++.++.|+.++|.+ +.|+++||++||..  +++.++   
T Consensus       128 ~R~~~~d~~~l~~~~k~l~~~~~~~wLlLFPEGT~~~~~~~~~S~~fa~k~GLp~l~nvLlPRt~Gf~~--~l~~lr---  202 (346)
T KOG1505|consen  128 ERNWEKDEKTLISLLKHLKDSPDPYWLLLFPEGTRFTEKKHERSQEFAAKNGLPHLKNVLLPRTKGFKA--ALEELR---  202 (346)
T ss_pred             ecchhhhHHHHHHHHHHhccCCCceEEEEecCCCcccHHHHHHHHHHHHHcCCCCccceeccCcchHHH--HHHHhc---
Confidence            99999999999999999999977763            4567888999999987 78999999999998  677665   


Q ss_pred             CCCCCCEEEEEEeecCCCCCCC--ccccccCCCCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy18204        301 TGNQLNAVYDITVGYLGTIPQS--EMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGY  378 (435)
Q Consensus       301 ~~~~~~~vyD~Ti~Y~~~~~~~--~~~~l~g~~p~~v~i~~~~~~i~~ip~~~~~~~~~wl~~~~~eKd~ll~~~~~~g~  378 (435)
                        +.++||||+||+|++..+++  .+..+.|..|++||+|+||+||++||. |++++++||+++|+|||++|++||++|+
T Consensus       203 --~~l~~IyD~Ti~y~~~~~~~~~~~~~~~~~~~~~v~ihirr~pi~~IP~-de~~~~~WL~~~f~~KDkll~~fy~tg~  279 (346)
T KOG1505|consen  203 --NSLDAIYDVTIGYSKAEPPPYETMLFLLGGEPKEVHIHIRRFPIKEIPE-DEEELANWLYDRFEEKDKLLEEFYETGS  279 (346)
T ss_pred             --CCCceEEEEEEecCCCCCCchhhheeeccCCCceeEEEEEecccccCCC-ChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence              79999999999999998887  455667888999999999999999998 5699999999999999999999999999


Q ss_pred             CCCC
Q psy18204        379 FDGG  382 (435)
Q Consensus       379 F~~~  382 (435)
                      ||+.
T Consensus       280 f~~~  283 (346)
T KOG1505|consen  280 FPGI  283 (346)
T ss_pred             CCCC
Confidence            9998

>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase

Probab=100.00  E-value=4.9e-43  Score=338.22  Aligned_cols=229  Identities=25%  Similarity=0.465  Sum_probs=196.8

Q ss_pred             HHHHhhhhcccEEEEecCCCc----ccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhh
Q psy18204        152 LKALMNVMFGTEIILSGDSID----AGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQI  227 (435)
Q Consensus       152 l~~l~~~~~~~~l~lsgn~i~----~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~  227 (435)
                      +..+.++++++++.+.|+...    +.+++++++||++.+||+.+|.++...  +..++.++++|++++++|++||+|+.
T Consensus        57 ~~~l~~~~~Gvkv~V~gd~~~~~~~g~e~~lIisNHqS~~D~l~l~~l~~r~--~~l~~~~~vlKkeL~~iPv~Gw~~~~  134 (376)
T PLN02380         57 LIWLVDWWAGVKVQLYADEETFELMGKEHALVISNHRSDIDWLVGWILAQRS--GCLGSALAVMKKSSKFLPVIGWSMWF  134 (376)
T ss_pred             HHHHHHHcCCeEEEEEecchhhccCCCCcEEEEECCChhHHHHHHHHHhhhc--ccccceeEeeHHHhhhccHHHHHHHH
Confidence            445678899999999987653    567899999999999999998886443  34678999999999999999999999


Q ss_pred             hceeccccChHHhHHHHHHHHHHhhcCCCch------------hhhHHHhhhhcCccCcc-ccHHHHhhhcccccCCccc
Q psy18204        228 AGFLYIERNWDSDQQAMTEQLDYFHDIQHPV------------QEKQEAAALFKSKKGKE-LQKEISKKAKTFVPGAALQ  294 (435)
Q Consensus       228 ~~~ifl~R~~~~d~~~~~~~~~~l~~~~~~~------------~~~~~~~~~f~~~eG~~-~~~~l~pr~~~~~~~~~~~  294 (435)
                      ++++|++|+|++|++.+.+.++.+++.+.++            .++++.+..|+.++|.| +.|+|+||++||..  .++
T Consensus       135 ~~~IfIdR~~~~d~~~l~~~~~~l~~~~~~~wllIFPEGTR~~~~k~~~s~~fA~~~glP~l~hvL~PRt~Gf~~--~l~  212 (376)
T PLN02380        135 SEYVFLERSWAKDENTLKSGFQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASRGLPVPRNVLIPRTKGFVS--AVS  212 (376)
T ss_pred             cCCEEecCCchhHHHHHHHHHHHHhhCCCccEEEEecCcCCCCchhhHHHHHHHHHcCCCCcccccCcccccHHH--HHH
Confidence            9999999999999999999999998764443            23445677888888886 78999999999987  565


Q ss_pred             cccCCCCCCCCCEEEEEEeecCCCC-CCCccccccCCCCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy18204        295 DLSNIPTGNQLNAVYDITVGYLGTI-PQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRF  373 (435)
Q Consensus       295 ~l~~~~~~~~~~~vyD~Ti~Y~~~~-~~~~~~~l~g~~p~~v~i~~~~~~i~~ip~~~~~~~~~wl~~~~~eKd~ll~~~  373 (435)
                      .++     +.+++||||||+|+++. +|++++++.|+ |.+|||||||+|++++|.+| +++++||+++|+|||++|++|
T Consensus       213 ~L~-----~~~~aiyDvTi~y~~~~~~psl~~il~g~-p~~v~v~vrr~pi~~iP~~~-~~~~~WL~~~w~eKD~lle~~  285 (376)
T PLN02380        213 NMR-----SFVPAIYDVTVAVPKGQPAPTMLRIFRGQ-SSVVHVHIKRHSMKELPETD-DGIAQWCKDVFVAKDALLDKH  285 (376)
T ss_pred             Hhh-----hcccEEEEEEEEecCCCCCccHHHHhCCC-CeEEEEEEEEEECCcCcCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence            544     68999999999999865 58899999988 89999999999999999865 799999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCCC
Q psy18204        374 YDKGYFDGGKESRSKQPI  391 (435)
Q Consensus       374 ~~~g~F~~~~~~~~~~p~  391 (435)
                      |++|+||++.+...++|.
T Consensus       286 ~~~g~F~~~~~~~~~~~~  303 (376)
T PLN02380        286 FAEDTFGDQEYQDIGRPK  303 (376)
T ss_pred             HhcCCCCCCcccCCCCCc
Confidence            999999999877764553

>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase

Probab=100.00  E-value=4.6e-41  Score=324.80  Aligned_cols=223  Identities=33%  Similarity=0.606  Sum_probs=189.0

Q ss_pred             HhhhhcccEEEEecCCCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccc
Q psy18204        155 LMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIE  234 (435)
Q Consensus       155 l~~~~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~  234 (435)
                      +.+++.+.++.++|+.+...+.+++++||++.+||+++|.+....+  ..+..++++|++|.++|++||+|+.+++||++
T Consensus        72 l~e~~~gvkv~v~Ge~l~~~~~~IiiaNH~S~~D~l~l~~l~~r~~--~~~~~kfv~K~eL~~iP~~Gw~~~~~g~I~v~  149 (374)
T PLN02510         72 LFEKINKTKVVFSGDKVPPEERVLLIANHRTEVDWMYLWDLALRKG--CLGYIKYVLKSSLMKLPVFGWAFHIFEFIPVE  149 (374)
T ss_pred             HHHHhcCeEEEEEeecCCCCCcEEEEECCCchHHHHHHHHHHHhcC--CCcccEEEEeHHHhhchHHHHHHHHcCCeeee
Confidence            3566788999999988878889999999999999999988765433  35789999999999999999999999999999


Q ss_pred             cChHHhHHHHHHHHHHhhcCCCchh------------hhHHHhhhhcCccCcc-ccHHHHhhhcccccCCccccccCCCC
Q psy18204        235 RNWDSDQQAMTEQLDYFHDIQHPVQ------------EKQEAAALFKSKKGKE-LQKEISKKAKTFVPGAALQDLSNIPT  301 (435)
Q Consensus       235 R~~~~d~~~~~~~~~~l~~~~~~~~------------~~~~~~~~f~~~eG~~-~~~~l~pr~~~~~~~~~~~~l~~~~~  301 (435)
                      |+|++|++.+++.++.+++...+++            ..+.++..++.+.|.| +.+++.||++||..  .++.++    
T Consensus       150 R~~~~D~~~l~~~l~~lk~~~~~~~LvIFPEGTR~t~~~~~~s~~~A~k~glPil~~vL~PRt~Gf~~--~l~~L~----  223 (374)
T PLN02510        150 RKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKCQRSQKFAAEHGLPILNNVLLPKTKGFVS--CLQELR----  223 (374)
T ss_pred             CCccccHHHHHHHHHHHhccCCCcEEEEeCCcCCCCccccchHHHHHHHcCCCcceeEEcCccccHHH--HHHHHH----
Confidence            9999999999999998886544432            1123344555555556 67789999999988  565554    


Q ss_pred             CCCCCEEEEEEeecCCCCCCCccccccCCCCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy18204        302 GNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDG  381 (435)
Q Consensus       302 ~~~~~~vyD~Ti~Y~~~~~~~~~~~l~g~~p~~v~i~~~~~~i~~ip~~~~~~~~~wl~~~~~eKd~ll~~~~~~g~F~~  381 (435)
                       +.+++|||+||+|++. +|++++++.|..|.+|||||||+||++||.+ ++++++||+++|+|||++|++||++|+||+
T Consensus       224 -~~l~~IyDvTi~Y~~~-~Ps~~~~~~g~~p~~vhihvrr~pi~~iP~~-~~~~~~WL~~~w~eKD~lL~~f~~~g~Fp~  300 (374)
T PLN02510        224 -CSLDAVYDVTIGYKHR-CPSFLDNVFGIDPSEVHIHIRRIPLKQIPTS-EDEVSAWLMDRFQLKDQLLSDFYAQGHFPN  300 (374)
T ss_pred             -HHHHhheeEEEEeCCC-CCCHHHHhcCCCCcEEEEEEEEEECccccCc-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence             5799999999999987 4789999999889999999999999999975 588999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy18204        382 GKESRSK  388 (435)
Q Consensus       382 ~~~~~~~  388 (435)
                      +......
T Consensus       301 ~~~~~~~  307 (374)
T PLN02510        301 EGTEGEL  307 (374)
T ss_pred             CCcCCCC
Confidence            8876554

>PRK14014 putative acyltransferase; Provisional

Probab=100.00  E-value=1e-33  Score=268.51  Aligned_cols=200  Identities=21%  Similarity=0.310  Sum_probs=164.6

Q ss_pred             hhhhcccEEEEecCC-CcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccc
Q psy18204        156 MNVMFGTEIILSGDS-IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIE  234 (435)
Q Consensus       156 ~~~~~~~~l~lsgn~-i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~  234 (435)
                      ..+..+.++.+.|.. +....++++++||++.+||++++....    ...+..++++|++|.++|++||+|+.++|+|++
T Consensus        67 ~~~~~g~k~~V~G~e~l~~~~~~IiisNHqS~~D~l~l~~~~~----~~~~~~kfv~K~eL~~iP~~G~~~~~~~~ifi~  142 (301)
T PRK14014         67 LRLLPRTQWDVEGLEGLSKKGWYLVISNHQSWVDILVLQYVFN----RRIPMLKFFLKQELIWVPFLGLAWWALDFPFMK  142 (301)
T ss_pred             HHHhCCcEEEEEcCCCCCCCCCEEEEECCCcHHHHHHHHHHHh----hccCceEEEehHHhhhcccHHHHHHHcCCeEEe
Confidence            455778999999965 666789999999999999999876542    124568999999999999999999999999999


Q ss_pred             cChH-----------HhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCccc------------cHHHHhhhcccccCC
Q psy18204        235 RNWD-----------SDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKEL------------QKEISKKAKTFVPGA  291 (435)
Q Consensus       235 R~~~-----------~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~------------~~~l~pr~~~~~~~~  291 (435)
                      |++.           +|.+.+++.++.+.+.         +.....+||||+.            .|++.||++||+.  
T Consensus       143 R~~~~~~~~~p~~~~~d~~~~~~a~~~~~~~---------~~~l~IFPEGTR~t~~k~~~~~~~~~~lL~pk~ggf~~--  211 (301)
T PRK14014        143 RYSKAYLAKNPELKGKDLETTRRACEKFKRM---------PTTIVNFVEGTRFTPEKHQQQQSPYQHLLKPKAGGIAF--  211 (301)
T ss_pred             ccchhhhhhchhhhhhHHHHHHHHHHHHhcC---------CcEEEEeccceecCcccccccCCCcccccCCCCccHHH--
Confidence            9753           3455566666655432         2235677999863            4788999999987  


Q ss_pred             ccccccCCCCCCCCCEEEEEEeecCCCCCCCccccccCCCCCeEEEEEEEEeCCCCCCCC-------HHHHHHHHHHHHH
Q psy18204        292 ALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSD-------TDAMKAWLNQIWA  364 (435)
Q Consensus       292 ~~~~l~~~~~~~~~~~vyD~Ti~Y~~~~~~~~~~~l~g~~p~~v~i~~~~~~i~~ip~~~-------~~~~~~wl~~~~~  364 (435)
                      +++.+     ++.+++||||||+|++ .+|+++++++|+ +++|||||+++||+++|.+|       ++++++||+++|+
T Consensus       212 a~~~~-----~~~~~~I~dvti~y~~-~~~~~~~~~~g~-~~~v~v~i~~~pi~~~~~~~y~~d~~~~~~~~~Wl~~~w~  284 (301)
T PRK14014        212 ALNAM-----GEQFDGLLDVTIVYPD-GRPSFWDLLSGR-VKKIVVHVRLLPIPEELIGDYFNDKEFRRRFQQWLNQLWQ  284 (301)
T ss_pred             HHHhh-----hccCCEEEEEEEEeCC-CCCCHHHhhcCC-ccEEEEEEEEEEcccccccccccChHHHHHHHHHHHHHHH
Confidence            55433     4789999999999998 468899999998 67999999999999999875       5889999999999


Q ss_pred             HHHHHHHHHHHcC
Q psy18204        365 EKEAHLNRFYDKG  377 (435)
Q Consensus       365 eKd~ll~~~~~~g  377 (435)
                      |||++|++||+..
T Consensus       285 ~Kd~~l~~~~~~~  297 (301)
T PRK14014        285 EKDQLIEQLLAQY  297 (301)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999863

>KOG1644|consensus

Probab=100.00  E-value=2e-33  Score=240.48  Aligned_cols=153  Identities=65%  Similarity=1.005  Sum_probs=149.1

Q ss_pred             CccccHHHHhcccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc
Q psy18204          1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA   80 (435)
Q Consensus         1 ~~~lt~~~i~~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~   80 (435)
                      |||+|++++.+.++|.+..+-++++|++.++..++++...+.++..+||++|++..++.|+.+++|.+|.|++|+|++|.
T Consensus         1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~   80 (233)
T KOG1644|consen    1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID   80 (233)
T ss_pred             CccccHHHHhhchhhhhhccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeec
Confidence            89999999999999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             chhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +.+...+|+|.+|.|++|+|.++.+++.+..||+|++|.+-+|++++...||.|+++.+|+|+.||++++...
T Consensus        81 p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen   81 PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            9998899999999999999999999999999999999999999999999999999999999999999988776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.92  E-value=4e-26  Score=198.52  Aligned_cols=153  Identities=53%  Similarity=0.852  Sum_probs=75.2

Q ss_pred             CccccHHHHhcccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc
Q psy18204          1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA   80 (435)
Q Consensus         1 ~~~lt~~~i~~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~   80 (435)
                      |||||.++|++.+++.|+.++++|+|++|.|+.|++....+.+|+.|+||+|.|+.++++..+++|++|++++|+|+++.
T Consensus         1 ~~~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    1 MVRLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred             CccccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence            89999999999999999999999999999999999887678999999999999999999999999999999999999997


Q ss_pred             chhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +.+...+|+|++|+|++|+|.++.++..++.+++|+.|+|.+||++..+.||.+++..+|+|+.||...+.-.
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~  153 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE  153 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence            7665579999999999999999999999999999999999999999999999999999999999998877654

>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like

Probab=99.92  E-value=1.7e-25  Score=200.80  Aligned_cols=176  Identities=32%  Similarity=0.625  Sum_probs=144.3

Q ss_pred             hhhhcccEEEEecCCCc-ccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccc
Q psy18204        156 MNVMFGTEIILSGDSID-AGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIE  234 (435)
Q Consensus       156 ~~~~~~~~l~lsgn~i~-~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~  234 (435)
                      .+++++.++.+.|+... ..+.+++++||++.+||+++|......+  ..+..++++|++++++|++||+|+..+++|++
T Consensus         4 ~~~~~g~~i~v~G~~~~~~~~~~iiv~NH~s~~D~~~~~~~~~~~~--~~~~~~~v~K~~l~~~p~~g~~~~~~~~i~v~   81 (193)
T cd07990           4 FEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVLWMLADRFG--RLGRLKIVLKDSLKYPPLGGWGWQLGEFIFLK   81 (193)
T ss_pred             EEEecCeEEEEEecCccCCCccEEEEEcCCcccCHHHHHHHHHHcC--ccceEEeeehhhhhcCChhhHHHhhCeeEEEE
Confidence            45567889999998765 7789999999999999999988875432  24678999999999999999999999999999


Q ss_pred             cChHHhHHHHHHHHHHhhcCCCch------------hhhHHHhhhhcCccCcc-ccHHHHhhhcccccCCccccccCCCC
Q psy18204        235 RNWDSDQQAMTEQLDYFHDIQHPV------------QEKQEAAALFKSKKGKE-LQKEISKKAKTFVPGAALQDLSNIPT  301 (435)
Q Consensus       235 R~~~~d~~~~~~~~~~l~~~~~~~------------~~~~~~~~~f~~~eG~~-~~~~l~pr~~~~~~~~~~~~l~~~~~  301 (435)
                      |+|++|.+.+.+.++.+.+...+.            ..+...+..|+.++|.+ +.|+|+||++||..  .++.++    
T Consensus        82 R~~~~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~~~~~~~~~~~a~k~~~p~l~~vL~PR~~G~~~--~~~~l~----  155 (193)
T cd07990          82 RKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEKKERSQEFAEKNGLPPLKHVLLPRTKGFVA--ILETLR----  155 (193)
T ss_pred             CChHHhHHHHHHHHHHHhcCCCCcEEEEeCcccCCCHHHHHHHHHHHHHcCCCCcceeeCCCchHHHH--HHHHHh----
Confidence            999999999999999888753222            12233444666677765 67889999999987  666554    


Q ss_pred             CCCCCEEEEEEeecCCCCCCCccccccCCCCCeEEEEEE
Q psy18204        302 GNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIK  340 (435)
Q Consensus       302 ~~~~~~vyD~Ti~Y~~~~~~~~~~~l~g~~p~~v~i~~~  340 (435)
                       +.+++||||||+|++..+++....+.|..|.+||||||
T Consensus       156 -~~~~~v~Dvti~y~~~~~~~~~~~~~~~~~~~v~~~i~  193 (193)
T cd07990         156 -DAVDAVYDVTIAYPDGKPPSEQRLLLGGKPREVHVHVR  193 (193)
T ss_pred             -cCCCeEEEEEEEecCCCCchhhhhccCCCCCEEEEEEC
Confidence             68899999999999988777665777888999999985

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.

>KOG4194|consensus

Probab=99.58  E-value=4.2e-16  Score=152.85  Aligned_cols=153  Identities=25%  Similarity=0.335  Sum_probs=110.5

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      ++.|+.|||+.|.|+.|| +.+..-.+++.|+|++|.|+.+.  .|.++.+|.+|.|++|+|+.+|...|..++.|+.|+
T Consensus       148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD  227 (873)
T ss_pred             HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence            445566666666666665 33444467788888888887775  577777888888888888888888877788888888


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-hhhcc----cEEEEecC
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-NVMFG----TEIILSGD  169 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-~~~~~----~~l~lsgn  169 (435)
                      |..|+|.....+ .|.++++|+.|.|..|.|..+.+.   +++.|.++++|+|+.|+++.+. .|.++    ..++++.|
T Consensus       228 LnrN~irive~l-tFqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  228 LNRNRIRIVEGL-TFQGLPSLQNLKLQRNDISKLDDG---AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             ccccceeeehhh-hhcCchhhhhhhhhhcCcccccCc---ceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            888888776554 777788888888888888777665   4567778888888888887763 34444    66778887


Q ss_pred             CCccc
Q psy18204        170 SIDAG  174 (435)
Q Consensus       170 ~i~~~  174 (435)
                      .+...
T Consensus       304 aI~ri  308 (873)
T KOG4194|consen  304 AIQRI  308 (873)
T ss_pred             hhhee
Confidence            77643

>KOG4194|consensus

Probab=99.55  E-value=1.9e-15  Score=148.33  Aligned_cols=173  Identities=21%  Similarity=0.289  Sum_probs=142.2

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      ..|.++++|+++++..|.++.||..+....+|+.|+|.+|.|+.+.  .++.++.|+.||||.|.|+.|+...|..-.++
T Consensus        96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni  175 (873)
T KOG4194|consen   96 EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI  175 (873)
T ss_pred             HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence            3577899999999999999999988887888999999999999986  68889999999999999999998887777899


Q ss_pred             CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhh-----cccEEE
Q psy18204         91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM-----FGTEII  165 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~-----~~~~l~  165 (435)
                      ++|+|++|+|+.+.. +.|.++.+|.+|.|+.|.|+.+|..   +++.+++|+.|||.+|+|.......     +...+.
T Consensus       176 ~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  176 KKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             eEEeecccccccccc-ccccccchheeeecccCcccccCHH---HhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            999999999999885 6899999999999999999999985   5678999999999999987553322     225666


Q ss_pred             EecCCCccc-ccceeecCCcccccc
Q psy18204        166 LSGDSIDAG-DQALFIMNHRTRLDW  189 (435)
Q Consensus       166 lsgn~i~~~-~~~~~i~nh~~~lD~  189 (435)
                      +..|++..- .-+.+.++....++.
T Consensus       252 lqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  252 LQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             hhhcCcccccCcceeeecccceeec
Confidence            777776533 233344444444443

>KOG0617|consensus

Probab=99.55  E-value=1.5e-16  Score=133.70  Aligned_cols=159  Identities=23%  Similarity=0.257  Sum_probs=136.0

Q ss_pred             cccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204         11 QCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPN   89 (435)
Q Consensus        11 ~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~   89 (435)
                      ..+.+.++++++.|.|+.|+++.+|.-++.+.+|+.|++++|+|+.+| +++.+++|+.|+++-|++..+|.++ +.+|.
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~  103 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPA  103 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCch
Confidence            345677888999999999999999988889999999999999999998 8999999999999999999998887 99999


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH----hhhhcccEEE
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL----MNVMFGTEII  165 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l----~~~~~~~~l~  165 (435)
                      |+.|+|++|++.+-.-...|..+..|+.|.|++|.+.-+|.    -++++.+|+.|.+..|.+-.+    .......++.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~----dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP----DVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH  179 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh----hhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence            99999999999653322378888899999999999998887    368999999999999987543    4455557778


Q ss_pred             EecCCCccc
Q psy18204        166 LSGDSIDAG  174 (435)
Q Consensus       166 lsgn~i~~~  174 (435)
                      +.||.+...
T Consensus       180 iqgnrl~vl  188 (264)
T KOG0617|consen  180 IQGNRLTVL  188 (264)
T ss_pred             cccceeeec
Confidence            888876633

>KOG0444|consensus

Probab=99.47  E-value=3.4e-15  Score=147.55  Aligned_cols=155  Identities=22%  Similarity=0.243  Sum_probs=80.5

Q ss_pred             cCCCCcceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         15 YTNPVKDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      ++.++.|+.+.++.|++.  .||..+-.+..|+.||||.|+++..| ++...+++..|+||+|+|..||..+|-++..|-
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            344445555555555443  34433333455555555555555444 444444455555555555555544444444444


Q ss_pred             eeecCCCcCCCCCCCCCCCCC-------------------------------------------------CCCCEEEeec
Q psy18204         92 TLILTGNNIQELGDLDPLSTL-------------------------------------------------PKLKTLCLLH  122 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~~~l~~l-------------------------------------------------~~L~~L~L~~  122 (435)
                      .|+||+|++..+|+  ....+                                                 .+|..++||.
T Consensus       154 fLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  154 FLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             hhccccchhhhcCH--HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            45555554444443  33333                                                 3344444555


Q ss_pred             CCccccccchHHHHhcCCccceeeecchhHHHH----hhhhcccEEEEecCCCcccc
Q psy18204        123 NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL----MNVMFGTEIILSGDSIDAGD  175 (435)
Q Consensus       123 N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l----~~~~~~~~l~lsgn~i~~~~  175 (435)
                      |.+..+|.    .++++++|+.|+||+|+++.+    ..|.....++++.|.+...+
T Consensus       232 N~Lp~vPe----cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP  284 (1255)
T KOG0444|consen  232 NNLPIVPE----CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP  284 (1255)
T ss_pred             cCCCcchH----HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch
Confidence            55544444    356777777888888877654    44555566677766655433

>KOG0444|consensus

Probab=99.43  E-value=7.7e-15  Score=145.05  Aligned_cols=139  Identities=22%  Similarity=0.217  Sum_probs=119.8

Q ss_pred             HHhcccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCC--CcC-CCCCCCCCCEEEccCCccccccchhh
Q psy18204          8 LIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIR--KID-GFPLLKRLSCLFFNNNRIVRIAENLQ   84 (435)
Q Consensus         8 ~i~~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~--~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~   84 (435)
                      +-..|..++.+.+|+.|.++.|++..+-+.++.++.|+.+++..|++.  ++| .+..+.-|+.|+||+|+++++|.++ 
T Consensus        44 L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-  122 (1255)
T KOG0444|consen   44 LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-  122 (1255)
T ss_pred             hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-
Confidence            344556778889999999999999999888889999999999999995  555 6889999999999999999999998 


Q ss_pred             cCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhH
Q psy18204         85 ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL  152 (435)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l  152 (435)
                      ..-+++-.|+||+|+|..+|. ..+.++..|-.|+||+|.+..+|..    +..+..|+.|+|++|.+
T Consensus       123 E~AKn~iVLNLS~N~IetIPn-~lfinLtDLLfLDLS~NrLe~LPPQ----~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYNNIETIPN-SLFINLTDLLFLDLSNNRLEMLPPQ----IRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             hhhcCcEEEEcccCccccCCc-hHHHhhHhHhhhccccchhhhcCHH----HHHHhhhhhhhcCCChh
Confidence            788999999999999999997 4778899999999999999988873    45666677777777765

>KOG0617|consensus

Probab=99.43  E-value=3.1e-15  Score=125.83  Aligned_cols=141  Identities=18%  Similarity=0.238  Sum_probs=127.3

Q ss_pred             cccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccc--cccchhhcCC
Q psy18204         11 QCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIV--RIAENLQENL   87 (435)
Q Consensus        11 ~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~--~i~~~~~~~l   87 (435)
                      .++...++.+|+.|++.+|+|..+|..++.++.|+.|+++-|.+..+| +|+.++.|+.|+|++|++.  .+|.++| .+
T Consensus        48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff-~m  126 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF-YM  126 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchh-HH
Confidence            456677788999999999999999999999999999999999999998 8999999999999999998  4666664 78


Q ss_pred             CCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh
Q psy18204         88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV  158 (435)
Q Consensus        88 ~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~  158 (435)
                      ..|+.|+|+.|.+.-++.  ..+++++|+.|.+.+|.+-++|.    .++.+..|+.|.+++|+++.+...
T Consensus       127 ~tlralyl~dndfe~lp~--dvg~lt~lqil~lrdndll~lpk----eig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  127 TTLRALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLLSLPK----EIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHHHHhcCCCcccCCh--hhhhhcceeEEeeccCchhhCcH----HHHHHHHHHHHhcccceeeecChh
Confidence            899999999999999987  88999999999999999999887    578999999999999999866443

>KOG2848|consensus

Probab=99.40  E-value=5.2e-12  Score=112.47  Aligned_cols=186  Identities=16%  Similarity=0.231  Sum_probs=120.1

Q ss_pred             hhhhcccEEEEecCC-CcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccc
Q psy18204        156 MNVMFGTEIILSGDS-IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIE  234 (435)
Q Consensus       156 ~~~~~~~~l~lsgn~-i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~  234 (435)
                      +.++.+..+.+.|.+ +....+++.++|||+.+|++.+...       -..++.+++|.+|+|+|++||+|++.|.+|++
T Consensus        69 ~~y~~g~r~ev~g~E~L~~~~p~ViVsNHQS~LDil~m~~i-------~p~~cvviaKr~L~yvp~~gl~m~L~gvvfId  141 (276)
T KOG2848|consen   69 MKYLLGLRFEVRGEENLPKSKPAVIVSNHQSSLDILGMGSI-------WPKNCVVIAKRSLFYVPIFGLAMYLSGVVFID  141 (276)
T ss_pred             HhhhcceEEEEechhhCCccCCeEEEecchhHHHHHHHHhh-------cCCceEEEEeeeeeecchHHHHHHHcCceEEe
Confidence            455677889999855 5666799999999999999987544       14689999999999999999999999999999


Q ss_pred             cChHHhHH-HHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc-ccHHHHhhhcc-cccCCccccccCCCCCCCCCEEEEE
Q psy18204        235 RNWDSDQQ-AMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE-LQKEISKKAKT-FVPGAALQDLSNIPTGNQLNAVYDI  311 (435)
Q Consensus       235 R~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~-~~~~l~pr~~~-~~~~~~~~~l~~~~~~~~~~~vyD~  311 (435)
                      |....+.- .+.+..+.++..         ....|.+||||+ ....++|..|| |+.  +.+        -+++ |+=|
T Consensus       142 R~r~~~Ai~~l~~~~~~mkk~---------~~kvWvFPEGTRn~~g~llPFKKGAF~l--Avq--------aqVP-IVPv  201 (276)
T KOG2848|consen  142 RSRREKAIDTLDKCAERMKKE---------NRKVWVFPEGTRNKEGRLLPFKKGAFHL--AVQ--------AQVP-IVPV  201 (276)
T ss_pred             cCCHHHHHHHHHHHHHHHHhC---------CeeEEEccCCccCCCCcccccccceeee--ehh--------cCCC-EEEE
Confidence            98655544 555555555442         234677899998 34578998887 554  222        1232 3333


Q ss_pred             Ee-ecCCCCCCCccccccCCCCCeEEEEEEEEeCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy18204        312 TV-GYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVS--DTDAMKAWLNQIWAEKEAHLNRFYDKGYF  379 (435)
Q Consensus       312 Ti-~Y~~~~~~~~~~~l~g~~p~~v~i~~~~~~i~~ip~~--~~~~~~~wl~~~~~eKd~ll~~~~~~g~F  379 (435)
                      ++ .|..-.++..-.+.+|.      +.|+.  ++.||.+  ..++..+-+++   -++++++.|.+-+.-
T Consensus       202 v~ssy~~f~~~~~k~f~sG~------v~V~v--L~pI~TeglT~ddv~~L~~~---~R~~M~~~~~ei~~~  261 (276)
T KOG2848|consen  202 VFSSYGDFYSTKEKVFNSGN------VIVRV--LPPIPTEGLTKDDVDVLSDE---CRSAMLETFKEISAE  261 (276)
T ss_pred             EEecccccccCccceeecce------EEEEE--cCCCCccCCCcccHHHHHHH---HHHHHHHHHHHhchh
Confidence            33 44444344443444444      22222  3555554  12223333322   256777777776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=2.5e-13  Score=118.36  Aligned_cols=122  Identities=26%  Similarity=0.420  Sum_probs=45.7

Q ss_pred             ecCCCcccccccccCCCCCCEEEccCCCCCCcCCCC-CCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCC
Q psy18204         26 LRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFP-LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG  104 (435)
Q Consensus        26 L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~  104 (435)
                      |..+.|..++... +...++.|+|++|.|+.+++++ .+.+|+.|++++|.|+.+ +++ ..+++|++|++++|+|+.++
T Consensus         4 lt~~~i~~~~~~~-n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l-~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    4 LTANMIEQIAQYN-NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGL-PGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S---TT-----TT--EEE--SS---S-C
T ss_pred             ccccccccccccc-cccccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCc-cChhhhhhcccCCCCCCccc
Confidence            4455666666555 3557899999999999999887 589999999999999999 455 78999999999999999986


Q ss_pred             CCCCC-CCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204        105 DLDPL-STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus       105 ~~~~l-~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      .  .+ ..+++|+.|+|++|.|..+...  ..+..+|+|+.|++.+|++..
T Consensus        81 ~--~l~~~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   81 E--GLDKNLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             H--HHHHH-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGG
T ss_pred             c--chHHhCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccc
Confidence            4  33 4689999999999999877653  246789999999999999873

>KOG1259|consensus

Probab=99.36  E-value=3.7e-14  Score=129.18  Aligned_cols=131  Identities=25%  Similarity=0.276  Sum_probs=113.2

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN   99 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (435)
                      -|++|||++|.|+.|.....-++.++.|++|+|.|..++++..+++|+.|+||+|.++.+ .++...+.|.++|.|+.|.
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhh
Confidence            578999999999999877777899999999999999999899999999999999999998 6666788899999999999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh
Q psy18204        100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM  156 (435)
Q Consensus       100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~  156 (435)
                      |.+++.   +.++-+|..|++++|+|..+...+  .++++|-|.++.+.+|.+..+.
T Consensus       364 iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  364 IETLSG---LRKLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             Hhhhhh---hHhhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCccccc
Confidence            988774   577888999999999998765543  4789999999999999887543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.32  E-value=3.6e-12  Score=141.76  Aligned_cols=112  Identities=20%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             cccCCCCcceEEEecCCCcc-cccc-cccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIP-VIEN-MGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~-~i~~-~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      ..+..+++|+.|+|++|.+. .+|. .+..+.+|++|+|++|.+++....+.+++|++|+|++|.++...+..++.+++|
T Consensus        87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCC
Confidence            34566777777777777776 5663 333566677777776666543222344555555555555553222222455555


Q ss_pred             CeeecCCCcCCC-CCCCCCCCCCCCCCEEEeecCCcc
Q psy18204         91 ETLILTGNNIQE-LGDLDPLSTLPKLKTLCLLHNPVI  126 (435)
Q Consensus        91 ~~L~Ls~N~i~~-l~~~~~l~~l~~L~~L~L~~N~i~  126 (435)
                      ++|+|++|.+.. ++.  .+.++++|++|+|++|.++
T Consensus       167 ~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~  201 (968)
T PLN00113        167 KVLDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLV  201 (968)
T ss_pred             CEEECccCcccccCCh--hhhhCcCCCeeeccCCCCc
Confidence            555555555432 222  3444444555555544443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.31  E-value=3.7e-12  Score=141.62  Aligned_cols=134  Identities=22%  Similarity=0.248  Sum_probs=63.3

Q ss_pred             cCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         15 YTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      +.++++|+.|++++|.+. .+|..+..+++|++|+|++|.+.+. + .++.+++|+.|++++|+++...+..++.+++|+
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            444455555555555543 3444444455555555555554432 2 344555555555555555432222224555555


Q ss_pred             eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc-cccchHHHHhcCCccceeeecchhHH
Q psy18204         92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN-RPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~-~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +|++++|+++...+ ..+..+++|+.|++++|.++. +|.    .+..+++|+.|++++|.+.
T Consensus       240 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        240 HLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPP----SIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             EEECcCceeccccC-hhHhCCCCCCEEECcCCeeeccCch----hHhhccCcCEEECcCCeec
Confidence            55555555542211 144555555555555555442 222    2344555555555555543

>KOG0472|consensus

Probab=99.26  E-value=3e-14  Score=134.42  Aligned_cols=164  Identities=23%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             cccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCC-----------------------CCCC
Q psy18204         11 QCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPL-----------------------LKRL   66 (435)
Q Consensus        11 ~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~-----------------------l~~L   66 (435)
                      .+.+.+++.+++.|+.++|.+..++..++.+..|+.++..+|+++.++ ++.+                       +++|
T Consensus       106 lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L  185 (565)
T KOG0472|consen  106 LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRL  185 (565)
T ss_pred             ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHH
Confidence            344455555566666666666555555555555555555555555554 3333                       4455


Q ss_pred             CEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceee
Q psy18204         67 SCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLD  146 (435)
Q Consensus        67 ~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ld  146 (435)
                      ++|++..|-++.+|+++ +++.+|+.|+|..|.|..+|   .|.+|..|..|.++.|.|..+|..   ..+++++|.+||
T Consensus       186 ~~ld~~~N~L~tlP~~l-g~l~~L~~LyL~~Nki~~lP---ef~gcs~L~Elh~g~N~i~~lpae---~~~~L~~l~vLD  258 (565)
T KOG0472|consen  186 KHLDCNSNLLETLPPEL-GGLESLELLYLRRNKIRFLP---EFPGCSLLKELHVGENQIEMLPAE---HLKHLNSLLVLD  258 (565)
T ss_pred             HhcccchhhhhcCChhh-cchhhhHHHHhhhcccccCC---CCCccHHHHHHHhcccHHHhhHHH---Hhcccccceeee
Confidence            55555555555555555 55556666666666665555   345555566666666665555542   445778888888


Q ss_pred             ecchhHHHHhhhhc----ccEEEEecCCCcccccceeec
Q psy18204        147 FSKVKLKALMNVMF----GTEIILSGDSIDAGDQALFIM  181 (435)
Q Consensus       147 l~~n~l~~l~~~~~----~~~l~lsgn~i~~~~~~~~i~  181 (435)
                      +.+|+++++.+..+    ...+++++|.++.-+..+..+
T Consensus       259 LRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  259 LRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             ccccccccCchHHHHhhhhhhhcccCCccccCCcccccc
Confidence            88888877655443    366778888777655554444

>KOG0618|consensus

Probab=99.26  E-value=3.6e-13  Score=138.87  Aligned_cols=172  Identities=24%  Similarity=0.317  Sum_probs=135.4

Q ss_pred             ccCCCCcceEEEecCCCcccccccc-c-------------------------CCCCCCEEEccCCCCCCc--CCCCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMG-A-------------------------TLDQFDTIDFSNNDIRKI--DGFPLLKR   65 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~-~-------------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~   65 (435)
                      ....+..|+.|+|..|+|..+|..+ .                         ..+.|+.|.+.+|.+++-  +.+-++.+
T Consensus       305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h  384 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH  384 (1081)
T ss_pred             cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence            3344788999999999998776321 1                         122356666777777654  45778889


Q ss_pred             CCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCcccee
Q psy18204         66 LSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLL  145 (435)
Q Consensus        66 L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~L  145 (435)
                      |+.|+|++|+|..+|...+.++..|++|+||+|+++.+++  .+..|+.|++|...+|.+...|.     +..+++|+.+
T Consensus       385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~--tva~~~~L~tL~ahsN~l~~fPe-----~~~l~qL~~l  457 (1081)
T KOG0618|consen  385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD--TVANLGRLHTLRAHSNQLLSFPE-----LAQLPQLKVL  457 (1081)
T ss_pred             eeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH--HHHhhhhhHHHhhcCCceeechh-----hhhcCcceEE
Confidence            9999999999999998888899999999999999999985  88889999999999999999886     4789999999


Q ss_pred             eecchhHHHHh-----hhhcccEEEEecCC-CcccccceeecCCccccccchh
Q psy18204        146 DFSKVKLKALM-----NVMFGTEIILSGDS-IDAGDQALFIMNHRTRLDWNFL  192 (435)
Q Consensus       146 dl~~n~l~~l~-----~~~~~~~l~lsgn~-i~~~~~~~~i~nh~~~lD~l~l  192 (435)
                      |++.|.++...     .+.....++++||. ...+...+-.+++++..||-..
T Consensus       458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999998652     23445899999998 5566666667777777776554

>KOG0472|consensus

Probab=99.25  E-value=1.9e-13  Score=129.08  Aligned_cols=134  Identities=22%  Similarity=0.267  Sum_probs=107.9

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      ..+...|++||...|-++.+|...+.+.+|+.|+|..|.|..+|.|++|..|+.|.++.|.|+-+|.....++++|..||
T Consensus       179 ~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  179 HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence            33455677777777777888877777888888888888888888888888888888888888888877767888888888


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      |..|+++++|+  .+..+.+|..|++++|.|+.+|.    .++++ +|+.|-+.+|.+..+
T Consensus       259 LRdNklke~Pd--e~clLrsL~rLDlSNN~is~Lp~----sLgnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  259 LRDNKLKEVPD--EICLLRSLERLDLSNNDISSLPY----SLGNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             ccccccccCch--HHHHhhhhhhhcccCCccccCCc----ccccc-eeeehhhcCCchHHH
Confidence            88888888886  66778888888888888888876    35777 888888888888665

>KOG1259|consensus

Probab=99.24  E-value=1.2e-12  Score=119.54  Aligned_cols=121  Identities=31%  Similarity=0.396  Sum_probs=107.6

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCC-CCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF-PLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      ..-.++++.|+++.|.|..+.+ +..+++|+.||||+|.++.+.+. ..+-++++|.|+.|.|..+ .++ +.+-+|..|
T Consensus       303 vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL-~KLYSLvnL  379 (490)
T KOG1259|consen  303 VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGL-RKLYSLVNL  379 (490)
T ss_pred             hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhh-Hhhhhheec
Confidence            3446899999999999999988 56799999999999999999864 4677899999999999988 566 788999999


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhc
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK  138 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~  138 (435)
                      ++++|+|..+..+..++++|.|++|.|.+||+..+++||..++..
T Consensus       380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~  424 (490)
T KOG1259|consen  380 DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLAR  424 (490)
T ss_pred             cccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHH
Confidence            999999999998889999999999999999999999998766543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.19  E-value=2.7e-11  Score=127.91  Aligned_cols=35  Identities=11%  Similarity=0.198  Sum_probs=18.1

Q ss_pred             ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC
Q psy18204         21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID   58 (435)
Q Consensus        21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~   58 (435)
                      |+.|++++|+|+.+|..   +++|+.|+|++|.|+.++
T Consensus       284 L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp  318 (788)
T PRK15387        284 LCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLP  318 (788)
T ss_pred             cCEEECcCCcccccccc---ccccceeECCCCccccCC
Confidence            44444555544444432   245666666666665554

>KOG4237|consensus

Probab=99.16  E-value=1.1e-12  Score=123.75  Aligned_cols=86  Identities=29%  Similarity=0.434  Sum_probs=65.9

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEE-ccCCccccccchhhcCCCCCCee
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLF-FNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~-ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      ++..++++|..|+|+.|| ..|..+.+|+.||||+|.|+.+.  +|.++.+|..|. .++|+|++++.+.|+++..|+.|
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            346788899999999888 66888999999999999998884  688888876654 44588998888777777666666


Q ss_pred             ecCCCcCCCC
Q psy18204         94 ILTGNNIQEL  103 (435)
Q Consensus        94 ~Ls~N~i~~l  103 (435)
                      .+.-|++.-+
T Consensus       146 llNan~i~Ci  155 (498)
T KOG4237|consen  146 LLNANHINCI  155 (498)
T ss_pred             hcChhhhcch
Confidence            6666665443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.12  E-value=1e-10  Score=123.54  Aligned_cols=138  Identities=20%  Similarity=0.271  Sum_probs=75.6

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchh--------------
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENL--------------   83 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~--------------   83 (435)
                      +++|+.|++++|+|+.+|...   .+|..|++++|.|+.++.+.  .+|+.|+|++|+|+.+|...              
T Consensus       301 p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~lp--~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~  375 (788)
T PRK15387        301 PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTLP--SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT  375 (788)
T ss_pred             ccccceeECCCCccccCCCCc---ccccccccccCccccccccc--cccceEecCCCccCCCCCCCcccceehhhccccc
Confidence            367999999999998877532   23444555555555444322  24555555555555443211              


Q ss_pred             --hcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh----
Q psy18204         84 --QENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN----  157 (435)
Q Consensus        84 --~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~----  157 (435)
                        .....+|+.|+|++|+|+.++..     .++|+.|++++|.++.+|..       ..+|+.|++++|.++.+..    
T Consensus       376 ~LP~l~~~L~~LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~l-------~~~L~~L~Ls~NqLt~LP~sl~~  443 (788)
T PRK15387        376 SLPALPSGLKELIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPML-------PSGLLSLSVYRNQLTRLPESLIH  443 (788)
T ss_pred             cCcccccccceEEecCCcccCCCCc-----ccCCCEEEccCCcCCCCCcc-------hhhhhhhhhccCcccccChHHhh
Confidence              00113456666666666555431     24566666666666665541       2345666666666665433    


Q ss_pred             hhcccEEEEecCCCc
Q psy18204        158 VMFGTEIILSGDSID  172 (435)
Q Consensus       158 ~~~~~~l~lsgn~i~  172 (435)
                      ......+++++|.+.
T Consensus       444 L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        444 LSSETTVNLEGNPLS  458 (788)
T ss_pred             ccCCCeEECCCCCCC
Confidence            223356666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.10  E-value=1.5e-10  Score=122.66  Aligned_cols=100  Identities=22%  Similarity=0.292  Sum_probs=58.8

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      +++.|+|++|+|+.+|..+.  .+|+.|++++|.|+.++ .+.  .+|+.|+|++|.++.+|..+.   .+|+.|+|++|
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N  272 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP---SALQSLDLFHN  272 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh---CCCCEEECcCC
Confidence            56666666666666664332  36666666666666665 232  356666666666666655442   35666666666


Q ss_pred             cCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204         99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus        99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      +|+.++.  .+  .++|+.|++++|.++.+|.
T Consensus       273 ~L~~LP~--~l--~~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        273 KISCLPE--NL--PEELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             ccCcccc--cc--CCCCcEEECCCCccccCcc
Confidence            6666554  22  2356666666666665543

>KOG4237|consensus

Probab=99.10  E-value=6.5e-12  Score=118.60  Aligned_cols=111  Identities=29%  Similarity=0.375  Sum_probs=93.7

Q ss_pred             cccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccC-CCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSN-NDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~-N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      ..|+.+.+|+.|||+.|+|+.|. ..|.++.+|.+|-+.+ |+|+.++  .|.+|..|+.|.++-|++.-+..+.|..++
T Consensus        85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            36899999999999999999775 7788888877766655 9999997  699999999999999999999889889999


Q ss_pred             CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCC
Q psy18204         89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP  124 (435)
Q Consensus        89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~  124 (435)
                      +|..|.+-.|.+..+.. ..+..+..++++.+..|+
T Consensus       165 ~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hcchhcccchhhhhhcc-ccccchhccchHhhhcCc
Confidence            99999999998887765 266667777777777666

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.08  E-value=1.3e-10  Score=123.12  Aligned_cols=76  Identities=24%  Similarity=0.312  Sum_probs=37.6

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      +|+.|++++|+++.+|..+  ..+|+.|+|++|.+..+| .+.  .+|+.|++++|+|+.+|..+.   ++|+.|+|++|
T Consensus       221 nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N  293 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP---EELRYLSVYDN  293 (754)
T ss_pred             CCCEEECCCCccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC---CCCcEEECCCC
Confidence            5667777777666666432  234555555555555544 221  244555555555544443321   24444444444


Q ss_pred             cCCC
Q psy18204         99 NIQE  102 (435)
Q Consensus        99 ~i~~  102 (435)
                      +|+.
T Consensus       294 ~Lt~  297 (754)
T PRK15370        294 SIRT  297 (754)
T ss_pred             cccc
Confidence            4443

>KOG0532|consensus

Probab=98.99  E-value=6.8e-12  Score=123.44  Aligned_cols=147  Identities=26%  Similarity=0.324  Sum_probs=85.1

Q ss_pred             CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      ..|..|.|..|.|..||..++.+..|+.|||+.|+++.++ .+..|+ |+.|.+++|+++.+|+.+ +.++.|..|+.+.
T Consensus        98 ~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~  175 (722)
T KOG0532|consen   98 VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCccc-ccchhHHHhhhhh
Confidence            3445555555555556655566666777777777777665 444443 677777777777776666 4666677777777


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh----hhhcccEEEEecCCCcc
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM----NVMFGTEIILSGDSIDA  173 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~----~~~~~~~l~lsgn~i~~  173 (435)
                      |.|..++.  .+..+.+|+.|++..|.+..+|..    +..+ .|..||+|.|+++.+.    ...-+..+.+.+|.+..
T Consensus       176 nei~slps--ql~~l~slr~l~vrRn~l~~lp~E----l~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  176 NEIQSLPS--QLGYLTSLRDLNVRRNHLEDLPEE----LCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhchH--HhhhHHHHHHHHHhhhhhhhCCHH----HhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            77766665  555555566665555555555542    2222 2555666666554432    22233455555555543


Q ss_pred             c
Q psy18204        174 G  174 (435)
Q Consensus       174 ~  174 (435)
                      .
T Consensus       249 P  249 (722)
T KOG0532|consen  249 P  249 (722)
T ss_pred             C
Confidence            3

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=3.8e-10  Score=81.02  Aligned_cols=59  Identities=41%  Similarity=0.578  Sum_probs=28.8

Q ss_pred             CCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCC
Q psy18204         65 RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP  124 (435)
Q Consensus        65 ~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~  124 (435)
                      +|++|++++|+|+.++++.|.++++|++|++++|.|+.+++ +.|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCc
Confidence            34445555555555544444445555555555555544443 244445555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=5.1e-10  Score=80.37  Aligned_cols=59  Identities=36%  Similarity=0.559  Sum_probs=50.3

Q ss_pred             CCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcC
Q psy18204         42 DQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI  100 (435)
Q Consensus        42 ~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i  100 (435)
                      ++|+.|++++|.|+.++  .|..+++|++|++++|+|+.++++.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46788888888888886  578888899999999999988888888899999999998875

...

>KOG0618|consensus

Probab=98.96  E-value=5.4e-11  Score=123.10  Aligned_cols=134  Identities=22%  Similarity=0.291  Sum_probs=86.4

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-C-----------------------CCCCCCCCEEEccC
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-G-----------------------FPLLKRLSCLFFNN   73 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~-----------------------l~~l~~L~~L~ls~   73 (435)
                      +.+|+.++++.|+++.+|+..+.+.+|+.|+..+|.|+.++ .                       ...++.|++|+|..
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            44677777777777777777777777777777777665543 2                       23456666666666


Q ss_pred             Cccccccchhhc-------------------------CCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc
Q psy18204         74 NRIVRIAENLQE-------------------------NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR  128 (435)
Q Consensus        74 N~i~~i~~~~~~-------------------------~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~  128 (435)
                      |+|..+|+..+.                         .++.|+.|++.+|.+++-- +..+.++++|+.|+|++|.+..+
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC-FPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc-hhhhccccceeeeeecccccccC
Confidence            666665543221                         1123444455555554321 12466778888888888888888


Q ss_pred             ccchHHHHhcCCccceeeecchhHHHH
Q psy18204        129 PHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus       129 ~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      |..   .+.+++.|+.|++|+|+++.+
T Consensus       399 pas---~~~kle~LeeL~LSGNkL~~L  422 (1081)
T KOG0618|consen  399 PAS---KLRKLEELEELNLSGNKLTTL  422 (1081)
T ss_pred             CHH---HHhchHHhHHHhcccchhhhh
Confidence            775   456788888888888887654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=5e-10  Score=111.91  Aligned_cols=166  Identities=26%  Similarity=0.293  Sum_probs=108.4

Q ss_pred             CCCCcceEEEecCCCcccccccccCCC-CCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         16 TNPVKDRELDLRGYKIPVIENMGATLD-QFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~~~~~~l~-~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      ...+.++.|++.+|.++.++.....+. +|+.|++++|.+..++ .+..+++|+.|++++|+++.++... +.+++|+.|
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L  191 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNL  191 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhhe
Confidence            344678888888888888887776664 8888888888888884 7788888888888888888887655 477888888


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH----HhhhhcccEEEEecC
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA----LMNVMFGTEIILSGD  169 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~----l~~~~~~~~l~lsgn  169 (435)
                      ++++|+++.++.  ....+..|+.|.+++|++...+.    .+..+.++..|.+.+|++..    +........+.+++|
T Consensus       192 ~ls~N~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         192 DLSGNKISDLPP--EIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             eccCCccccCch--hhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence            888888888875  33345557777777775433332    23455555555555555432    122222355555555


Q ss_pred             CCcccccceeecCCcccccc
Q psy18204        170 SIDAGDQALFIMNHRTRLDW  189 (435)
Q Consensus       170 ~i~~~~~~~~i~nh~~~lD~  189 (435)
                      .+..... +.-......+|+
T Consensus       266 ~i~~i~~-~~~~~~l~~L~~  284 (394)
T COG4886         266 QISSISS-LGSLTNLRELDL  284 (394)
T ss_pred             ccccccc-ccccCccCEEec
Confidence            5543333 333333444443

>KOG2739|consensus

Probab=98.87  E-value=9e-10  Score=99.46  Aligned_cols=131  Identities=31%  Similarity=0.439  Sum_probs=107.4

Q ss_pred             cceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCC--ccc-cccchhhcCCCCCCeee
Q psy18204         20 KDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNN--RIV-RIAENLQENLPNLETLI   94 (435)
Q Consensus        20 ~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N--~i~-~i~~~~~~~l~~L~~L~   94 (435)
                      ..+.+.+.++.-.  .+......+..|+.|.+.+..++.+.+++.|++|+.|.+|.|  +++ .++.-+ ..+|+|++|+
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~   97 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLN   97 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEe
Confidence            3444555543322  355565667789999999999999999999999999999999  555 343333 6779999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchh
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVK  151 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~  151 (435)
                      |++|+|..+..+..+..+.+|..|++.+|..+....||..++.-+++|++||-....
T Consensus        98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen   98 LSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             ecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            999999998888899999999999999999999999999999999999999865543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=9.7e-10  Score=109.87  Aligned_cols=120  Identities=30%  Similarity=0.346  Sum_probs=61.7

Q ss_pred             EEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCC--CCCEEEccCCccccccchhhcCCCCCCeeecCCCcCC
Q psy18204         24 LDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ  101 (435)
Q Consensus        24 L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~--~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~  101 (435)
                      |++..|.+..-......++.+..|++.+|.++.++....+.  +|+.|++++|.+..++..+ +.+++|+.|++++|+++
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhh
Confidence            44454444222222222355566666666666655332222  5666666666666654444 45566666666666666


Q ss_pred             CCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecch
Q psy18204        102 ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKV  150 (435)
Q Consensus       102 ~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n  150 (435)
                      +++.  ....+++|+.|++++|.++.+|..    +..+..|..|++++|
T Consensus       177 ~l~~--~~~~~~~L~~L~ls~N~i~~l~~~----~~~~~~L~~l~~~~N  219 (394)
T COG4886         177 DLPK--LLSNLSNLNNLDLSGNKISDLPPE----IELLSALEELDLSNN  219 (394)
T ss_pred             hhhh--hhhhhhhhhheeccCCccccCchh----hhhhhhhhhhhhcCC
Confidence            5553  222455566666666666655551    223344555566665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.85  E-value=1.3e-09  Score=105.42  Aligned_cols=137  Identities=22%  Similarity=0.162  Sum_probs=59.6

Q ss_pred             cCCCCcceEEEecCCCccc-------ccccccCCCCCCEEEccCCCCCCcC--CCCCC---CCCCEEEccCCcccc----
Q psy18204         15 YTNPVKDRELDLRGYKIPV-------IENMGATLDQFDTIDFSNNDIRKID--GFPLL---KRLSCLFFNNNRIVR----   78 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~-------i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l---~~L~~L~ls~N~i~~----   78 (435)
                      +.+.++++.|+++++.+..       ++..+..+++|+.|++++|.+....  .+..+   ++|+.|++++|+++.    
T Consensus        47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~  126 (319)
T cd00116          47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR  126 (319)
T ss_pred             HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence            3344455555555555442       1122333555566666655554221  12112   335556665555552    


Q ss_pred             -ccchhhcCC-CCCCeeecCCCcCCCCCC---CCCCCCCCCCCEEEeecCCcccccc-chHHHHhcCCccceeeecchhH
Q psy18204         79 -IAENLQENL-PNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLHNPVINRPH-YRLYVAFKLPQVKLLDFSKVKL  152 (435)
Q Consensus        79 -i~~~~~~~l-~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~l~~L~~Ldl~~n~l  152 (435)
                       +...+ ..+ ++|+.|++++|.++....   ...+..+++|+.|++++|.++.... .....+..+++|+.|++++|.+
T Consensus       127 ~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         127 LLAKGL-KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHH-HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence             11111 333 555555555555542110   0123344555555555555542110 0001122334555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0531|consensus

Probab=98.84  E-value=3.2e-10  Score=113.95  Aligned_cols=130  Identities=28%  Similarity=0.383  Sum_probs=73.4

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC-CCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      +..+..+.++.|.|..+.+.+..+.+|+.|++.+|.|..+.+ +..+++|++|++++|.|+.+ .++ ..++.|+.|+++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l-~~l~~L~~L~l~  148 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGL-STLTLLKELNLS  148 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cch-hhccchhhheec
Confidence            344555556666666555544455666666666666666655 56666666666666666665 233 345556666666


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      +|.|+.+..   +..++.|+.+++++|.++.+...  . ...+.+|+.+++.+|.+..+
T Consensus       149 ~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  149 GNLISDISG---LESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             cCcchhccC---CccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhcc
Confidence            666665543   33355666666666666655441  0 24555566666666655443

>KOG0532|consensus

Probab=98.83  E-value=9.7e-11  Score=115.45  Aligned_cols=170  Identities=19%  Similarity=0.223  Sum_probs=138.0

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      +.--...||+.|++..+|...+.+..|+.+.|+.|.|..++ .+.++..|+.|+|+.|+++.+|..+ ..|| |+.|.++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~s  151 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVS  151 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEe
Confidence            34456688999999999977777788999999999999987 7889999999999999999999988 5666 9999999


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh---hcccEEEEecCCCcc
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV---MFGTEIILSGDSIDA  173 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~---~~~~~l~lsgn~i~~  173 (435)
                      +|+++.++.  .++.+..|..|+.+.|.+..+|.    -+..+.+|+.|+++.|.+..+...   ..+..++++.|++..
T Consensus       152 NNkl~~lp~--~ig~~~tl~~ld~s~nei~slps----ql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~  225 (722)
T KOG0532|consen  152 NNKLTSLPE--EIGLLPTLAHLDVSKNEIQSLPS----QLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISY  225 (722)
T ss_pred             cCccccCCc--ccccchhHHHhhhhhhhhhhchH----HhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceee
Confidence            999999987  77888999999999999998887    367889999999999998776433   334889999999886


Q ss_pred             cccceeecCCccccccchhchhhhh
Q psy18204        174 GDQALFIMNHRTRLDWNFLWGCMFH  198 (435)
Q Consensus       174 ~~~~~~i~nh~~~lD~l~l~~~~~~  198 (435)
                      .+-.+.-+.|+   ..+-+..++.+
T Consensus       226 iPv~fr~m~~L---q~l~LenNPLq  247 (722)
T KOG0532|consen  226 LPVDFRKMRHL---QVLQLENNPLQ  247 (722)
T ss_pred             cchhhhhhhhh---eeeeeccCCCC
Confidence            66555545444   44445555543

>KOG2123|consensus

Probab=98.79  E-value=1.5e-10  Score=104.89  Aligned_cols=134  Identities=30%  Similarity=0.377  Sum_probs=95.3

Q ss_pred             CccccHHHHhcccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc
Q psy18204          1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA   80 (435)
Q Consensus         1 ~~~lt~~~i~~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~   80 (435)
                      |||||.+++..-+.-..+.+.+.|++-||.|..|.-.                       ..++.|+.|.||-|+|+.+.
T Consensus         1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic-----------------------~kMp~lEVLsLSvNkIssL~   57 (388)
T KOG2123|consen    1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDISIC-----------------------EKMPLLEVLSLSVNKISSLA   57 (388)
T ss_pred             CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHH-----------------------HhcccceeEEeeccccccch
Confidence            8999999988777666666777777777777655422                       33444555555555555542


Q ss_pred             chhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcc--ccccchHHHHhcCCccceeeecchhHHHHhhh
Q psy18204         81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI--NRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV  158 (435)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~--~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~  158 (435)
                      + + ..|++|++|+|..|.|.++..+.-+.++|+|++|-|..|+.+  .-++||..++..+|+|+.||=..+.-.++.+.
T Consensus        58 p-l-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A  135 (388)
T KOG2123|consen   58 P-L-QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA  135 (388)
T ss_pred             h-H-HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence            2 2 466777777777777777777667888999999999999965  55789999999999999999666655554443


Q ss_pred             h
Q psy18204        159 M  159 (435)
Q Consensus       159 ~  159 (435)
                      .
T Consensus       136 L  136 (388)
T KOG2123|consen  136 L  136 (388)
T ss_pred             H
Confidence            3

>KOG1859|consensus

Probab=98.79  E-value=2.2e-10  Score=115.76  Aligned_cols=150  Identities=23%  Similarity=0.284  Sum_probs=97.5

Q ss_pred             ccCCCCcceEEEecCCCcccccc----------ccc----------------------CCCCCCEEEccCCCCCCcC-CC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIEN----------MGA----------------------TLDQFDTIDFSNNDIRKID-GF   60 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~----------~~~----------------------~l~~L~~L~Ls~N~l~~l~-~l   60 (435)
                      ++..+.+|+.|.|+++.|...-+          +++                      -...|.+.++++|.++.++ ++
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL  183 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL  183 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH
Confidence            44556688888888888764211          110                      0123566677777777776 56


Q ss_pred             CCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCC
Q psy18204         61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP  140 (435)
Q Consensus        61 ~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~  140 (435)
                      .-++.|+.|+|++|+++.+. .+ ..|+.|++|||++|.+..++.+ .-.+|. |..|.+++|-++.+.+     +.++.
T Consensus       184 qll~ale~LnLshNk~~~v~-~L-r~l~~LkhLDlsyN~L~~vp~l-~~~gc~-L~~L~lrnN~l~tL~g-----ie~Lk  254 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD-NL-RRLPKLKHLDLSYNCLRHVPQL-SMVGCK-LQLLNLRNNALTTLRG-----IENLK  254 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH-HH-Hhcccccccccccchhcccccc-chhhhh-heeeeecccHHHhhhh-----HHhhh
Confidence            66777888888888888774 44 6778888888888888777764 334444 7788888887776544     46777


Q ss_pred             ccceeeecchhHHHH------hhhhcccEEEEecCCCc
Q psy18204        141 QVKLLDFSKVKLKAL------MNVMFGTEIILSGDSID  172 (435)
Q Consensus       141 ~L~~Ldl~~n~l~~l------~~~~~~~~l~lsgn~i~  172 (435)
                      +|+.||++.|-+...      .......++.+.||.+-
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            788888888776442      12223355556666543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.78  E-value=4.3e-09  Score=101.81  Aligned_cols=161  Identities=20%  Similarity=0.207  Sum_probs=112.7

Q ss_pred             ccccCCCCcceEEEecCCCccc-ccccccCC---CCCCEEEccCCCCCCcC------CCCCC-CCCCEEEccCCcccccc
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPV-IENMGATL---DQFDTIDFSNNDIRKID------GFPLL-KRLSCLFFNNNRIVRIA   80 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~-i~~~~~~l---~~L~~L~Ls~N~l~~l~------~l~~l-~~L~~L~ls~N~i~~i~   80 (435)
                      +..+.++++|+.|++++|.+.. .+..+..+   ++|+.|++++|.++...      .+..+ ++|+.|++++|.++.-.
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            3456668899999999999873 33322223   45999999999987421      35566 88999999999998311


Q ss_pred             ----chhhcCCCCCCeeecCCCcCCCCCC--C-CCCCCCCCCCEEEeecCCccccccc-hHHHHhcCCccceeeecchhH
Q psy18204         81 ----ENLQENLPNLETLILTGNNIQELGD--L-DPLSTLPKLKTLCLLHNPVINRPHY-RLYVAFKLPQVKLLDFSKVKL  152 (435)
Q Consensus        81 ----~~~~~~l~~L~~L~Ls~N~i~~l~~--~-~~l~~l~~L~~L~L~~N~i~~~~~~-~~~~~~~l~~L~~Ldl~~n~l  152 (435)
                          ...+..+++|++|++++|.+++...  + ..+..+++|+.|++++|.++..... ....+..+++|+.|++++|.+
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence                2234677899999999999874211  0 1344567999999999998744321 122456788999999999987


Q ss_pred             HH-----Hhhh-----hcccEEEEecCCCc
Q psy18204        153 KA-----LMNV-----MFGTEIILSGDSID  172 (435)
Q Consensus       153 ~~-----l~~~-----~~~~~l~lsgn~i~  172 (435)
                      +.     +...     .....+.++++.+.
T Consensus       234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         234 TDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             chHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            63     2222     34578889888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0531|consensus

Probab=98.76  E-value=1.4e-09  Score=109.29  Aligned_cols=151  Identities=30%  Similarity=0.334  Sum_probs=109.0

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      .+..+.++..|++.+|.|..+++.+..+.+|++|++++|.|+++.++..++.|+.|++++|.|+.+. ++ ..+++|+.+
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~-~~l~~L~~l  167 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GL-ESLKSLKLL  167 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CC-ccchhhhcc
Confidence            3566778888888888888888756668888888888888888888888888888888888888873 33 458888888


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhhc-----ccEEEEec
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMF-----GTEIILSG  168 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~~-----~~~l~lsg  168 (435)
                      ++++|++..+.... +..+.+|+.+.+.+|.+..+...     ..+..+..+++..|.++.+.....     ...+++.+
T Consensus       168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~-----~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL-----DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSG  241 (414)
T ss_pred             cCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch-----HHHHHHHHhhcccccceeccCcccchhHHHHHHhccc
Confidence            88888888776411 46778888888888888876653     334445555777777765433222     23555555


Q ss_pred             CCCc
Q psy18204        169 DSID  172 (435)
Q Consensus       169 n~i~  172 (435)
                      |.+.
T Consensus       242 n~i~  245 (414)
T KOG0531|consen  242 NRIS  245 (414)
T ss_pred             Cccc
Confidence            5554

>KOG3207|consensus

Probab=98.74  E-value=1.6e-09  Score=103.92  Aligned_cols=136  Identities=22%  Similarity=0.281  Sum_probs=97.6

Q ss_pred             CCCCcceEEEecCCCccccc---ccccCCCCCCEEEccCCCCCCcC-C--CCCCCCCCEEEccCCccc--cccchhhcCC
Q psy18204         16 TNPVKDRELDLRGYKIPVIE---NMGATLDQFDTIDFSNNDIRKID-G--FPLLKRLSCLFFNNNRIV--RIAENLQENL   87 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~---~~~~~l~~L~~L~Ls~N~l~~l~-~--l~~l~~L~~L~ls~N~i~--~i~~~~~~~l   87 (435)
                      ..|++++.|||+.|-+..+.   .....+++|+.|+||.|.+...- +  -..+++|+.|.|+.|.++  ++.. +...+
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~-~~~~f  221 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW-ILLTF  221 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH-HHHhC
Confidence            45788889999988877543   45567888999999999886542 1  246778888999988888  3422 33678


Q ss_pred             CCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        88 ~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      |+|+.|+|..|....... ....-++.|+.|+|++|++.+.+..  +.++.+|.|+.|+++.+.+..+
T Consensus       222 Psl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~--~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQG--YKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             CcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccccccc--cccccccchhhhhccccCcchh
Confidence            888888888885322222 2455577788888888888776643  2567888888888888888765

>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional

Probab=98.71  E-value=2e-07  Score=86.39  Aligned_cols=114  Identities=17%  Similarity=0.213  Sum_probs=81.7

Q ss_pred             hhcccEEEEecC-CCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccC
Q psy18204        158 VMFGTEIILSGD-SIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERN  236 (435)
Q Consensus       158 ~~~~~~l~lsgn-~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~  236 (435)
                      ...+.++.+.|. .++...+.++++||++.+|.+.+....       .....++.|+++.++|++||.++..++++++|+
T Consensus        47 ~~~g~~v~v~g~e~~p~~~~~IivaNH~S~lD~~~l~~~~-------~~~~~fvaK~el~~~P~~g~~~~~~g~i~VdR~  119 (245)
T PRK15018         47 PLFGLKVECRKPADAESYGNAIYIANHQNNYDMVTASNIV-------QPPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRN  119 (245)
T ss_pred             HHcCeEEEEEccCCCCCCCCEEEEECCCchHHHHHHHHHh-------CCCcEEEEeHHHhhCCHHHHHHHhCCCeEEeCC
Confidence            456678888774 355667899999999999987664321       123567899999999999999999999999996


Q ss_pred             -hHHhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcccc-HHHHhhhccc
Q psy18204        237 -WDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQ-KEISKKAKTF  287 (435)
Q Consensus       237 -~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~~-~~l~pr~~~~  287 (435)
                       ..++.+.+.+..+.+.+.         +.....+||||.-. ..+.|..+|+
T Consensus       120 ~~~~~~~~l~~~~~~l~~~---------g~sv~IFPEGTRs~~g~l~~Fk~Ga  163 (245)
T PRK15018        120 NRTKAHGTIAEVVNHFKKR---------RISIWMFPEGTRSRGRGLLPFKTGA  163 (245)
T ss_pred             CHHHHHHHHHHHHHHHHhC---------CCEEEEECCccCCCCCCCCCccHHH
Confidence             455566777776666432         12356779999633 3455555454

>KOG1859|consensus

Probab=98.70  E-value=2e-10  Score=115.99  Aligned_cols=127  Identities=18%  Similarity=0.207  Sum_probs=92.1

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN   99 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (435)
                      +|...+++.|.+..+...+.-++.|+.||||.|.+++.+++..|++|++|||++|.++.+|.---.+|. |..|+++||.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~  243 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA  243 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence            566677777877777766666777888888888888887777888888888888888877643223444 7888888888


Q ss_pred             CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhH
Q psy18204        100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL  152 (435)
Q Consensus       100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l  152 (435)
                      ++.+..   +.++++|+.||++.|-|......  ..++.+..|+.|.|.+|.+
T Consensus       244 l~tL~g---ie~LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  244 LTTLRG---IENLKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHhhhh---HHhhhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCcc
Confidence            877664   46677788888888877654332  2356677788888888876

>KOG3207|consensus

Probab=98.67  E-value=3.2e-09  Score=101.91  Aligned_cols=140  Identities=19%  Similarity=0.255  Sum_probs=108.6

Q ss_pred             cCCCCcceEEEecCCCccccc--ccccCCCCCCEEEccCCCCCCcC---CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204         15 YTNPVKDRELDLRGYKIPVIE--NMGATLDQFDTIDFSNNDIRKID---GFPLLKRLSCLFFNNNRIVRIAENLQENLPN   89 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~--~~~~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~   89 (435)
                      ...+++|+.|+|+.|.+...-  ..-..+++|+.|.|+.|.|+.-+   -+..+++|+.|+|..|..-.+...-+..+..
T Consensus       168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence            345789999999999987432  22336789999999999998543   3567899999999999633332323356788


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccch---HHHHhcCCccceeeecchhHHH
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYR---LYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~---~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      |++|+|++|++-+.+.......++.|+.|+++.+.++++..+.   ......+++|+.|+++.|++..
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            9999999999988876667888999999999999998664432   2234678999999999999863

>PLN03210 Resistant to P

Probab=98.63  E-value=1.5e-07  Score=106.26  Aligned_cols=123  Identities=21%  Similarity=0.245  Sum_probs=82.9

Q ss_pred             CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCc-cccccchhhcCCCCCCeeecC
Q psy18204         19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNR-IVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~-i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      .+|+.|.+.++.+..+|..+ .+.+|+.|++++|.+..++ ++..+++|+.|+|++|. ++.+|. + +.+++|++|+|+
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~  665 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLS  665 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEec
Confidence            35777777777777777655 3667777888777777765 56677777778777654 556643 3 567777777777


Q ss_pred             CC-cCCCCCCCCCCCCCCCCCEEEeecC-CccccccchHHHHhcCCccceeeecchh
Q psy18204         97 GN-NIQELGDLDPLSTLPKLKTLCLLHN-PVINRPHYRLYVAFKLPQVKLLDFSKVK  151 (435)
Q Consensus        97 ~N-~i~~l~~~~~l~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~l~~L~~Ldl~~n~  151 (435)
                      +| .+..++.  .+..+++|+.|++++| .+..+|..     ..+++|+.|++++|.
T Consensus       666 ~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~Lp~~-----i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        666 DCSSLVELPS--SIQYLNKLEDLDMSRCENLEILPTG-----INLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCccccch--hhhccCCCCEEeCCCCCCcCccCCc-----CCCCCCCEEeCCCCC
Confidence            76 3456654  6677777777777775 35566552     156677777777664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.62  E-value=1.4e-07  Score=106.38  Aligned_cols=126  Identities=19%  Similarity=0.307  Sum_probs=94.3

Q ss_pred             CCCcceEEEecCCCcccccccccCCCCCCEEEccCC-CCCCcCCCCCCCCCCEEEccCCc-cccccchhhcCCCCCCeee
Q psy18204         17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNN-DIRKIDGFPLLKRLSCLFFNNNR-IVRIAENLQENLPNLETLI   94 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~ls~N~-i~~i~~~~~~~l~~L~~L~   94 (435)
                      .+.+|++|+|++|.+..++.....+++|+.|+|++| .+..++.++.+++|+.|+|++|. +..+|..+ +.+++|+.|+
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~  687 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLD  687 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh-hccCCCCEEe
Confidence            567999999999999998877778999999999976 47788888899999999999864 66787766 7899999999


Q ss_pred             cCCC-cCCCCCCCCCCCCCCCCCEEEeecCCc-cccccchHHHHhcCCccceeeecchhHH
Q psy18204         95 LTGN-NIQELGDLDPLSTLPKLKTLCLLHNPV-INRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        95 Ls~N-~i~~l~~~~~l~~l~~L~~L~L~~N~i-~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +++| .++.++.  .+ ++++|+.|++++|.. ..+|.       ...+|+.|++++|.+.
T Consensus       688 L~~c~~L~~Lp~--~i-~l~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        688 MSRCENLEILPT--GI-NLKSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIE  738 (1153)
T ss_pred             CCCCCCcCccCC--cC-CCCCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCccc
Confidence            9986 5677664  22 567777777777642 23332       1344555555555543

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=9.3e-08  Score=100.76  Aligned_cols=105  Identities=22%  Similarity=0.307  Sum_probs=82.0

Q ss_pred             CCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccc-cccchhhcCCCCCCeeecCCCcCCC-CCCCCCCCCCCCCCEE
Q psy18204         43 QFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNIQE-LGDLDPLSTLPKLKTL  118 (435)
Q Consensus        43 ~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~-l~~~~~l~~l~~L~~L  118 (435)
                      .++.|+|++|.+++. + .+..+++|+.|+|++|.++ .+|+.+ +.+++|+.|+|++|+++. ++.  .+..+++|+.|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~--~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPE--SLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCch--HHhcCCCCCEE
Confidence            378899999999754 4 6888999999999999998 454444 899999999999999974 443  78889999999


Q ss_pred             EeecCCcc-ccccchHHHHhcCCccceeeecchhHH
Q psy18204        119 CLLHNPVI-NRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       119 ~L~~N~i~-~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +|++|.++ .+|..   +-....++..+++.+|...
T Consensus       496 ~Ls~N~l~g~iP~~---l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        496 NLNGNSLSGRVPAA---LGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             ECcCCcccccCChH---HhhccccCceEEecCCccc
Confidence            99999988 55552   1122356778888888653

>PTZ00261 acyltransferase; Provisional

Probab=98.49  E-value=3.9e-07  Score=87.06  Aligned_cols=174  Identities=16%  Similarity=0.181  Sum_probs=96.0

Q ss_pred             ccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChH------HhHHHHHHHH
Q psy18204        175 DQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD------SDQQAMTEQL  248 (435)
Q Consensus       175 ~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~------~d~~~~~~~~  248 (435)
                      ...++++||++.+|.+.+......   ....+.++++|.+|.++|++||.+...+.++++|+-.      .|++......
T Consensus       129 ~~~IivsNHqS~lDi~vl~~~~p~---r~~~~~~fVAKkELfkiP~fG~~l~~~G~IPVdR~~~~~g~~~vdrea~~~v~  205 (355)
T PTZ00261        129 HGCAYVGNHTSFWDVYAFIGLTPF---RHLLNTRTLMKSSLRKIPIFGGVFDRVGHFPVHFKSDSDGNFEVDKEKQAQVQ  205 (355)
T ss_pred             CCEEEEECCCchHHHHHHHHHccc---ccccccEEEEHHHHhhccHHHHHHHHCCCeeeecccccccccccchHHHHHHH
Confidence            467899999999998776544210   0123568899999999999999999999999987432      2333332222


Q ss_pred             HHhhcCCCchhhhHHHhhhhcCccCcccc-H-HHHhhhcccc-cCCccccccCCCCCCCCCEEEEEEeecCCCCCCCccc
Q psy18204        249 DYFHDIQHPVQEKQEAAALFKSKKGKELQ-K-EISKKAKTFV-PGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMD  325 (435)
Q Consensus       249 ~~l~~~~~~~~~~~~~~~~f~~~eG~~~~-~-~l~pr~~~~~-~~~~~~~l~~~~~~~~~~~vyD~Ti~Y~~~~~~~~~~  325 (435)
                      +...+      ...++..+..|||||.-. . .+.|..+|+. .  ++.        ..++.|+-+..+....-|..  .
T Consensus       206 ~~~~e------~Lk~G~sLvIFPEGTRS~~gg~L~pFK~GaF~L--Aie--------agvPIVPvai~Gs~~~wP~g--~  267 (355)
T PTZ00261        206 QAIDA------HLRLGGSLAFFPEGAINKHPQVLQTFRYGTFAT--IIK--------HRMEVYYMVSVGSEKTWPWW--M  267 (355)
T ss_pred             HHHHH------HHHCCCEEEEECCcCCcCCCCcCCCCcHHHHHH--HHH--------cCCCEEEEEEeChhhcCCCC--C
Confidence            21110      111233567789999743 2 4667666633 2  111        23343333322221111111  1


Q ss_pred             cccCCCCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy18204        326 AVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLN  371 (435)
Q Consensus       326 ~l~g~~p~~v~i~~~~~~i~~ip~~~~~~~~~wl~~~~~eKd~ll~  371 (435)
                      .+ ...|..|+|++-.+||+--. .+.+++.+=+++..++--+.++
T Consensus       268 ~l-~~~pg~I~V~iG~~PI~~~~-~~~~eL~~~lr~lmqe~~~~I~  311 (355)
T PTZ00261        268 MI-GGLPADMHIRIGAYPIDYDR-DSSKDVAVGLQQRMQKVRDEIA  311 (355)
T ss_pred             cc-CCCCceEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            12 22367788777556776222 2334554455555555443333

>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]

Probab=98.48  E-value=1.6e-06  Score=81.05  Aligned_cols=185  Identities=14%  Similarity=0.205  Sum_probs=116.8

Q ss_pred             hhhhcccEEEEecCC-CcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccc
Q psy18204        156 MNVMFGTEIILSGDS-IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIE  234 (435)
Q Consensus       156 ~~~~~~~~l~lsgn~-i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~  234 (435)
                      .-+..+..+.+.|.. +.....+++++||++.+|++.+.......     ....+++|.++.++|++||.+...++++++
T Consensus        44 ~~~~~~~r~~v~G~e~lp~~~~~ivvaNH~S~~D~~~l~~~~~~~-----~~~~f~~k~~l~~~p~~g~~~~~~~~i~v~  118 (255)
T COG0204          44 LLLLFGLRVEVEGLENLPKGGPALVVANHQSFLDPLLLSLALPRR-----GPVRFVAKKELFKVPLLGWLLRLLGAIPVD  118 (255)
T ss_pred             HHHHhCceEEEEeeecCCCCCCEEEEECchhhhhHHHHhhhcCCC-----cceEEEeehhhccCchHHHHHHHcCeeEec
Confidence            344566888888854 45568999999999999999986554221     168899999999999999999999999999


Q ss_pred             cChHHhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCccccH-H-HHhhhcccccCCccccccCCCCCCCCCEEEEEE
Q psy18204        235 RNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQK-E-ISKKAKTFVPGAALQDLSNIPTGNQLNAVYDIT  312 (435)
Q Consensus       235 R~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~~~-~-l~pr~~~~~~~~~~~~l~~~~~~~~~~~vyD~T  312 (435)
                      |+...+ ..+...++.+...         +.....+||||.... . +.+...|++.   +. ++   .  .+ -|+.+.
T Consensus       119 r~~~~~-~~~~~~~~~~~~~---------g~~l~iFPEGtr~~~~~~~~~~k~g~~~---~a-~~---~--~~-PivPv~  178 (255)
T COG0204         119 RENPDD-ETLRAAVARLKAG---------GRSLVIFPEGTRSRGGEELLPFKRGAAR---LA-LE---A--GV-PIVPVA  178 (255)
T ss_pred             CCCCcH-HHHHHHHHHHHhC---------CcEEEECCCcCcCCCccccCCCcchHHH---HH-HH---c--CC-CEEeEE
Confidence            998776 4445555544332         235677899997553 2 4444444432   10 01   0  11 277777


Q ss_pred             eecCCCCCCCccccccCCCCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy18204        313 VGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFY  374 (435)
Q Consensus       313 i~Y~~~~~~~~~~~l~g~~p~~v~i~~~~~~i~~ip~~~~~~~~~wl~~~~~eKd~ll~~~~  374 (435)
                      +.|.....+..         ....+.++..+.-++.....+..........+..++.+.+.+
T Consensus       179 i~g~~~~~~~~---------~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (255)
T COG0204         179 IVGAEELFPSL---------KKGKVKVRIGPPIDISALPEPLLPELAEAVEQLARPILLELL  231 (255)
T ss_pred             EeCCcccccCC---------CceeEEEEecCCcCccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence            77765422111         111144444444444333333455555666666666666665

>PLN03150 hypothetical protein; Provisional

Probab=98.48  E-value=2.6e-07  Score=97.43  Aligned_cols=101  Identities=18%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             CCCEEEccCCccccccchhhcCCCCCCeeecCCCcCC-CCCCCCCCCCCCCCCEEEeecCCcc-ccccchHHHHhcCCcc
Q psy18204         65 RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ-ELGDLDPLSTLPKLKTLCLLHNPVI-NRPHYRLYVAFKLPQV  142 (435)
Q Consensus        65 ~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~l~~~~~l~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~l~~L  142 (435)
                      .++.|+|++|.++...+..++.+++|+.|+|++|.+. .++.  .+..+++|+.|+|++|.++ .+|.    .+..+++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L  492 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP--SLGSITSLEVLDLSYNSFNGSIPE----SLGQLTSL  492 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh--HHhCCCCCCEEECCCCCCCCCCch----HHhcCCCC
Confidence            4788999999998543444489999999999999997 4554  6889999999999999998 5565    46889999


Q ss_pred             ceeeecchhHHHHhh-hh-----cccEEEEecCCC
Q psy18204        143 KLLDFSKVKLKALMN-VM-----FGTEIILSGDSI  171 (435)
Q Consensus       143 ~~Ldl~~n~l~~l~~-~~-----~~~~l~lsgn~i  171 (435)
                      +.|++++|.++.... ..     ....+.+.+|..
T Consensus       493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            999999998874322 11     224566666653

>KOG4579|consensus

Probab=98.44  E-value=1.1e-08  Score=83.51  Aligned_cols=108  Identities=24%  Similarity=0.255  Sum_probs=80.4

Q ss_pred             cceEEEecCCCcccccc---cccCCCCCCEEEccCCCCCCcC-CC-CCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         20 KDRELDLRGYKIPVIEN---MGATLDQFDTIDFSNNDIRKID-GF-PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~---~~~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      .+..++|++|.+-.++.   .......|..++|++|.+.+.+ .| ...+.+++|+|++|.|+++|+++ ..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcc
Confidence            44567888888776653   3444567777888888888876 44 34457888888888888888885 7888888888


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      ++.|.+...+.  .+..+.+|..|+..+|.+..++.
T Consensus       107 l~~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  107 LRFNPLNAEPR--VIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             cccCccccchH--HHHHHHhHHHhcCCCCccccCcH
Confidence            88888877765  45557788888888888777664

>KOG4579|consensus

Probab=98.42  E-value=1.3e-08  Score=83.04  Aligned_cols=106  Identities=22%  Similarity=0.350  Sum_probs=91.5

Q ss_pred             CCCEEEccCCCCCCcC----CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEE
Q psy18204         43 QFDTIDFSNNDIRKID----GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTL  118 (435)
Q Consensus        43 ~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L  118 (435)
                      .+..+|||+|+|-.+.    .+.....|+..+|++|.+..+|+.+....+.+++|+|++|.|+++|.  .+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhc
Confidence            4667899999887664    36677788999999999999999887778899999999999999997  69999999999


Q ss_pred             EeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204        119 CLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus       119 ~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      +++.|++...|.    ++..+.+|-.||...|.+..
T Consensus       106 Nl~~N~l~~~p~----vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  106 NLRFNPLNAEPR----VIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             ccccCccccchH----HHHHHHhHHHhcCCCCcccc
Confidence            999999998887    56678889999988887653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.33  E-value=5.2e-07  Score=59.71  Aligned_cols=39  Identities=44%  Similarity=0.631  Sum_probs=20.8

Q ss_pred             CCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCC
Q psy18204         65 RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG  104 (435)
Q Consensus        65 ~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~  104 (435)
                      +|++|++++|+|+.+++.+ +.|++|++|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence            4555556666665554433 55556666666666555544

...

>KOG1909|consensus

Probab=98.30  E-value=1.6e-07  Score=88.04  Aligned_cols=114  Identities=19%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             CCCCCCEEEccCCCCCC--cCC----CCCCCCCCEEEccCCccccccch-------------hhcCCCCCCeeecCCCcC
Q psy18204         40 TLDQFDTIDFSNNDIRK--IDG----FPLLKRLSCLFFNNNRIVRIAEN-------------LQENLPNLETLILTGNNI  100 (435)
Q Consensus        40 ~l~~L~~L~Ls~N~l~~--l~~----l~~l~~L~~L~ls~N~i~~i~~~-------------~~~~l~~L~~L~Ls~N~i  100 (435)
                      .+++|+.||||+|.|..  ++.    +.++..|+.|+|+||.+......             ....-+.|+.+...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            34466666666665532  221    34555666666666665532211             113345566666666666


Q ss_pred             CCCCCC---CCCCCCCCCCEEEeecCCcccccc-chHHHHhcCCccceeeecchhHH
Q psy18204        101 QELGDL---DPLSTLPKLKTLCLLHNPVINRPH-YRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       101 ~~l~~~---~~l~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      .+-+..   ..+..++.|+.+.++.|.|..... .-...+..|++|++||+++|-++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            544321   134445556666666665543222 11234455666666666666553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=8.4e-07  Score=58.71  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=19.2

Q ss_pred             CCCEEEccCCCCCCcCC-CCCCCCCCEEEccCCccccc
Q psy18204         43 QFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIVRI   79 (435)
Q Consensus        43 ~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~ls~N~i~~i   79 (435)
                      +|++|++++|+|+.++. +++|++|+.|++++|+|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555554 55555555555555555554

...

>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like

Probab=98.25  E-value=1.1e-05  Score=73.28  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             ccEEEEecCCCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHh
Q psy18204        161 GTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSD  240 (435)
Q Consensus       161 ~~~l~lsgn~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d  240 (435)
                      +..+.+.|.........++++||++.+|++.+...         ....++.|.++..+|++||.+...+.++++|+...+
T Consensus        10 ~~~~~v~g~~~~p~~~~iiv~NH~S~~D~~~l~~~---------~~~~fv~k~el~~~p~~g~~~~~~g~i~v~R~~~~~   80 (211)
T cd07991          10 FYVIKVHGKPDPPEAPRIIVANHTSFIDPLILFSD---------LFPSIVAKKELGKLPFIGTILRALGCIFVDRSEPKD   80 (211)
T ss_pred             EEEEEEECCCCCCCCCeEEEECCCcHHHHHHHhhh---------cCcEEEEehhhccCcHHHHHHHhCCceEEeCCCchh
Confidence            35677777554336678999999999999988654         245689999999999999999999999999986655


Q ss_pred             HHHHHHH-HHHhhcCCCchhhhHHHhhhhcCccCcccc-HHHHhhhcc
Q psy18204        241 QQAMTEQ-LDYFHDIQHPVQEKQEAAALFKSKKGKELQ-KEISKKAKT  286 (435)
Q Consensus       241 ~~~~~~~-~~~l~~~~~~~~~~~~~~~~f~~~eG~~~~-~~l~pr~~~  286 (435)
                      .....+. .+.+.+.        ++..+..+||||.-. ..+.|..+|
T Consensus        81 ~~~~~~~~~~~~~~~--------~g~~v~iFPEGtrs~~~~l~~Fk~g  120 (211)
T cd07991          81 RKKVVEEIKERATDP--------NWPPILIFPEGTTTNGKALIMFKKG  120 (211)
T ss_pred             HHHHHHHHHHHHhCC--------CCCeEEEecCccccCCCEEEeeccc
Confidence            4433333 3333321        122456789999532 234444433

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.

>KOG1644|consensus

Probab=98.25  E-value=1.1e-06  Score=76.56  Aligned_cols=102  Identities=29%  Similarity=0.460  Sum_probs=83.8

Q ss_pred             CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CC-CCCCCCCEEEccCCccccccc--hhhcCCCCCCeee
Q psy18204         19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GF-PLLKRLSCLFFNNNRIVRIAE--NLQENLPNLETLI   94 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~ls~N~i~~i~~--~~~~~l~~L~~L~   94 (435)
                      .+...+||++|.+..++++. .++.|.+|.|++|+|+.++ .+ .-+++|..|.|.+|+|.++.+  .+ ..||.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcccCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCccceee
Confidence            35678999999999887765 4899999999999999996 44 346789999999999997743  33 6899999999


Q ss_pred             cCCCcCCCCCCC--CCCCCCCCCCEEEeec
Q psy18204         95 LTGNNIQELGDL--DPLSTLPKLKTLCLLH  122 (435)
Q Consensus        95 Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~  122 (435)
                      +-+|.++.....  -.+..+|+|+.||...
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            999999876642  3567899999998654

>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase

Probab=98.07  E-value=1.9e-05  Score=71.90  Aligned_cols=97  Identities=22%  Similarity=0.362  Sum_probs=71.3

Q ss_pred             ccEEEEecC-CCcc-cccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChH
Q psy18204        161 GTEIILSGD-SIDA-GDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD  238 (435)
Q Consensus       161 ~~~l~lsgn-~i~~-~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~  238 (435)
                      ...+.+.|. +++. ..+.++++||++.+|+..++..        ....+++.|.++..+|++||.+...++++++|...
T Consensus        34 ~~~~~v~g~e~lp~~~~p~iiv~NH~S~~D~~~l~~~--------~~~~~~v~k~~l~~~P~~g~~~~~~~~i~v~R~~~  105 (214)
T PLN02901         34 FYKIEVEGLENLPSPDEPAVYVSNHQSFLDIYTLFHL--------GRPFKFISKTSIFLIPIIGWAMYMTGHIPLKRMDR  105 (214)
T ss_pred             ceeEEEECCccCCCCCCcEEEEECCCCchHHHHHhhc--------CCceEEEEEHHhhhccHHHHHHHHCCcEEEecCCc
Confidence            467778873 4543 5689999999999999776422        12467899999999999999999999999999765


Q ss_pred             HhH-HHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        239 SDQ-QAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       239 ~d~-~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                      ++. +.++...+.+++.          .....+|||+.
T Consensus       106 ~~~~~~~~~~~~~l~~g----------~~v~IfPEGtr  133 (214)
T PLN02901        106 RSQLECLKRCMELLKKG----------ASVFFFPEGTR  133 (214)
T ss_pred             HHHHHHHHHHHHHHhCC----------CEEEEeCCCCC
Confidence            443 3455555555432          24567799985

>KOG3665|consensus

Probab=98.02  E-value=1.8e-06  Score=91.23  Aligned_cols=134  Identities=20%  Similarity=0.289  Sum_probs=103.0

Q ss_pred             CcceEEEecCCCcc--ccc-ccccCCCCCCEEEccCCCCCCcC---CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         19 VKDRELDLRGYKIP--VIE-NMGATLDQFDTIDFSNNDIRKID---GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        19 ~~L~~L~L~~n~i~--~i~-~~~~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      .+|+.|+++|...-  ..+ .....+|.|++|.+++-.+..-+   -..++++|..||+|+.+++.+ .++ +.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHHH
Confidence            47889999886542  222 45667899999999998876543   357889999999999999988 667 89999999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccccc-ch--HHHHhcCCccceeeecchhHHH
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH-YR--LYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~-~~--~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      |.+.+=.+..-..+..+..+++|+.||+|...-...+. ..  ...-..+|.|+.||.|+..+..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            99999888776666678889999999999887654431 11  1122468999999999887753

>KOG4658|consensus

Probab=98.00  E-value=4.5e-06  Score=90.48  Aligned_cols=78  Identities=26%  Similarity=0.272  Sum_probs=36.6

Q ss_pred             cceEEEecCCC--ccccc-ccccCCCCCCEEEccCC-CCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         20 KDRELDLRGYK--IPVIE-NMGATLDQFDTIDFSNN-DIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        20 ~L~~L~L~~n~--i~~i~-~~~~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +|+.|-+.+|.  +..++ ..+..++.|.+||||+| .+..+| .++.+-+|++|+++...|+.+|.++ +++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhheec
Confidence            44444444443  33333 22334455555555543 234444 3444555555555555555554444 4455555555


Q ss_pred             cCCC
Q psy18204         95 LTGN   98 (435)
Q Consensus        95 Ls~N   98 (435)
                      +..+
T Consensus       625 l~~~  628 (889)
T KOG4658|consen  625 LEVT  628 (889)
T ss_pred             cccc
Confidence            5544

>KOG2982|consensus

Probab=97.96  E-value=2.3e-06  Score=78.86  Aligned_cols=40  Identities=25%  Similarity=0.223  Sum_probs=21.8

Q ss_pred             CCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204        112 LPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       112 l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      ++.+-.|+|+.|.|.+...  ...+..+++|+.|.++.|.+.
T Consensus       223 ~p~~~~LnL~~~~idswas--vD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWAS--VDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             CCcchhhhhcccccccHHH--HHHHcCCchhheeeccCCccc
Confidence            4444455666666554322  224456666666666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.94  E-value=2.6e-05  Score=64.62  Aligned_cols=120  Identities=22%  Similarity=0.312  Sum_probs=67.3

Q ss_pred             cccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN   89 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~   89 (435)
                      ..|.++.+|+.+.+.. .+..|+ ..+..+++|+.+.+.++ +..++  .|..+++|+.+.+.+ .+..++...|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3577778888888875 566676 55777778888888775 77775  577887888888865 777777778788888


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCcc
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQV  142 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L  142 (435)
                      |+.+.+..+ +..++. ..+.++ +|+.+.+.. .+..++..   .+..+++|
T Consensus        83 l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~-~~~~i~~~---~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS-NITKIEEN---AFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHT-TTTTT--T--EEE-TT-B-SS-------GGG-----
T ss_pred             ccccccCcc-ccEEch-hhhcCC-CceEEEECC-CccEECCc---cccccccC
Confidence            988888775 666665 367777 888888765 55555543   34556555

>KOG1909|consensus

Probab=97.93  E-value=3.9e-06  Score=78.94  Aligned_cols=156  Identities=18%  Similarity=0.185  Sum_probs=112.2

Q ss_pred             CCCcceEEEecCCCccccc--------------ccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCcc
Q psy18204         17 NPVKDRELDLRGYKIPVIE--------------NMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRI   76 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~--------------~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i   76 (435)
                      .+..|++|.|.+|.+....              ....+-++|+++...+|++..-+      .|...+.|+.+.++.|.|
T Consensus       118 s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I  197 (382)
T KOG1909|consen  118 SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGI  197 (382)
T ss_pred             hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccc
Confidence            3678899999999886421              23456678999999999987654      367778899999999998


Q ss_pred             cc--c--cchhhcCCCCCCeeecCCCcCCCCCCC---CCCCCCCCCCEEEeecCCccccccchH--HHHhcCCccceeee
Q psy18204         77 VR--I--AENLQENLPNLETLILTGNNIQELGDL---DPLSTLPKLKTLCLLHNPVINRPHYRL--YVAFKLPQVKLLDF  147 (435)
Q Consensus        77 ~~--i--~~~~~~~l~~L~~L~Ls~N~i~~l~~~---~~l~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~l~~L~~Ldl  147 (435)
                      ..  +  -...+..|++|+.|||..|-++.-...   +.+..+++|+.|+++++.+..-.....  ..-...|+|++|++
T Consensus       198 ~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l  277 (382)
T KOG1909|consen  198 RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLEL  277 (382)
T ss_pred             cCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceecc
Confidence            73  2  122347889999999999988764432   467778889999999998875433221  12245789999999


Q ss_pred             cchhHHHH---------hhhhcccEEEEecCCCc
Q psy18204        148 SKVKLKAL---------MNVMFGTEIILSGDSID  172 (435)
Q Consensus       148 ~~n~l~~l---------~~~~~~~~l~lsgn~i~  172 (435)
                      .+|.++.-         ....-..++.++||.+.
T Consensus       278 ~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  278 AGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             CcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            99988542         23333477888888874

>KOG4658|consensus

Probab=97.87  E-value=1.1e-05  Score=87.60  Aligned_cols=130  Identities=23%  Similarity=0.300  Sum_probs=102.6

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCC--CCCcCC--CCCCCCCCEEEccCC-ccccccchhhcCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNND--IRKIDG--FPLLKRLSCLFFNNN-RIVRIAENLQENLP   88 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~--l~~l~~--l~~l~~L~~L~ls~N-~i~~i~~~~~~~l~   88 (435)
                      +..+....+...+.+|.+..++.... ++.|++|-+.+|.  +..++.  |..++.|..|+|++| .+..+|..+ +.+-
T Consensus       518 ~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li  595 (889)
T KOG4658|consen  518 QVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELV  595 (889)
T ss_pred             cccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhh
Confidence            34455677888888888888876654 5589999999986  666663  788999999999966 467888888 8899


Q ss_pred             CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcc-ccccchHHHHhcCCccceeeecchh
Q psy18204         89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI-NRPHYRLYVAFKLPQVKLLDFSKVK  151 (435)
Q Consensus        89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~l~~L~~Ldl~~n~  151 (435)
                      +|++|+|+...|..+|.  .+.++++|.+|++..+.-. .++.    +...+++|++|.+-...
T Consensus       596 ~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhcccccCCCccccch--HHHHHHhhheeccccccccccccc----hhhhcccccEEEeeccc
Confidence            99999999999999987  8889999999999887643 3333    45668889988876654

>KOG2982|consensus

Probab=97.84  E-value=9.4e-06  Score=74.89  Aligned_cols=152  Identities=17%  Similarity=0.287  Sum_probs=82.3

Q ss_pred             CCcceEEEecCCCccccc---ccccCCCCCCEEEccCCCCCC-cCCC-CCCCCCCEEEccCCcccc-ccchhhcCCCCCC
Q psy18204         18 PVKDRELDLRGYKIPVIE---NMGATLDQFDTIDFSNNDIRK-IDGF-PLLKRLSCLFFNNNRIVR-IAENLQENLPNLE   91 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~---~~~~~l~~L~~L~Ls~N~l~~-l~~l-~~l~~L~~L~ls~N~i~~-i~~~~~~~l~~L~   91 (435)
                      ++.+++|||.+|.|+...   ..+..++.|++|+||.|.+.. +..+ ..+.+|++|-|++..+.- -.......+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            445677777777776443   445566777777777777653 2344 255667777777766651 1123336666777


Q ss_pred             eeecCCCcCCCCCC----CCC------------------------CCCCCCCCEEEeecCCccccccchHHHHhcCCccc
Q psy18204         92 TLILTGNNIQELGD----LDP------------------------LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVK  143 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~----~~~------------------------l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~  143 (435)
                      +|.+|.|++..+..    ...                        -..++++..+-+..||+.+....  .....+|.+.
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~  227 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE--KGSEPFPSLS  227 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc--ccCCCCCcch
Confidence            77777664322110    000                        11245555566666665433221  1224566667


Q ss_pred             eeeecchhHHHH------hhhhcccEEEEecCCC
Q psy18204        144 LLDFSKVKLKAL------MNVMFGTEIILSGDSI  171 (435)
Q Consensus       144 ~Ldl~~n~l~~l------~~~~~~~~l~lsgn~i  171 (435)
                      .|+|+.|.+..+      ........++++.+++
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            777777776443      2222335666666554

>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []

Probab=97.82  E-value=3.1e-06  Score=70.56  Aligned_cols=107  Identities=21%  Similarity=0.365  Sum_probs=61.9

Q ss_pred             CCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceecccc-ChHHhHHHHHHHH
Q psy18204        170 SIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIER-NWDSDQQAMTEQL  248 (435)
Q Consensus       170 ~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R-~~~~d~~~~~~~~  248 (435)
                      ++......++++||++.+|++.+........   .....++++.++.+.|++|+.+...+++++.| ...++...++...
T Consensus         9 ~l~~~~~~i~v~NH~s~~D~~~l~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~i~i~r~~~~~~~~~~~~~~   85 (132)
T PF01553_consen    9 NLPKGGGVIFVSNHQSWLDGFALMALLQRSG---PRRPRFVAKDELFKIPFLGWFLRRLGFIPIDRSNRKKNRKALKDIK   85 (132)
T ss_dssp             HHHTT-EEEEEE----TTHHHHHHHHHTTT----HHH-EEEEECHHHH-TTTHHHHHEEEEE--CCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEecCCCCCcchheeehhhhhc---cccceeEeeeccccchhhhhhhhhccceeeeeecccccchhHHHHH
Confidence            3445688899999999999999887763322   25788999999999999999999999999999 4444555555555


Q ss_pred             HHhhcCCCchhhhHHHhhhhcCccCccccH-HHHhhhccccc
Q psy18204        249 DYFHDIQHPVQEKQEAAALFKSKKGKELQK-EISKKAKTFVP  289 (435)
Q Consensus       249 ~~l~~~~~~~~~~~~~~~~f~~~eG~~~~~-~l~pr~~~~~~  289 (435)
                      +.+.+          +..+..+|||+.... .+.|..+|+..
T Consensus        86 ~~l~~----------~~~i~ifPEG~~~~~~~~~~~~~G~~~  117 (132)
T PF01553_consen   86 EILRK----------GGSIVIFPEGTRSRSGELLPFKKGAFH  117 (132)
T ss_dssp             HHHHC-------------EEE-TT-S---B--B----HHHHH
T ss_pred             HHhhh----------cceeeecCCccCcCCCccCCccHHHHH
Confidence            54433          223677899986443 44666666543

This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.72  E-value=9.6e-05  Score=72.64  Aligned_cols=74  Identities=18%  Similarity=0.344  Sum_probs=51.7

Q ss_pred             CCCcceEEEecCCCcccccccccCCCCCCEEEccC-CCCCCcCC-CCCCCCCCEEEccCC-ccccccchhhcCCCCCCee
Q psy18204         17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSN-NDIRKIDG-FPLLKRLSCLFFNNN-RIVRIAENLQENLPNLETL   93 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~-N~l~~l~~-l~~l~~L~~L~ls~N-~i~~i~~~~~~~l~~L~~L   93 (435)
                      .+.+++.|++++|.|+.+|..   ..+|+.|.+++ +.++.+++ ++  ++|+.|.+++| .+..+|+       +|+.|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-------sLe~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-------SVRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-------ccceE
Confidence            356788999999999988832   34799999987 46666663 32  57899999988 6665543       35666


Q ss_pred             ecCCCcCCC
Q psy18204         94 ILTGNNIQE  102 (435)
Q Consensus        94 ~Ls~N~i~~  102 (435)
                      +++.|....
T Consensus       118 ~L~~n~~~~  126 (426)
T PRK15386        118 EIKGSATDS  126 (426)
T ss_pred             EeCCCCCcc
Confidence            666655433

>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168

Probab=97.67  E-value=3.2e-05  Score=67.17  Aligned_cols=89  Identities=15%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             cccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHhHHHHHHHHHHhhc
Q psy18204        174 GDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHD  253 (435)
Q Consensus       174 ~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d~~~~~~~~~~l~~  253 (435)
                      ....++++||++.+|++.+......    ......+++|.++...|+ ||.+...++++++|+..  ++.+....+.+++
T Consensus        20 ~~~~iiv~NH~S~~D~~~l~~~~~~----~~~~~~~vak~~l~~~p~-g~~~~~~g~i~V~r~~~--~~~~~~~~~~l~~   92 (163)
T cd07988          20 PKFVVIGAPHTSNWDFVLGLLAAFA----LGLKISFLGKHSLFKPPL-GPFMRWLGGIPVDRSRA--GGLVEQVVEEFRR   92 (163)
T ss_pred             CceEEEEECCCccHHHHHHHHHHHh----cCCceEEEEEHHhhhCcH-HHHHHHcCCEEeEcCCc--ccHHHHHHHHHHh
Confidence            4578899999999999887544221    123577899999999999 99999999999999753  2234444443332


Q ss_pred             CCCchhhhHHHhhhhcCccCcccc
Q psy18204        254 IQHPVQEKQEAAALFKSKKGKELQ  277 (435)
Q Consensus       254 ~~~~~~~~~~~~~~f~~~eG~~~~  277 (435)
                      .        ++..+..+||||.-.
T Consensus        93 g--------~~~~l~IFPEGtR~~  108 (163)
T cd07988          93 R--------EEFVLAIAPEGTRSK  108 (163)
T ss_pred             C--------CCcEEEEeCCCCCCC
Confidence            1        112356789999543

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.

>KOG3665|consensus

Probab=97.61  E-value=3.8e-05  Score=81.36  Aligned_cols=109  Identities=21%  Similarity=0.253  Sum_probs=89.1

Q ss_pred             CCCcceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc--chhhcCCCCCCe
Q psy18204         17 NPVKDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA--ENLQENLPNLET   92 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~--~~~~~~l~~L~~   92 (435)
                      -+|.|+.|.+.+-.+.  .+.....++++|..||+|+.+++.+.+++.+++|+.|.+.+=.+..-.  ..+| +|++|+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~v  224 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRV  224 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCe
Confidence            4789999999998775  445677889999999999999999999999999999999888877532  3564 7999999


Q ss_pred             eecCCCcCCCCCC-----CCCCCCCCCCCEEEeecCCcc
Q psy18204         93 LILTGNNIQELGD-----LDPLSTLPKLKTLCLLHNPVI  126 (435)
Q Consensus        93 L~Ls~N~i~~l~~-----~~~l~~l~~L~~L~L~~N~i~  126 (435)
                      ||+|..+......     ++.-..+|+|+.||.|++.++
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9999987765442     223445999999999988765

>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases

Probab=97.51  E-value=0.00011  Score=60.93  Aligned_cols=98  Identities=15%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             cEEEEecCC-CcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHh
Q psy18204        162 TEIILSGDS-IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSD  240 (435)
Q Consensus       162 ~~l~lsgn~-i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d  240 (435)
                      ..+.+.|.. ++.....++++||.+.+|++.++...       .....++.+..+.+.|++||.+...+.+++.|+..++
T Consensus         2 ~~~~v~g~~~lp~~~~~i~v~nH~s~~D~~~~~~~~-------~~~~~~~~~~~~~~~p~~~~~~~~~g~~~i~r~~~~~   74 (130)
T TIGR00530         2 LKVEVVGPENLPAKSPVLVVANHQSNLDPLTLSAAF-------PPPIVFIAKKELKWIPFFGIMLWLTGAIFIDRENIRA   74 (130)
T ss_pred             cEEEEECcccCCCCCCEEEEECCCchhHHHHHHHHc-------CCCcEEEEhHHhhhCCHHHHHHHHcCCEEecCCChHH
Confidence            355666643 44577899999999999998875542       1346778888999999999999999999999987666


Q ss_pred             HHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        241 QQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                      .....+.+.+....         +.....+|||+.
T Consensus        75 ~~~~~~~~~~~l~~---------g~~v~ifPeG~~  100 (130)
T TIGR00530        75 IATALKAAIEVLKQ---------GRSIGVFPEGTR  100 (130)
T ss_pred             HHHHHHHHHHHHhC---------CCEEEEeCCCCC
Confidence            55544444332221         123456788874

1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.41  E-value=0.00064  Score=77.43  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             cEEEEecCC-Ccc-cccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHH
Q psy18204        162 TEIILSGDS-IDA-GDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDS  239 (435)
Q Consensus       162 ~~l~lsgn~-i~~-~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~  239 (435)
                      ..+.+.|.. ++. ....++++||++.+|.+.+....       ..+..+++|.++.+.|++||.++..+.++++|...+
T Consensus       439 ~~~~~~g~~~~~~~~~~~i~~~nH~s~~D~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~  511 (1140)
T PRK06814        439 YRVEVKGLENLQKAGKKAVIAANHVSFLDGPLLAAYL-------PEEPTFAIDTDIAKAWWVKPFLKLAKALPVDPTNPM  511 (1140)
T ss_pred             EEEEEeCCccccccCCCEEEEECCcchHHHHHHHHhC-------CCCeEEEEeHHHhhhhHHHHHHHhcCeeecCCCChH
Confidence            456677744 333 34589999999999999986542       234788999999999999999999999999997543


Q ss_pred             hHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCccc-cHHHHhhhcccc
Q psy18204        240 DQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKEL-QKEISKKAKTFV  288 (435)
Q Consensus       240 d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~-~~~l~pr~~~~~  288 (435)
                         .+++..+.+++          +.....|||||.- ...+.|..+|+.
T Consensus       512 ---~~~~~~~~l~~----------g~~~~ifPeGtr~~~~~~~~f~~g~~  548 (1140)
T PRK06814        512 ---ATRTLIKEVQK----------GEKLVIFPEGRITVTGSLMKIYDGPG  548 (1140)
T ss_pred             ---HHHHHHHHHHC----------CCEEEEeCCCCCCCCCCccccchHHH
Confidence               34444444432          2356778999963 345666666653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.39  E-value=0.0002  Score=65.57  Aligned_cols=115  Identities=20%  Similarity=0.224  Sum_probs=76.2

Q ss_pred             CCCCCCEEEccCCCCCCc-C-----CCCCCCCCCEEEccCCccccccch-----hh--------cCCCCCCeeecCCCcC
Q psy18204         40 TLDQFDTIDFSNNDIRKI-D-----GFPLLKRLSCLFFNNNRIVRIAEN-----LQ--------ENLPNLETLILTGNNI  100 (435)
Q Consensus        40 ~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~ls~N~i~~i~~~-----~~--------~~l~~L~~L~Ls~N~i  100 (435)
                      .|++|+.++||+|.+..- +     -++.-+.|.+|.|+||.+..+...     +|        .+-|.|++.....|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            577888888888877532 1     256677788888888887654321     11        3456788888888888


Q ss_pred             CCCCCC---CCCCCCCCCCEEEeecCCcccc--ccchHHHHhcCCccceeeecchhHHH
Q psy18204        101 QELGDL---DPLSTLPKLKTLCLLHNPVINR--PHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus       101 ~~l~~~---~~l~~l~~L~~L~L~~N~i~~~--~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      ..-+..   ..+..-.+|+.+.+..|.|...  ....++.+..+.+|++||+++|-++.
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            654431   1233345778888888887633  33334456678888888888888763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.39  E-value=0.00014  Score=66.46  Aligned_cols=148  Identities=17%  Similarity=0.163  Sum_probs=110.2

Q ss_pred             HHHHhcccccCCCCcceEEEecCCCcc-ccc----ccccCCCCCCEEEccCCCCCCcCC---------------CCCCCC
Q psy18204          6 ADLIVQCMQYTNPVKDRELDLRGYKIP-VIE----NMGATLDQFDTIDFSNNDIRKIDG---------------FPLLKR   65 (435)
Q Consensus         6 ~~~i~~~~~~~~~~~L~~L~L~~n~i~-~i~----~~~~~l~~L~~L~Ls~N~l~~l~~---------------l~~l~~   65 (435)
                      ..+....+.+..|++|+..+||+|.+. ..|    ..++.-+.|.+|.+++|.+..+.+               ..+-|.
T Consensus        79 ~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~  158 (388)
T COG5238          79 SNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPK  158 (388)
T ss_pred             HHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCC
Confidence            344555566778999999999999987 333    567778899999999999876531               346688


Q ss_pred             CCEEEccCCccccccch----hhcCCCCCCeeecCCCcCCCCCC--C--CCCCCCCCCCEEEeecCCccccccc-hHHHH
Q psy18204         66 LSCLFFNNNRIVRIAEN----LQENLPNLETLILTGNNIQELGD--L--DPLSTLPKLKTLCLLHNPVINRPHY-RLYVA  136 (435)
Q Consensus        66 L~~L~ls~N~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~l~~--~--~~l~~l~~L~~L~L~~N~i~~~~~~-~~~~~  136 (435)
                      |++.....|++..-+..    .+..-.+|+++-+..|.|..-+-  +  ..+..+.+|+.|+|.+|-++..... -...+
T Consensus       159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al  238 (388)
T COG5238         159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL  238 (388)
T ss_pred             ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence            99999999999865532    23444789999999999965421  1  1345688999999999999864332 12234


Q ss_pred             hcCCccceeeecchhHH
Q psy18204        137 FKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       137 ~~l~~L~~Ldl~~n~l~  153 (435)
                      ...+.|+.|.+.+|-++
T Consensus       239 ~~W~~lrEL~lnDClls  255 (388)
T COG5238         239 CEWNLLRELRLNDCLLS  255 (388)
T ss_pred             cccchhhhccccchhhc
Confidence            56677899999998876

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.37  E-value=0.00038  Score=57.52  Aligned_cols=105  Identities=24%  Similarity=0.379  Sum_probs=64.3

Q ss_pred             ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCC
Q psy18204         36 NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLP  113 (435)
Q Consensus        36 ~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~  113 (435)
                      ..+..+++|+.+.+.. .+..++  .|..+++|+.+.+.++ +..++...|.++++|+.+.+.+ .+..++. ..+..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccccccc
Confidence            4566778899999875 577775  5888888999998775 8888888888888899999976 5666665 3777888


Q ss_pred             CCCEEEeecCCccccccchHHHHhcCCccceeeecc
Q psy18204        114 KLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK  149 (435)
Q Consensus       114 ~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~  149 (435)
                      +|+.+.+..+ +..++..   .+..+ +|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~---~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSS---SFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTT---TTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchh---hhcCC-CceEEEECC
Confidence            9999998776 6655554   34555 777776654

>PLN02833 glycerol acyltransferase family protein

Probab=97.32  E-value=0.0017  Score=63.80  Aligned_cols=109  Identities=14%  Similarity=0.182  Sum_probs=71.4

Q ss_pred             cEEEEecCCCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccc-hhhhhhceeccccChHHh
Q psy18204        162 TEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPG-WVMQIAGFLYIERNWDSD  240 (435)
Q Consensus       162 ~~l~lsgn~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G-~~~~~~~~ifl~R~~~~d  240 (435)
                      ..+.+.|.........++++||++.+|.+.+....         ...+++|+...++|++| |.+...++++++|+-.++
T Consensus       150 ~~i~v~G~e~~~~~~~IiVaNH~S~lDi~vL~s~~---------p~~~v~kk~~~~~~~~~~~~~~~~g~I~VdR~~~~~  220 (376)
T PLN02833        150 GVIKYHGPRPSRRPKQVFVANHTSMIDFIVLEQMT---------PFAVIMQKHPGWVGFLQNTILESVGCIWFNRTEAKD  220 (376)
T ss_pred             EEEEEECCcCCCCCCEEEEECCCChHHHHHHHhhc---------CceEEEEehhhhhHHHHHHHHHHcCcEEecCCCHHH
Confidence            34566775544455689999999999998875431         12356677788887766 889999999999975556


Q ss_pred             HHHHHHHHH-HhhcCCCchhhhHHHhhhhcCccCcccc-HHHHhhhccc
Q psy18204        241 QQAMTEQLD-YFHDIQHPVQEKQEAAALFKSKKGKELQ-KEISKKAKTF  287 (435)
Q Consensus       241 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~f~~~eG~~~~-~~l~pr~~~~  287 (435)
                      ...+.+.+. ++.+.        .+..+..|||||... ..+.|..+|.
T Consensus       221 ~~~~~~~l~~~l~~~--------~G~~llIFPEGTrs~~~~l~~FK~Ga  261 (376)
T PLN02833        221 REVVAKKLRDHVQDP--------DRNPLLIFPEGTCVNNEYTVMFKKGA  261 (376)
T ss_pred             HHHHHHHHHHHHHhc--------CCCEEEEEcCccccCCCcccccchhh
Confidence            555444443 33210        122466779999643 3455555553

>KOG2120|consensus

Probab=97.29  E-value=9.4e-06  Score=74.93  Aligned_cols=130  Identities=15%  Similarity=0.096  Sum_probs=90.0

Q ss_pred             cceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCC-ccccccc-hhhcCCCCCCee
Q psy18204         20 KDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNN-RIVRIAE-NLQENLPNLETL   93 (435)
Q Consensus        20 ~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N-~i~~i~~-~~~~~l~~L~~L   93 (435)
                      .|+.|||+...|+  .+..++..+.+|+.|.|.++++.+--  .++.-.+|+.|+++.+ .++.-.. -++.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5888999988887  45577778889999999999887642  5777788999999885 4664332 346888999999


Q ss_pred             ecCCCcCCC-CCCCCCCCC-CCCCCEEEeecCCcc-ccccchHHHHhcCCccceeeecchh
Q psy18204         94 ILTGNNIQE-LGDLDPLST-LPKLKTLCLLHNPVI-NRPHYRLYVAFKLPQVKLLDFSKVK  151 (435)
Q Consensus        94 ~Ls~N~i~~-l~~~~~l~~-l~~L~~L~L~~N~i~-~~~~~~~~~~~~l~~L~~Ldl~~n~  151 (435)
                      +|+.+.+.. .-.. ...+ -++|+.|+|+|..-. .+.+. ......+|+|..||||+|-
T Consensus       266 NlsWc~l~~~~Vtv-~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTV-AVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhH-HHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeecccccc
Confidence            999887643 2111 2222 346888888876522 11111 1245788999999998874

>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like

Probab=97.26  E-value=0.00011  Score=66.55  Aligned_cols=127  Identities=13%  Similarity=0.188  Sum_probs=74.7

Q ss_pred             ccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHhH---HHHHHHHHHh
Q psy18204        175 DQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQ---QAMTEQLDYF  251 (435)
Q Consensus       175 ~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d~---~~~~~~~~~l  251 (435)
                      ...++++||++.+|.+.+........    ....++++.+....|++||.+...+.+|++|....+.   +.+.+.+...
T Consensus        22 ~~~i~v~NH~S~lD~~~l~~~~~~~~----~~~~~va~~e~~~~~~~g~~l~~~g~i~I~R~~~~~~~~~~~~~~~~~~~   97 (205)
T cd07993          22 HPVVLLPTHRSYLDFLLLSFILFSLG----LPLPHIAAGENLNIPILGTLLRRLGAFFIRRSFGKDPLYRAVLQEYVQEL   97 (205)
T ss_pred             CCEEEEecCcchhHHHHHHHHHHHCC----CCCcEEEEchhhCcHHHHHHHHHCCCEEEecCCCccHHHHHHHHHHHHHH
Confidence            56789999999999988865543211    1245666777777889999999999999999854332   2333333322


Q ss_pred             hcCCCchhhhHHHhhhhcCccCcccc-HHHHhhhcc-cccCCccccccCCCCCCCCCEEEEEEeecCCC
Q psy18204        252 HDIQHPVQEKQEAAALFKSKKGKELQ-KEISKKAKT-FVPGAALQDLSNIPTGNQLNAVYDITVGYLGT  318 (435)
Q Consensus       252 ~~~~~~~~~~~~~~~~f~~~eG~~~~-~~l~pr~~~-~~~~~~~~~l~~~~~~~~~~~vyD~Ti~Y~~~  318 (435)
                      .+         ++.....+||||.-. ..+.|...| |..  ....... ..... -.|+=|+|.|+..
T Consensus        98 l~---------~g~~l~iFPEGtrs~~g~~~~~k~G~~~~--a~~~~~~-~~~~~-v~IvPV~i~Y~~~  153 (205)
T cd07993          98 LK---------NGQPLEFFIEGTRSRTGKLLPPKLGLLSV--VVEAYLK-GSVPD-VLIVPVSISYDRV  153 (205)
T ss_pred             Hh---------CCceEEEEcCCCCCCCCCccchHHHHHHH--HHHHHhh-CCCCC-eEEEEeEEeeCcc
Confidence            21         223466789999632 233333333 322  1111000 00011 2477788888764

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.

>PLN02783 diacylglycerol O-acyltransferase

Probab=97.24  E-value=0.0014  Score=63.13  Aligned_cols=77  Identities=10%  Similarity=0.099  Sum_probs=57.6

Q ss_pred             hcccEEEEec-CCCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccC
Q psy18204        159 MFGTEIILSG-DSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERN  236 (435)
Q Consensus       159 ~~~~~l~lsg-n~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~  236 (435)
                      .++..+.+.| .+++.....++.+||++.+|............. .....+.++|+++.++|++||.+..+|.+.++|+
T Consensus        84 ~~~~~v~v~g~e~l~~~~~~I~~~nH~S~ldi~~~~~~~~~~~~-p~~~~~~lak~~lf~iP~~g~~~~~~G~ipv~R~  161 (315)
T PLN02783         84 YFPVRLHVEDEEAFDPNRAYVFGYEPHSVLPIGVIALADLSGFL-PLPKIRALASSAVFYTPFLRHIWTWLGLDPASRK  161 (315)
T ss_pred             hcCeEEEEEchhhCCCCCCEEEEECCCcchhhHHHhhhhhhhcc-CCCchHHHhhhhhccCcHHHHHHHHcCCeEEcHH
Confidence            5667888888 456778889999999999997653221111101 1135677899999999999999999999999985

>KOG2120|consensus

Probab=97.20  E-value=1.4e-05  Score=73.80  Aligned_cols=133  Identities=18%  Similarity=0.170  Sum_probs=95.6

Q ss_pred             cCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCC-CCCCcC---CCCCCCCCCEEEccCCcccc--ccchhhcCC
Q psy18204         15 YTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNN-DIRKID---GFPLLKRLSCLFFNNNRIVR--IAENLQENL   87 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N-~l~~l~---~l~~l~~L~~L~ls~N~i~~--i~~~~~~~l   87 (435)
                      +..|.+|+.|.+.++.+. .|-+.++.-.+|+.|+||.+ .++...   -+.+++.|..|+++.+.++.  +..-+..--
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            345678899999999987 56677777889999999985 566554   26889999999999998873  211222334


Q ss_pred             CCCCeeecCCCcC----CCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchh
Q psy18204         88 PNLETLILTGNNI----QELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVK  151 (435)
Q Consensus        88 ~~L~~L~Ls~N~i----~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~  151 (435)
                      ++|+.|+|++.+-    +.+..  ....|++|.+|+|++|..-.-  .-...+.+++.|++|.+++|-
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhc
Confidence            6788899998742    22221  235699999999999863321  223456789999999998875

>KOG2739|consensus

Probab=97.15  E-value=0.00021  Score=65.05  Aligned_cols=102  Identities=24%  Similarity=0.281  Sum_probs=75.0

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCC---cC-CCCCCCCCCEEEccCCcccccc--chhhcCCCCCC
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK---ID-GFPLLKRLSCLFFNNNRIVRIA--ENLQENLPNLE   91 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~---l~-~l~~l~~L~~L~ls~N~i~~i~--~~~~~~l~~L~   91 (435)
                      +..|+.|.+.+..++++.+.. .+++|+.|.+|.|.+..   ++ -...+++|++|++++|+|..+.  ..+ ..+++|.
T Consensus        42 ~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchh
Confidence            446677778888888776665 48899999999995443   33 2355699999999999998642  223 6788999


Q ss_pred             eeecCCCcCCCCCCC--CCCCCCCCCCEEEee
Q psy18204         92 TLILTGNNIQELGDL--DPLSTLPKLKTLCLL  121 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~  121 (435)
                      .|++.+|..+.+.+.  ..+.-+++|++|+-.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            999999988876652  245567888887643

>PRK03355 glycerol-3-phosphate acyltransferase; Validated

Probab=97.06  E-value=0.0006  Score=72.49  Aligned_cols=91  Identities=18%  Similarity=0.217  Sum_probs=63.2

Q ss_pred             cccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHhH---HHHHHHH
Q psy18204        172 DAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQ---QAMTEQL  248 (435)
Q Consensus       172 ~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d~---~~~~~~~  248 (435)
                      ....+.++++||++++|.+.+....+..+   +....++.+..+ .+|++||.+...|.+|++|+...|.   ..+++..
T Consensus       264 ~~~~~vV~vpNHrS~lD~lll~~~l~~~g---l~~~~i~Ag~~L-~~~~lG~llr~~Ga~fIrR~~~~~~ly~~vl~eyi  339 (783)
T PRK03355        264 LEEHPAVLLFSHRSYIDGLVVPVAMQENR---LPPVHVFGGINL-SFGPMGPIMRRSGMIFIRRNIGDDPLYKYVLREYV  339 (783)
T ss_pred             cCCCCEEEEECCCcchHHHHHHHHHhhcC---CCCcEEEeHHHh-ccHHHHHHHHHcCcEEecCCCCchHHHHHHHHHHH
Confidence            35668899999999999998866654322   234456777787 4788999999999999999865443   2444445


Q ss_pred             HHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        249 DYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       249 ~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                      +.+...+.         ....|+|||.
T Consensus       340 ~~Ll~~G~---------~v~iFpEGTR  357 (783)
T PRK03355        340 GYLVEKRF---------NLSWYIEGTR  357 (783)
T ss_pred             HHHHhCCC---------eEEEEecCCC
Confidence            55433222         2344689996

>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like

Probab=97.02  E-value=0.00062  Score=61.44  Aligned_cols=96  Identities=17%  Similarity=0.274  Sum_probs=68.1

Q ss_pred             EEEEec-CCCcccccceeecCCc-cccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHh
Q psy18204        163 EIILSG-DSIDAGDQALFIMNHR-TRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSD  240 (435)
Q Consensus       163 ~l~lsg-n~i~~~~~~~~i~nh~-~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d  240 (435)
                      .+.+.| +++....+.++++||+ +.+|.+.+....       ....+++++.++...|++||.+..++.+++.|+....
T Consensus        15 ~v~v~G~e~lp~~~~~I~v~NH~~s~~D~~~l~~~~-------~~~~~~v~~~~~~~~p~~~~~~~~~g~ipI~r~~~~~   87 (203)
T cd07992          15 RITVVGRENVPKDGPVIFLGNHPNALIDPLLLAATL-------RRPVRFLAKADLFKNPLIGWLLESFGAIPVYRPKDLA   87 (203)
T ss_pred             eeEEECCccCCCCCCEEEEeCCccchhhHHHHHHhc-------CCCcEEEEEhhhccchHHHHHHHHcCceEeEcCCCcc
Confidence            456677 4455667899999999 578877764431       2357788899999999999999999999999976432


Q ss_pred             ---------HHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        241 ---------QQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       241 ---------~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                               ...+....+.+++          +.....+|||+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~----------G~~l~IFPEGtr  121 (203)
T cd07992          88 RGGIGKISNAAVFDAVGEALKA----------GGAIGIFPEGGS  121 (203)
T ss_pred             cccccchhHHHHHHHHHHHHhC----------CCEEEEeCCCCC
Confidence                     3334444444432          234667899995

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.

>smart00563 PlsC Phosphate acyltransferases

Probab=96.98  E-value=0.00053  Score=55.50  Aligned_cols=85  Identities=25%  Similarity=0.406  Sum_probs=64.8

Q ss_pred             ceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChH-HhHHHHHHHHHHhhcCC
Q psy18204        177 ALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD-SDQQAMTEQLDYFHDIQ  255 (435)
Q Consensus       177 ~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~-~d~~~~~~~~~~l~~~~  255 (435)
                      ++.++||.+.+|+++++......    ..+..++++..+...|++++.+...+++++.|... .+.+.+++..+.+++  
T Consensus         1 ~i~v~NH~s~~D~~~l~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~l~~--   74 (118)
T smart00563        1 ALVVANHQSFLDPLVLSALLPRK----GGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRENGRLARAALREAVRLLRD--   74 (118)
T ss_pred             CEEEECCCchHHHHHHHHHcccc----cCceEEEeHHHHhhccHHHHHHHHCCCeEEeCCCcHHHHHHHHHHHHHHhC--
Confidence            36789999999999998774321    14577888999999999999999999999999876 666666666654432  


Q ss_pred             CchhhhHHHhhhhcCccCcc
Q psy18204        256 HPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       256 ~~~~~~~~~~~~f~~~eG~~  275 (435)
                              +.....+|||+.
T Consensus        75 --------~~~~~ifPeG~~   86 (118)
T smart00563       75 --------GGWLLIFPEGTR   86 (118)
T ss_pred             --------CCEEEEeCCccc
Confidence                    234567799984

Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.

>KOG2123|consensus

Probab=96.90  E-value=5e-05  Score=69.59  Aligned_cols=84  Identities=27%  Similarity=0.288  Sum_probs=72.2

Q ss_pred             CCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCc
Q psy18204         62 LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ  141 (435)
Q Consensus        62 ~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~  141 (435)
                      .+.+.+.|++-++.|+.|.  +...|+.|+.|.||-|.|+.+.   .+..|++|+.|.|..|.|.++..  ++.+.++|+
T Consensus        17 dl~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldE--L~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDE--LEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHH--HHHHhcCch
Confidence            3567788999999999984  3468999999999999999976   67899999999999999998866  345789999


Q ss_pred             cceeeecchhH
Q psy18204        142 VKLLDFSKVKL  152 (435)
Q Consensus       142 L~~Ldl~~n~l  152 (435)
                      |+.|.|..|.-
T Consensus        90 Lr~LWL~ENPC  100 (388)
T KOG2123|consen   90 LRTLWLDENPC  100 (388)
T ss_pred             hhhHhhccCCc
Confidence            99999999864

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.85  E-value=0.0037  Score=61.69  Aligned_cols=54  Identities=7%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             CCcceEEEecCC-CcccccccccCCCCCCEEEccCC-CCCCcCCCCCCCCCCEEEccCCcccc
Q psy18204         18 PVKDRELDLRGY-KIPVIENMGATLDQFDTIDFSNN-DIRKIDGFPLLKRLSCLFFNNNRIVR   78 (435)
Q Consensus        18 ~~~L~~L~L~~n-~i~~i~~~~~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~ls~N~i~~   78 (435)
                      +++|++|.+++| .++.+|..+  ..+|+.|++++| .+..+|     ..|+.|.++.|.+..
T Consensus        71 P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~~  126 (426)
T PRK15386         71 PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSATDS  126 (426)
T ss_pred             CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEEeCCCCCcc
Confidence            457999999884 567777654  368999999998 665544     347777777766543

>PRK04974 glycerol-3-phosphate acyltransferase; Validated

Probab=96.75  E-value=0.0016  Score=70.00  Aligned_cols=137  Identities=14%  Similarity=0.227  Sum_probs=77.3

Q ss_pred             EEEec-CCCc----ccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChH
Q psy18204        164 IILSG-DSID----AGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD  238 (435)
Q Consensus       164 l~lsg-n~i~----~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~  238 (435)
                      +.+.| +.+.    ...+.++++||++++|.+.+....+..+   .....+..+.. ..+|++||.+...|.+|++|+..
T Consensus       286 i~V~g~e~L~~~~~~~~~vI~v~NHrS~lD~llL~~~l~~~g---l~~p~iAagen-l~~p~lg~llr~~GaffIrR~~~  361 (818)
T PRK04974        286 INVHNAERVRQLAQDGHEIVYVPCHRSHMDYLLLSYVLYHQG---LVPPHIAAGIN-LNFWPAGPIFRRGGAFFIRRSFK  361 (818)
T ss_pred             eEEcchhhhhhcccCCCCEEEEeCCCCchHHHHHHHHHhhcC---CCCceEEehHH-hcchHHHHHHHHCCceEeeCCCC
Confidence            66666 3343    3347899999999999988765554322   11122333444 48999999999999999999865


Q ss_pred             HhHH---HHHHHHHHhhcCCCchhhhHHHhhhhcCccCccc-c-HHHHhhhcccccCCccccccCCCCCCCCCEEEEEEe
Q psy18204        239 SDQQ---AMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKEL-Q-KEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITV  313 (435)
Q Consensus       239 ~d~~---~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~-~-~~l~pr~~~~~~~~~~~~l~~~~~~~~~~~vyD~Ti  313 (435)
                      .+..   .+......+...+         .....++||++- . ..+.||.+.+..  +++..-  .....=-.|+=|.|
T Consensus       362 ~~~ly~~vl~~yi~~ll~~G---------~~v~iFpEGtRSRtGkllppK~G~l~~--a~~a~~--~~~~~dv~IVPVsI  428 (818)
T PRK04974        362 GNKLYSTVFREYLGELFARG---------YSVEYFVEGGRSRTGRLLQPKTGMLAM--TLQAML--RGSRRPITLVPVYI  428 (818)
T ss_pred             chHHHHHHHHHHHHHHHhCC---------CEEEEEcCCCcCCCCCCcchhhhHHHH--HHHHhh--cccCCCcEEEEEEE
Confidence            5432   2333333332222         234556899853 2 223344433332  222110  00011125677788


Q ss_pred             ecCC
Q psy18204        314 GYLG  317 (435)
Q Consensus       314 ~Y~~  317 (435)
                      +|+.
T Consensus       429 sYek  432 (818)
T PRK04974        429 GYEH  432 (818)
T ss_pred             eccc
Confidence            8863

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=96.75  E-value=0.0037  Score=67.68  Aligned_cols=93  Identities=16%  Similarity=0.204  Sum_probs=66.3

Q ss_pred             EEEEecC-CCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHhH
Q psy18204        163 EIILSGD-SIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQ  241 (435)
Q Consensus       163 ~l~lsgn-~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d~  241 (435)
                      .+.+.|. ++......++++||++.+|.+.+....       ..+..+++|.++...|++||.+...++++++|.-   .
T Consensus        15 ~~~v~g~~~~~~~~~~i~v~NH~s~~D~~~l~~~~-------~~~~~~~~k~~l~~~~~~~~~~~~~~~i~v~r~~---~   84 (718)
T PRK08043         15 RVRVTGDTQALKGERVLITPNHVSFLDGILLALFL-------PVRPVFAVYTSISQQWYMRWLKPYIDFVPLDPTK---P   84 (718)
T ss_pred             EEEEEccccCCCCCCEEEEECCCchHHHHHHHHhC-------CCCeEEEEeHHHhhhHHHHHHHHhCCEEEecCCC---H
Confidence            3444553 355567789999999999998875432       1245578899999999999999999999999863   3


Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        242 QAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       242 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                      ..++...+.+++          +..+..|||||.
T Consensus        85 ~~~~~~~~~l~~----------g~~~~iFPEGtr  108 (718)
T PRK08043         85 MAIKHLVRLVEQ----------GRPVVIFPEGRI  108 (718)
T ss_pred             HHHHHHHHHHhC----------CCEEEEeCCCcc
Confidence            345554444432          234667899985

>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional

Probab=96.69  E-value=0.0016  Score=69.75  Aligned_cols=64  Identities=11%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             cccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHh
Q psy18204        174 GDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSD  240 (435)
Q Consensus       174 ~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d  240 (435)
                      ....+++.||++++|.+.+....+..+   +....+..++++..+|++||.+...|.+|++|+...|
T Consensus       628 ~~pvVfVpNHRS~lDyLLLsyvL~~~G---L~~P~IAAGdNLL~~P~LG~LLR~~GAFFIRRsf~~d  691 (1108)
T PTZ00374        628 RVAVVLLPLHRSYIDFIIMTYLLAVMG---LPLPHVCAGDDFLRMGPIATLMRGSGAFFMRRSFRDD  691 (1108)
T ss_pred             CCcEEEEeCCccchHHHHHHHHHHhCC---CCceEEEEchhhhcchHHHHHHHHCCeEEEeCCCCch
Confidence            458899999999999998866654333   3345688999999999999999999999999997543

>TIGR03703 plsB glycerol-3-phosphate O-acyltransferase

Probab=96.64  E-value=0.0022  Score=68.77  Aligned_cols=137  Identities=15%  Similarity=0.244  Sum_probs=79.8

Q ss_pred             EEEec-CCCc----ccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChH
Q psy18204        164 IILSG-DSID----AGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD  238 (435)
Q Consensus       164 l~lsg-n~i~----~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~  238 (435)
                      +.+.| +.+.    ...+.++++||++++|.+.+...++..+   .....+..+..+ .+|++||.++..|.+|++|+..
T Consensus       276 v~V~g~E~l~~~~~~~~pvI~vpNHrS~lD~llL~~~l~~~~---l~~p~iaag~nL-~~p~~g~llr~~GaffIrR~~~  351 (799)
T TIGR03703       276 INVNNADRVRKLAQKGHEIIYVPCHRSHMDYLLLSYVLYHEG---LVPPHIAAGINL-NFWPAGPIFRRGGAFFIRRSFK  351 (799)
T ss_pred             eEEechhhcccccCCCCcEEEEECCCCchHHHHHHHHHhhcC---CCCceEEechhh-ccHHHHHHHHHCCceEeecCCC
Confidence            55666 3344    2347899999999999988765554322   223345556677 6999999999999999999875


Q ss_pred             HhH---HHHHHHHHHhhcCCCchhhhHHHhhhhcCccCccc-cHHH-HhhhcccccCCccccccCCCCCCCCCEEEEEEe
Q psy18204        239 SDQ---QAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKEL-QKEI-SKKAKTFVPGAALQDLSNIPTGNQLNAVYDITV  313 (435)
Q Consensus       239 ~d~---~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~-~~~l-~pr~~~~~~~~~~~~l~~~~~~~~~~~vyD~Ti  313 (435)
                      .+.   +.+.+....+...         +.....|+||++- ...+ .||.+.+..  +++...  .....=-.|+=|.|
T Consensus       352 ~~~ly~~vl~eyi~~ll~~---------G~~v~iFpEGtRSrtGkll~pK~G~l~~--a~~a~~--~~~~~~v~IVPVsI  418 (799)
T TIGR03703       352 GNKLYSAVFREYLHELFAK---------GYSVEYFVEGGRSRTGRLLPPKTGMLAM--TLQAML--RGIRRPITLVPVYI  418 (799)
T ss_pred             cchhHHHHHHHHHHHHHhC---------CCEEEEEcCCCcCCCCCccchHHHHHHH--HHHHhh--ccCCCCcEEEEEEE
Confidence            543   2233333333322         2235567999863 2233 333333332  222111  00011224677788


Q ss_pred             ecCC
Q psy18204        314 GYLG  317 (435)
Q Consensus       314 ~Y~~  317 (435)
                      +|+.
T Consensus       419 ~Yek  422 (799)
T TIGR03703       419 GYEH  422 (799)
T ss_pred             eccc
Confidence            8864

Members of this protein family are PlsB, glycerol-3-phosphate O-acyltransferase, present in E. coli and numerous related species. In many bacteria, PlsB is not found, and appears to be replaced by a two enzyme system for 1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y system.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.46  E-value=0.0022  Score=73.00  Aligned_cols=108  Identities=17%  Similarity=0.293  Sum_probs=75.2

Q ss_pred             cEEEEecC-CCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHh
Q psy18204        162 TEIILSGD-SIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSD  240 (435)
Q Consensus       162 ~~l~lsgn-~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d  240 (435)
                      ..+.+.|. +++.....++.+||++.+|.+.+....       ....++++|+++..+|++||.+...++++++|.-  .
T Consensus       427 ~~~~v~g~e~lp~~~~~i~~~nH~s~~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~--~  497 (1146)
T PRK08633        427 YRLRVEGRENIPAKGGALLLGNHVSWIDWALLQAAS-------PRPIRFVMERSIYEKWYLKWFFKLFGVIPISSGG--S  497 (1146)
T ss_pred             EEEEEECCcCCCCCCCEEEEECCCchHHHHHHHHHc-------CCCeEEEeeHHhhhChhHHHHHHHCCEEEecCCC--h
Confidence            34556663 445567889999999999988875542       1346789999999999999999999999999974  3


Q ss_pred             HHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCccc-cHHHHhhhcccc
Q psy18204        241 QQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKEL-QKEISKKAKTFV  288 (435)
Q Consensus       241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~-~~~l~pr~~~~~  288 (435)
                      ++.++...+.+++          +.....|||||.- ...+.|..+|+.
T Consensus       498 ~~~~~~~~~~l~~----------g~~~~ifPeGt~~~~~~~~~~~~g~~  536 (1146)
T PRK08633        498 KESLEFIRKALDD----------GEVVCIFPEGAITRNGQLNEFKRGFE  536 (1146)
T ss_pred             HHHHHHHHHHHhC----------CCEEEEECCcCCCCCCCccchhHHHH
Confidence            3444444444443          2346678999953 234555555553

>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT

Probab=96.18  E-value=0.016  Score=52.81  Aligned_cols=96  Identities=11%  Similarity=0.107  Sum_probs=65.0

Q ss_pred             CcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccCh-------------
Q psy18204        171 IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNW-------------  237 (435)
Q Consensus       171 i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~-------------  237 (435)
                      +......++.+||++.+|-.++................++....+...|+++|.+...+-+++.|+-             
T Consensus        18 ip~~~~vIl~sNH~S~~Dp~ii~~~~~r~~~~lAk~~lf~ag~~~~~~pl~~~f~~~~~~~pV~r~k~~~~~P~~~~~k~   97 (235)
T cd07985          18 LAQGHNVVLLANHQTEADPAVISLLLEKTHPYLAENMIYVAGDRVVSDPLCKPFSMGRNLLCVHSKKHIDDPPELKEEKM   97 (235)
T ss_pred             ccCCCCEEEEECCcccccHHHHHHHhccccHHHhhhhheeccccccccHhHHHHHhhCCceeeecCcccccchhhhhhhh
Confidence            4456788999999999998776544322111111233445555555799999999999999999875             


Q ss_pred             HHhHHHHHHHHHHhhcCCCchhhhHHHhh-hhcCccCccc
Q psy18204        238 DSDQQAMTEQLDYFHDIQHPVQEKQEAAA-LFKSKKGKEL  276 (435)
Q Consensus       238 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~-~f~~~eG~~~  276 (435)
                      ..|.+.++...+.+++.          .. +..+||||+-
T Consensus        98 ~~~~~alk~~~~lLk~G----------~~~i~IfPEGtR~  127 (235)
T cd07985          98 KANLATLKEMQQLLNEG----------GQLIWVAPSGGRD  127 (235)
T ss_pred             hccHHHHHHHHHHHHcC----------CeEEEEcCCCCCC
Confidence            36677777777666543          22 4578999953

Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).

>KOG3763|consensus

Probab=95.99  E-value=0.0045  Score=62.18  Aligned_cols=90  Identities=28%  Similarity=0.348  Sum_probs=63.0

Q ss_pred             CCCCCCCEEEccCCccccccc--hhhcCCCCCCeeecCCC--cCCCCCCCCCCCCCCCCCEEEeecCCcccccc----ch
Q psy18204         61 PLLKRLSCLFFNNNRIVRIAE--NLQENLPNLETLILTGN--NIQELGDLDPLSTLPKLKTLCLLHNPVINRPH----YR  132 (435)
Q Consensus        61 ~~l~~L~~L~ls~N~i~~i~~--~~~~~l~~L~~L~Ls~N--~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~----~~  132 (435)
                      .+.+.+..++|++|++..+..  .+....|+|.+|+|++|  .+.....+..+++ ..|+.|-|.||++++--.    |.
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv  293 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYV  293 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHH
Confidence            355678888899999887642  34467799999999999  6665555544443 368999999999974322    22


Q ss_pred             HHHHhcCCccceeeecchh
Q psy18204        133 LYVAFKLPQVKLLDFSKVK  151 (435)
Q Consensus       133 ~~~~~~l~~L~~Ldl~~n~  151 (435)
                      .++...+|+|..||-...+
T Consensus       294 ~~i~~~FPKL~~LDG~ev~  312 (585)
T KOG3763|consen  294 SAIRELFPKLLRLDGVEVQ  312 (585)
T ss_pred             HHHHHhcchheeecCcccC
Confidence            2344588999998865443

>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis

Probab=95.96  E-value=0.045  Score=48.24  Aligned_cols=100  Identities=13%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             cccEEEEecC-CCcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccc-cCCccchhhhhhceeccccCh
Q psy18204        160 FGTEIILSGD-SIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIR-HAPGPGWVMQIAGFLYIERNW  237 (435)
Q Consensus       160 ~~~~l~lsgn-~i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk-~iP~~G~~~~~~~~ifl~R~~  237 (435)
                      ...++.+.|. .++.....++++||.+.+|++.++.....   .......++.+.... ..|+++|.    +.+++.|..
T Consensus        10 ~~~~~~~~g~~~~p~~~~~i~v~nH~s~~D~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~----g~~~i~r~~   82 (187)
T cd06551          10 GFVRLEVKGPPPPPGGGPVLFVSNHSSWWDGLILFLLLER---GLRRDVYGLMDEELLERYPFFTRL----GAFSVDRDS   82 (187)
T ss_pred             ceEEEEEeccccCCCCCCEEEEEcchhhHHHHHHHHHHHh---ccCCCeEEEEcHhhhhhChHHhhc----CeEEecCCC
Confidence            3467777774 45667789999999999999888766432   111345566666555 55665555    888888865


Q ss_pred             H-HhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        238 D-SDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       238 ~-~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                      . .+...++...+.+++.         +.....++||+.
T Consensus        83 ~~~~~~~~~~~~~~l~~~---------g~~v~ifPeG~~  112 (187)
T cd06551          83 PRSAAKSLKYVARLLSKP---------GSVVWIFPEGTR  112 (187)
T ss_pred             hhhHHHHHHHHHHHHhcC---------CcEEEEeCCccc
Confidence            4 3444555555555441         123456688884

Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p

>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924

Probab=95.83  E-value=0.011  Score=53.64  Aligned_cols=95  Identities=17%  Similarity=0.243  Sum_probs=63.7

Q ss_pred             cEEEEec-CCCcccccceeecCCccc-cccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChH-
Q psy18204        162 TEIILSG-DSIDAGDQALFIMNHRTR-LDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD-  238 (435)
Q Consensus       162 ~~l~lsg-n~i~~~~~~~~i~nh~~~-lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~-  238 (435)
                      .++.+.| +.+....++++++||++. +|.+.+.......    ....+++.|..+.++|++||.     +++++|.-. 
T Consensus         8 ~~v~v~G~e~lp~~g~~iiv~NH~s~~~D~~~l~~~~~~~----~~~~~~lak~~l~~~p~l~~~-----~i~v~r~~~~   78 (210)
T cd07986           8 LEVDVSGLENIPKDGPVVIVANHPFGILDGLILADLLGSV----RPDVRILANQLLSKIPELRDL-----FIPVDPLEGR   78 (210)
T ss_pred             EEEecCchhcCCCCCCEEEEEcCCccchHHHHHHHHHHHh----CCCeEEEeHHhhhhCcchHhh-----EEeccCCCCc
Confidence            4566666 446666789999999875 9987764332111    135778899999999999987     477777643 


Q ss_pred             ----HhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        239 ----SDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       239 ----~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                          ...+.+++..+.+++          +..++.+|||+.
T Consensus        79 ~~~~~~~~~~~~~~~~L~~----------G~~l~IFPEGtr  109 (210)
T cd07986          79 AALAKNRESLREALRHLKN----------GGALIIFPAGRV  109 (210)
T ss_pred             chhhhhHHHHHHHHHHHhC----------CCEEEEECCccc
Confidence                334455555555543          235677899984

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.70  E-value=0.0057  Score=33.69  Aligned_cols=18  Identities=22%  Similarity=0.351  Sum_probs=11.4

Q ss_pred             CCCEEEccCCccccccch
Q psy18204         65 RLSCLFFNNNRIVRIAEN   82 (435)
Q Consensus        65 ~L~~L~ls~N~i~~i~~~   82 (435)
                      +|++|++++|+|+.+|+.
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            356666666666666555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473|consensus

Probab=95.58  E-value=0.00023  Score=63.65  Aligned_cols=84  Identities=17%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             CCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEE
Q psy18204         40 TLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTL  118 (435)
Q Consensus        40 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L  118 (435)
                      ...+.+.||++.|++..+. .|+-+++|..|++|.|.|..+|.+. +....+..+++.+|..+..|.  .++..+.++.+
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~--s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPK--SQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCc--cccccCCcchh
Confidence            3455666666666666654 5666666666666666666665554 455555556666666665553  55556666666


Q ss_pred             EeecCCcc
Q psy18204        119 CLLHNPVI  126 (435)
Q Consensus       119 ~L~~N~i~  126 (435)
                      ++-+|+++
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            66555543

>PLN02588 glycerol-3-phosphate acyltransferase

Probab=95.57  E-value=0.018  Score=57.91  Aligned_cols=110  Identities=19%  Similarity=0.205  Sum_probs=72.1

Q ss_pred             hhhhcccEEEEecCCCc---ccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceec
Q psy18204        156 MNVMFGTEIILSGDSID---AGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLY  232 (435)
Q Consensus       156 ~~~~~~~~l~lsgn~i~---~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~if  232 (435)
                      .-..++..+.+.++...   .....++++||++.+|-+++......      .....+    ...+|.+||.+...+.++
T Consensus       305 ~~~~~Gvrl~v~g~~p~~~~~~~gvI~V~NH~S~LDPi~L~~Al~r------r~I~~m----tFsip~lg~lL~~i~ti~  374 (525)
T PLN02588        305 FLAFSGIHLTLTVNDLISSDRKKGCLFVCNHRTLLDPLYISYALRK------KNIKAV----TYSLSRLSELLAPIKTVR  374 (525)
T ss_pred             HHHHcCcEEEEEeCCCCCCCCCCCEEEEECCcchhhHHHHHHHccc------CcceEE----EEEhHHHHHHHHhcCcee
Confidence            44567788888866533   34688999999999996665333210      011111    123588999999999999


Q ss_pred             cccChHHhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCccc-cHHHHhhhccccc
Q psy18204        233 IERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKEL-QKEISKKAKTFVP  289 (435)
Q Consensus       233 l~R~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~-~~~l~pr~~~~~~  289 (435)
                      ++|....|.+.+.+.++.              .....+||||.- ...+.+...+++.
T Consensus       375 VdRdr~~D~~aI~~LLk~--------------GdlVIFPEGTRsr~g~LlrFk~l~A~  418 (525)
T PLN02588        375 LTRDRVKDGQAMEKLLSQ--------------GDLVVCPEGTTCREPYLLRFSPLFSE  418 (525)
T ss_pred             ecCCCcchHHHHHHHHhC--------------CCEEEccCccccCCCcccChhhhHHH
Confidence            999977777766444431              124578999973 3346666656654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.87  E-value=0.022  Score=32.67  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=15.5

Q ss_pred             CCCCCEEEccCCccccccchhhc
Q psy18204         63 LKRLSCLFFNNNRIVRIAENLQE   85 (435)
Q Consensus        63 l~~L~~L~ls~N~i~~i~~~~~~   85 (435)
                      +++|+.|+|++|+|+.+|++.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677777777777777766653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.87  E-value=0.022  Score=32.67  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=15.5

Q ss_pred             CCCCCEEEccCCccccccchhhc
Q psy18204         63 LKRLSCLFFNNNRIVRIAENLQE   85 (435)
Q Consensus        63 l~~L~~L~ls~N~i~~i~~~~~~   85 (435)
                      +++|+.|+|++|+|+.+|++.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677777777777777766653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.67  E-value=0.021  Score=29.22  Aligned_cols=13  Identities=38%  Similarity=0.529  Sum_probs=4.1

Q ss_pred             CCEEEccCCcccc
Q psy18204         66 LSCLFFNNNRIVR   78 (435)
Q Consensus        66 L~~L~ls~N~i~~   78 (435)
                      |+.|++++|+|+.
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            3444444444333

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.49  E-value=0.021  Score=31.39  Aligned_cols=19  Identities=26%  Similarity=0.225  Sum_probs=11.1

Q ss_pred             cceEEEecCCCcccccccc
Q psy18204         20 KDRELDLRGYKIPVIENMG   38 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~   38 (435)
                      +|++|++++|+|+.||..+
T Consensus         1 ~L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSSEESEEGTTT
T ss_pred             CccEEECCCCcCEeCChhh
Confidence            3566666666666665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.12  E-value=0.031  Score=28.62  Aligned_cols=15  Identities=47%  Similarity=0.620  Sum_probs=6.9

Q ss_pred             CCCeeecCCCcCCCC
Q psy18204         89 NLETLILTGNNIQEL  103 (435)
Q Consensus        89 ~L~~L~Ls~N~i~~l  103 (435)
                      +|+.|+|++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            456666666665544

...

>KOG0473|consensus

Probab=93.84  E-value=0.001  Score=59.72  Aligned_cols=94  Identities=22%  Similarity=0.255  Sum_probs=79.2

Q ss_pred             CCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204         53 DIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus        53 ~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      .++.++  .+....+.+.||++.|++..+...+ +-++.|..|+++.|.|.-++.  .++....++++++..|..++.|.
T Consensus        29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~--d~~q~~e~~~~~~~~n~~~~~p~  105 (326)
T KOG0473|consen   29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPK--DAKQQRETVNAASHKNNHSQQPK  105 (326)
T ss_pred             HhcccchhhhhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChh--hHHHHHHHHHHHhhccchhhCCc
Confidence            344444  5677789999999999999886665 778899999999999998886  77778889999999999998887


Q ss_pred             chHHHHhcCCccceeeecchhHH
Q psy18204        131 YRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       131 ~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                          ..+..|+++.+++.+|.+.
T Consensus       106 ----s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 ----SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ----cccccCCcchhhhccCcch
Confidence                3588999999999999864

>KOG3864|consensus

Probab=93.56  E-value=0.011  Score=52.16  Aligned_cols=79  Identities=27%  Similarity=0.349  Sum_probs=35.8

Q ss_pred             CCCEEEccCCCCCCc--CCCCCCCCCCEEEccCCcccc-c-cchhhcCCCCCCeeecCCC-cCCCCCCCCCCCCCCCCCE
Q psy18204         43 QFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR-I-AENLQENLPNLETLILTGN-NIQELGDLDPLSTLPKLKT  117 (435)
Q Consensus        43 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ls~N~i~~-i-~~~~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~l~~L~~  117 (435)
                      .++.+|-++..|...  +.+.+++.++.|.+.++.--+ . -+.+.+..++|+.|+|++| +|++-+ +..+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHH
Confidence            355566666655433  345555555555555544211 0 0112123345555555544 444433 234444555555


Q ss_pred             EEeec
Q psy18204        118 LCLLH  122 (435)
Q Consensus       118 L~L~~  122 (435)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            44443

>PLN02177 glycerol-3-phosphate acyltransferase

Probab=93.52  E-value=0.12  Score=52.85  Aligned_cols=110  Identities=16%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             HhhhhcccEEEEecCCC-cc---cccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhce
Q psy18204        155 LMNVMFGTEIILSGDSI-DA---GDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGF  230 (435)
Q Consensus       155 l~~~~~~~~l~lsgn~i-~~---~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~  230 (435)
                      ..-..++..+.+.|... +.   ....++++||++.+|.+.+.....       ....++.+    .+..++|.+...+.
T Consensus       277 ~~~~~~Gv~v~v~G~e~~p~~~~~~~~l~v~NHqS~lD~~~l~~al~-------~~~~~v~~----~~~~l~~~l~~i~~  345 (497)
T PLN02177        277 YNYKLLGIRLIVKGNPPPPPKKGQPGVLFVCNHRTVLDPVVTAVALG-------RKISCVTY----SISKFSELISPIKA  345 (497)
T ss_pred             HHHHHcCcEEEEEcCCCCCcccCCCCeEEEECCCCcchHHHHHHHcC-------CCeEEEee----hHHHHHHHHHhcCE
Confidence            34556778999999543 32   367899999999999987644321       11223222    23346888888899


Q ss_pred             eccccChHHhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCccc-cHHHHhhhccccc
Q psy18204        231 LYIERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKEL-QKEISKKAKTFVP  289 (435)
Q Consensus       231 ifl~R~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~-~~~l~pr~~~~~~  289 (435)
                      ++++|+..+|...+++.++.              .....+||||.- ...+.+.+.+|+.
T Consensus       346 ~~ldR~r~~~~~~~~~lL~~--------------g~lvIFPEGTrs~~~~l~~Fk~~fa~  391 (497)
T PLN02177        346 VALSREREKDAANIKRLLEE--------------GDLVICPEGTTCREPFLLRFSALFAE  391 (497)
T ss_pred             EEEeCCChHHHHHHHHHHhc--------------CCEEECcCcCCCCCCCcchHHHHHHH
Confidence            99999766666655544431              134678999963 2345566666643

>KOG1947|consensus

Probab=93.01  E-value=0.018  Score=58.81  Aligned_cols=108  Identities=22%  Similarity=0.258  Sum_probs=52.6

Q ss_pred             CCcceEEEecCC-Cccc--ccccccCCCCCCEEEccCC--CCCCcC-----CCCCCCCCCEEEccCCc-cccccc-hhhc
Q psy18204         18 PVKDRELDLRGY-KIPV--IENMGATLDQFDTIDFSNN--DIRKID-----GFPLLKRLSCLFFNNNR-IVRIAE-NLQE   85 (435)
Q Consensus        18 ~~~L~~L~L~~n-~i~~--i~~~~~~l~~L~~L~Ls~N--~l~~l~-----~l~~l~~L~~L~ls~N~-i~~i~~-~~~~   85 (435)
                      ++.|+.|.+.++ .+..  +......+++|+.|+++++  .+...+     ....+.+|+.|+++++. ++.+.- .+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            445555665555 2332  3344445666666666652  111111     12344566666666665 443321 2223


Q ss_pred             CCCCCCeeecCCCc-CCCCCCCCCCCCCCCCCEEEeecCCc
Q psy18204         86 NLPNLETLILTGNN-IQELGDLDPLSTLPKLKTLCLLHNPV  125 (435)
Q Consensus        86 ~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~N~i  125 (435)
                      .+++|+.|.+.++. +++..-......+++|+.|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            36666666655554 44433222334456666666665553

>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like

Probab=92.38  E-value=0.3  Score=42.81  Aligned_cols=85  Identities=19%  Similarity=0.398  Sum_probs=60.6

Q ss_pred             cEEEEecCC-CcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHH-
Q psy18204        162 TEIILSGDS-IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDS-  239 (435)
Q Consensus       162 ~~l~lsgn~-i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~-  239 (435)
                      ..+.+.+.. +......++++||.+.+|+..++...       .....++++..+...|+++|.+...+++++.+...+ 
T Consensus        10 ~~v~v~~~~~~~~~~~~i~~~nH~~~~D~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~   82 (184)
T cd07989          10 VRVRVEGLENLPPKGPVIIVANHQSYLDPLVLGAAL-------PRPIRFVAKKELFKIPFLGWLLRLLGAIPIDRGNGRS   82 (184)
T ss_pred             eEEEEEccccCCCCCCEEEEECCcchHHHHHHHhhc-------cCceEEEEhHHhhhCchHHHHHHHCCeEEEecCCchh
Confidence            345555533 33567788999999999997765442       235677888887789999999999999999887653 


Q ss_pred             hHHHHHHHHHHhhc
Q psy18204        240 DQQAMTEQLDYFHD  253 (435)
Q Consensus       240 d~~~~~~~~~~l~~  253 (435)
                      +...++...+.+++
T Consensus        83 ~~~~~~~~~~~l~~   96 (184)
T cd07989          83 AREALREAIEALKE   96 (184)
T ss_pred             HHHHHHHHHHHHHC
Confidence            45555555555543

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.

>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like

Probab=91.70  E-value=0.15  Score=46.22  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             EEec-CCCcccccceeecCCcccc-ccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccC
Q psy18204        165 ILSG-DSIDAGDQALFIMNHRTRL-DWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERN  236 (435)
Q Consensus       165 ~lsg-n~i~~~~~~~~i~nh~~~l-D~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~  236 (435)
                      .+.| +.++....+++++||.+.+ |.+.+......  ........++.+..+..+|++||.+..+|.+.++|.
T Consensus         9 ~v~g~e~lp~~~~~i~v~NH~s~~~D~~~l~~~~~~--~~~~~~~~~la~~~~~~~p~~~~~~~~~g~i~~~r~   80 (212)
T cd07987           9 EVRGLENIPDEGPALLVHPHGGLPIDGALLAAAFLL--LFPGRLPRALADHFLFPLPGLRDLLRRLGAVPGSRE   80 (212)
T ss_pred             EEeccccCCCCCcEEEEECCcchhHHHHHHHHHHHH--hCCCCeeEEeecccceeCccHHHHHHHcCCcccCHH
Confidence            4455 4455667899999999999 98877554111  011134556679999999999999999999987663

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.

>PRK11915 glycerol-3-phosphate acyltransferase; Reviewed

Probab=91.05  E-value=0.21  Score=52.01  Aligned_cols=90  Identities=14%  Similarity=0.078  Sum_probs=61.2

Q ss_pred             ccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHhH---HHHHHHHH
Q psy18204        173 AGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQ---QAMTEQLD  249 (435)
Q Consensus       173 ~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d~---~~~~~~~~  249 (435)
                      ...+.+++.||++++|.+.+....+...   ... ..+.-..--.+|.+|..+...|-+|++|..+.|+   ..+.+...
T Consensus       113 ~~~pvIfvp~HrS~lDylllsyvL~~~~---l~~-~~~~ag~nl~~~~lg~~lr~~GafFirRsf~~~~LY~~vl~eYi~  188 (621)
T PRK11915        113 RKATLAFAFSHRSYLDGMLLPEVILANR---LSP-ALTFGGANLNFFPMGAWAKRTGAIFIRRQTKDIPVYRFVLRAYAA  188 (621)
T ss_pred             cCCCEEEEeccccccHHHHHHHHHHHcC---CCC-ceeehhhhhcchhHHHHHHhCCcEEeccCCCCchHHHHHHHHHHH
Confidence            5678899999999999988866544322   111 2232233337788999999999999999988776   55656666


Q ss_pred             HhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        250 YFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       250 ~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                      .+...+.+         .-.|+||+.
T Consensus       189 ~ll~~G~~---------le~F~EG~R  205 (621)
T PRK11915        189 QLVQNHVN---------LTWSIEGGR  205 (621)
T ss_pred             HHHhCCCc---------EEEEeCCCC
Confidence            55544333         334579984

>KOG3864|consensus

Probab=90.85  E-value=0.09  Score=46.48  Aligned_cols=84  Identities=18%  Similarity=0.256  Sum_probs=60.7

Q ss_pred             CCCCEEEccCCccccccchhhcCCCCCCeeecCCCcC-CCCCCCCCCC-CCCCCCEEEeecCC-ccccccchHHHHhcCC
Q psy18204         64 KRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI-QELGDLDPLS-TLPKLKTLCLLHNP-VINRPHYRLYVAFKLP  140 (435)
Q Consensus        64 ~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i-~~l~~~~~l~-~l~~L~~L~L~~N~-i~~~~~~~~~~~~~l~  140 (435)
                      ..++.++.++..|..+.-.-+.+++.++.|.+.++.- .+.. ++-++ -.++|+.|++++|+ ||+   ..+..+..++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~---~GL~~L~~lk  176 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITD---GGLACLLKLK  176 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeech---hHHHHHHHhh
Confidence            3578999999999976554458899999999888843 3221 22233 36789999999997 554   3345678889


Q ss_pred             ccceeeecchh
Q psy18204        141 QVKLLDFSKVK  151 (435)
Q Consensus       141 ~L~~Ldl~~n~  151 (435)
                      +|+.|.+.+-+
T Consensus       177 nLr~L~l~~l~  187 (221)
T KOG3864|consen  177 NLRRLHLYDLP  187 (221)
T ss_pred             hhHHHHhcCch
Confidence            99888876544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.21  E-value=0.28  Score=28.15  Aligned_cols=16  Identities=38%  Similarity=0.804  Sum_probs=7.4

Q ss_pred             CCCEEEccCCCCCCcC
Q psy18204         43 QFDTIDFSNNDIRKID   58 (435)
Q Consensus        43 ~L~~L~Ls~N~l~~l~   58 (435)
                      +|+.|+|++|.|+.++
T Consensus         3 ~L~~L~L~~NkI~~IE   18 (26)
T smart00365        3 NLEELDLSQNKIKKIE   18 (26)
T ss_pred             ccCEEECCCCccceec
Confidence            4444444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.13  E-value=0.24  Score=28.25  Aligned_cols=17  Identities=41%  Similarity=0.626  Sum_probs=9.2

Q ss_pred             CCCCeeecCCCcCCCCC
Q psy18204         88 PNLETLILTGNNIQELG  104 (435)
Q Consensus        88 ~~L~~L~Ls~N~i~~l~  104 (435)
                      ++|++|+|++|+|+.++
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            44555555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.13  E-value=0.24  Score=28.25  Aligned_cols=17  Identities=41%  Similarity=0.626  Sum_probs=9.2

Q ss_pred             CCCCeeecCCCcCCCCC
Q psy18204         88 PNLETLILTGNNIQELG  104 (435)
Q Consensus        88 ~~L~~L~Ls~N~i~~l~  104 (435)
                      ++|++|+|++|+|+.++
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            44555555555555554

>PLN02499 glycerol-3-phosphate acyltransferase

Probab=89.07  E-value=0.39  Score=48.56  Aligned_cols=108  Identities=19%  Similarity=0.247  Sum_probs=67.7

Q ss_pred             hhhcccEEEEecCC-Cccc---ccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceec
Q psy18204        157 NVMFGTEIILSGDS-IDAG---DQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLY  232 (435)
Q Consensus       157 ~~~~~~~l~lsgn~-i~~~---~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~if  232 (435)
                      ....+..+.+.|.. ++..   ...++.+||++.+|-+++.....+       ...++.   +. ++.++|.+...+-+-
T Consensus       266 ~~~~G~~v~V~G~e~~P~~~~~~gvL~v~NH~S~lDp~~l~~al~R-------~v~~va---y~-~~~ls~ll~~i~avr  334 (498)
T PLN02499        266 SRIFGGKVIVKGKPPPPASGGNSGVLFVCTHRTLMDPVVLSTVLGR-------SIPAVT---YS-ISRLSEILSPIPTVR  334 (498)
T ss_pred             HHhcCceEEEEcCCCCCCcCCCCCEEEEeCCCCcccHHHHHHHcCC-------ceeehH---hh-HHHHHHHhcccCeee
Confidence            34566788888844 4333   478999999999998887543211       011111   11 455555665666667


Q ss_pred             cccChHHhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcccc-HHHHhhhccccc
Q psy18204        233 IERNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKELQ-KEISKKAKTFVP  289 (435)
Q Consensus       233 l~R~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~~~-~~l~pr~~~~~~  289 (435)
                      ++|....|.+.+++.++   +          + .+..+||||.-. ..+++.+.|++.
T Consensus       335 v~R~r~~d~~air~lL~---~----------G-~lvIFPEGTrsreg~LlrFk~l~ae  378 (498)
T PLN02499        335 LTRIRDVDAEKIKRELA---R----------G-DLVVCPEGTTCREPFLLRFSALFAE  378 (498)
T ss_pred             ecCCchhHHHHHHHHhh---C----------C-CEEEcCCCCCCCCCcccccchhhhh
Confidence            88887777777764432   1          2 266779999743 457777777765

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.90  E-value=0.31  Score=27.95  Aligned_cols=20  Identities=45%  Similarity=0.463  Sum_probs=17.3

Q ss_pred             CCcceEEEecCCCccccccc
Q psy18204         18 PVKDRELDLRGYKIPVIENM   37 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~   37 (435)
                      +.+|++|+|++|+|+.|+++
T Consensus         1 L~~L~~L~L~~NkI~~IEnL   20 (26)
T smart00365        1 LTNLEELDLSQNKIKKIENL   20 (26)
T ss_pred             CCccCEEECCCCccceecCc
Confidence            46899999999999988765

>KOG4341|consensus

Probab=88.32  E-value=0.25  Score=48.44  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=89.7

Q ss_pred             CCCcceEEEecCCC-cc--cccccccCCCCCCEEEccCCC-CCCcC--CC-CCCCCCCEEEccCCcccccc--chhhcCC
Q psy18204         17 NPVKDRELDLRGYK-IP--VIENMGATLDQFDTIDFSNND-IRKID--GF-PLLKRLSCLFFNNNRIVRIA--ENLQENL   87 (435)
Q Consensus        17 ~~~~L~~L~L~~n~-i~--~i~~~~~~l~~L~~L~Ls~N~-l~~l~--~l-~~l~~L~~L~ls~N~i~~i~--~~~~~~l   87 (435)
                      ++..|+.|+.+++. ++  .+..+.....+|+.|-++.++ ++...  .+ .+++.|+.+++..+......  ..+..++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            36688899998865 44  334667778899999998886 44432  22 45678999998887765321  2334688


Q ss_pred             CCCCeeecCCCcC-CCCCCCCCC----CCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhH
Q psy18204         88 PNLETLILTGNNI-QELGDLDPL----STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL  152 (435)
Q Consensus        88 ~~L~~L~Ls~N~i-~~l~~~~~l----~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l  152 (435)
                      +.|+.|.|+.+.. ++.+ +..+    .++..|..|.|++.+.+...  .+.-+..+++|+.+++-++.-
T Consensus       372 ~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLELDNCPLITDA--TLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             chhccCChhhhhhhhhhh-hhhhhhccccccccceeeecCCCCchHH--HHHHHhhCcccceeeeechhh
Confidence            9999999998754 4432 1122    34667888999999876432  233456788888888777653

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.14  E-value=0.48  Score=27.10  Aligned_cols=18  Identities=28%  Similarity=0.577  Sum_probs=12.6

Q ss_pred             CCCCeeecCCCcCCCCCC
Q psy18204         88 PNLETLILTGNNIQELGD  105 (435)
Q Consensus        88 ~~L~~L~Ls~N~i~~l~~  105 (435)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            456777777777777765

>KOG3729|consensus

Probab=86.09  E-value=0.4  Score=48.11  Aligned_cols=63  Identities=27%  Similarity=0.530  Sum_probs=45.5

Q ss_pred             cccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChHHh
Q psy18204        174 GDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSD  240 (435)
Q Consensus       174 ~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~~d  240 (435)
                      ..+.++..-|++++|.+.+.+..++.+.    +...++.-.--.||+|||....+|-.|++|+.+.+
T Consensus       157 g~PliFlPlHRSHlDYlliTwIL~~~~I----k~P~iAsGNNLnIP~Fg~Llr~LGaFFIrRriDp~  219 (715)
T KOG3729|consen  157 GIPMVFLPLHRSHLDYLLITWILWHFGI----KLPHIASGNNLNIPGFGWLLRALGAFFIRRRVDPD  219 (715)
T ss_pred             CCceEEEecchhhhhHHHHHHHHHhcCc----CCceeccCCccccchHHHHHHhcchheeeeccCCC
Confidence            5678899999999998877555443221    12223333445799999999999999999986544

>KOG3763|consensus

Probab=85.80  E-value=0.26  Score=49.91  Aligned_cols=86  Identities=24%  Similarity=0.298  Sum_probs=56.5

Q ss_pred             cCCCCCCEEEccCCCCCCcCCC----CCCCCCCEEEccCC--ccccccchhhcCCCCCCeeecCCCcCCCC-CC----CC
Q psy18204         39 ATLDQFDTIDFSNNDIRKIDGF----PLLKRLSCLFFNNN--RIVRIAENLQENLPNLETLILTGNNIQEL-GD----LD  107 (435)
Q Consensus        39 ~~l~~L~~L~Ls~N~l~~l~~l----~~l~~L~~L~ls~N--~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l-~~----~~  107 (435)
                      .+.+.+..++|++|++..++.+    ...++|+.|+|++|  .+..-.+----....|++|-+.+|.+.+- ..    +.
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence            3567789999999999988754    34588999999999  55543221111334689999999999642 21    00


Q ss_pred             -CCCCCCCCCEEEeecCCcc
Q psy18204        108 -PLSTLPKLKTLCLLHNPVI  126 (435)
Q Consensus       108 -~l~~l~~L~~L~L~~N~i~  126 (435)
                       .-..+|+|..||  |+.+.
T Consensus       295 ~i~~~FPKL~~LD--G~ev~  312 (585)
T KOG3763|consen  295 AIRELFPKLLRLD--GVEVQ  312 (585)
T ss_pred             HHHHhcchheeec--CcccC
Confidence             112577777665  54443

>KOG1947|consensus

Probab=85.37  E-value=0.25  Score=50.33  Aligned_cols=110  Identities=22%  Similarity=0.249  Sum_probs=69.8

Q ss_pred             CCCCCCEEEccCC-CCCC--cC-CCCCCCCCCEEEccCC--cccccc---chhhcCCCCCCeeecCCCc-CCCCCCCCCC
Q psy18204         40 TLDQFDTIDFSNN-DIRK--ID-GFPLLKRLSCLFFNNN--RIVRIA---ENLQENLPNLETLILTGNN-IQELGDLDPL  109 (435)
Q Consensus        40 ~l~~L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~ls~N--~i~~i~---~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l  109 (435)
                      .++.|+.|.+.++ .+..  +. ....+++|+.|+++.+  .++..+   ..+...+++|+.|++++.. +++.. +..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHHH
Confidence            4677788877776 3443  22 3466788888888863  222222   1234667888888888887 55544 2233


Q ss_pred             C-CCCCCCEEEeecCC-ccccccchHHHHhcCCccceeeecchhH
Q psy18204        110 S-TLPKLKTLCLLHNP-VINRPHYRLYVAFKLPQVKLLDFSKVKL  152 (435)
Q Consensus       110 ~-~l~~L~~L~L~~N~-i~~~~~~~~~~~~~l~~L~~Ldl~~n~l  152 (435)
                      . .|++|+.|.+.++. +++..-  ..+...++.|+.|+++.+..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCcc
Confidence            3 37888888877666 554322  22456788899998886654

>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374

Probab=85.29  E-value=1.1  Score=39.64  Aligned_cols=95  Identities=16%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             cEEEEecCC-Cc----ccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccC
Q psy18204        162 TEIILSGDS-ID----AGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERN  236 (435)
Q Consensus       162 ~~l~lsgn~-i~----~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~  236 (435)
                      ..+.+.|.. +.    ....+++++||++++|...++..        .....++.+. ....|+++|.+..++.++++|+
T Consensus         8 ~~~~v~g~e~l~~~~~~~~~~I~~~~H~s~l~~~~~~~~--------~~~~~~v~~~-~~~~~~~~~~~~~~g~~~i~r~   78 (189)
T cd07983           8 LRWRVIGDESADALIAQGEPVILAFWHGRLLLMPYLFRR--------RKRIAALISR-SKDGEIIARVLERLGIRVVRGS   78 (189)
T ss_pred             EeEEEeCchhhhhhccCCCCEEEEEeCchHHHhHHHhcc--------CCCeEEEEec-CcCHHHHHHHHHHhCCCEEEcC
Confidence            445556633 33    35678999999987775554321        1223344444 3457899999999999999876


Q ss_pred             hHH-hHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        237 WDS-DQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       237 ~~~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                      -.. ..+.++...+.+++.          ..+..++||+.
T Consensus        79 ~~~~~~~~~~~~~~~lk~g----------~~v~ifpeG~r  108 (189)
T cd07983          79 SSRGGAAALREMLRALKDG----------YNIAITPDGPR  108 (189)
T ss_pred             CCCcHHHHHHHHHHHHhCC----------CEEEEcCCCCC
Confidence            332 344566666655432          23456688874

Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.

>KOG4308|consensus

Probab=84.20  E-value=0.029  Score=57.23  Aligned_cols=132  Identities=26%  Similarity=0.203  Sum_probs=87.5

Q ss_pred             ceEEEecCCCccccc-----ccccCCCCCCEEEccCCCCCCcC------CCCCC-CCCCEEEccCCccccc-----cchh
Q psy18204         21 DRELDLRGYKIPVIE-----NMGATLDQFDTIDFSNNDIRKID------GFPLL-KRLSCLFFNNNRIVRI-----AENL   83 (435)
Q Consensus        21 L~~L~L~~n~i~~i~-----~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l-~~L~~L~ls~N~i~~i-----~~~~   83 (435)
                      +..|.|.+|.+..-.     ..+....+|+.|++++|.+....      .+... ..|++|.+..|.++..     ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            778888888886322     45667888999999999988542      24443 5678888888888853     2344


Q ss_pred             hcCCCCCCeeecCCCcCCCCCCC---CCCC----CCCCCCEEEeecCCccccccch-HHHHhcCCc-cceeeecchhHH
Q psy18204         84 QENLPNLETLILTGNNIQELGDL---DPLS----TLPKLKTLCLLHNPVINRPHYR-LYVAFKLPQ-VKLLDFSKVKLK  153 (435)
Q Consensus        84 ~~~l~~L~~L~Ls~N~i~~l~~~---~~l~----~l~~L~~L~L~~N~i~~~~~~~-~~~~~~l~~-L~~Ldl~~n~l~  153 (435)
                       .....|+.++++.|.+....-.   ..+.    ...++++|.+.+|.++...-.. ..++...++ +..|++..|++.
T Consensus       169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence             4478889999999988643321   1222    3667888999988887432211 123445555 666888888765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.40  E-value=0.58  Score=26.02  Aligned_cols=14  Identities=43%  Similarity=0.622  Sum_probs=5.7

Q ss_pred             CCCCEEEeecCCcc
Q psy18204        113 PKLKTLCLLHNPVI  126 (435)
Q Consensus       113 ~~L~~L~L~~N~i~  126 (435)
                      ++|+.|+|++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34445555555444

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	435
1a9n_A	176	Crystal Structure Of The Spliceosomal U2b''-U2a' Pr		2e-59
2jqd_A	169	Structure Of The Leucine-Rich Repeat Domain Of Lanp		2e-06
2ell_A	168	Solution Structure Of The Leucine Rich Repeat Of Hu		9e-06
2je0_A	149	Crystal Structure Of Pp32 Length = 149		1e-05
1ds9_A	198	Solution Structure Of Chlamydomonas Outer Arm Dynei		7e-05
1m9l_A	199	Relaxation-Based Refined Structure Of Chlamydomonas		7e-05
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		8e-04

>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein Complex Bound To A Fragment Of U2 Small Nuclear Rna Length = 176

Iteration: 1
 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 126/153 (82%)
Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLL+RL  L  NNNRI RI E L + LP+L  LILT N++ ELGDLDPL++L  L  LC+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 71  FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH 130
            + NRI    E L E  PNL+ L L+GN I++L  ++PL  L  LK+L L +  V N   
Sbjct: 76  LSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNA 135
Query: 131 YRLYVAFKLPQVKLLD 146
           YR  V   LPQV  LD
Sbjct: 136 YRENVFKLLPQVMYLD 151

>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family Member B Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 74  NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL 133
           NRI    + L E LPNL  L L+GN ++++  L+PL  L  LK+L L +  V N   YR 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140
Query: 134 YVAFKLPQVKLLD 146
            V   LPQ+  LD
Sbjct: 141 SVFKLLPQLTYLD 153

>pdb|2JE0|A Chain A, Crystal Structure Of Pp32 Length = 149

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 71  FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH 130
            ++NR+    E L E  PNL  L L+GN I++L  ++PL  L  LK+L L +  V N   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Query: 131 YRLYVAFKLPQVKLLD 146
           YR  V   LPQ+  LD
Sbjct: 131 YRENVFKLLPQLTYLD 146

>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 31/132 (23%)
Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           R L L    I  IEN+ A  D  + +  S N I  + G   L  L  L+ +NN+I     
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN--- 129
Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN-------RPHYRLY 134
                                 G++D L+ L KL+ L L  NP+ N          YR+ 
Sbjct: 130 ---------------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168
Query: 135 VAFKLPQVKLLD 146
           V  +LP +K LD
Sbjct: 169 VVKRLPNLKKLD 180

>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 31/132 (23%)
Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           R L L    I  IEN+ A  D  + +  S N I  + G   L  L  L+ +NN+I     
Sbjct: 74  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN--- 130
Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN-------RPHYRLY 134
                                 G++D L+ L KL+ L L  NP+ N          YR+ 
Sbjct: 131 ---------------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 169
Query: 135 VAFKLPQVKLLD 146
           V  +LP +K LD
Sbjct: 170 VVKRLPNLKKLD 181

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 41  LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
           L+  D I  +N+DI+ + G   L  L+ L  +NN+I  I+    + LPN+  L L GN  
Sbjct: 43  LNSIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGN-- 98
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
            +L D+ PL+ L  L  L L  N V
Sbjct: 99  -KLTDIKPLANLKNLGWLFLDENKV 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	435
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score =  196 bits (501), Expect = 1e-61
 Identities = 107/153 (69%), Positives = 126/153 (82%)

Query: 1   MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
           MVKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
           PLL+RL  L  NNNRI RI E L + LP+L  LILT N++ ELGDLDPL++L  L  LC+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
           L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score =  162 bits (412), Expect = 1e-48
 Identities = 42/140 (30%), Positives = 64/140 (45%)

Query: 14  QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNN 73
           +    V++  LD        IE + A     + +   N  +  +   P L +L  L  + 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80

Query: 74  NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL 133
           NRI    + L E LPNL  L L+GN ++++  L+PL  L  LK+L L +  V N   YR 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140

Query: 134 YVAFKLPQVKLLDFSKVKLK 153
            V   LPQ+  LD    + +
Sbjct: 141 SVFKLLPQLTYLDGYDREDQ 160

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score =  159 bits (403), Expect = 2e-47
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 3   KLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL 62
           ++  +L     +  + VK+  LD        +E +    ++ + +   N  +  I   P 
Sbjct: 6   RIHLELR---NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK 62

Query: 63  LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
           L +L  L  ++NR+    E L E  PNL  L L+GN I++L  ++PL  L  LK+L L +
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 123 NPVINRPHYRLYVAFKLPQVKLLD 146
             V N   YR  V   LPQ+  LD
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYLD 146

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  108 bits (272), Expect = 6e-28
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 11/138 (7%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF-PLLKRLSCLFFNNNRIVRIA 80
           + L L    I  I ++   ++    +    N I+KI+    +   L  L+ + N+I  + 
Sbjct: 51  KHLALSTNNIEKISSLS-GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL- 108

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR-------PHYRL 133
             + E L NL  L ++ N I   G++D L+ L KL+ L L  NP+ N          YR+
Sbjct: 109 SGI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167

Query: 134 YVAFKLPQVKLLDFSKVK 151
            V  +LP +K LD   V 
Sbjct: 168 EVVKRLPNLKKLDGMPVD 185

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  102 bits (256), Expect = 8e-24
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 8   LIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRL 66
           L+   +        R L L    + V+ ++   L     +D S+N +R +      L+ L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ-LLLVTHLDLSHNRLRALPPALAALRCL 488

Query: 67  SCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
             L  ++N +  + + +  NLP L+ L+L  N +Q+   + PL + P+L  L L  N + 
Sbjct: 489 EVLQASDNALENV-DGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

Query: 127 NRPHYRLYVAFKLPQVKLLD 146
                +  +A  LP V  + 
Sbjct: 547 QEEGIQERLAEMLPSVSSIL 566

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 88.6 bits (220), Expect = 7e-20
 Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           + L L    I  I  +   L Q +++   NN I  I     L +L  L   +N+I  I  
Sbjct: 115 KSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-V 172

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
            L   L  L+ L L+ N+I    DL  L+ L  L  L L     +N+P            
Sbjct: 173 PL-AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 142 VKLLDFSKVKLKALMN 157
           VK  D S V  + + +
Sbjct: 229 VKNTDGSLVTPEIISD 244

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            +L L G K+  I+ + A L     +    N ++ +     LK+L  L   +N I  I  
Sbjct: 71  TKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-N 128

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
            L  +LP LE+L L  N I    D+  LS L KL TL L  N +
Sbjct: 129 GL-VHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 20/134 (14%)

Query: 4   LTADLIVQCMQYTNPVKD----------RELDLRGYKIPVIENMGATLDQFDTIDFSNND 53
           L ++ I        P+K            + +L+   +         L+  D I  +N+D
Sbjct: 3   LGSETITVP----TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSD 57

Query: 54  IRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLP 113
           I+ + G   L  ++ LF N N++  I + L  NL NL  L L  N ++   DL  L  L 
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDI-KPL-ANLKNLGWLFLDENKVK---DLSSLKDLK 112

Query: 114 KLKTLCLLHNPVIN 127
           KLK+L L HN + +
Sbjct: 113 KLKSLSLEHNGISD 126

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L L   +I  I  + A L +   +  S N I  +     LK L  L   +   +    
Sbjct: 159 DTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 217

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLK 116
           N Q NL    T+  T  ++     +       K  
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 1e-18
 Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 6/167 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           + L L    I  I  +   L Q +++   NN I  I     L +L  L   +N+I  I  
Sbjct: 112 KSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-V 169

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
            L   L  L+ L L+ N+I    DL  L+ L  L  L L     +N+P            
Sbjct: 170 PLA-GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 142 VKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLD 188
           VK  D S V  + + +     +  +     +  ++  FI      + 
Sbjct: 226 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 8e-15
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            +L L G K+  I+ +   L     +    N I+ +     LK+L  L   +N I  I  
Sbjct: 68  TKLFLNGNKLTDIKPL-TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-N 125

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
            L  +LP LE+L L  N I    D+  LS L KL TL L  N +
Sbjct: 126 GL-VHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 2e-14
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            + +L+   +         L+  D I  +N+DI+ + G   L  ++ LF N N++  I +
Sbjct: 24  IKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-K 81

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
            L  NL NL  L L  N I+   DL  L  L KLK+L L HN + +
Sbjct: 82  PL-TNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISD 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 10/106 (9%)

Query: 50  SNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPL 109
            +  I++I                  +       Q  L +++ +I   ++I+    +  +
Sbjct: 7   VSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGI 61

Query: 110 STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
             LP +  L L  N + +     +     L  +  L   + K+K L
Sbjct: 62  QYLPNVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDENKIKDL 102

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 6/157 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L L   +I  I  + A L +   +  S N I  +     LK L  L   +   +    
Sbjct: 156 DTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
           N Q NL    T+  T  ++     +       K       H P        ++       
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV--KWHLPEFTNEVSFIFYQPVTIG 272

Query: 142 VKLLDFSKVKLKALM---NVMFGTEIILSGDSIDAGD 175
                F     + L     V +  +  +    ++AG 
Sbjct: 273 KAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGT 309

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 5/55 (9%), Positives = 15/55 (27%), Gaps = 5/55 (9%)

Query: 69  LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
               +  I +I     +         L   ++    D    + L  +  +   ++
Sbjct: 4   TITVSTPIKQI-FPD-DAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS 53

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            EL +   ++  +  + +       +   NN++R  D    LK L  L   NN++  I  
Sbjct: 88  EELSVNRNRLKNLNGIPSA--CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V 144

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
            L   L  LE L L GN I    +   L+ L K+  + L     +N P       +    
Sbjct: 145 ML-GFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 142 VKLLDFSKVKLKAL 155
           VK  D   +    +
Sbjct: 201 VKDPDGRWISPYYI 214

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 21/120 (17%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            + +L    +  + +    L      +  N++I+ + G      L  L  ++N+I  +  
Sbjct: 22  VKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL-S 79

Query: 82  NLQENLPNLETLILTGNNIQELG------------------DLDPLSTLPKLKTLCLLHN 123
            L ++L  LE L +  N ++ L                   D D L  L  L+ L + +N
Sbjct: 80  PL-KDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 23  ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN 82
           E   R   I  +      L      +     +  +     L  +     +N+ I  +   
Sbjct: 1   ESIQRPTPINQVFPD-PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AG 58

Query: 83  LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
           + +   NL+ L L+ N I    DL PL  L KL+ L +  N + N
Sbjct: 59  M-QFFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKN 99

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 72  NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY 131
               I ++       L N     L   ++    DL     L  ++     ++ + +    
Sbjct: 5   RPTPINQV-FPD-PGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS---- 55

Query: 132 RLYVAFKLPQVKLLDFSKVKLKAL 155
            L        +K L  S  ++  L
Sbjct: 56  -LAGMQFFTNLKELHLSHNQISDL 78

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 77.7 bits (191), Expect = 2e-16
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 5   TADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK 64
             + +   M        + LDL+G +              +        +R I+    + 
Sbjct: 113 QVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE--NIP 170

Query: 65  RLSCLFFNNNRIVRIA--ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
            L  L  +NNR+ R+    ++ +  PNL+ L L+GN ++   +LD +  L  L+ L L  
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDG 229

Query: 123 NPV----INRPHYRLYVAFKLPQVKLLD 146
           N +     ++  Y   +  + P++  LD
Sbjct: 230 NSLCDTFRDQSTYISAIRERFPKLLRLD 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.4 bits (191), Expect = 5e-16
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           + L L   +I  I  + A L     +   N  +  +     L +L+ L  ++N+I  I  
Sbjct: 132 QVLYLDLNQITNISPL-AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI-S 189

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
            L  +LPNL  + L  N I    D+ PL+    L  + L +  + N+P +          
Sbjct: 190 PL-ASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 142 VKLLDFSKVKLKALMN 157
           VK    + +    + +
Sbjct: 246 VKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 9e-15
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L   G  +  IE +   L+    ++  +N I  +     L +++ L  + N +  +  
Sbjct: 44  TTLSAFGTGVTTIEGVQY-LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-S 101

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
            +   L +++TL LT   I    D+ PL+ L  L+ L L  N + N
Sbjct: 102 AI-AGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITN 143

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 23  ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN 82
           ++      +       A LD   T+      +  I+G   L  L  L   +N+I  +   
Sbjct: 23  KIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL-AP 80

Query: 83  LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
           L +NL  +  L L+GN ++   ++  ++ L  +KTL L    + +
Sbjct: 81  L-KNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD 121

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 23/92 (25%), Gaps = 7/92 (7%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L     KI  I  + A+L     +   NN I  +        L  +   N  I     
Sbjct: 176 TTLKADDNKISDISPL-ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 82  NLQENLP------NLETLILTGNNIQELGDLD 107
               NL             +    I + G   
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISDNGTYA 266

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 2/106 (1%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             + L    +  +  +         +  +N      +    L  L  L      +     
Sbjct: 47  TYITLANINVTDLTGI-EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI 105

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
                L +L  L ++ +   +   L  ++TLPK+ ++ L +N  I 
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAIT 150

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 41  LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
           ++    I  +N ++  + G      +  L  NN         +   L NLE L + G ++
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPI-SGLSNLERLRIMGKDV 100

Query: 101 QELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK 149
                +  LS L  L  L + H+   +    ++     LP+V  +D S 
Sbjct: 101 TSD-KIPNLSGLTSLTLLDISHSAHDDSILTKIN---TLPKVNSIDLSY 145

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 22  RELDLRGYKI--PVIENMGATLDQFDTIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIV 77
             L + G  +    I N+ + L     +D S++         +  L +++ +  + N  +
Sbjct: 91  ERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
                L + LP L++L +  + +    D   +   PKL  L      +
Sbjct: 150 TDIMPL-KTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFS-NNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
             LD+              TL + ++ID S N  I  I     L  L  L    + +   
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174

Query: 80  AENLQENLPNLETLILTGNNIQEL 103
              + E+ P L  L      I   
Sbjct: 175 -RGI-EDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 8/69 (11%)

Query: 57  IDGFPL--LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPK 114
               P    K         +    I    +  + +L  + L   N+    DL  +     
Sbjct: 14  NVNIPDSTFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVT---DLTGIEYAHN 67

Query: 115 LKTLCLLHN 123
           +K L + + 
Sbjct: 68  IKDLTINNI 76

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 22  RELDLRGYKIPVIEN---MGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRI 76
                  + I   +     G        +D S+  +  ++   F  LK L  L    N+I
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 77  VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
            +IA+     L NL+ L L+ N + EL   +    LPK+  + L  N +           
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQ----T 357

Query: 137 FK-LPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFL 192
           FK L +++ LD     L  +  +    +I LSG+ +      + +  +   L  N L
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL-VTLPKINLTANLIHLSENRL 413

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 8e-11
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 7/145 (4%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRI- 76
           + L+L     P+  +  A   L     +D  ++ I  +  D F  L  L  L      + 
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

Query: 77  -VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYV 135
              + +    NL  L  L L+ N I+ L        L  LK++    +  I         
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI-DFSSNQIFLVCEHELE 169

Query: 136 AFKLPQVKLLDFSKVKLKALMNVMF 160
             +   +     +   L + ++V +
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDW 194

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 33/201 (16%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
             +DL+   I +I +     L++  T+D  +N +  I   P    +  +F + N++V + 
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP---SIPDIFLSGNKLVTLP 397

Query: 81  E--------NLQEN-------------LPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
           +        +L EN             +P+L+ LIL  N           S  P L+ L 
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 120 LLHNP--VINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSID 172
           L  N   +         V   L  +++L  +   L +L   +F        + L+ + + 
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 173 AGDQALFIMNHRT-RLDWNFL 192
                    N     +  N L
Sbjct: 518 VLSHNDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
              +   ++ ++    +L     L  + N I  +  +    L  L+ L L         D
Sbjct: 8   IAFYRFCNLTQV--PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 106 LDPLSTLPKLKTLCLLHNP 124
            +    LP L+ L L  + 
Sbjct: 66  KEAFRNLPNLRILDLGSSK 84

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 29/187 (15%)

Query: 22  RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNR 75
            EL L         + +     L     +D S N IR +     F  L  L  + F++N+
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 76  IVRIAENLQENL--PNLETLILTGNNIQELGDLDPLSTLPKLKTLCL----LHNPVINRP 129
           I  + E+  E L    L    L  N++     +D    +   + + L    +        
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 130 HYRL----------YVAFKLPQVKLLDFSKVKLKALMNVMFG-------TEIILSGDSID 172
                         +       +    F    +K      F          + LS   + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 173 AGDQALF 179
           + +  +F
Sbjct: 280 SLNSRVF 286

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 8/128 (6%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
           + L L    +  +   + + L     +  ++N +  +    L   L  L  + N+++   
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN 542

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
            +      +L  L +T N      +L           + +   P      Y         
Sbjct: 543 PD---VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDS----FS 595

Query: 141 QVKLLDFS 148
            V L   S
Sbjct: 596 GVSLFSLS 603

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 15/164 (9%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
            +LD+   KI ++ +     L    +++  +ND+  I    F  L  L  L      +  
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138
           I      +L  L  L L   NI  + D      L +LK L + H P ++           
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMT---PNCLY 222

Query: 139 LPQVKLLDFSKVKLKALMNVMFG-----TEIILSG---DSIDAG 174
              +  L  +   L A+  +          + LS     +I+  
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
           R LDL   +I  + ++  A+    + ++ + N +  ++   F  L  L  L   +NR+  
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138
           I   +   L NL  L ++ N I  L D      L  LK+L +  N ++   H     AF 
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHR----AFS 149

Query: 139 -LPQVKLLDFSKVKLKALMNVMF 160
            L  ++ L   K  L ++     
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEAL 172

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
             L +    +  +  +    L     ++ S N I  I+G     L RL  +     ++  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
           +       L  L  L ++GN +  L +     ++  L+TL L  NP
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 22  RELDLRGYK-IPVIENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
           + L++  +  +  +           ++  ++ ++  +       L  L  L  + N I  
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           I  ++   L  L+ + L G  +  + +      L  L+ L +  N
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
           R L+L    I  IE       L +   I      +  ++   F  L  L  L  + N++ 
Sbjct: 251 RFLNLSYNPISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 78  RIAENLQENLPNLETLILTGNNIQ 101
            + E++  ++ NLETLIL  N + 
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 46  TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
            +         + +G P       L    NRI  + ++   + P+LE L L  N +  + 
Sbjct: 15  AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 105 DLDPLSTLPKLKTLCLLHN 123
                + L  L+TL L  N
Sbjct: 73  P-GAFNNLFNLRTLGLRSN 90

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 10/134 (7%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            +L + G K+  I+ +   L   + ++ + N I  I     L +L+ L+   N+I  I  
Sbjct: 47  TKLVVAGEKVASIQGIE-YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-S 104

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
            L +NL NL  L L  +NI    D+ PL+ L K+ +L L  N  ++           +  
Sbjct: 105 AL-QNLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHNLSDLS----PLSNMTG 156

Query: 142 VKLLDFSKVKLKAL 155
           +  L  ++ K+K +
Sbjct: 157 LNYLTVTESKVKDV 170

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L +   KI  I  +   L     +  + ++I  I     L ++  L    N  +    
Sbjct: 91  TNLYIGTNKITDISALQ-NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            L  N+  L  L +T + ++   D+ P++ L  L +L L +N
Sbjct: 150 PL-SNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 3e-13
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L L   +I  I  +  +L          N I  I     + RL+ L   NN+I  +  
Sbjct: 180 YSLSLNYNQIEDISPLA-SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-S 237

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            L  NL  L  L +  N I    D++ +  L KLK L +  N
Sbjct: 238 PL-ANLSQLTWLEIGTNQIS---DINAVKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 5e-13
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L +   K+  +  +   L    ++  + N I  I     L  L       N+I  I  
Sbjct: 158 NYLTVTESKVKDVTPIA-NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-T 215

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            +  N+  L +L +  N I    DL PL+ L +L  L +  N
Sbjct: 216 PV-ANMTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 6e-13
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L++   +I  I  +   L +   ++  +N I  I     L +L+ LF NNN++     
Sbjct: 246 TWLEIGTNQISDINAVK-DLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
            +   L NL TL L+ N+I    D+ PL++L K+ +    +  +
Sbjct: 305 EVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 6e-12
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 23  ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN 82
            L      I  I    A L +          +  +     L+ ++ L     ++  I + 
Sbjct: 4   TLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI-QG 61

Query: 83  LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           + E L NLE L L GN I    D+ PLS L KL  L +  N
Sbjct: 62  I-EYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTN 98

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
                   +I  I  +   + + +++   NN I  +     L +L+ L    N+I  I  
Sbjct: 202 HYFTAYVNQITDITPVA-NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-N 259

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
            + ++L  L+ L +  N I    D+  L+ L +L +L L +N + N     +     L  
Sbjct: 260 AV-KDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDMEVI---GGLTN 312

Query: 142 VKLLDFS 148
           +  L  S
Sbjct: 313 LTTLFLS 319

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFS-NNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
           REL L    I  I  +   L +  +++   N+++  +     +  L+ L    +++  + 
Sbjct: 113 RELYLNEDNISDISPLA-NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV- 170

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
             +  NL +L +L L  N I+   D+ PL++L  L       N
Sbjct: 171 TPI-ANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRI 79
           + L++   +I  I  +   L Q +++  +NN +   D   +  L  L+ LF + N I  I
Sbjct: 268 KMLNVGSNQISDISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 80  AENLQENLPNLETLILTGNNIQE 102
              L  +L  +++       I++
Sbjct: 327 -RPL-ASLSKMDSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             LD+   K+  I  +   L   +++  +NN I  I    +L  L  L  N N++  I  
Sbjct: 180 ERLDISSNKVSDISVLA-KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT 238

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
               +L NL  L L  N I    +L PLS L KL  L L  N +
Sbjct: 239 --LASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 35/102 (34%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L      I  I+ +   L+    I+FSNN +  I     L +L  +  NNN+I  I  
Sbjct: 49  TTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-T 106

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            L  NL NL  L L  N I    D+DPL  L  L  L L  N
Sbjct: 107 PL-ANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSN 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            +LDL   +I  +  +   L +   +    N I  I     L  L+ L  N N++  I  
Sbjct: 246 TDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-S 303

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            +  NL NL  L L  NNI    D+ P+S+L KL+ L   +N
Sbjct: 304 PI-SNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNN 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 4   LTADLIVQCMQYT------NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI 57
           L +  I Q              +  +  L    +    +    LDQ  T+      I+ I
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSI 61

Query: 58  DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKT 117
           DG   L  L+ + F+NN++  I   L +NL  L  +++  N I    D+ PL+ L  L  
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDI-TPL-KNLTKLVDILMNNNQIA---DITPLANLTNLTG 116

Query: 118 LCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
           L L +N + +     +     L  +  L+ S   +  +
Sbjct: 117 LTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDI 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L L   +I  I+ +   L   + ++ S+N I  I     L  L  L F N   V   +
Sbjct: 115 TGLTLFNNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ--VTDLK 171

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            L  NL  LE L ++ N +    D+  L+ L  L++L   +N
Sbjct: 172 PL-ANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           ++L   G ++  ++ +   L   + +D S+N +  I     L  L  L   NN+I  I  
Sbjct: 159 QQLSF-GNQVTDLKPLA-NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI-T 215

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
            L   L NL+ L L GN ++   D+  L++L  L  L L +N + N
Sbjct: 216 PL-GILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L+L   ++  I  +   L     +    N+I  I     L +L  LFF NN++  +  
Sbjct: 290 TNLELNENQLEDISPIS-NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-S 347

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRP 129
           +L  NL N+  L    N I    DL PL+ L ++  L L      N P
Sbjct: 348 SL-ANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLNDQAWTNAP 391

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L L    I  I  +  +L +   + F NN +  +     L  ++ L   +N+I  +  
Sbjct: 312 TYLTLYFNNISDISPVS-SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL-T 369

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            L  NL  +  L L            P++    +     + N
Sbjct: 370 PL-ANLTRITQLGLNDQAWTNA----PVNYKANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 4/102 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           + L     K+  + ++   L   + +   +N I  +     L R++ L  N+        
Sbjct: 334 QRLFFYNNKVSDVSSLA-NLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPV 392

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           N + N+    T+    N    L     +S         +  N
Sbjct: 393 NYKANVSIPNTVK---NVTGALIAPATISDGGSYTEPDITWN 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 5e-13
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRI 79
           R L+L    +  I N+   L + D +D S N +  I    F  L  L  L+   ++I  I
Sbjct: 188 RYLNLAMCNLREIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
             N  +NL +L  + L  NN+  L   D  + L  L+ + L HNP
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 22  RELDLRGY-KIPVIENMG-ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
           R LDL    ++  I       L     ++ +  ++R+I     L +L  L  + N +  I
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
                + L +L+ L +  + IQ + + +    L  L  + L HN
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
             L L    I  IE  GA   L   +T++  +N +  I    F  L +L  L+  NN I 
Sbjct: 91  EILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149

Query: 78  RIAENLQENLPNLETLILTGNN-IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
            I       +P+L  L L     +  + +      L  L+ L L    +   P+      
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPNLT---- 204

Query: 137 FKLPQVKLLDFSKVKLKALMNVMF 160
             L ++  LD S   L A+    F
Sbjct: 205 -PLIKLDELDLSGNHLSAIRPGSF 227

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 46  TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            ++   N I+ I    F  L+ L  L  + N I  I       L NL TL L  N +  +
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLD 146
            +      L KLK L L +NP+ + P Y    AF  +P ++ LD
Sbjct: 128 PN-GAFVYLSKLKELWLRNNPIESIPSY----AFNRIPSLRRLD 166

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
            ELDL G  +  I       L     +    + I+ I+   F  L+ L  +   +N +  
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

Query: 79  IAENLQENLPNLETLILTGNNIQ 101
           +  +L   L +LE + L  N   
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 8e-13
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 22  RELDLRGY-KIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
             LDL    K+  I E     L     ++    +I+ +     L  L  L  + N    I
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
                  L +L+ L +  + +  + + +    L  L  L L HN
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRI 79
           + L+L    I  + N+   L   + ++ S N   +I    F  L  L  L+  N+++  I
Sbjct: 199 KYLNLGMCNIKDMPNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
             N  + L +L  L L  NN+  L   D  + L  L  L L HNP
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
             L L    I  IE  GA   L   +T++  +N +  I    F  L +L  L+  NN I 
Sbjct: 102 EVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160

Query: 78  RIAENLQENLPNLETLILTGNN-IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
            I       +P+L  L L     ++ + +      L  LK L L    + + P+      
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPNLT---- 215

Query: 137 FKLPQVKLLDFSKVKLKALMNVMF 160
             L  ++ L+ S      +    F
Sbjct: 216 -PLVGLEELEMSGNHFPEIRPGSF 238

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 46  TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            ++   N+I+ I    F  L  L  L    N I +I       L +L TL L  N +  +
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138

Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLD 146
                   L KL+ L L +NP+ + P Y    AF  +P +  LD
Sbjct: 139 PS-GAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLD 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
            EL++ G   P I       L     +   N+ +  I+   F  L  L  L   +N +  
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 79  IAENLQENLPNLETLILTGNNIQ 101
           +  +L   L  L  L L  N   
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWN 303

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 3/142 (2%)

Query: 22  RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRI 79
             ++L+ +    I  N          +D +   + ++  G   L  L  L  + N+   +
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL 139
            +    N P+L  L + GN  +       L  L  L+ L L H+  I            L
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNL 375

Query: 140 PQVKLLDFSKVKLKALMNVMFG 161
             ++ L+ S  +  +L    F 
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFK 397

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 9/133 (6%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKID----GFPLLKRLSCLFFNNNR 75
             L ++G    +    G    L+    +D S++DI   D        L  L  L  + N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 76  IVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYV 135
            + +     +  P LE L L    ++      P   L  LK L L H+ +          
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD- 446

Query: 136 AFKLPQVKLLDFS 148
              LP ++ L+  
Sbjct: 447 --GLPALQHLNLQ 457

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 46  TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            + F    I  ID  PL   K L  L+  +N I  I          L+ L    N I  L
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 104 --GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
              D+  L     L +L L  N +          AF     + L+F 
Sbjct: 169 SKEDMSSLQQATNL-SLNLNGNDIAGIEP----GAFDSAVFQSLNFG 210

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 11/147 (7%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG---FPLLKRLSCLFFNNNRIV 77
           + L+L   +   ++        Q + +D +   ++  D    F  L  L  L  +++ + 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHNPVINRPHYRLYV 135
             +E L + LP L+ L L GN+  +        L TL +L+ L L    + +   +    
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH---- 494

Query: 136 AFK-LPQVKLLDFSKVKLKALMNVMFG 161
           AF  L  +  +D S  +L +       
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALS 521

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            ++FS N +  I    F  L  L+ L     +I  I E+  ++   L+TL+LT N +  +
Sbjct: 37  CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96

Query: 104 GDLDPLSTLPKLKTLCLLHN 123
            +   LS    LK L  +  
Sbjct: 97  AE-TALSGPKALKHLFFIQT 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
           T +  N  + +I G  L     CL F+ N +  I       L NL  L LT   I  + +
Sbjct: 16  TYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
            D   +  +L TL L  NP+I         A      +K L F +  + ++  +   
Sbjct: 75  -DTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLH 126

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 46  TIDFSNNDIRKIDGFPL-----LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
            ++   N   K +         L RL  L  +   +  I ++   +L  +  + L+ N +
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 101 QELGDLDPLSTLPKLKTLCLLHN 123
                ++ LS L  +  L L  N
Sbjct: 513 TSS-SIEALSHLKGI-YLNLASN 533

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 21/173 (12%), Positives = 44/173 (25%), Gaps = 39/173 (22%)

Query: 22  RELDLRGYKIPVIENMGATLD-----QFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNR 75
           + LD +   I  +      +         +++ + NDI  I+ G         L F   +
Sbjct: 156 KVLDFQNNAIHYLSK--EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 76  IVR--IAENLQENLPNLETLILTGNNIQE-----------------------LGDLDP-- 108
            +           + +L        + ++                         ++    
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 109 LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG 161
                 L+ L L    +   P         L  +K L  S  K + L  +   
Sbjct: 274 FHCFSGLQELDLTATHLSELPSG----LVGLSTLKKLVLSANKFENLCQISAS 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 22  RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
             L L    +  + ++   +L   + +D S+N +          LK +  L   +N I  
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISI 537

Query: 79  IAENLQENLPNLETLILTGNNIQ 101
           I  +L   L    T+ L  N + 
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLD 560

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 13/189 (6%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
           + LDL   KI  I +           +   ++ I  I+G  F  L  L  L  ++N +  
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF- 137
           ++ +    L +L+ L L GN  Q LG       L  L+TL + +    +         F 
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFA 145

Query: 138 KLPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSIDAGDQALF-IMNHRTRLDWNF 191
            L  +  L+   + L+   +           + L         +    I++    L+   
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 192 LWGCMFHAS 200
                F  S
Sbjct: 206 TNLARFQFS 214

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
           R L +  + +      + + L++   I   N+ +  +       LK L  L  + N +V 
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 79  IA---ENLQENLPNLETLILTGNNIQELGDL-DPLSTLPKLKTLCLLHNPVINRPHYRLY 134
                   +   P+L+TL+L+ N+++ +    + L TL  L +L +  N   +       
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSC- 406

Query: 135 VAFKLPQVKLLDFS 148
                 +++ L+ S
Sbjct: 407 --QWPEKMRFLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 16  TNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNR 75
             P K R L+L    I V++         + +D SNN++     F  L RL  L+ + N+
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNK 462

Query: 76  IVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
           +  + +      P L  + ++ N ++ +        L  L+ + L  NP
Sbjct: 463 LKTLPDAS--LFPVLLVMKISRNQLKSV-PDGIFDRLTSLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 48  DFSNNDIRKIDGFPLLK--RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
           DF+ ++   +     ++   +  L      +      +   L  ++ + +  + +  +  
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
                 L  L+ L L  N ++             P ++ L  S+  L+++
Sbjct: 328 -SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 24/123 (19%)

Query: 22  RELDLRGYKIPVIENMGATLDQFD---TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV 77
           + L L    +  ++  G  L       ++D S N    + D     +++  L  ++  I 
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423

Query: 78  RIA-----------------ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
            +                  ++    LP L+ L ++ N ++    L   S  P L  + +
Sbjct: 424 VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK---TLPDASLFPVLLVMKI 480

Query: 121 LHN 123
             N
Sbjct: 481 SRN 483

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 46  TIDFSNNDIRKIDGFP--LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
             D  +     I   P  L   +  L  + N+I  I         NL+ LIL  + I  +
Sbjct: 9   VCDGRSRSFTSI---PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKALMN 157
              D   +L  L+ L L  N + +         F  L  +K L+      + L  
Sbjct: 66  EG-DAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGV 115

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             LD+    +         L +   +  S N ++ +    L   L  +  + N++  + +
Sbjct: 434 EVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490

Query: 82  NLQENLPNLETLILTGNNIQ 101
            + + L +L+ + L  N   
Sbjct: 491 GIFDRLTSLQKIWLHTNPWD 510

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            ELD     I V+        +   +   +N++           L  +  + N + +I  
Sbjct: 208 EELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
           +    +  LE L ++ N +  L        +P LK L L HN +++          +  +
Sbjct: 266 HPFVKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHLLHVER----NQPQFDR 319

Query: 142 VKLLDFSKVKLKAL 155
           ++ L      +  L
Sbjct: 320 LENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
           + +  +   +  +   +  +  Q + ++ ++  I +ID   F     +  L+   N I  
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           +  ++ +N+P L  L+L  N++  L         PKL TL + +N
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 28/159 (17%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
             L L    +  +   +     +  T+  SNN++ +I+   F     L  L  ++NR+  
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTL---------------PKLKTLCLLHN 123
           +  +    +P+L    ++ N +  L     +  L                +L  L L HN
Sbjct: 180 VDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236

Query: 124 PVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
            + +             P +  +D S  +L+ +M   F 
Sbjct: 237 NLTDTA------WLLNYPGLVEVDLSYNELEKIMYHPFV 269

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIA 80
             L +   ++  +   G  +     +D S+N +  ++   P   RL  L+ ++N IV + 
Sbjct: 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
            +       L+ L L+ N+            + +     +    
Sbjct: 335 LS---THHTLKNLTLSHNDWDCNSLRALFRNVARPA---VDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 47  IDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
           ID    D+        L     + F N+ + ++   L ++   +E L L    I+E+   
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT- 86

Query: 107 DPLSTLPKLKTLCLLHN 123
              +    ++ L +  N
Sbjct: 87  YAFAYAHTIQKLYMGFN 103

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            ELD     I V+        +   +   +N++           L  +  + N + +I  
Sbjct: 214 EELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 271

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
           +    +  LE L ++ N +  L        +P LK L L HN +++          +  +
Sbjct: 272 HPFVKMQRLERLYISNNRLVALNLY--GQPIPTLKVLDLSHNHLLHVER----NQPQFDR 325

Query: 142 VKLLDFSKVKLKAL 155
           ++ L      +  L
Sbjct: 326 LENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 10/161 (6%)

Query: 22  RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
             L+L   +I  I+    A       +    N IR +    F  +  L+ L    N +  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138
           +   +  N P L TL ++ NN++ + D D       L+ L L  N + +           
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD------LSL 190

Query: 139 LPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALF 179
           +P +   + S   L  L   +   E+  S +SI+     + 
Sbjct: 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
           + +  +   +  +   +  +  Q + ++ ++  I +ID   F     +  L+   N I  
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           +  ++ +N+P L  L+L  N++  L         PKL TL + +N
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNN 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 40  TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97
           TL+    + F N+ +RK+        +++  L  N+ +I  I          ++ L +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 98  NNIQELGDLDPLSTLPKLKTLCLLHN 123
           N I+ L        +P L  L L  N
Sbjct: 109 NAIRYL-PPHVFQNVPLLTVLVLERN 133

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           + L L   ++  ++   + +      + S N +  +    +   +  L  ++N I  +  
Sbjct: 174 QNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVRG 228

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            +      L  L L  NN+ +      L   P L  + L +N
Sbjct: 229 PV---NVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYN 264

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIA 80
             L +   ++  +   G  +     +D S+N +  ++   P   RL  L+ ++N IV + 
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTL 118
            +       L+ L L+ N+            + +    
Sbjct: 341 LS---THHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 375

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 47  IDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
           ID    D+        L     + F N+ + ++   L ++   +E L L    I+E+   
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT- 92

Query: 107 DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
              +    ++ L +  N +   P +     F+ +P + +L   +  L +L   +F 
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFH 144

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
           + LDL   +I  IE+ GA  +L    T+  + N I+ +    F  L  L  L      + 
Sbjct: 55  QVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
            +      +L  L+ L +  N IQ     +  S L  L+ L L  N + +     L V  
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 138 KLPQVKL-LDFSKVKLKAL 155
           ++P + L LD S   +  +
Sbjct: 174 QMPLLNLSLDLSLNPMNFI 192

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            +D S N +R +    F     L  L  +   I  I +   ++L +L TLILTGN IQ L
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
                 S L  L+ L  +   + +  ++        L  +K L+ +   +++ 
Sbjct: 92  AL-GAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSF 139

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 34/164 (20%)

Query: 22  RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV 77
             LDL                       +D S N +  +   F  L++L  L F ++ + 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 78  RIAE--------NLQE-----------------NLPNLETLILTGNNIQELGDLDPLSTL 112
           +++E        NL                    L +LE L + GN+ QE    D  + L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 113 PKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
             L  L L     + +       AF  L  +++L+ +  +LK++
Sbjct: 470 RNLTFLDLSQCQ-LEQLSPT---AFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIV 77
             LD+      V  N     L   + +  + N  ++    D F  L+ L+ L  +  ++ 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
           +++     +L +L+ L +  N ++ +        L  L+ + L  NP
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 24/135 (17%)

Query: 41  LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE----NLQE----------- 85
           L    +    +  I ++  F        L   N +  +       +L+            
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 86  ----NLPNLETLILTGNNIQELGDL-DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
               +LP+LE L L+ N +   G           LK L L  N VI            L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLE 396

Query: 141 QVKLLDFSKVKLKAL 155
           Q++ LDF    LK +
Sbjct: 397 QLEHLDFQHSNLKQM 411

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 46  TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101
            +D S   + ++    F  L  L  L   +N++  + + + + L +L+ + L  N   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVR 78
           R LDL      ++      L++   +DF ++ ++++     F  L++L  L  +      
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
             + +   L +L TL + GN+ ++    +  +    L  L L   
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 22  RELDLRGYKIPVIEN---MGATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIV 77
             LDL    +             +    +D S N    +   F  L+ L  L F ++ + 
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412

Query: 78  RIAE-NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
           R+ E +   +L  L  L ++  N +   D      L  L TL +  N   +         
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN---V 468

Query: 137 FK-LPQVKLLDFSKVKLKALMNVMFG-----TEIILSG 168
           F     +  LD SK +L+ +   +F        + +S 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL----LKRLSCLFFNNNRIV 77
           + L L   K  +       L     +D S N +               L  L  + N  +
Sbjct: 331 KSLTLTMNKGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
            ++ N    L  L+ L    + ++ + +     +L KL  L + +               
Sbjct: 390 IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL--- 445

Query: 138 KLPQVKLLDFS 148
            L  +  L  +
Sbjct: 446 GLTSLNTLKMA 456

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
           + LDL   +I  IE+     L     +  + N I+      F  L  L  L     ++  
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           +       L  L+ L +  N I         S L  L  + L +N
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
            +  +   I+ ++  P   +   L     ++ +       +LP L++L LT N       
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGS---I 342

Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
                 LP L  L L  N  ++      Y       ++ LD S
Sbjct: 343 SFKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLS 384

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            ID S N ++ +    F     L  L  +   I  I +     L +L  LILTGN IQ  
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 104 GDLDPLSTLPKLKTLCLLHN 123
                 S L  L+ L  +  
Sbjct: 96  SP-GSFSGLTSLENLVAVET 114

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 46  TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            +D S   + +I    F  L RL  L  ++N ++ +  +    L +L TL  + N I+  
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 104 GDLDPLSTLPKLKTLCLLHNP 124
                      L    L +N 
Sbjct: 537 -KGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 46  TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAEN-LQENLPNLETLILTGNNIQE 102
            +      +  ++ FP+  L  L  L   +N I          NL NL  + L+ N IQ 
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 103 L--GDLDPLSTLPK-LKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
           +   DL  L   P+   +L +  NP+          AF+  ++  L   
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ----AFQGIKLHELTLR 212

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
           T    +  + K+  D     K +     + N +  +      N   L+ L L+   I+ +
Sbjct: 15  TYQCMDQKLSKVPDDIPSSTKNID---LSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
            D      L  L  L L  NP+ +        +F  L  ++ L   + KL +L +   G
Sbjct: 72  ED-KAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSLENLVAVETKLASLESFPIG 125

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 29/169 (17%), Positives = 48/169 (28%), Gaps = 35/169 (20%)

Query: 22  RELDLRGYKI--PVIENMGATLDQFDTIDFSNNDIRKI--------DGFPLLKRLSCLFF 71
            EL LRG      +++     L           + +               L  ++   F
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 72  --NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLD------------------PLST 111
                            L N+  + L G +I+ L D+                   P   
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 112 LPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMF 160
           LP LK+L L  N   +    ++     LP +  LD S+  L       +
Sbjct: 327 LPFLKSLTLTMNK-GSISFKKV----ALPSLSYLDLSRNALSFSGCCSY 370

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 22  RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
             LDL   ++  +   +  TL +   ++ S+N++  +D   +  L  LS L  + NRI  
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 79  IAENLQENLPNLETLILTGNNI 100
               LQ    +L    LT N++
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 19/168 (11%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSC----LFFNN 73
           ++L++    I   +       L     +D S N I+ I       L+        L  + 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 74  NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV-----INR 128
           N I  I +   + +  L  L L GN          L  L  L    L+         +  
Sbjct: 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 129 PHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSI 171
               +        +     +     +   V F      + + L+G SI
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 18  PVKDRELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNN 74
               + LDL   +I  I N           +  ++N I  I+   F  L  L  L  + N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 75  RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
            +  ++ +  + L +L  L L GN  + LG+    S L KL+ L + +    
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 11/150 (7%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNND-IRKI--DGFPLLKRLSCLFFNNNRI 76
             L+L G     +        L +   +   N D   KI    F  L  L  L  + + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 77  VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL-YV 135
                   +++ N+  LIL       L ++  +     ++ L L    +       L   
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIF-VDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 136 AF----KLPQVKLLDFSKVKLKALMNVMFG 161
                 K    + +  +   L  +M ++  
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI----------DGFPLLKRLSCLF 70
             L L   +  ++ E         + ++  + D+             +          + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 71  FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
             +  + ++ + L   +  L  L  + N ++ + D      L  L+ + L  NP
Sbjct: 261 ITDESLFQVMKLLN-QISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 41  LDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99
              F  +  ++  + ++      +  L  L F+ N++  + + + + L +L+ + L  N 
Sbjct: 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

Query: 100 IQ 101
             
Sbjct: 313 WD 314

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 15/106 (14%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 22  RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVR 78
           +   +      + P   ++   + +   +D  +N +R ++ F    +L+ L  + N+I  
Sbjct: 551 QIFYMGYNNLEEFPASASLQK-MVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE 609

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
           I E+       +E L  + N ++ + ++    ++  + ++   +N 
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 50  SNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQE---------NLPNLETLILTGNN 99
           +  ++ ++ D    L  L  L    NR +  A+   +           P ++   +  NN
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 100 IQELGDLDPLSTLPKLKTLCLLHN 123
           ++E      L  + KL  L  +HN
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHN 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 17/118 (14%)

Query: 22  RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKI-------DGFPLLKRLSCLFF 71
             L         IP I N   ++    ++DFS N I                   S +  
Sbjct: 622 EGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 72  NNNRIVRIAENLQENLPNLETLILTGNNIQEL------GDLDPLSTLPKLKTLCLLHN 123
           + N I +    L      + T+IL+ N +  +                 L T+ L  N
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 13/87 (14%)

Query: 46  TIDFSNNDIRKI-DGFPLLKRL------SCLFFNNNRIVR-IAENLQENLPNLETLILTG 97
            +D S N             +L             NRI+R     +    P+L  L +  
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGS 815

Query: 98  NNIQELGDLDPLSTLPKLKTLCLLHNP 124
           N+I+++         P+L  L +  NP
Sbjct: 816 NDIRKV----DEKLTPQLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 19/166 (11%)

Query: 4   LTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQF-------DTIDFSNNDIRK 56
           L  D I +  +     KD  + L+  +I  + N    + +          I F+N+    
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS---P 459

Query: 57  IDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDP-LSTLPKL 115
                +         +  +     E    NL +L  + L       +  L   L  LP+L
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN--MTQLPDFLYDLPEL 517

Query: 116 KTLCLLHN-----PVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
           ++L +  N       +     RL       P++++       L+  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVR 78
           + LDL    +  + +    L+Q + +DF +++++++     F  L+ L  L  ++     
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
               +   L +LE L + GN+ QE    D  + L  L  L L   
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 22  RELDLRG--YKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
             L + G  ++   + ++   L     +D S   + ++    F  L  L  L  ++N   
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 78  RIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNP 124
            +     + L +L+ L  + N+I      +L    +   L  L L  N 
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--SLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 10/114 (8%)

Query: 45  DTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
             I  ++  +  +  G P     + L   +N++  +   + + L  L  L L+ N +   
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 104 GDLDP-LSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
           G           LK L L  N VI          F  L Q++ LDF    LK +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQM 116

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
             LDL   ++  +      +L     ++ S+N+   +D   +  L  L  L ++ N I+ 
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 79  IAENLQENLP-NLETLILTGNNIQ 101
             +   ++ P +L  L LT N+  
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 22  RELDLRGYKIPVIEN--MGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
           + LDL+  +I  +    + A+ D  + ++   N I  + G  +  +L  L  ++N++  +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
                ++   +  + L  N +  +     L     L+   L  N 
Sbjct: 207 GPEF-QSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNG 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 26/134 (19%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           R LDL    +  +   G +++   T+  +NN+I ++      +    ++  NN+I  + +
Sbjct: 83  RTLDLNNNYVQELLV-GPSIE---TLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRD 137

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
             +     ++ L L  N I  +   +  ++   L+ L L +N + +             +
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----QVVFAK 192

Query: 142 VKLLDFSKVKLKAL 155
           +K LD S  KL  +
Sbjct: 193 LKTLDLSSNKLAFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIA 80
             L+L+   I  ++       +  T+D S+N +  +   F     ++ +   NN++V I 
Sbjct: 172 EHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTL 118
           + L+    NLE   L GN        D  S   +++T+
Sbjct: 231 KALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
           +   +    +     ++  +      +D S N + +I         +L  L  ++N +  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
             +   E+L  L TL L  N +QE      L   P ++TL   +N
Sbjct: 73  TLDL--ESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 41  LDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
            +++     +++ +++           +  L  + N + +I+         LE L L+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 99  NIQELGDLDPLSTLPKLKTLCLLHN 123
            + E      L +L  L+TL L +N
Sbjct: 69  VLYETL---DLESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 60  FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
                R       ++ + +   +L+++  N++ L L+GN + ++     L+   KL+ L 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLN 64

Query: 120 LLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
           L  N +             L  ++ LD +   ++ L
Sbjct: 65  LSSNVLYETLDLE-----SLSTLRTLDLNNNYVQEL 95

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
           + L L+   +  + +     L     +    N I  +    F  L  L  L  + NR+  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
           +  +   +L  L TL L  NN+  L   + L+ L  L+ L L  NP
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
             L L    +  +   G    L     +   +N ++ +  D F  L  L+ LF + NRI 
Sbjct: 108 HTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
            + E     L +L+ L+L  N +  +        L +L TL L  N +   P      A 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTE----AL 221

Query: 138 K-LPQVKLLDFS 148
             L  ++ L  +
Sbjct: 222 APLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNN-DIRKI--DGFPLLKRLSCLFFNNNRIV 77
             L L    +  I+      L   + +D S+N  +R +    F  L RL  L  +   + 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
            +   L   L  L+ L L  N +Q L D D    L  L  L L  N + + P      AF
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPER----AF 173

Query: 138 K-LPQVKLLDFSKVKLKAL 155
           + L  +  L   + ++  +
Sbjct: 174 RGLHSLDRLLLHQNRVAHV 192

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
             L L G +I  +       L   D +    N +  +    F  L RL  L+   N +  
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 79  IAENLQENLPNLETLILTGNNIQ 101
           +       L  L+ L L  N   
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 46  TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
           T       ++ +  G P       +F + NRI  +         NL  L L  N +  + 
Sbjct: 15  TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 105 DLDPLSTLPKLKTLCLLHNPVI 126
                + L  L+ L L  N  +
Sbjct: 73  A-AAFTGLALLEQLDLSDNAQL 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 22  RELDLRGYKIPVIE--NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
           + LDL+  +I  +    + A+ D  + ++   N I  + G  +  +L  L  ++N++  +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
                ++   +  + L  N +  +     L     L+   L  N 
Sbjct: 207 GPEF-QSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           R LDL    +  +          +T+  +NN+I ++      +    ++  NN+I  + +
Sbjct: 83  RTLDLNNNYVQELLV----GPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRD 137

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
             +     ++ L L  N I  +   +  ++   L+ L L +N
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA 80
             L+L+   I  ++       +  T+D S+N +  +   F     ++ +   NN++V I 
Sbjct: 172 EHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
           + L+    NLE   L GN        D  S   +++T+       +
Sbjct: 231 KALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 41  LDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
            +++     +++ +++           +  L  + N + +I+         LE L L+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 99  NIQELGDLDPLSTLPKLKTLCLLHN 123
            + E      L +L  L+TL L +N
Sbjct: 69  VLYETL---DLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 60  FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
                R       ++ + +   +L+++  N++ L L+GN + ++     L+   KL+ L 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLN 64

Query: 120 LLHN 123
           L  N
Sbjct: 65  LSSN 68

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 17/146 (11%), Positives = 44/146 (30%), Gaps = 13/146 (8%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVR 78
             + LR  K+ +IE         +  D   N        D F   +R+  +      + +
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKK 274

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYV--- 135
           +    +E               ++L    P     +L  L    + +++           
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDL----PAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 136 -AFKLPQVKLLDFSKVKLKALMNVMF 160
                 + + +D  K + + +++ + 
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVT 356

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRI 79
             + +    I  I            +    N I K+D      L  L+ L  + N I  +
Sbjct: 174 SYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHNP 124
                 N P+L  L L  N + ++    P  L+    ++ + L +N 
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKV----PGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
            EL L G KI  +       L+    +  S N I  +D         L  L  NNN++V+
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

Query: 79  IAENLQENLPNLETLILTGNNIQELGD-----LDPLSTLPKLKTLCLLHNPV 125
           +   L  +   ++ + L  NNI  +G          +       + L  NPV
Sbjct: 255 VPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            +D  NN I +I    F  LK L  L   NN+I +I+      L  LE L L+ N ++EL
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 104 GDLDPLSTLPKLKTLCLLHN 123
               P      L+ L +  N
Sbjct: 116 ----PEKMPKTLQELRVHEN 131

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 20/177 (11%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRI--V 77
             L L   ++  +            +    N+I K+    F  L ++  +    N +   
Sbjct: 103 ERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
            I     + +  L  + +   NI  +    P    P L  L L  N +          + 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTI----PQGLPPSLTELHLDGNKITKVDAA----SL 212

Query: 138 K-LPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSIDAGDQALFIMNHRTRLD 188
           K L  +  L  S   + A+ N          E+ L+ + +      L    +   + 
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 269

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVR 78
            +L L    I  ++N G+         +  +NN + K+  G    K +  ++ +NN I  
Sbjct: 219 AKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277

Query: 79  IAEN------LQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
           I  N            +   + L  N +Q   ++ P     +     + L + 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 22  RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
             L L   KI  I     A L + + +  S N ++++    + K L  L  + N I ++ 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR 137

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
           +++   L  +  + L  N ++  G ++      + KL  + +   
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSG-IENGAFQGMKKLSYIRIADT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 46  TIDFSNNDIRKIDG---FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE 102
            +D S+N++ ++        L  L  L  ++N +  I+      +PNL  L L+ N++  
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 103 LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
           L +    S L  L+ L L +N ++         AF  + Q++ L  S+ ++   
Sbjct: 103 LDEFL-FSDLQALEVLLLYNNHIVVVDRN----AFEDMAQLQKLYLSQNQISRF 151

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 22  RELDLRGYKIPVIENMGATLDQFD------TIDFSNNDIRKIDG--FPLLKRLSCLFFNN 73
           R LDL    +  ++        F        +   NN I  +D   F  + +L  L+ + 
Sbjct: 91  RYLDLSSNHLHTLDE-----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 74  NRIVRIAENL---QENLPNLETLILTGNNIQELGDLDPLSTLPKLK--TLCLLHNP 124
           N+I R    L      LP L  L L+ N +++L     L  LP      L L +NP
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNP 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 22  RELDLRGYKIPVIENMGATLDQFD------TIDFSNNDIRKI-----DGFPLLKRLSCLF 70
             L L    I V++      + F+       +  S N I +           L +L  L 
Sbjct: 115 EVLLLYNNHIVVVDR-----NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169

Query: 71  FNNNRIVRIAENLQENLPNL--ETLILTGNNIQ 101
            ++N++ ++     + LP      L L  N ++
Sbjct: 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRI 79
             L +   K+  I       +  + +   +N I+ I+        +L  L   +N+I  I
Sbjct: 175 NYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHNP 124
                  LP L  L L  N +  +    P  L  L  L+ + L  N 
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRV----PAGLPDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 22  RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
            EL L   KI  IE        +   +   +N IR I+      L  L  L  +NN++ R
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255

Query: 79  IAENLQENLPNLETLILTGNNIQELG-----DLDPLSTLPKLKTLCLLHNPV 125
           +   L  +L  L+ + L  NNI ++G      +           + L +NPV
Sbjct: 256 VPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            +D  NNDI ++  D F  L+ L  L   NN+I +I E     L  L+ L ++ N++ E+
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117

Query: 104 GDLDPLSTLPKLKTLCLLHN 123
               P +    L  L +  N
Sbjct: 118 ----PPNLPSSLVELRIHDN 133

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 35/196 (17%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
             L L   KI  I    A   L +   +  S N + +I    L   L  L  ++NRI ++
Sbjct: 81  YALVLVNNKISKIHE-KAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKV 138

Query: 80  AENLQENLPNLETLILTGNNIQE------------LGDLD---------PLSTLPKLKTL 118
            + +   L N+  + + GN ++             L  L          P      L  L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198

Query: 119 CLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSID 172
            L HN +                ++  L     +++ + N          E+ L  + + 
Sbjct: 199 HLDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254

Query: 173 AGDQALFIMNHRTRLD 188
                L  +     + 
Sbjct: 255 RVPAGLPDLKLLQVVY 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
             L+L   ++  +         Q  ++D   N I K+  +    L  L  L   +N + +
Sbjct: 28  TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           +++       NL  L L  N+IQ++ + +P      L TL L HN
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHN 131

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 13/193 (6%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
             LD+    I  +E       L     ++  +N++ ++    F     L+ L   +N I 
Sbjct: 52  TSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
           +I  N      NL TL L+ N +     L     L  L+ L L +N  I          F
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNN-KIQALKSEELDIF 168

Query: 138 KLPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSIDAG-DQALFIMNHRTRLDWNF 191
               +K L+ S  ++K      F        + L+   +     + L +    T +    
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 192 LWGCMFHASRPSA 204
           L       +  + 
Sbjct: 229 LSNSQLSTTSNTT 241

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 10/152 (6%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIV 77
             L+L   KI  IE+   + L   + +D   N+I +      +  L+ +  ++ + N+ +
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 78  RIAENLQENLPNLETLILTGNNIQELGD-LDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
           ++  N    +P+L+ L+L    ++ +     P   L  L  L L +N + N         
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN----DDM 499

Query: 137 FK-LPQVKLLDFSKVKLKALMNVMFGTEIILS 167
            + L ++++LD     L  L         I  
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 11/114 (9%)

Query: 22  RELDLRGYKIPVIENMGAT---------LDQFDTIDFSNNDIRKI--DGFPLLKRLSCLF 70
             LDL+   +  +               L     ++  +N   +I  + F  L  L  + 
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 71  FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
              N +  +  ++  N  +L++L L  N I  +           L  L +  NP
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 22  RELDLRGYKI----PVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLK--RLSCLFFNN 73
             L L   ++         +         +  SN+ +       F  LK   L+ L  + 
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 74  NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           N +  +  +    LP LE   L  NNIQ L     L  L  ++ L L  +
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPN--LETLILTGNNIQ 101
           T+D S+N +          L+ L  L  +NN+I  +     +   N  L+ L L+ N I+
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 102 ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG 161
           E         + +L  L L +  +      +L +      ++ L  S  +L    N  F 
Sbjct: 185 EFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)

Query: 22  RELDLRGYKIPVIEN---MGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRI 76
           R L L   ++    N   +G        +D S N++  +  D F  L +L   F   N I
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 77  VRIAENLQENLPNLETLILTGNNIQ------ELGDLDP--LSTLPKLKTLCLLHNPVINR 128
             +  +    L N+  L L  +  +       L  +D      L  L+ L +  N +   
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 129 PHYRLYVAFKLPQVKLLDFS 148
                     L  +K L  S
Sbjct: 345 KSNMF---TGLINLKYLSLS 361

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 10/141 (7%)

Query: 22  RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI----DGFPLL--KRLSCLFFNNN 74
             L++    IP +  NM   L     +  SN+         + F  L    L  L    N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 75  RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLY 134
           +I +I  +    L +LE L L  N I +         L  +  + L +N  +        
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 135 VAFKLPQVKLLDFSKVKLKAL 155
               +P ++ L   +V LK +
Sbjct: 452 ---LVPSLQRLMLRRVALKNV 469

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 45  DTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
           +  D S+  + ++    L   ++ L   +N++ R+          L +L +  N I +L 
Sbjct: 7   EVADCSHLKLTQVP-DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 105 DLDPLSTLPKLKTLCLLHNP 124
             +    LP LK L L HN 
Sbjct: 66  P-ELCQKLPMLKVLNLQHNE 84

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 33/144 (22%), Positives = 47/144 (32%), Gaps = 22/144 (15%)

Query: 22  RELDLRGYKI-----PVIENMGA--TLDQ---FDTIDFSNNDIRKIDGFPL--LKRLSCL 69
               L    I       +  +     L+    F     S   + KID F    LK L  L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 70  FFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLS----TLPKLKTLCLLHNPV 125
              +N I  I  N+   L NL+ L L+ +    L  L   +        L  L L  N +
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 126 INRPHYRLYVAF-KLPQVKLLDFS 148
                     AF  L  +++LD  
Sbjct: 394 SKIESD----AFSWLGHLEVLDLG 413

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 6/97 (6%)

Query: 22  RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
             L+L       +   +   L +   ID   N++  +    F     L  L    N I  
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 79  IAEN-LQENLPNLETLILTGNNIQELGDLDPLSTLPK 114
           + +        NL  L +  N        + ++    
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFD--CTCESIAWFVN 633

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 30  KIPVIENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENL 87
                   G       T D S + I  +    F     L  L    N I +I +N    L
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 88  PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLD 146
            +L  L L+ N +  +        L KL+ L L +N +          +F  LP +K L 
Sbjct: 323 THLLKLNLSQNFLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQ----SFLGLPNLKELA 377

Query: 147 FSKVKLKALMNVMF 160
               +LK++ + +F
Sbjct: 378 LDTNQLKSVPDGIF 391

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 9/141 (6%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-----DGFPLLKRLSCLFFNNN 74
           + L +      ++        L     +    N   ++     +G   L+ L+ L   N 
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT-LTQCNL 115

Query: 75  RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLY 134
               ++ N  + L +LE L+L  NNI+++        + +   L L  N V +     L 
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 135 VAFKLPQVKLLDFSKVKLKAL 155
             F+     LL  S + L+ +
Sbjct: 176 -NFQGKHFTLLRLSSITLQDM 195

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
            +L L   +I  I++  A   L     ++ S N +  ID   F  L +L  L  + N I 
Sbjct: 302 EQLTLAQNEINKIDD-NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
            + +     LPNL+ L L  N ++ + D      L  L+ + L  NP
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNP 406

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFS-NNDIRKIDG--FPLLKRLSCLF-FNNNRI 76
           + L L    +  I +   + L     I  S +  +++++   F  L +++ +   N   +
Sbjct: 34  QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93

Query: 77  VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
             I  +  + LP L+ L +    ++   DL  + +      L +  NP +
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 45  DTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
           +    +  DI++I   P       L      +  I  +   NLPN+  + ++ +    L 
Sbjct: 14  EDFRVTCKDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--TLQ 69

Query: 105 DLDP--LSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKAL 155
            L+      L K+  + + +   +         A K LP +K L      LK  
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPD---ALKELPLLKFLGIFNTGLKMF 120

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 11/86 (12%)

Query: 48  DFSNNDIRKIDGFPLLKRLSCLFF----NNNRIVRIAENLQENLPN-LETLILTGNNIQE 102
              N  ++       +      F     +N  +  I  N  + L N   TL L  N    
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170

Query: 103 LGD--LDPLSTLPKLKTLCLLHNPVI 126
           +     +      KL  + L  N  +
Sbjct: 171 VQGYAFN----GTKLDAVYLNKNKYL 192

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 46  TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPN-LETLILTGNNIQE 102
           T+   NN    + G  F   K  +     N  +  I ++    + +    L ++  ++  
Sbjct: 160 TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

Query: 103 LGDLDPLSTLPKLKTLCLLHNP 124
           L    P   L  LK L   +  
Sbjct: 220 L----PSKGLEHLKELIARNTW 237

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 50  SNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL--GD 105
           +   ++ ++      L  L  L    + +  +A +     P L  L L+ N ++ L    
Sbjct: 40  NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99

Query: 106 LDPLSTLPKLKTLCLLHNP 124
           +  LS    L+ L L  NP
Sbjct: 100 VQGLS----LQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 50  SNNDIRKIDGFPLLKRLSCLFF-NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDP 108
            +  +  +   P  + L+ L+  N   +  +       L  L  L +  + ++ +   D 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DA 75

Query: 109 LSTLPKLKTLCLLHN 123
               P+L  L L  N
Sbjct: 76  FHFTPRLSRLNLSFN 90

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 13/110 (11%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
           ++D  N+ I  + G   L  L+ L   +N I  +  +L     NL  L    N +  L  
Sbjct: 46  SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--DLS-QNTNLTYLACDSNKLTNL-- 100

Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
              ++ L KL  L    N +            + P +  L+ ++  L  +
Sbjct: 101 --DVTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEI 142

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
            +D     I ++D      +L  L+ NN  +  +  ++  +   L++L     +IQ   D
Sbjct: 301 LLDCQAAGITELD-LSQNPKLVYLYLNNTELTEL--DV-SHNTKLKSLSCVNAHIQ---D 353

Query: 106 LDPLSTLPKLKTLCLLHNPVIN 127
              +  +P L          I 
Sbjct: 354 FSSVGKIPALNNNFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 12/81 (14%)

Query: 46  TIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            ++   N+I K+D      L  L C   ++N++  I  ++   L  L     + N + EL
Sbjct: 195 RLNCDTNNITKLDLNQNIQLTFLDC---SSNKLTEI--DV-TPLTQLTYFDCSVNPLTEL 248

Query: 104 GDLDPLSTLPKLKTLCLLHNP 124
                +STL KL TL  +   
Sbjct: 249 ----DVSTLSKLTTLHCIQTD 265

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRI 79
              D     +  ++   +TL +  T+     D+ +ID      L           + + +
Sbjct: 236 TYFDCSVNPLTELDV--STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV 293

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
                 +   L  L      I EL     LS  PKL  L L + 
Sbjct: 294 T-----HNTQLYLLDCQAAGITEL----DLSQNPKLVYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 15/134 (11%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             L     K+  ++     L +   ++   N + K+D       L+ L    N +  I  
Sbjct: 88  TYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDV 144

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
               +   L  L    N      D   ++   +L TL    N +       L V+ +   
Sbjct: 145 ---SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-----LDVS-QNKL 192

Query: 142 VKLLDFSKVKLKAL 155
           +  L+     +  L
Sbjct: 193 LNRLNCDTNNITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 63  LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
                   F       I+   +E L  L +L    ++I    D+  +  L  L  L    
Sbjct: 20  FASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTS 73

Query: 123 N 123
           N
Sbjct: 74  N 74

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            +D S N +R +    F     L  L  +   I  I +   ++L +L TLILTGN IQ L
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 104 GDLDPLSTLPKLKTLCLLHN 123
             L   S L  L+ L  +  
Sbjct: 92  -ALGAFSGLSSLQKLVAVET 110

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 24/130 (18%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQE-------------------N 86
           +    +  I ++  F        L   N +  +      +                   +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 87  LPNLETLILTGNNIQELGDLDP-LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLL 145
           LP+LE L L+ N +   G           LK L L  N VI            L Q++ L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHL 401

Query: 146 DFSKVKLKAL 155
           DF    LK +
Sbjct: 402 DFQHSNLKQM 411

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 46  TIDFSNNDIRKIDGFPL----LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101
            +D S N +               L  L  + N ++ ++ N    L  LE L    +N++
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLK 409

Query: 102 ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
           ++ +     +L  L  L + H       +        L  +++L  +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMA 453

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 29/131 (22%)

Query: 22  RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV 77
             LDL                       +D S N +  +   F  L++L  L F ++ + 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 78  RIAE--------NLQ-----------------ENLPNLETLILTGNNIQELGDLDPLSTL 112
           +++E        NL                    L +LE L + GN+ QE    D  + L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 113 PKLKTLCLLHN 123
             L  L L   
Sbjct: 470 RNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 22  RELDLRGYKI--PVIENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
             L + G       + ++   L     +D S   + ++    F  L  L  L  ++N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPK-LKTLCLLHNP 124
            +     + L +L+ L  + N+I        L   P  L  L L  N 
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 22  RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
           + LDL   +I  IE+    +L    T+  + N I+ +    F  L  L  L      +  
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 79  IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           +      +L  L+ L +  N IQ     +  S L  L+ L L  N
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 46  TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAE-NLQENLPNLETLILTGNNIQE 102
            +     ++  ++ FP+  LK L  L   +N I          NL NLE L L+ N IQ 
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 103 L--GDLDPLSTLPKLK-TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
           +   DL  L  +P L  +L L  NP+          AFK  ++  L   
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG----AFKEIRLHKLTLR 208

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 6/104 (5%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           + L+L   K      +   L     + F++N          L  L  L  + N +     
Sbjct: 307 QHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 82  --NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
                    +L+ L L+ N +  +        L +L+ L   H+
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 46  TIDFSNNDIRKIDGFP--LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
           T      +  KI   P  L      L  + N +  +      + P L+ L L+   IQ +
Sbjct: 11  TYQCMELNFYKI---PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
            D     +L  L TL L  NP+ +        AF  L  ++ L   +  L +L N   G
Sbjct: 68  EDGA-YQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIG 121

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 16/115 (13%)

Query: 22  RELDLRGYKI--PVIENMGATLDQFDTIDFSNNDIRK--------IDGFPLLKRLSCLFF 71
            +L LR       V++     L   +       + R               L  L+   F
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 72  NNNRIVRIAENLQE---NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
               +    +++ +    L N+ +  L    I+    +   S     + L L++ 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNC 314

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 45  DTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE 102
             I    N I+ I    F   K+L  +  +NN+I  +A +  + L +L +L+L GN I E
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 103 L--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKALMNVM 159
           L     +    L  L+ L L  N +          AF  L  + LL     KL+ +    
Sbjct: 95  LPKSLFEG---LFSLQLLLLNANKINCLRVD----AFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 160 F 160
           F
Sbjct: 148 F 148

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
           R +DL   +I  +    A   L   +++    N I ++    F  L  L  L  N N+I 
Sbjct: 59  RRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
            +  +  ++L NL  L L  N +Q +      S L  ++T+ L  NP
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNP 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 27/134 (20%)

Query: 18  PVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-DG-FPLLKRLSCLFFNN 73
           P    EL L   +  V+E  G    L Q   I+FSNN I  I +G F     ++ +   +
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 74  NRIVRIAENLQENLPNLETLILTGNNIQE--------LGDLDPLS--------------- 110
           NR+  +   + + L +L+TL+L  N I          L  +  LS               
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 111 TLPKLKTLCLLHNP 124
           TL  L TL LL NP
Sbjct: 151 TLHSLSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 13/122 (10%)

Query: 45  DTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101
             +  +NN+   +     F  L +L  + F+NN+I  I E   E    +  ++LT N ++
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 102 EL--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKALMNV 158
            +          L  LKTL L  N +    +     +F  L  V+LL     ++  +   
Sbjct: 95  NVQHKMFKG---LESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQITTVAPG 147

Query: 159 MF 160
            F
Sbjct: 148 AF 149

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
             +      +  + ++  +L+   +I   NN + ++     L  L+ ++ +NN +    +
Sbjct: 198 TAIYADNNSLKKLPDLPLSLE---SIVAGNNILEELPELQNLPFLTTIYADNNLL----K 250

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
            L +  P+LE L +  N + +L +L        L  L +  N                P 
Sbjct: 251 TLPDLPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGLSEL-------PPN 298

Query: 142 VKLLDFSKVKLKAL 155
           +  L+ S  ++++L
Sbjct: 299 LYYLNASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 17/134 (12%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           + +D+    +  + +        + I   NN + ++     L  L+ ++ +NN +    +
Sbjct: 156 KIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL----K 208

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
            L +   +LE+++   N ++E   L  L  LP L T+   +N +   P          P 
Sbjct: 209 KLPDLPLSLESIVAGNNILEE---LPELQNLPFLTTIYADNNLLKTLPD-------LPPS 258

Query: 142 VKLLDFSKVKLKAL 155
           ++ L+     L  L
Sbjct: 259 LEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
            +  SNN + K+        L  +  +NN +    + L +  P+LE +    N ++E   
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSL----KKLPDLPPSLEFIAAGNNQLEE--- 187

Query: 106 LDPLSTLPKLKTLCLLHN 123
           L  L  LP L  +   +N
Sbjct: 188 LPELQNLPFLTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 21/135 (15%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA 80
            EL+L    +  +          +++  S N + ++ +    LK L     N        
Sbjct: 74  HELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA----- 125

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
             L +  P LE L ++ N +++   L  L     LK + + +N +   P          P
Sbjct: 126 --LSDLPPLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSLKKLPD-------LPP 173

Query: 141 QVKLLDFSKVKLKAL 155
            ++ +     +L+ L
Sbjct: 174 SLEFIAAGNNQLEEL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
            +D S N    +   P    L  L  ++N I     +L +  P+LE L ++ N + EL  
Sbjct: 281 FLDVSENIFSGLSELP--PNLYYLNASSNEI----RSLCDLPPSLEELNVSNNKLIEL-- 332

Query: 106 LDPLSTLPKLKTLCLLHN 123
             P +  P+L+ L    N
Sbjct: 333 --P-ALPPRLERLIASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
            ++ S+N+IR +    L   L  L  +NN++      L    P LE LI + N++ E+ +
Sbjct: 301 YLNASSNEIRSL--CDLPPSLEELNVSNNKL----IELPALPPRLERLIASFNHLAEVPE 354

Query: 106 LDPLSTLPKLKTLCLLHNP 124
           L        LK L + +NP
Sbjct: 355 L-----PQNLKQLHVEYNP 368

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
            +    N +R+     + + +  L  N++        + E   NL+ L +  N ++E  D
Sbjct: 361 QLHVEYNPLREFP--DIPESVEDLRMNSHL-----AEVPELPQNLKQLHVETNPLREFPD 413

Query: 106 LDPLSTLPKLKTLCLLHNPVINRP 129
           +        ++ L +    V++  
Sbjct: 414 I-----PESVEDLRMNSERVVDPY 432

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
            +    N +R+     + + +  L  N+ R+V   E   E    LE  +   ++ 
Sbjct: 400 QLHVETNPLREFP--DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 12/166 (7%)

Query: 2   VKLTADLIVQCMQYTNPVKDRELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKID 58
            ++ + ++   ++       +EL L             + AT    + ++  N      D
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 59  GFP------LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ---ELGDLDPL 109
            +       L   L  L       +  +       P L TL L+ N       L      
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 110 STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
              P L+ L L +  +         +A    Q++ LD S   L+  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 10/112 (8%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG---------FPLLKRLSCLFF 71
           + L +                    T+D S+N      G         FP L+ L+    
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 72  NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
                  +   L      L+ L L+ N++++           +L +L L   
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 48  DFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
           D S+N +R            +L+ L  +   + ++ + L      L  L L+ N +    
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---PAKLSVLDLSYNRLDR-- 288

Query: 105 DLDPLSTLPKLKTLCLLHNP 124
                  LP++  L L  NP
Sbjct: 289 -NPSPDELPQVGNLSLKGNP 307

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIVRIA 80
            +L+L   ++  ++ +  TL    T+D S+N ++ +      L  L+ L  + NR+  + 
Sbjct: 58  TQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 81  ENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF- 137
                 L  L+ L L GN ++ L  G L P    PKL+ L L +N +   P         
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTP---TPKLEKLSLANNNLTELPAG----LLN 169

Query: 138 KLPQVKLLDFSKVKLKALMNVMFG----TEIILSG 168
            L  +  L   +  L  +    FG        L G
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 18  PVKDRELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRI 76
           P     L L    +            +   ++    ++ K+     L  L  L  ++N++
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 77  VRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHN 123
             +    Q  LP L  L ++ N +  L  G L     L +L+ L L  N
Sbjct: 90  QSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRG---LGELQELYLKGN 134

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 69  LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR 128
           L  + N +   +         L  L L    + +L        LP L TL L HN + + 
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT---LPVLGTLDLSHNQLQSL 92

Query: 129 PHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
           P     +    LP + +LD S  +L +L
Sbjct: 93  P-----LLGQTLPALTVLDVSFNRLTSL 115

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 48  DFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
           D S N +R +    F     L  L  +   I  I +   ++L +L TLILTGN IQ L  
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-A 92

Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
           L   S L  L+ L  +   + +  +   +    L  +K L+ +   +++ 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSF 139

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
           + LDL   +I  IE+ GA  +L    T+  + N I+ +    F  L  L  L      + 
Sbjct: 55  QVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 78  RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            +      +L  L+ L +  N IQ     +  S L  L+ L L  N
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVR 78
             L L G  I  +     + L     +     ++  ++ FP+  LK L  L   +N I  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 79  IAE-NLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLK-TLCLLHNPVINRPHYRLY 134
                   NL NLE L L+ N IQ +   DL  L  +P L  +L L  NP+         
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--- 195

Query: 135 VAFKLPQVKLLDFSKVKLKALMNVMF 160
            AFK  ++K L     +LK++ + +F
Sbjct: 196 -AFKEIRLKELALDTNQLKSVPDGIF 220

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 16  TNPVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-----DGFPLLKRLSC 68
            +    +EL++    I   +       L   + +D S+N I+ I          +  L+ 
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 69  -LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
            L  + N +  I     + +  L+ L L  N ++ + D      L  L+ + L  NP
Sbjct: 181 SLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 69  LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR 128
           L  + N +  +      + P L+ L L+   IQ + +     +L  L TL L  NP+ + 
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSL 91

Query: 129 PHYRLYVAF-KLPQVKLLDFSKVKLKALMNVMFG 161
                  AF  L  ++ L   +  L +L N   G
Sbjct: 92  AL----GAFSGLSSLQKLVAVETNLASLENFPIG 121

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 46  TIDFSNNDIRK-IDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
            ++   N +   +  F    +L+ L    N+I  I  N       +E L    N ++ + 
Sbjct: 334 MLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393

Query: 105 DLDPLSTLPKLKTLCLLHNP 124
           ++    ++  +  +   +N 
Sbjct: 394 NIFDAKSVSVMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQE-------NLPNLETLILT 96
           +I+ SNN I K   + F     LS +    N +  I +N  +       N   L ++ L 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 97  GNNIQELGDLDPLSTLPKLKTLCLLHN 123
            N + +L D    +TLP L  + L +N
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYN 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 17/115 (14%)

Query: 22  RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI---------DGFPLLKRLSCLFF 71
             ++L   +I    + + +T     +I+   N + +I         + F     L+ +  
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 72  NNNRIVRIAENLQE-NLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
             N++ +++++ +   LP L  + L+ N+  +     P        LK   + + 
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF----PTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 46  TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV---RIAENLQE---NLPNLETLILTGN 98
            ID S N   K          L      N R     R      E     P+L  L +  N
Sbjct: 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 99  NIQELGDLDPLSTLPKLKTLCLLHNP 124
           +I+++         P +  L +  NP
Sbjct: 577 DIRKV----NEKITPNISVLDIKDNP 598

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 22  RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL---------LKRLSCL 69
             L         IP I +   ++     IDFS N+I  +DG               +S +
Sbjct: 380 ENLSFAHNKLKYIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 70  FFNNNRIVRIAENLQENLPNLETLILTGNNIQEL------GDLDPLSTLPKLKTLCLLHN 123
             +NN+I +  + L      L ++ L GN + E+       + +       L ++ L  N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 33  VIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVRIAENLQENLP- 88
           +  N     +Q + + F++N ++ I        +  +S + F+ N I  +     + L  
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 89  ------NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
                 N+ ++ L+ N I +    +  ST   L ++ L+ N
Sbjct: 428 TPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGN 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 49  FSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQE--------NLPNLETLILTGNN 99
           ++  ++ K+      L  +  +    NR +   +   +            ++ + +  NN
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 100 IQELGDLDPLSTLPKLKTLCLLHN 123
           ++       L  + KL  L  L+N
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYN 340

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 43  QFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQ-ENLPNLETLILTGNNIQ 101
           +  + +   +D + +   P+ +++  ++   N +         + +  L  L    N ++
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 102 ELGDLDPLSTLPKLKTLCLLHN 123
               L    +  KL +L L +N
Sbjct: 344 GK--LPAFGSEIKLASLNLAYN 363

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 16/161 (9%)

Query: 48  DFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
           + S N I ++       L +L  L  ++NRI  +  ++ +    LE L L+ N + ++  
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-- 84

Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFS-----KVKLKALMNVM 159
                    LK L L  N     P  +    F  + Q+K L  S     K  +  + ++ 
Sbjct: 85  --SCHPTVNLKHLDLSFNAFDALPICKE---FGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 160 FGTEIILSGDSIDAGDQALFIMNHRT-RLDWNFLWGCMFHA 199
               +++ G++    +    + +  T  L   F     FH 
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 22/137 (16%)

Query: 41  LDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQ--ENLPNLETLILT 96
           +  F  +DFSNN +     +    L  L  L    N++  +++  +    + +L+ L ++
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 97  GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYV------------------AFK 138
            N++         S    L +L +  N + +     L                      K
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK 442

Query: 139 LPQVKLLDFSKVKLKAL 155
           L  ++ L+ +  +LK++
Sbjct: 443 LEALQELNVASNQLKSV 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 40  TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99
           +         S   +  +     +     L F+NN +         +L  LETLIL  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 100 IQELGDL-DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
           ++EL  + +  + +  L+ L +  N V                +  L+ S   L   
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS--WTKSLLSLNMSSNILTDT 414

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 22  RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
           ++LD+    +   E  G         +++ S+N +       L  R+  L  ++N+I  I
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI 436

Query: 80  AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
            + +   L  L+ L +  N ++ + D      L  L+ + L  NP
Sbjct: 437 PKQV-VKLEALQELNVASNQLKSVPD-GIFDRLTSLQKIWLHTNP 479

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 45  DTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
                  + + +I    P  +    L F   ++  I +       +LE + ++ N++ E+
Sbjct: 12  RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMF 160
            + D  S LPKL  + +     +   +     AF+ LP ++ L  S   +K L +V  
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPE---AFQNLPNLQYLLISNTGIKHLPDVHK 124

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 46  TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            +  + N I++I    F   +       +NN +  +  ++         L ++   I  L
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

Query: 104 GDLDPLSTLPKLKTLCLLHN 123
                L  L KL+     + 
Sbjct: 218 PS-YGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFS-NNDIRKIDGFP---LLKRLSCLFFNNNRI 76
           + L +    I  + +       Q   +D   N +I  I+      L      L+ N N I
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 77  VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
             I  +        E  +   NN++EL + D          L +    + + P Y L   
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSYGLE-- 223

Query: 137 FKLPQVKLLD 146
             L +++   
Sbjct: 224 -NLKKLRARS 232

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 12/109 (11%)

Query: 46  TIDFSN-NDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN-IQ 101
            I     N++  I  + F  L  L  L  +N  I  + +  + +      L +  N  I 
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 102 EL--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
            +       LS   +   L L  N +    +     AF   Q+  L+ S
Sbjct: 143 TIERNSFVGLS--FESVILWLNKNGIQEIHNS----AFNGTQLDELNLS 185

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 18  PVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-DG-FPLLKRLSCLFFNN 73
           P+   EL L   ++  I + G    L     ++   N +  I    F     +  L    
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 74  NRIVRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNP 124
           N+I  I+  +   L  L+TL L  N I  +  G  +    L  L +L L  NP
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLASNP 137

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 48  DFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
             S N I ++       L  L  L  ++NRI  +  ++     +LE L ++ N +Q +  
Sbjct: 58  SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-- 115

Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
                 +  L+ L L  N     P   +   F  L ++  L  S  K + L
Sbjct: 116 --SCCPMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQL 161

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 18  PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DG-FPLLKRLSCLFFNNNR 75
           P    EL L G +  ++    +       ID SNN I  + +  F  + +L  L  + NR
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 76  IVRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNP 124
           +  I     + L +L  L L GN+I  +  G  + LS    L  L +  NP
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS---ALSHLAIGANP 137

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
           +EL + G ++    ++     +   +  S N +  +    L   L  L    N++ R+ E
Sbjct: 224 KELIVSGNRL---TSLPVLPSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRLPE 278

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY 131
           +L  +L +  T+ L GN + E      L  L ++ +      P+I     
Sbjct: 279 SL-IHLSSETTVNLEGNPLSER----TLQALREITSAPGYSGPIIRFDMA 323

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 13/109 (11%)

Query: 17  NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFP--LLKRLSCLFFNNN 74
                 E   R   +  +       +    ++   + +  +   P  L   ++ L   +N
Sbjct: 17  RAAPAEESRGRAAVVQKMRA--CLNNGNAVLNVGESGLTTL---PDCLPAHITTLVIPDN 71

Query: 75  RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            +     +L    P L TL ++GN +  L  L     L +L        
Sbjct: 72  NL----TSLPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLT 114

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 34/166 (20%)

Query: 7   DLIVQCMQYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKR 65
             +VQ M+      +  L++    +  + + + A +    T+   +N++  +    L   
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHIT---TLVIPDNNLTSLP--ALPPE 82

Query: 66  LSCLFFNNNRIVRIAE----------------NLQENLPNLETLILTGNNIQELGDLDPL 109
           L  L  + N++  +                  +L      L  L + GN +  L  L   
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL--- 139

Query: 110 STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
              P L+ L +  N + + P           ++  L     +L +L
Sbjct: 140 --PPGLQELSVSDNQLASLPAL-------PSELCKLWAYNNQLTSL 176

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA 80
            +L + G ++  +            +  S+N +  +      L +L      NN++    
Sbjct: 124 CKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAY---NNQL---- 173

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
            +L      L+ L ++ N +  L  L       +L  L   +N
Sbjct: 174 TSLPMLPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNN 211

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 46  TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
            +  S+N +  +      L +L      NNR+     +L      L+ LI++GN +  L 
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWAY---NNRL----TSLPALPSGLKELIVSGNRLTSLP 237

Query: 105 DLDPLSTLPKLKTLCLLHN 123
            L       +LK L +  N
Sbjct: 238 VL-----PSELKELMVSGN 251

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 22/135 (16%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
            EL L    +  + +N+   +     ++ + N +  +    L   L  L   +NR+    
Sbjct: 62  SELQLNRLNLSSLPDNLPPQIT---VLEITQNALISLP--ELPASLEYLDACDNRL---- 112

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
             L E   +L+ L +  N +  L +L        L+ +   +N +   P           
Sbjct: 113 STLPELPASLKHLDVDNNQLTMLPEL-----PALLEYINADNNQLTMLPE-------LPT 160

Query: 141 QVKLLDFSKVKLKAL 155
            +++L     +L  L
Sbjct: 161 SLEVLSVRNNQLTFL 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 13/77 (16%)

Query: 48  DFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
           D  NN +  + +   LL+ ++    +NN++  + E       +LE L +  N +  L +L
Sbjct: 126 DVDNNQLTMLPELPALLEYINA---DNNQLTMLPELPT----SLEVLSVRNNQLTFLPEL 178

Query: 107 DPLSTLPKLKTLCLLHN 123
                   L+ L +  N
Sbjct: 179 -----PESLEALDVSTN 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 46  TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
            ++  +  + +  D    L  L  +  +   ++ + + + +    LETL L  N ++ L 
Sbjct: 85  ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRAL- 142

Query: 105 DLDP--LSTLPKLKTLCLLHNPVINR-PH-----YRLYVAFKLPQVKLLDFSKVKLKAL 155
              P  +++L +L+ L +   P +   P              L  ++ L      +++L
Sbjct: 143 ---PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)

Query: 22  RELDLRGY----KIP-VIENMGATLDQFD-----TIDFSNNDIRKI-DGFPLLKRLSCLF 70
           REL +R      ++P  + +  A+ +        ++      IR +      L+ L  L 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212

Query: 71  FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL-DPLSTLPKLKTLCLLHN 123
             N+ +  +   +  +LP LE L L G     L +          LK L L   
Sbjct: 213 IRNSPLSALGPAI-HHLPKLEELDLRGCT--ALRNYPPIFGGRAPLKRLILKDC 263

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 16  TNPVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFF 71
              V   EL L   ++  +       +L +   +    N+++ +    F  L  L  L  
Sbjct: 106 DQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164

Query: 72  NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
            NN++ R+ E   + L  L+TL L  N ++ + +     +L KLK L L  NP
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 22  RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
             L +   K+  +   +   L     +    N ++ +    F  L +L+ L    N +  
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147

Query: 79  IAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNPVINRPH 130
           + + + + L +L+ L L  N ++ +  G  D L+   +LKTL L +N +   P 
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT---ELKTLKLDNNQLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 18  PVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNN 73
           P   ++LDL+  K+  + +  A   L +   +  ++N ++ +    F  LK L  L+  +
Sbjct: 36  PADTKKLDLQSNKLSSLPS-KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 74  NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
           N++  +   + + L NL  L L  N ++ L       +L KL  L L +N
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYN 143

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 39/228 (17%), Positives = 68/228 (29%), Gaps = 40/228 (17%)

Query: 22  RELDLRGYKI------PVIENMGATLDQFDTIDFSNNDIRKIDGFPL------LKRLSCL 69
           REL L   K+       +   +     +  T+      I       L       + L  L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 70  FFNNNRI-----VRIAENLQENLPNLETLILTGNNI-----QELGDLDPLSTLPKLKTLC 119
               N +       + E L E    LE+L +   +           +  L+    L  L 
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV--LAQNRFLLELQ 347

Query: 120 LLHNPVINRPHYRLYVAFKLPQVKL--LDFSKVKL---------KALMNVMFGTEIILSG 168
           + +N + +     L      P   L  L  +   +           L+      E+ LS 
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 169 DSI-DAGDQALF--IMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKS 213
           + + DAG   L   +      L+   L+   +  S     RL+ + K 
Sbjct: 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYW--SEEMEDRLQALEKD 453

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 44/215 (20%)

Query: 22  RELDLRGYKI---------PVIENMGATLDQFDTIDFSNNDIRKI------DGFPLLKRL 66
            EL+LR  ++           ++     +     +   N  +              L  L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQ---KLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 67  SCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNI-----QELGDLDPLSTLPKLK 116
             L  ++N +       + E L +    LE L L   ++     + L  +  L   P  K
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV--LRAKPDFK 173

Query: 117 TLCLLHNPVINRPHYRLYVAFKLPQVKL--LDFSKVKL---------KALMNVMFGTEII 165
            L + +N +       L    K    +L  L      +           + +     E+ 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 166 LSGDSI-DAGDQAL--FIMNHRTRLDWNFLWGCMF 197
           L  + + D G   L   +++  +RL   ++W C  
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 46  TIDFSNNDIR-KIDGFPLLKRLSCLFFNNNRIV-RIAENLQ-ENLPNLETLILTGNNIQE 102
           ++  SN+ I   + GF     L+ L  + N +   +       +   L+ L ++ N +  
Sbjct: 81  SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140

Query: 103 LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
            G +     L  L+ L L  N +         ++    ++K L  S
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 46  TIDFSNNDIR-KIDGFPLLKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNIQEL 103
            +D S+N+    I        L  L  + N++    +  +      L+ L ++ N     
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFV-- 260

Query: 104 GDLDPLSTLPKLKTLCLLHN 123
           G + P   L  L+ L L  N
Sbjct: 261 GPI-PPLPLKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 46  TIDFSNNDIRKIDG-FP--LLKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNIQ 101
            ++ S+N   +  G  P   LK L  L    N+    I + L      L  L L+GN+  
Sbjct: 251 LLNISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 102 ELGDLDP-LSTLPKLKTLCLLHN 123
             G + P   +   L++L L  N
Sbjct: 308 --GAVPPFFGSCSLLESLALSSN 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	435
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.62
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.62
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.6
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.59
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.56
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.55
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.53
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.5
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.49
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.49
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.38
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.94
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.56
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.55
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.92
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.13
1iuq_A	367	Glycerol-3-phosphate acyltransferase; open twisted	96.33
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	82.39

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.89  E-value=4e-23  Score=181.45  Aligned_cols=155  Identities=69%  Similarity=1.116  Sum_probs=143.4

Q ss_pred             CccccHHHHhcccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc
Q psy18204          1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA   80 (435)
Q Consensus         1 ~~~lt~~~i~~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~   80 (435)
                      ||++|.+++...+++.++.+|+.|++++|.++.++......++|+.|++++|.|++++.++.+++|++|++++|+|+.++
T Consensus         1 m~~lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~   80 (176)
T 1a9n_A            1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG   80 (176)
T ss_dssp             -CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred             CccccHHHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence            89999999999999999999999999999999998766555699999999999999988999999999999999999998


Q ss_pred             chhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      +.+++.+++|++|+|++|+|+.++.+..+..+++|+.|++++|+++.++.++..++..+++|+.||++.|.+...
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            888889999999999999999888655788999999999999999999988777889999999999999998764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=2.1e-18  Score=149.83  Aligned_cols=140  Identities=32%  Similarity=0.419  Sum_probs=126.3

Q ss_pred             cCCCCcceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         15 YTNPVKDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      ...+++|+.|++++|.++  .+|..+..+++|+.|++++|.|+.++.+..+++|+.|++++|+++...+..+..+++|++
T Consensus        20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            345689999999999998  899888889999999999999999988999999999999999999855666678999999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      |+|++|.|+.++.+..+..+++|+.|++++|+++.++.++...+..+++|+.|++++|.+..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999999998754588999999999999999999988766678999999999999998763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=5.7e-18  Score=160.69  Aligned_cols=157  Identities=17%  Similarity=0.167  Sum_probs=115.3

Q ss_pred             CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      ++++.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++....+++|+.|++++|+|+.+|..+ ..+++|++|+|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT-TTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhh-ccCCCCCEEECCC
Confidence            57788888888887654 556778888888888888887776677788888888888888776644 6788888888888


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID  172 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~  172 (435)
                      |+|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|+++.+...     .....+.+++|.+.
T Consensus       110 N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCcccCH-HHHcCCCCCCEEECCCCCCCccChh---hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            88887764 3677788888888888888877654   346678888888888887765432     23377888888776


Q ss_pred             ccccceee
Q psy18204        173 AGDQALFI  180 (435)
Q Consensus       173 ~~~~~~~i  180 (435)
                      ..+..++.
T Consensus       186 ~ip~~~~~  193 (290)
T 1p9a_G          186 TIPKGFFG  193 (290)
T ss_dssp             CCCTTTTT
T ss_pred             ccChhhcc
Confidence            55444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.4e-17  Score=156.12  Aligned_cols=175  Identities=21%  Similarity=0.253  Sum_probs=138.4

Q ss_pred             CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      .+++.|++++|.++.++. .+..+++|+.|+|++|.|+.++  .|..+++|++|++++|+++.+++..+..+++|++|+|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            578999999999998874 6788999999999999999886  3688999999999999999998888889999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCC
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDS  170 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~  170 (435)
                      ++|+++.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.++.+...     .....+++++|.
T Consensus       117 ~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          117 DRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccCeeCH-HHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            9999988875 4678899999999999999988764   357889999999999988765432     344789999988


Q ss_pred             CcccccceeecCCccccccchhchhhhhc
Q psy18204        171 IDAGDQALFIMNHRTRLDWNFLWGCMFHA  199 (435)
Q Consensus       171 i~~~~~~~~i~nh~~~lD~l~l~~~~~~~  199 (435)
                      +.......  ......+..+.+.++++..
T Consensus       193 l~~~~~~~--~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          193 LKRVPEGA--FDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CSCCCTTT--TTTCTTCCEEECCSSCBCC
T ss_pred             CCcCCHHH--hccccCCCEEEecCCCeeC
Confidence            77544322  2233444445555555433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=5.7e-18  Score=144.08  Aligned_cols=134  Identities=31%  Similarity=0.445  Sum_probs=119.2

Q ss_pred             CCCCcceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         16 TNPVKDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      ..+++++.|++++|.++  .+|..+..+++|+.|++++|.++.++.++.+++|+.|++++|.|+...+..++.+++|++|
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34578999999999998  8998888999999999999999999889999999999999999998445565789999999


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecc
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK  149 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~  149 (435)
                      ++++|++++++....+..+++|+.|++++|+++.++.++...+..+++|+.||+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999875334788999999999999999999886666789999999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=1.9e-17  Score=153.65  Aligned_cols=150  Identities=23%  Similarity=0.324  Sum_probs=98.2

Q ss_pred             CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ++++.|+|++|.++.++ ..+..+++|+.|+|++|.|+.++  .|..+++|+.|++++|+|+.+++..+..+++|++|+|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            45677777777776554 34666777777777777777664  3667777777777777777776666667777777777


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccEEEEecCC
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTEIILSGDS  170 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~l~lsgn~  170 (435)
                      ++|+|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|+++.+..     ......+.+++|.
T Consensus       115 ~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          115 GGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            7777776664 2456677777777777777766553   24566777777777777654432     1223555555555


Q ss_pred             Cc
Q psy18204        171 ID  172 (435)
Q Consensus       171 i~  172 (435)
                      +.
T Consensus       191 ~~  192 (251)
T 3m19_A          191 FD  192 (251)
T ss_dssp             BC
T ss_pred             ee
Confidence            43

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=2.3e-17  Score=154.98  Aligned_cols=152  Identities=22%  Similarity=0.315  Sum_probs=84.8

Q ss_pred             CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      ++.+|+.|++++|.+..++.. ..+++|+.|++++|.+++++.+..+++|++|++++|.++.+++..++.+++|++|+|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGI-QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTG-GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccceeeeeeCCCCccccccc-ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            345566666666666555432 3455666666666666655555556666666666666666555555556666666666


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccEEEEecCCC
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTEIILSGDSI  171 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~l~lsgn~i  171 (435)
                      +|+++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.|++++|+++.+..     ......+.+++|.+
T Consensus       118 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          118 ENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             TSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCCccCH-HHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            666655543 2355566666666666666555442   23455666666666665544322     12235556666555


Q ss_pred             cc
Q psy18204        172 DA  173 (435)
Q Consensus       172 ~~  173 (435)
                      ..
T Consensus       194 ~~  195 (272)
T 3rfs_A          194 KS  195 (272)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=3.3e-17  Score=153.61  Aligned_cols=150  Identities=23%  Similarity=0.294  Sum_probs=110.2

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      +.+.++++++.++.+|..+  .++++.|+|++|.|+.++  .|..+++|++|++++|.|+.+++..|..+++|++|+|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4677888888888777544  257888888888887775  477788888888888888888777777788888888888


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID  172 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~  172 (435)
                      |+++.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.++.+...     .....+.+++|.+.
T Consensus        95 n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           95 NKLQALPI-GVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             SCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcCCH-hHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            88877765 3667788888888888888776653   346778888888888877654332     33477788777766


Q ss_pred             ccc
Q psy18204        173 AGD  175 (435)
Q Consensus       173 ~~~  175 (435)
                      ...
T Consensus       171 ~~~  173 (270)
T 2o6q_A          171 RVP  173 (270)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=2.6e-17  Score=149.63  Aligned_cols=131  Identities=25%  Similarity=0.334  Sum_probs=81.8

Q ss_pred             CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ++++.|+|++|.|+.++. .+..+++|+.|+|++|.|+.+.  .|..+++|+.|+|++|+|+.+++..|..+++|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            356666666666665553 4555666666666666666652  4666666666666666666666666666666666666


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      ++|+|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.+.
T Consensus       112 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCCcC
Confidence            6666666553 3566666666666666666665543   2345666666666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=4e-17  Score=151.38  Aligned_cols=137  Identities=20%  Similarity=0.323  Sum_probs=123.8

Q ss_pred             ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      .+.++++|++|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..+..+++|
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  133 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL  133 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence            5778999999999999999776 55788999999999999999986  57899999999999999999999888999999


Q ss_pred             CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204         91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      ++|+|++|+|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|++..
T Consensus       134 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          134 KELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCBCT
T ss_pred             cEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCceeC
Confidence            999999999999886 4788999999999999999988764   45789999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=2e-17  Score=155.41  Aligned_cols=157  Identities=24%  Similarity=0.243  Sum_probs=134.9

Q ss_pred             cccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         11 QCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        11 ~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      ....+.++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++  .+..+++|++|++++|+++.+++..++.++
T Consensus        55 ~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  133 (272)
T 3rfs_A           55 SVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT  133 (272)
T ss_dssp             CCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence            3445778899999999999999876 4567999999999999999987  389999999999999999999988889999


Q ss_pred             CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccE
Q psy18204         89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTE  163 (435)
Q Consensus        89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~  163 (435)
                      +|++|+|++|+++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.|++++|+++.+...     .....
T Consensus       134 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (272)
T 3rfs_A          134 NLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEG---VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  209 (272)
T ss_dssp             TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHH---HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence            99999999999998876 3678999999999999999988764   357899999999999998865432     23477


Q ss_pred             EEEecCCCc
Q psy18204        164 IILSGDSID  172 (435)
Q Consensus       164 l~lsgn~i~  172 (435)
                      +.+++|.+.
T Consensus       210 L~l~~N~~~  218 (272)
T 3rfs_A          210 IWLHDNPWD  218 (272)
T ss_dssp             EECCSSCBC
T ss_pred             EEccCCCcc
Confidence            888887665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=4.4e-17  Score=149.07  Aligned_cols=126  Identities=21%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             eEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204         22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN   99 (435)
Q Consensus        22 ~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (435)
                      +.++.+++.++.+|..+  .++|+.|+|++|.|+.+.  .|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|+
T Consensus        22 ~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            44455555555444322  244555555555554442  24445555555555555555544444455555555555555


Q ss_pred             CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204        100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus       100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      |+.++. ..+..+++|+.|+|++|.++.+|..    +..+++|+.|++++|+++.
T Consensus       100 l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~~----~~~l~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A          100 LTVLPS-AVFDRLVHLKELFMCCNKLTELPRG----IERLTHLTHLALDQNQLKS  149 (229)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECCSSCCCSCCTT----GGGCTTCSEEECCSSCCCC
T ss_pred             CCccCh-hHhCcchhhCeEeccCCcccccCcc----cccCCCCCEEECCCCcCCc
Confidence            544443 2344455555555555555544432    2444555555555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=3.4e-17  Score=155.31  Aligned_cols=152  Identities=18%  Similarity=0.164  Sum_probs=93.8

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      .+.++++++++++++|.++.+|..+  .++++.|+|++|.|+.++  .|..+++|+.|++++|.|+.++..  +.+++|+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             cccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            3455666666777766666666443  246666777777666653  466666677777777776666443  4666677


Q ss_pred             eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEE
Q psy18204         92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIIL  166 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~l  166 (435)
                      +|+|++|+|+.++.  .+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|+++.+...     .....+.+
T Consensus        81 ~L~Ls~N~l~~l~~--~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             EEECCSSCCSSCCC--CTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCcCch--hhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            77777776666654  556666677777777766666543   345666677777776666554322     22356666


Q ss_pred             ecCCCccc
Q psy18204        167 SGDSIDAG  174 (435)
Q Consensus       167 sgn~i~~~  174 (435)
                      ++|.+...
T Consensus       156 ~~N~l~~l  163 (290)
T 1p9a_G          156 ANNNLTEL  163 (290)
T ss_dssp             TTSCCSCC
T ss_pred             CCCcCCcc
Confidence            66666533

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.71  E-value=5.4e-17  Score=153.27  Aligned_cols=151  Identities=20%  Similarity=0.241  Sum_probs=83.6

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCc-cccccchhhcCCCCCCee
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNR-IVRIAENLQENLPNLETL   93 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~-i~~i~~~~~~~l~~L~~L   93 (435)
                      +++++.|++++|.++.++ ..+..+++|+.|++++|.++.+.  .|..+++|++|++++|. ++.+++..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            345666666666666554 34555666666666666665552  45556666666666665 555544444556666666


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccEEEEec
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTEIILSG  168 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~l~lsg  168 (435)
                      ++++|.++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.|++++|+++.+..     ......+.+++
T Consensus       111 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          111 HLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             ECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence            666666655543 2455566666666666666555432   23455566666666665544322     12235555555


Q ss_pred             CCCc
Q psy18204        169 DSID  172 (435)
Q Consensus       169 n~i~  172 (435)
                      |.+.
T Consensus       187 n~l~  190 (285)
T 1ozn_A          187 NRVA  190 (285)
T ss_dssp             SCCC
T ss_pred             Cccc
Confidence            5554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=1.2e-16  Score=145.14  Aligned_cols=130  Identities=25%  Similarity=0.374  Sum_probs=85.0

Q ss_pred             cceEEEecCCCccccc--ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         20 KDRELDLRGYKIPVIE--NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~--~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      .+++|+|++|.|+.++  ..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|.|+.+++..|..+++|++|+|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            4566777777776553  33556667777777777776664  4666777777777777777766666666777777777


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      ++|+|+.+.+ ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.+.
T Consensus       113 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          113 RSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECCSCCEE
T ss_pred             CCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEecCcCCc
Confidence            7777766643 3566667777777777777665332   3456667777777766654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=1.2e-16  Score=150.87  Aligned_cols=158  Identities=22%  Similarity=0.246  Sum_probs=133.8

Q ss_pred             ccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCC-CCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNND-IRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN   89 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~   89 (435)
                      .|.++++|+.|++++|.++.+ +..+..+++|+.|++++|. ++.++  .+..+++|++|++++|.++.+++..+..+++
T Consensus        51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  130 (285)
T 1ozn_A           51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA  130 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence            578889999999999999977 5678889999999999997 88874  6889999999999999999988777789999


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----hhhcccEE
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEI  164 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l  164 (435)
                      |++|++++|+++.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.++.+.     .......+
T Consensus       131 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          131 LQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPER---AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             CCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCHH---HhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence            9999999999998875 3688899999999999999987764   3577899999999999887652     22345889


Q ss_pred             EEecCCCcccc
Q psy18204        165 ILSGDSIDAGD  175 (435)
Q Consensus       165 ~lsgn~i~~~~  175 (435)
                      ++++|.+....
T Consensus       207 ~l~~n~l~~~~  217 (285)
T 1ozn_A          207 YLFANNLSALP  217 (285)
T ss_dssp             ECCSSCCSCCC
T ss_pred             eCCCCcCCcCC
Confidence            99999887544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=1.5e-16  Score=149.49  Aligned_cols=166  Identities=22%  Similarity=0.304  Sum_probs=134.3

Q ss_pred             CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ++++.|++++|.++.++. .+..+++|+.|++++|.++.++  .|..+++|++|++++|+++.+++..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            479999999999998874 6788999999999999999886  5899999999999999999998877799999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHhh-----hhccc----EE
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGT----EI  164 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~----~l  164 (435)
                      ++|+++.++.. .+..+++|+.|++++|.++.  +|.    .+..+++|+.|++++|+++.+..     .....    .+
T Consensus       108 ~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          108 VETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             TTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             CCCCccccCch-hcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            99999988763 68899999999999999987  344    36789999999999998865422     22222    78


Q ss_pred             EEecCCCcccccceeecCCcccccc
Q psy18204        165 ILSGDSIDAGDQALFIMNHRTRLDW  189 (435)
Q Consensus       165 ~lsgn~i~~~~~~~~i~nh~~~lD~  189 (435)
                      ++++|.+.......+...++..+|.
T Consensus       183 ~ls~n~l~~~~~~~~~~~~L~~L~L  207 (276)
T 2z62_A          183 DLSLNPMNFIQPGAFKEIRLKELAL  207 (276)
T ss_dssp             ECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred             ecCCCcccccCccccCCCcccEEEC
Confidence            8888888755444433334444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=1.4e-16  Score=149.67  Aligned_cols=162  Identities=21%  Similarity=0.212  Sum_probs=128.4

Q ss_pred             ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      .+.++++|+.|++++|.++.++ ..+..+++|+.|+|++|.++.++  .|..+++|+.|++++|.++.+++..++.+++|
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            5778889999999999998776 46778899999999999998875  58889999999999999998877666889999


Q ss_pred             CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccc-eeeecchhHHHHhhhh----cccEEE
Q psy18204         91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVK-LLDFSKVKLKALMNVM----FGTEII  165 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~-~Ldl~~n~l~~l~~~~----~~~~l~  165 (435)
                      ++|++++|.++.+.....+..+++|+.|+|++|.++.++...+..+..++.|. .|++++|.++.+....    ....++
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~  206 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA  206 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence            99999999998744223788899999999999999887665443444555554 7899999887654333    347788


Q ss_pred             EecCCCcccc
Q psy18204        166 LSGDSIDAGD  175 (435)
Q Consensus       166 lsgn~i~~~~  175 (435)
                      +++|.+....
T Consensus       207 L~~n~l~~~~  216 (276)
T 2z62_A          207 LDTNQLKSVP  216 (276)
T ss_dssp             CCSSCCSCCC
T ss_pred             CCCCceeecC
Confidence            8888876443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=2.3e-16  Score=141.84  Aligned_cols=132  Identities=22%  Similarity=0.335  Sum_probs=99.8

Q ss_pred             CCcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +++++.|++++|.++.++. .+..+++|+.|++++|.++.++  .|..+++|++|++++|+|+.+++..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            4577888888888876663 4567788888888888888775  367788888888888888887777667888888888


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |++|+|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.+.
T Consensus       107 L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          107 LNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCBC
T ss_pred             cCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCCee
Confidence            88888877765 3567788888888888888776653   3466788888888887554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=1.2e-16  Score=152.84  Aligned_cols=147  Identities=18%  Similarity=0.245  Sum_probs=76.4

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|+.|++++|+++.++.  +..+++|++|+
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  135 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY  135 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred             hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEE
Confidence            4445555555555555555544 44455555555555555555555555555555555555555533  24555555555


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCC
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSI  171 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i  171 (435)
                      +++|.++.++.   +..+++|+.|++++|.++.++.     +..+++|+.|++++|.++.+..   ......+.+++|.+
T Consensus       136 l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          136 LDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             CCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             CCCCccCcCcc---ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCcc
Confidence            55555554432   4455555555555555555443     2455555555555555543322   22234555555555


Q ss_pred             c
Q psy18204        172 D  172 (435)
Q Consensus       172 ~  172 (435)
                      .
T Consensus       208 ~  208 (308)
T 1h6u_A          208 S  208 (308)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=6.3e-17  Score=158.30  Aligned_cols=153  Identities=24%  Similarity=0.330  Sum_probs=117.2

Q ss_pred             CcceEEEecCCCccccc-cccc-CCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGA-TLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~-~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      ..++.|+|++|.|+.++ ..+. .+++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..|..+++|+.|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            45788999999988776 3454 7889999999999998886  588889999999999999988887778899999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhhc-------ccEEEEe
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMF-------GTEIILS  167 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~~-------~~~l~ls  167 (435)
                      |++|+|+.+.. ..+..+++|+.|+|++|.++.++...+..+..+++|+.||+++|+++.+....+       ...+.+.
T Consensus       119 L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          119 LYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             CCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             CCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            99999988764 478888999999999999988876532222568889999999998865432111       2457777


Q ss_pred             cCCCc
Q psy18204        168 GDSID  172 (435)
Q Consensus       168 gn~i~  172 (435)
                      +|.+.
T Consensus       198 ~N~~~  202 (361)
T 2xot_A          198 NNPLE  202 (361)
T ss_dssp             SSCEE
T ss_pred             CCCcc
Confidence            77665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=1.8e-16  Score=144.97  Aligned_cols=131  Identities=19%  Similarity=0.260  Sum_probs=119.4

Q ss_pred             CCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +++|+.|+|++|.|+.+ +..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..|..+++|++|+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            47899999999999977 567888999999999999999987  478999999999999999999998889999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |++|+|+.++.  .+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.+.
T Consensus       119 Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          119 MCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCBC
T ss_pred             ccCCcccccCc--ccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCCcc
Confidence            99999999886  778999999999999999988763   4578999999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=1.2e-16  Score=166.95  Aligned_cols=134  Identities=23%  Similarity=0.329  Sum_probs=120.2

Q ss_pred             CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      +++++|+|++|+|+.++ ..+..+++|++|+|++|.|+.++  .|.++++|++|+|++|+|+.+++..|+++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47999999999999987 56889999999999999999996  5999999999999999999999998999999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      ++|+|+.+++ ..++++++|+.|+|++|.++.++...  .+..+++|+.|++++|+++.+
T Consensus       132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch--hhccchhhhhhcccCcccccc
Confidence            9999999886 37899999999999999998653211  357899999999999988654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=1.8e-16  Score=144.15  Aligned_cols=146  Identities=24%  Similarity=0.277  Sum_probs=125.5

Q ss_pred             ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      -+.++++++.++.+|..+.  ++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.+.+..|.++++|++|+|++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            4789999999999997553  68999999999999986  6899999999999999999998887899999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204         99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID  172 (435)
Q Consensus        99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~  172 (435)
                      +|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.++.+...     .....+.+++|.+.
T Consensus        91 ~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPK-SLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCH-hHccCCCCCCEEECCCCCCCEeCHH---HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            9999886 4678999999999999999988654   467899999999999999865432     22367777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=2.6e-16  Score=149.31  Aligned_cols=146  Identities=19%  Similarity=0.304  Sum_probs=87.6

Q ss_pred             CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      ++++|+.|++++|.+..++. +..+++|+.|++++|.+++++.+..+++|+.|++++|.++.++.  +..+++|++|+|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~  120 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred             hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECC
Confidence            34556666666666666654 34466666666666666666556666666666666666666533  3566666666666


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCCcc
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSIDA  173 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i~~  173 (435)
                      +|+++.++   .+..+++|+.|++++|.++.++.     +..+++|+.|++++|+++.+..   ......+++++|.+..
T Consensus       121 ~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          121 HNGISDIN---GLVHLPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             TSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred             CCcCCCCh---hhcCCCCCCEEEccCCcCCcchh-----hccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC
Confidence            66666543   44556666666666666665532     3556666666666666554322   2223566666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.67  E-value=2.4e-16  Score=158.33  Aligned_cols=155  Identities=22%  Similarity=0.293  Sum_probs=118.7

Q ss_pred             cccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN   89 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~   89 (435)
                      ..|.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|.|+.++...|..+++
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS  161 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence            46788889999999999998776 66778899999999999998886  4888899999999999999888877788888


Q ss_pred             CCeeecCC-CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----hhhcccE
Q psy18204         90 LETLILTG-NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTE  163 (435)
Q Consensus        90 L~~L~Ls~-N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~  163 (435)
                      |+.|+|++ |.++.++. ..+.++++|+.|+|++|.++.+|.     +..+++|+.|++++|.++.+.     .......
T Consensus       162 L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK  235 (440)
T ss_dssp             CCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence            88888887 45566654 367778888888888888877765     356777777777777765542     2223366


Q ss_pred             EEEecCCCcc
Q psy18204        164 IILSGDSIDA  173 (435)
Q Consensus       164 l~lsgn~i~~  173 (435)
                      +.+++|.+..
T Consensus       236 L~L~~n~l~~  245 (440)
T 3zyj_A          236 LWMIQSQIQV  245 (440)
T ss_dssp             EECTTCCCCE
T ss_pred             EECCCCceeE
Confidence            7777766653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=8.6e-17  Score=143.52  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=112.4

Q ss_pred             CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      ++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++.+..+++|++|++++|+++......++.+++|++|+++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4567888999998888888 456688899999999888888788888889999999998886434444788889999999


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCC-ccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEecCCCc
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNP-VINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSGDSID  172 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsgn~i~  172 (435)
                      +|+++.... ..+..+++|+.|++++|. ++.++.     +..+++|+.|++++|.++.+.   .......+++++|.+.
T Consensus       121 ~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          121 HSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred             CCccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence            998876332 367788889999999887 777763     467888999999888876542   2233467777777653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.66  E-value=3.7e-16  Score=157.45  Aligned_cols=156  Identities=19%  Similarity=0.220  Sum_probs=117.1

Q ss_pred             ccccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      +..|.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.++...|..++
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  171 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP  171 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence            346788899999999999998776 66778899999999999998886  488899999999999999988887777888


Q ss_pred             CCCeeecCC-CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhccc
Q psy18204         89 NLETLILTG-NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGT  162 (435)
Q Consensus        89 ~L~~L~Ls~-N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~  162 (435)
                      +|+.|+|++ |.++.++. ..+..+++|+.|+|++|.++.++.     +..+++|+.|++++|.++.+..     .....
T Consensus       172 ~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  245 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPN-----LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK  245 (452)
T ss_dssp             TCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSCCC-----CTTCTTCCEEECTTSCCSEECGGGGTTCTTCC
T ss_pred             cccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccccc-----ccccccccEEECcCCcCcccCcccccCccCCC
Confidence            888888887 45566654 356777777777777777777665     3566777777777777654422     22336


Q ss_pred             EEEEecCCCcc
Q psy18204        163 EIILSGDSIDA  173 (435)
Q Consensus       163 ~l~lsgn~i~~  173 (435)
                      .+.+++|.+..
T Consensus       246 ~L~L~~n~l~~  256 (452)
T 3zyi_A          246 KLWVMNSQVSL  256 (452)
T ss_dssp             EEECTTSCCCE
T ss_pred             EEEeCCCcCce
Confidence            66666666553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=3.6e-16  Score=156.96  Aligned_cols=152  Identities=25%  Similarity=0.341  Sum_probs=112.3

Q ss_pred             CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      .+++.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..+..+++|++|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            56788888888888665 56777888888888888887775  5777888888888888888887776778888888888


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeec-CCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCC
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLH-NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSI  171 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i  171 (435)
                      ++|+|+.++. ..+..+++|+.|+|++ |.+..++..   .+..+++|+.|++++|.++.+..   ......+++++|.+
T Consensus       144 ~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          144 RNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             CCCcccccCH-HHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            8888877765 3677788888888887 445555543   34677888888888887765532   23347778888776


Q ss_pred             ccc
Q psy18204        172 DAG  174 (435)
Q Consensus       172 ~~~  174 (435)
                      ...
T Consensus       220 ~~~  222 (440)
T 3zyj_A          220 SAI  222 (440)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.66  E-value=8.2e-17  Score=155.41  Aligned_cols=149  Identities=19%  Similarity=0.242  Sum_probs=110.1

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      ..+++.|+|++|.++.+|..+..+++|+.|+|++|.|+.++ .++.+++|++|++++|.++.+|..+ +.+++|++|+|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEEECC
Confidence            46788888888888888876667888888888888888776 5778888888888888888886665 778888888888


Q ss_pred             CCcC-CCCCCCCCC---------CCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh----hhccc
Q psy18204         97 GNNI-QELGDLDPL---------STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN----VMFGT  162 (435)
Q Consensus        97 ~N~i-~~l~~~~~l---------~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~----~~~~~  162 (435)
                      +|++ ..++.  .+         ..+++|+.|+|++|.++.+|.    .+..+++|+.|++++|.++.+..    .....
T Consensus       159 ~n~~~~~~p~--~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~  232 (328)
T 4fcg_A          159 ACPELTELPE--PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLSALGPAIHHLPKLE  232 (328)
T ss_dssp             EETTCCCCCS--CSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred             CCCCccccCh--hHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence            8654 44443  33         347888888888888887765    25678888888888887765432    23347


Q ss_pred             EEEEecCCCcc
Q psy18204        163 EIILSGDSIDA  173 (435)
Q Consensus       163 ~l~lsgn~i~~  173 (435)
                      .+++++|.+..
T Consensus       233 ~L~Ls~n~~~~  243 (328)
T 4fcg_A          233 ELDLRGCTALR  243 (328)
T ss_dssp             EEECTTCTTCC
T ss_pred             EEECcCCcchh
Confidence            77888766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.66  E-value=4.6e-16  Score=156.74  Aligned_cols=153  Identities=24%  Similarity=0.292  Sum_probs=125.7

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +++++.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..++.+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            357899999999998764 66788999999999999998885  688899999999999999999888778899999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeec-CCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCC
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLH-NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDS  170 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~  170 (435)
                      |++|+|+.++. ..+..+++|+.|++++ |.+..++..   .+..+++|+.|++++|.++.+..   ......+++++|.
T Consensus       154 L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          154 LRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred             CCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence            99999988876 4788899999999998 556666653   35788999999999998876532   3344788899888


Q ss_pred             Cccc
Q psy18204        171 IDAG  174 (435)
Q Consensus       171 i~~~  174 (435)
                      +...
T Consensus       230 l~~~  233 (452)
T 3zyi_A          230 FPEI  233 (452)
T ss_dssp             CSEE
T ss_pred             Cccc
Confidence            7644

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=6.3e-16  Score=137.88  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=113.2

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCC--cCCCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK--IDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.  .+.++.+++|+.|++++|.++......++.+++|+
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            5677899999999999888776 45569999999999999987  45799999999999999999975555558999999


Q ss_pred             eeecCCCc-CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         92 TLILTGNN-IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        92 ~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +|++++|+ ++.++   .+..+++|+.|++++|.++.++.     +..+++|+.|++++|++.
T Consensus       140 ~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          140 SIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             EEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEECBC---
T ss_pred             EEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEeeCcccC
Confidence            99999998 88875   57889999999999999998764     578999999999999975

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=4.7e-16  Score=138.38  Aligned_cols=127  Identities=20%  Similarity=0.211  Sum_probs=114.3

Q ss_pred             ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204         21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN   99 (435)
Q Consensus        21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (435)
                      -+.+++++|.++.+|..+  .++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|.++++|++|+|++|+
T Consensus        12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            468999999999999654  368999999999999987 78999999999999999999998888999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204        100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.+.
T Consensus        90 l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPP-RTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCH-HHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCCee
Confidence            999886 4789999999999999999988874   3578999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.65  E-value=6.1e-16  Score=147.95  Aligned_cols=148  Identities=22%  Similarity=0.305  Sum_probs=129.8

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +.++++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+++  ++.+++|+.|+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  157 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS  157 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             HccCCCCCEEEccCCcCCCchh-hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEE
Confidence            7889999999999999998874 56799999999999999999889999999999999999999866  48999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCC
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSI  171 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i  171 (435)
                      |++|++++++.   +..+++|+.|++++|.++.++.     +..+++|+.|++++|+++.+..   ......+.+++|.+
T Consensus       158 l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          158 IGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             ccCCcCCCChh---hcCCCCCCEEECCCCccCcChh-----hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence            99999998763   7889999999999999998876     4789999999999999876543   23347888888877


Q ss_pred             cc
Q psy18204        172 DA  173 (435)
Q Consensus       172 ~~  173 (435)
                      ..
T Consensus       230 ~~  231 (308)
T 1h6u_A          230 TN  231 (308)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=2.2e-16  Score=147.55  Aligned_cols=147  Identities=17%  Similarity=0.176  Sum_probs=117.9

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      .+.++++|+.|++++|.|+.++ .+..+++|+.|+|++|.|++++.+..+++|+.|++++|+++.++...  . ++|+.|
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L  111 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP--S-ACLSRL  111 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC--C-SSCCEE
T ss_pred             chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc--c-CcccEE
Confidence            4556778999999999998888 45568899999999999988877888999999999999999886533  3 889999


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEecCC
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSGDS  170 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsgn~  170 (435)
                      +|++|+|+.++   .+..+++|+.|+|++|.++.++.     +..+++|+.|++++|+++.+.   .......+++++|.
T Consensus       112 ~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~-----l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          112 FLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM-----LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             ECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGG-----GGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             EccCCccCCCh---hhcCcccccEEECCCCcCCCChH-----HccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence            99999998864   57888999999999999988753     477899999999999887552   22233677777776


Q ss_pred             Cc
Q psy18204        171 ID  172 (435)
Q Consensus       171 i~  172 (435)
                      +.
T Consensus       184 ~~  185 (263)
T 1xeu_A          184 CV  185 (263)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.64  E-value=3.3e-16  Score=142.31  Aligned_cols=146  Identities=21%  Similarity=0.272  Sum_probs=124.1

Q ss_pred             ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC---CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID---GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      -+.+++++|.++.+|..+  ...++.|+|++|.|+.++   .|..+++|+.|+|++|+|+.+++..|..+++|++|+|++
T Consensus        13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            468999999999999654  346799999999999884   378999999999999999999988889999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccEEEEecCCCc
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTEIILSGDSID  172 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~l~lsgn~i~  172 (435)
                      |+|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.++.+..     ......+++++|.+.
T Consensus        91 N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQH-KMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCH-hHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            99998875 4688999999999999999987553   35789999999999999986532     223367777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=1.9e-16  Score=145.54  Aligned_cols=151  Identities=15%  Similarity=0.173  Sum_probs=127.2

Q ss_pred             CCcceEEEecCCCcccccc-cccCCCCCCEEEccCCC-CCCcC--CCCCCCCCCEEEccC-CccccccchhhcCCCCCCe
Q psy18204         18 PVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNND-IRKID--GFPLLKRLSCLFFNN-NRIVRIAENLQENLPNLET   92 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~ls~-N~i~~i~~~~~~~l~~L~~   92 (435)
                      +.+++.|++++|+|+.++. .+..+++|+.|++++|. ++.++  .|..+++|++|++++ |+|+.+++..|..+++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3489999999999998875 68889999999999997 99886  588999999999998 9999999888899999999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCC---EEEeecC-CccccccchHHHHhcCCccc-eeeecchhHHHHhhhh----cccE
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLK---TLCLLHN-PVINRPHYRLYVAFKLPQVK-LLDFSKVKLKALMNVM----FGTE  163 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~---~L~L~~N-~i~~~~~~~~~~~~~l~~L~-~Ldl~~n~l~~l~~~~----~~~~  163 (435)
                      |++++|+++.++.   +..+++|+   .|++++| .++.++..   .+..+++|+ .|++++|.++.+....    ....
T Consensus       110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA  183 (239)
T ss_dssp             EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEE
T ss_pred             EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCCcccCHhhcCCCCCCE
Confidence            9999999998775   56677777   9999999 89988764   357899999 9999999987654332    3367


Q ss_pred             EEEecCC-Cccc
Q psy18204        164 IILSGDS-IDAG  174 (435)
Q Consensus       164 l~lsgn~-i~~~  174 (435)
                      +.+++|. +...
T Consensus       184 L~L~~n~~l~~i  195 (239)
T 2xwt_C          184 VYLNKNKYLTVI  195 (239)
T ss_dssp             EECTTCTTCCEE
T ss_pred             EEcCCCCCcccC
Confidence            8888884 6543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.64  E-value=2.8e-16  Score=149.84  Aligned_cols=154  Identities=18%  Similarity=0.223  Sum_probs=91.2

Q ss_pred             cCCCCcceEEEecCCCcccc---cccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccc-hhhcCCCC
Q psy18204         15 YTNPVKDRELDLRGYKIPVI---ENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAE-NLQENLPN   89 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i---~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~-~~~~~l~~   89 (435)
                      |.++++|+.|++++|.++.+   +..+..+++|+.|++++|.++.++ .+..+++|++|++++|+++.++. ..+..+++
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  127 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence            55677777777777776644   333344666777777777666654 45666666666666666666654 34466666


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHh-----hhhccc
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGT  162 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~  162 (435)
                      |++|++++|.++.... ..+..+++|+.|++++|.++.  ++.    .+..+++|+.|++++|.++.+.     ......
T Consensus       128 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          128 LIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             CCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCEEECCCCcCCccch-hhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            6666666666654443 245566666666666666653  333    2355666666666666655431     112235


Q ss_pred             EEEEecCCCcc
Q psy18204        163 EIILSGDSIDA  173 (435)
Q Consensus       163 ~l~lsgn~i~~  173 (435)
                      .+++++|.+..
T Consensus       203 ~L~L~~N~l~~  213 (306)
T 2z66_A          203 VLNMSHNNFFS  213 (306)
T ss_dssp             EEECTTSCCSB
T ss_pred             EEECCCCccCc
Confidence            66666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.63  E-value=4.7e-16  Score=147.54  Aligned_cols=149  Identities=26%  Similarity=0.281  Sum_probs=130.2

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      +.+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|+.|++++|+|+.+ +.+ ..+++|+.
T Consensus        62 ~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l-~~l~~L~~  138 (291)
T 1h6t_A           62 QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGL-VHLPQLES  138 (291)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC-GGG-GGCTTCCE
T ss_pred             hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC-hhh-cCCCCCCE
Confidence            457778999999999999998887 778999999999999999999999999999999999999998 344 78999999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecC
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGD  169 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn  169 (435)
                      |++++|+++.++   .+..+++|+.|++++|.++.++.     +..+++|+.|++++|.++.+..   ......+.+++|
T Consensus       139 L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          139 LYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             EECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred             EEccCCcCCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence            999999999873   67889999999999999998765     5789999999999999876533   333478888888


Q ss_pred             CCc
Q psy18204        170 SID  172 (435)
Q Consensus       170 ~i~  172 (435)
                      .+.
T Consensus       211 ~i~  213 (291)
T 1h6t_A          211 ECL  213 (291)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=3.8e-16  Score=143.56  Aligned_cols=155  Identities=17%  Similarity=0.144  Sum_probs=131.0

Q ss_pred             ccCCCCcceEEEecCCC-cccccc-cccCCCCCCEEEccC-CCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         14 QYTNPVKDRELDLRGYK-IPVIEN-MGATLDQFDTIDFSN-NDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~-i~~i~~-~~~~l~~L~~L~Ls~-N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      .|.++++|+.|++++|. ++.++. .+..+++|+.|++++ |.|+.++  .|..+++|+.|++++|+++.+|.  ++.++
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--ccccc
Confidence            57889999999999997 998874 678899999999999 9999986  57899999999999999999976  58899


Q ss_pred             CCC---eeecCCC-cCCCCCCCCCCCCCCCCC-EEEeecCCccccccchHHHHhcCCccceeeecchh-HHHHhh-----
Q psy18204         89 NLE---TLILTGN-NIQELGDLDPLSTLPKLK-TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVK-LKALMN-----  157 (435)
Q Consensus        89 ~L~---~L~Ls~N-~i~~l~~~~~l~~l~~L~-~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~-l~~l~~-----  157 (435)
                      +|+   +|++++| +++.++. ..+..+++|+ .|++++|.++.++..   .+ ..++|+.|++++|+ ++.+..     
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~---~~-~~~~L~~L~L~~n~~l~~i~~~~~~~  202 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQGY---AF-NGTKLDAVYLNKNKYLTVIDKDAFGG  202 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECTT---TT-TTCEEEEEECTTCTTCCEECTTTTTT
T ss_pred             ccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCHh---hc-CCCCCCEEEcCCCCCcccCCHHHhhc
Confidence            998   9999999 9998886 4788999999 999999999988874   22 33899999999995 766532     


Q ss_pred             h-hcccEEEEecCCCcccc
Q psy18204        158 V-MFGTEIILSGDSIDAGD  175 (435)
Q Consensus       158 ~-~~~~~l~lsgn~i~~~~  175 (435)
                      . .....+++++|.+...+
T Consensus       203 l~~~L~~L~l~~N~l~~l~  221 (239)
T 2xwt_C          203 VYSGPSLLDVSQTSVTALP  221 (239)
T ss_dssp             CSBCCSEEECTTCCCCCCC
T ss_pred             cccCCcEEECCCCccccCC
Confidence            2 34578888888876443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=8.4e-16  Score=159.93  Aligned_cols=151  Identities=26%  Similarity=0.274  Sum_probs=126.1

Q ss_pred             ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      .+.+.++++|+.|+|++|.|..++. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|+|+.++ .+ ..|++|+
T Consensus        58 l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~  134 (605)
T 1m9s_A           58 VQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GL-VHLPQLE  134 (605)
T ss_dssp             CTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GG-GGCTTCS
T ss_pred             ChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cc-cCCCccC
Confidence            3467778899999999999998877 6679999999999999999888999999999999999999874 34 7899999


Q ss_pred             eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEec
Q psy18204         92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSG  168 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsg  168 (435)
                      .|+|++|+|+.++   .+..+++|+.|+|++|.++.++.     +..+++|+.|++++|.++.+.   .......+.+++
T Consensus       135 ~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          135 SLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  206 (605)
T ss_dssp             EEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred             EEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccC
Confidence            9999999998873   67889999999999999987765     478899999999999886553   333457888888


Q ss_pred             CCCcc
Q psy18204        169 DSIDA  173 (435)
Q Consensus       169 n~i~~  173 (435)
                      |.+..
T Consensus       207 N~l~~  211 (605)
T 1m9s_A          207 QECLN  211 (605)
T ss_dssp             EEEEC
T ss_pred             CcCcC
Confidence            77653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.62  E-value=7.1e-16  Score=148.83  Aligned_cols=156  Identities=19%  Similarity=0.200  Sum_probs=131.0

Q ss_pred             ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccc-cccchh------
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIV-RIAENL------   83 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~-~i~~~~------   83 (435)
                      +..+.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.++ .+..+++|+.|++++|++. .+|..+      
T Consensus        97 p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A           97 PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            44577789999999999999999988889999999999999999887 7899999999999997655 566554      


Q ss_pred             --hcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----
Q psy18204         84 --QENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----  156 (435)
Q Consensus        84 --~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----  156 (435)
                        ++.+++|++|+|++|+|+.++.  .+..+++|+.|+|++|.++.++.    .+..+++|+.|++++|.+....     
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~~~~~p~~~~  250 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRGCTALRNYPPIFG  250 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred             hhhccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcCCcchhhhHHHhc
Confidence              2359999999999999998875  78999999999999999998877    3678999999999999876432     


Q ss_pred             hhhcccEEEEecCCCcc
Q psy18204        157 NVMFGTEIILSGDSIDA  173 (435)
Q Consensus       157 ~~~~~~~l~lsgn~i~~  173 (435)
                      .......+++++|.+..
T Consensus       251 ~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          251 GRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             CCCCCCEEECTTCTTCC
T ss_pred             CCCCCCEEECCCCCchh
Confidence            22334788888876543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=1.1e-15  Score=135.85  Aligned_cols=127  Identities=21%  Similarity=0.239  Sum_probs=111.8

Q ss_pred             ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC---CCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG---FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      -+.+++++|.++.+|..+.  .+|+.|++++|.|+.++.   |..+++|+.|+|++|+|+.+++..+..+++|++|+|++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3789999999999997553  389999999999998862   78999999999999999999877779999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |+|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCCcc
Confidence            99998876 4688999999999999999976443   3578999999999999876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.9e-15  Score=147.24  Aligned_cols=151  Identities=21%  Similarity=0.222  Sum_probs=121.6

Q ss_pred             CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ++|++|++++|.++.++. .+..+++|+.|++++|.+++++  .|..+++|++|++++|+|+.+++..++.+++|++|+|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            478999999999998775 6778999999999999998874  5888999999999999999998887788999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecC-CccccccchHHHHhcCCccceeeecchhHHHHh-----hhhcccEEEEecC
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHN-PVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEIILSGD  169 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l~lsgn  169 (435)
                      ++|+++.++....+..+++|+.|++++| .++.++..   .+..+++|+.|++++|.++...     .......+.+++|
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHH---HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            9999988775346788999999999998 46666543   3567888999999998876542     2223367778877


Q ss_pred             CCc
Q psy18204        170 SID  172 (435)
Q Consensus       170 ~i~  172 (435)
                      .+.
T Consensus       209 ~l~  211 (353)
T 2z80_A          209 QHI  211 (353)
T ss_dssp             CST
T ss_pred             ccc
Confidence            764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=2.4e-15  Score=135.19  Aligned_cols=146  Identities=23%  Similarity=0.259  Sum_probs=125.5

Q ss_pred             ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      -+.++.+++.++.+|...  .++|+.|++++|.++.++  .|..+++|+.|++++|+|+.+++..+..+++|++|+|++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            467899999999998554  468999999999999886  3789999999999999999999888899999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204         99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID  172 (435)
Q Consensus        99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~  172 (435)
                      +|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.++.+...     .....+++++|.+.
T Consensus        87 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           87 QLQSLPN-GVFDKLTQLKELALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCccCH-hHhcCccCCCEEEcCCCcCcccCHh---HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            9998876 3678999999999999999988764   357899999999999998765432     33478888888665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.62  E-value=4.8e-16  Score=148.97  Aligned_cols=155  Identities=15%  Similarity=0.145  Sum_probs=97.4

Q ss_pred             ccccCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCCCCCC-cC-CCCCCCCCCEEEccCCccc-cccchhhcCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRK-ID-GFPLLKRLSCLFFNNNRIV-RIAENLQENL   87 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~~~~~~~l   87 (435)
                      +..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++ .+|..+ ..+
T Consensus        94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l  172 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-GSF  172 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GCC
T ss_pred             ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH-hhh
Confidence            445677788888888888887 677777778888888888888873 34 5777788888888888887 455444 566


Q ss_pred             C-CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh----hccc
Q psy18204         88 P-NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV----MFGT  162 (435)
Q Consensus        88 ~-~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~----~~~~  162 (435)
                      + +|+.|++++|+++...+ ..+..++ |+.|++++|.++.....   .+..+++|+.|++++|.++.....    ....
T Consensus       173 ~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~  247 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNMLEGDASV---LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN  247 (313)
T ss_dssp             CTTCCEEECCSSEEEEECC-GGGGGCC-CSEEECCSSEEEECCGG---GCCTTSCCSEEECCSSEECCBGGGCCCCTTCC
T ss_pred             hhcCcEEECcCCeeeccCC-hHHhCCc-ccEEECcCCcccCcCCH---HHhcCCCCCEEECCCCceeeecCcccccCCCC
Confidence            5 77778887777763222 1444444 66666666666533221   234555566666666555422111    2225


Q ss_pred             EEEEecCCCc
Q psy18204        163 EIILSGDSID  172 (435)
Q Consensus       163 ~l~lsgn~i~  172 (435)
                      .+++++|.+.
T Consensus       248 ~L~Ls~N~l~  257 (313)
T 1ogq_A          248 GLDLRNNRIY  257 (313)
T ss_dssp             EEECCSSCCE
T ss_pred             EEECcCCccc
Confidence            5555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.62  E-value=2.1e-15  Score=152.83  Aligned_cols=136  Identities=20%  Similarity=0.273  Sum_probs=70.4

Q ss_pred             ccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      .|.++++|++|+|++|.|+.+ +..+..+++|+.|+|++|.++.++  .|..+++|++|+|++|+++.+++..+..+++|
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            344455555555555555543 344445555555555555555554  24555555555555555555544444555555


Q ss_pred             CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      ++|+|++|.++.+.. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.+.
T Consensus       131 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          131 KSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEESCCCC
T ss_pred             CEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCCCCcCc
Confidence            555555555554443 2455555555555555555554432   3345555555555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.62  E-value=1.4e-15  Score=150.06  Aligned_cols=131  Identities=18%  Similarity=0.306  Sum_probs=66.7

Q ss_pred             CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      .+++.|++++|.++.+|. .+..+++|+.|++++|.++.++  .|..+++|++|++++|.++.+++..++.+++|++|+|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            455555555555555542 2344555555555555555443  3455555555555555555555444455555555555


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      ++|+++.++. ..+..+++|++|++++|.++.++..   .+..+++|+.|++++|+++
T Consensus       125 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          125 ERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTSSCTTCCEEECCSSCCS
T ss_pred             CCCccCcCCH-HHhcCCCCCcEEECCCCccCccChh---hccCCCCCCEEECCCCcCC
Confidence            5555555443 1344555555555555555544332   2344555555555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.61  E-value=9.9e-16  Score=149.17  Aligned_cols=156  Identities=18%  Similarity=0.178  Sum_probs=131.0

Q ss_pred             ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccc-hhhcCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAE-NLQENLPN   89 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~-~~~~~l~~   89 (435)
                      .+.++++|+.|++++|.++.++ ..+..+++|+.|++++|.|+.++  .+..+++|++|++++|+++.++. ..+..+++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            5788999999999999999775 56888999999999999999987  38899999999999999999987 56689999


Q ss_pred             CCeeecCCC-cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccE
Q psy18204         90 LETLILTGN-NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTE  163 (435)
Q Consensus        90 L~~L~Ls~N-~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~  163 (435)
                      |++|++++| .++.++. ..+..+++|+.|++++|.++.+...   .+..+++|+.|++++|.+..+...     .....
T Consensus       151 L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  226 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC  226 (353)
T ss_dssp             CCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEE
T ss_pred             CcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchhhhhhhcccccE
Confidence            999999999 5777764 4788899999999999999876432   357889999999999988665443     33478


Q ss_pred             EEEecCCCcc
Q psy18204        164 IILSGDSIDA  173 (435)
Q Consensus       164 l~lsgn~i~~  173 (435)
                      +++++|.+..
T Consensus       227 L~L~~n~l~~  236 (353)
T 2z80_A          227 LELRDTDLDT  236 (353)
T ss_dssp             EEEESCBCTT
T ss_pred             EECCCCcccc
Confidence            8888888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=9.7e-16  Score=146.09  Aligned_cols=157  Identities=20%  Similarity=0.203  Sum_probs=131.4

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC---CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID---GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      .+.++++|+.|++++|.+..++..+..+++|+.|++++|.++.++   .+..+++|+.|++++|.++.+.+..+..+++|
T Consensus        73 ~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  152 (306)
T 2z66_A           73 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  152 (306)
T ss_dssp             HHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred             ccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence            445678999999999999998877888999999999999998875   58889999999999999998877777899999


Q ss_pred             CeeecCCCcCCC--CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccE
Q psy18204         91 ETLILTGNNIQE--LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTE  163 (435)
Q Consensus        91 ~~L~Ls~N~i~~--l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~  163 (435)
                      ++|++++|.+++  ++.  .+..+++|+.|++++|.++.++..   .+..+++|+.|++++|.++.+..     ......
T Consensus       153 ~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          153 EVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             CEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             CEEECCCCccccccchh--HHhhCcCCCEEECCCCCcCCcCHH---HhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            999999999976  443  788899999999999999877543   35788999999999999876533     234588


Q ss_pred             EEEecCCCcccc
Q psy18204        164 IILSGDSIDAGD  175 (435)
Q Consensus       164 l~lsgn~i~~~~  175 (435)
                      +++++|.+....
T Consensus       228 L~L~~N~l~~~~  239 (306)
T 2z66_A          228 LDYSLNHIMTSK  239 (306)
T ss_dssp             EECTTSCCCBCS
T ss_pred             eECCCCCCcccC
Confidence            999999887543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=3.8e-15  Score=130.30  Aligned_cols=128  Identities=18%  Similarity=0.260  Sum_probs=113.2

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      ..+.+++++++++.+|..+  .++|+.|++++|.++.++  .|..+++|++|++++|+|+.+++..+..+++|++|+|++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4578999999999998544  478999999999999886  478999999999999999999988889999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |+|+.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.|++++|.+.
T Consensus        86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCH-HHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEecCCCee
Confidence            99998876 3678899999999999999988874   3467999999999999865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=2.6e-15  Score=140.28  Aligned_cols=131  Identities=24%  Similarity=0.322  Sum_probs=117.1

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      +.+.++++|+.|++++|.|+.++. +..+++|+.|++++|.++.++.+.. ++|+.|++++|+|+.++ . ++.+++|+.
T Consensus        57 ~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~-l~~l~~L~~  132 (263)
T 1xeu_A           57 AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-S-LIHLKNLEI  132 (263)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-G-GTTCTTCCE
T ss_pred             hHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh-h-hcCcccccE
Confidence            357788999999999999999888 7789999999999999999987766 99999999999999985 3 489999999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      |+|++|+|++++   .+..+++|+.|+|++|.++.++.     +..+++|+.|++++|++...
T Consensus       133 L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~~-----l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          133 LSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTGG-----LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             EECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCTT-----STTCCCCCEEEEEEEEEECC
T ss_pred             EECCCCcCCCCh---HHccCCCCCEEECCCCcCcchHH-----hccCCCCCEEeCCCCcccCC
Confidence            999999999875   67889999999999999998733     57899999999999998744

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.61  E-value=2.4e-15  Score=152.41  Aligned_cols=153  Identities=24%  Similarity=0.262  Sum_probs=132.4

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +.+++.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.+.  .|..+++|++|+|++|+|+.++...|..+++|++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            458999999999999875 67888999999999999999884  699999999999999999999988889999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----hhhcccEEEEecC
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEIILSGD  169 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l~lsgn  169 (435)
                      |++|+++.+.+ ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|+++.+.     .......+.+++|
T Consensus       111 Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          111 ISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHR---AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTT---SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CCCCccccCCh-hHccccccCCEEECCCCccceeChh---hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            99999988765 4789999999999999999977653   3578999999999999987643     3344588999988


Q ss_pred             CCccc
Q psy18204        170 SIDAG  174 (435)
Q Consensus       170 ~i~~~  174 (435)
                      .+...
T Consensus       187 ~i~~~  191 (477)
T 2id5_A          187 NINAI  191 (477)
T ss_dssp             CCCEE
T ss_pred             cCcEe
Confidence            87643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.60  E-value=2.5e-15  Score=148.26  Aligned_cols=172  Identities=20%  Similarity=0.215  Sum_probs=94.4

Q ss_pred             CCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         16 TNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      .++++|++|++++|.++.++ ..+..+++|+.|+|++|.++.++  .|..+++|++|++++|.++.++..+++.+++|++
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  145 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence            34455555666655555444 24455555555555555555553  3455555555555555555555555455555555


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccch----------------------------------------
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYR----------------------------------------  132 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~----------------------------------------  132 (435)
                      |++++|+++.+++ ..+..+++|+.|++++|.++.++...                                        
T Consensus       146 L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~  224 (390)
T 3o6n_A          146 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  224 (390)
T ss_dssp             EECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred             EECCCCccCccCh-hhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence            5555555555443 24455555555555555544321000                                        


Q ss_pred             ----------------HHHHhcCCccceeeecchhHHHHh-----hhhcccEEEEecCCCcccccceeecCCccccc
Q psy18204        133 ----------------LYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEIILSGDSIDAGDQALFIMNHRTRLD  188 (435)
Q Consensus       133 ----------------~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD  188 (435)
                                      ...+..+++|+.|++++|.++.+.     .......+.+++|.+...........++..+|
T Consensus       225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  301 (390)
T 3o6n_A          225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD  301 (390)
T ss_dssp             CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEE
T ss_pred             cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEE
Confidence                            012467788999999999886542     23344788888888765433332233333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=2.3e-15  Score=157.04  Aligned_cols=159  Identities=20%  Similarity=0.248  Sum_probs=90.0

Q ss_pred             CCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         16 TNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      .++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++  .|+.+++|++|+|++|.|+.+|+.+|+.+++|++
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  151 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence            34455666666666655444 34555556666666666665554  3455556666666666666555555555566666


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccch----------------------------------------
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYR----------------------------------------  132 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~----------------------------------------  132 (435)
                      |+|++|.++.+++ ..+..+++|+.|+|++|.++.++...                                        
T Consensus       152 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~  230 (597)
T 3oja_B          152 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  230 (597)
T ss_dssp             EECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred             EEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence            6666665555443 24555555555555555544322100                                        


Q ss_pred             ----------------HHHHhcCCccceeeecchhHHHHh-----hhhcccEEEEecCCCcccc
Q psy18204        133 ----------------LYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEIILSGDSIDAGD  175 (435)
Q Consensus       133 ----------------~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l~lsgn~i~~~~  175 (435)
                                      ...+..+++|+.|++++|.++.+.     .......+.+++|.+....
T Consensus       231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~  294 (597)
T 3oja_B          231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN  294 (597)
T ss_dssp             CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE
T ss_pred             CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC
Confidence                            012466788888888888876542     2333477888888776543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.60  E-value=1.4e-15  Score=145.59  Aligned_cols=174  Identities=16%  Similarity=0.112  Sum_probs=125.4

Q ss_pred             CCCCcceEEEecCCCcccccccccCC-----CCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccc---cch-hh
Q psy18204         16 TNPVKDRELDLRGYKIPVIENMGATL-----DQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRI---AEN-LQ   84 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~~~~~~l-----~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i---~~~-~~   84 (435)
                      .++++|+.|++++|.++.+|..+..+     ++|++|+|++|.|+.++  .|..+++|+.|++++|++...   +.. .+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            67889999999999998777655555     88999999999998886  588899999999999987642   222 23


Q ss_pred             cCCCCCCeeecCCCcCCCCCCC--CCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhh--c
Q psy18204         85 ENLPNLETLILTGNNIQELGDL--DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM--F  160 (435)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~--~  160 (435)
                      +.+++|++|+|++|+|+.++.+  ..+..+++|+.|+|++|.++..+...  .+..+++|+.|++++|.++.+....  .
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~~~~~  275 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP--SCDWPSQLNSLNLSFTGLKQVPKGLPAK  275 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--CCCCCTTCCEEECTTSCCSSCCSSCCSE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--hhhhcCCCCEEECCCCccChhhhhccCC
Confidence            7888999999999988854431  13356788999999999988654211  2345788999999999888665444  3


Q ss_pred             ccEEEEecCCCcccccceeecCCccccccchhchh
Q psy18204        161 GTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGC  195 (435)
Q Consensus       161 ~~~l~lsgn~i~~~~~~~~i~nh~~~lD~l~l~~~  195 (435)
                      ...+++++|.+...+.    ..+...+..+.+.++
T Consensus       276 L~~L~Ls~N~l~~~p~----~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          276 LSVLDLSYNRLDRNPS----PDELPQVGNLSLKGN  306 (312)
T ss_dssp             EEEEECCSSCCCSCCC----TTTSCEEEEEECTTC
T ss_pred             ceEEECCCCCCCCChh----HhhCCCCCEEeccCC
Confidence            4778888888876532    233444444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=2.4e-16  Score=150.78  Aligned_cols=174  Identities=18%  Similarity=0.084  Sum_probs=128.0

Q ss_pred             ccCCCCcceEEEecCCCcc-cccccc--cCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCccccccchhh
Q psy18204         14 QYTNPVKDRELDLRGYKIP-VIENMG--ATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVRIAENLQ   84 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~-~i~~~~--~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~~~~~   84 (435)
                      .+..+++|++|++++|.+. .+|..+  ..+++|+.|+|++|.++...      .+..+++|++|++++|+|+.+++..+
T Consensus        86 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  165 (310)
T 4glp_A           86 RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV  165 (310)
T ss_dssp             HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred             HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence            3334566999999999988 455554  77899999999999998631      34578899999999999998887777


Q ss_pred             cCCCCCCeeecCCCcCCC---CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----
Q psy18204         85 ENLPNLETLILTGNNIQE---LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----  156 (435)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~---l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----  156 (435)
                      +.+++|++|+|++|++..   ++....+..+++|++|+|++|.++.++......+..+++|+.||+++|+++...     
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~  245 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP  245 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence            899999999999998754   322224467889999999999998766543334578899999999999987651     


Q ss_pred             hh---hcccEEEEecCCCcccccceeecCCcccccc
Q psy18204        157 NV---MFGTEIILSGDSIDAGDQALFIMNHRTRLDW  189 (435)
Q Consensus       157 ~~---~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD~  189 (435)
                      ..   .....+++++|.+...+..+.  .++..+|.
T Consensus       246 ~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~L  279 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDL  279 (310)
T ss_dssp             SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEEC
T ss_pred             hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEEC
Confidence            11   245788888888874433332  34444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=2.3e-15  Score=157.04  Aligned_cols=151  Identities=17%  Similarity=0.231  Sum_probs=127.6

Q ss_pred             CCCcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         17 NPVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      .+.+++.|++++|.+..+|. .+..+++|+.|+|++|.|+.++  .|+.+++|+.|+|++|.|+.+++..++.+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            35788999999999999884 4677999999999999999986  69999999999999999999999888999999999


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh--hhhcccEEEEecCCC
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM--NVMFGTEIILSGDSI  171 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~--~~~~~~~l~lsgn~i  171 (435)
                      +|++|.|+.++. ..+..+++|++|+|++|.++.++..   .+..+++|+.|++++|.++.+.  .......+.+++|.+
T Consensus       129 ~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChh---hhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence            999999999886 3578999999999999999987664   3578999999999999887542  122224555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=2.9e-15  Score=146.45  Aligned_cols=135  Identities=26%  Similarity=0.309  Sum_probs=118.3

Q ss_pred             cC-CCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         15 YT-NPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        15 ~~-~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      +. ++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..|..+++|
T Consensus        59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence            44 8899999999999999887 56888999999999999999986  48999999999999999999988888999999


Q ss_pred             CeeecCCCcCCCCCCCCCC---CCCCCCCEEEeecCCccccccchHHHHhcCCc--cceeeecchhHH
Q psy18204         91 ETLILTGNNIQELGDLDPL---STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ--VKLLDFSKVKLK  153 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l---~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~--L~~Ldl~~n~l~  153 (435)
                      +.|+|++|+|+.++. ..+   ..+++|+.|+|++|.|+.++..   .+..++.  |+.|++++|.+.
T Consensus       139 ~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          139 QKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSCEE
T ss_pred             CEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCCcc
Confidence            999999999999886 244   5799999999999999988754   4567777  488999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.59  E-value=4.4e-15  Score=143.13  Aligned_cols=148  Identities=22%  Similarity=0.318  Sum_probs=84.9

Q ss_pred             CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCc----CCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKI----DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      ++|++|++++|.++.++ ..+..+++|+.|++++|.++..    ..+..+++|+.|++++|.++.++..++   ++|++|
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L  197 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTEL  197 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEE
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEE
Confidence            46667777777666554 3355566666666666666532    135556666666666666666654432   566666


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh----hcccEEEEecC
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV----MFGTEIILSGD  169 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~----~~~~~l~lsgn  169 (435)
                      ++++|+++.+.. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|+++.+...    .....+++++|
T Consensus       198 ~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          198 HLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             ECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTT---TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             ECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChh---hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence            666666655543 2555666666666666666654432   234566666666666665544322    22355666666


Q ss_pred             CCcc
Q psy18204        170 SIDA  173 (435)
Q Consensus       170 ~i~~  173 (435)
                      .+..
T Consensus       274 ~i~~  277 (330)
T 1xku_A          274 NISA  277 (330)
T ss_dssp             CCCC
T ss_pred             cCCc
Confidence            5553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.59  E-value=1e-15  Score=146.73  Aligned_cols=150  Identities=18%  Similarity=0.240  Sum_probs=99.9

Q ss_pred             CcceEEEecCCCcc---cccccccCCCCCCEEEccC-CCCCC-cC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         19 VKDRELDLRGYKIP---VIENMGATLDQFDTIDFSN-NDIRK-ID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        19 ~~L~~L~L~~n~i~---~i~~~~~~l~~L~~L~Ls~-N~l~~-l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      .+++.|+|++|.++   .+|..+..+++|+.|++++ |.+.+ ++ .|..+++|++|++++|+++...+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            46777888888776   4666777777888888874 77753 34 5777777888888888877433444477778888


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcc-ccccchHHHHhcCC-ccceeeecchhHHHH----hhhhcccEEEE
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI-NRPHYRLYVAFKLP-QVKLLDFSKVKLKAL----MNVMFGTEIIL  166 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~l~-~L~~Ldl~~n~l~~l----~~~~~~~~l~l  166 (435)
                      |+|++|.++...+ ..+..+++|++|+|++|.++ .+|.    .+..++ +|+.|++++|+++..    ........+++
T Consensus       130 L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~L  204 (313)
T 1ogq_A          130 LDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL  204 (313)
T ss_dssp             EECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEEC
T ss_pred             EeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCH----HHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEEC
Confidence            8888887763222 26677777888888888777 5554    245665 777777777776521    11112466777


Q ss_pred             ecCCCcc
Q psy18204        167 SGDSIDA  173 (435)
Q Consensus       167 sgn~i~~  173 (435)
                      ++|.+..
T Consensus       205 s~N~l~~  211 (313)
T 1ogq_A          205 SRNMLEG  211 (313)
T ss_dssp             CSSEEEE
T ss_pred             cCCcccC
Confidence            7776653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=6.9e-15  Score=130.76  Aligned_cols=109  Identities=27%  Similarity=0.405  Sum_probs=101.5

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      +.++++|+|++|.|+.+|..+..+++|+.|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..|..+++|+.|+|
T Consensus        30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            35899999999999999988889999999999999999996  5999999999999999999999988899999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccc
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN  127 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~  127 (435)
                      ++|+|+.++. ..+..+++|+.|+|++|++..
T Consensus       110 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          110 HGNDISVVPE-GAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCCBCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCeeCh-hhhhcCccccEEEeCCCCeec
Confidence            9999999886 468899999999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=3.7e-16  Score=149.64  Aligned_cols=159  Identities=18%  Similarity=0.066  Sum_probs=113.1

Q ss_pred             CCCcceEEEecCCCcc-cccccc--cCCCCCCEEEccCCCCCCcC-CCCCC-----CCCCEEEccCCccccccchhhcCC
Q psy18204         17 NPVKDRELDLRGYKIP-VIENMG--ATLDQFDTIDFSNNDIRKID-GFPLL-----KRLSCLFFNNNRIVRIAENLQENL   87 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~-~i~~~~--~~l~~L~~L~Ls~N~l~~l~-~l~~l-----~~L~~L~ls~N~i~~i~~~~~~~l   87 (435)
                      ++++|++|++++|.++ .+|..+  ..+++|+.|+|++|.+++++ .+..+     ++|++|++++|+|+.+++..++.+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5778888888888887 566543  67888888888888888775 23333     788888888888888876666888


Q ss_pred             CCCCeeecCCCcCCCC---CCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh--h----h
Q psy18204         88 PNLETLILTGNNIQEL---GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM--N----V  158 (435)
Q Consensus        88 ~~L~~L~Ls~N~i~~l---~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~--~----~  158 (435)
                      ++|++|+|++|++...   +....+..+++|+.|+|++|.++.++......+..+++|+.|++++|+++...  .    .
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            8888888888886432   11013367888888888888888655433334567788888888888877632  1    1


Q ss_pred             hcccEEEEecCCCcccc
Q psy18204        159 MFGTEIILSGDSIDAGD  175 (435)
Q Consensus       159 ~~~~~l~lsgn~i~~~~  175 (435)
                      .....+++++|.+...+
T Consensus       253 ~~L~~L~Ls~N~l~~ip  269 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQVP  269 (312)
T ss_dssp             TTCCEEECTTSCCSSCC
T ss_pred             CCCCEEECCCCccChhh
Confidence            23477888888776433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.59  E-value=8.5e-15  Score=141.13  Aligned_cols=147  Identities=22%  Similarity=0.305  Sum_probs=78.5

Q ss_pred             CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ++++.|++++|.|+.++. .+..+++|++|+|++|.++.+ + .|..+++|++|++++|.++.+|..++   ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence            456666666666665553 455666666666666666665 2 46666666666666666666654432   45555556


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHhhh--hcccEEEEecCCC
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALMNV--MFGTEIILSGDSI  171 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~--~~~~~l~lsgn~i  171 (435)
                      ++|.++.++. ..+..+++|+.|++++|.++.  +...   .+..+++|+.|++++|.++.+...  .....+.+++|.+
T Consensus       129 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l  204 (330)
T 1xku_A          129 HENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENG---AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI  204 (330)
T ss_dssp             CSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTT---GGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCC
T ss_pred             CCCcccccCH-hHhcCCccccEEECCCCcCCccCcChh---hccCCCCcCEEECCCCccccCCccccccCCEEECCCCcC
Confidence            5555555443 234555555555555555542  1111   234455555555555554433221  1224455555444


Q ss_pred             c
Q psy18204        172 D  172 (435)
Q Consensus       172 ~  172 (435)
                      .
T Consensus       205 ~  205 (330)
T 1xku_A          205 T  205 (330)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.58  E-value=6.1e-15  Score=142.30  Aligned_cols=86  Identities=23%  Similarity=0.350  Sum_probs=54.8

Q ss_pred             ccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      .+.++++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++ .+.  ++|++|++++|.++.+++..+..+++|+
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            455666666666666666654 445556666666666666666655 222  5666666666666666666556677777


Q ss_pred             eeecCCCcCC
Q psy18204         92 TLILTGNNIQ  101 (435)
Q Consensus        92 ~L~Ls~N~i~  101 (435)
                      +|++++|.++
T Consensus       151 ~L~l~~n~l~  160 (332)
T 2ft3_A          151 CIEMGGNPLE  160 (332)
T ss_dssp             EEECCSCCCB
T ss_pred             EEECCCCccc
Confidence            7777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=4e-15  Score=153.83  Aligned_cols=125  Identities=26%  Similarity=0.356  Sum_probs=107.9

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      .|+.|+|++|.|+.+|. ++.+++|+.|+|++|.|+.+| .++.+++|+.|+|++|+|+.+| .+ +.+++|+.|+|++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEEECCCC
Confidence            58899999999999987 778999999999999999887 6889999999999999999986 44 88999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeee
Q psy18204         99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDF  147 (435)
Q Consensus        99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl  147 (435)
                      +|+.+.....+..+++|+.|+|++|+++.++.....++..+|+|+.||+
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9988841137888999999999999999888776667778999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=8.4e-15  Score=142.01  Aligned_cols=149  Identities=23%  Similarity=0.240  Sum_probs=79.4

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC----------------------CCCCCCCCEEEcc
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG----------------------FPLLKRLSCLFFN   72 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~----------------------l~~l~~L~~L~ls   72 (435)
                      +.++++|+.|++++|.+..++. +..+++|+.|++++|.++.++.                      +..+++|+.|+++
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  229 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG  229 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEcc
Confidence            4455555555555555554443 3345555555555555554443                      4445555555555


Q ss_pred             CCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhH
Q psy18204         73 NNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL  152 (435)
Q Consensus        73 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l  152 (435)
                      +|.++.+++  +..+++|++|++++|.++.++   .+..+++|+.|++++|.++.++.     +..+++|+.|++++|.+
T Consensus       230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          230 NNKITDLSP--LANLSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISDISV-----LNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCC
T ss_pred             CCccCCCcc--hhcCCCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccCCChh-----hcCCCCCCEEECcCCcC
Confidence            555555544  355556666666666555542   34555666666666666655532     34566666666666655


Q ss_pred             HHH-----hhhhcccEEEEecCCCccc
Q psy18204        153 KAL-----MNVMFGTEIILSGDSIDAG  174 (435)
Q Consensus       153 ~~l-----~~~~~~~~l~lsgn~i~~~  174 (435)
                      +..     ........+++++|.+...
T Consensus       300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          300 GNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCcChhHhhccccCCEEEccCCccccc
Confidence            432     1222335666666655433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=2e-15  Score=144.39  Aligned_cols=156  Identities=12%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             CCCCcceEEEecCCCcccc-c----ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCcccc---ccchh-h
Q psy18204         16 TNPVKDRELDLRGYKIPVI-E----NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVR---IAENL-Q   84 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i-~----~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~---i~~~~-~   84 (435)
                      .++++|++|++++|.++.. +    ..+..+++|+.|+|++|.++.++  .+..+++|++|++++|++..   ++... +
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            4455555555555555531 1    11223555555555555555543  34555555555555555443   21111 1


Q ss_pred             cCCCCCCeeecCCCcCCCCCCCC--CCCCCCCCCEEEeecCCcccc-ccchHHHHhcCCccceeeecchhHHHHhhhh--
Q psy18204         85 ENLPNLETLILTGNNIQELGDLD--PLSTLPKLKTLCLLHNPVINR-PHYRLYVAFKLPQVKLLDFSKVKLKALMNVM--  159 (435)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~l~~~~--~l~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~--  159 (435)
                      +.+++|++|+|++|+++.++...  .+..+++|++|+|++|.++.. |... .....+++|+.|++++|+++.+....  
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~lp~~~~~  272 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQVPKGLPA  272 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCchhhhhcC
Confidence            34555555555555554433200  123445555555555555543 2210 00111245555555555555432222  


Q ss_pred             cccEEEEecCCCc
Q psy18204        160 FGTEIILSGDSID  172 (435)
Q Consensus       160 ~~~~l~lsgn~i~  172 (435)
                      ....+++++|.+.
T Consensus       273 ~L~~L~Ls~N~l~  285 (310)
T 4glp_A          273 KLRVLDLSSNRLN  285 (310)
T ss_dssp             CCSCEECCSCCCC
T ss_pred             CCCEEECCCCcCC
Confidence            2245555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.57  E-value=5.8e-15  Score=154.03  Aligned_cols=155  Identities=21%  Similarity=0.283  Sum_probs=124.7

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      ++++++|+|++|.++.++ ..+..+++|+.|+|++|.++.++  .|..+++|++|++++|+++.+++..++++++|++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            367899999999998776 47788999999999999999884  588999999999999999998777678999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHhhh-----hc----ccE
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MF----GTE  163 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~----~~~  163 (435)
                      |++|.++.++.. .+..+++|++|++++|.++.  +|.    .+..+++|+.|++++|.++.+...     ..    ...
T Consensus       111 L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          111 AVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS  185 (606)
T ss_dssp             CTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred             ccCCcccccccc-ccCCCCCCCEEeCCCCcccceechH----hHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence            999999888753 78899999999999999885  455    367899999999999987654221     11    136


Q ss_pred             EEEecCCCcccccc
Q psy18204        164 IILSGDSIDAGDQA  177 (435)
Q Consensus       164 l~lsgn~i~~~~~~  177 (435)
                      +.+++|.+......
T Consensus       186 L~l~~n~l~~~~~~  199 (606)
T 3vq2_A          186 LDMSLNPIDFIQDQ  199 (606)
T ss_dssp             EECTTCCCCEECTT
T ss_pred             eeccCCCcceeCcc
Confidence            77777777644433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.57  E-value=1.3e-15  Score=154.87  Aligned_cols=168  Identities=17%  Similarity=0.116  Sum_probs=101.2

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccch--------------
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN--------------   82 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~--------------   82 (435)
                      +++|+.|+|++|.++.++ ..+..+++|+.|+|++|.|++...+..+++|+.|+|++|.|+.++..              
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            446777777777777554 45666777777777777776655566666676666666666654421              


Q ss_pred             --hhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---
Q psy18204         83 --LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---  157 (435)
Q Consensus        83 --~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---  157 (435)
                        ....+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.++.++...  ....+++|+.|++++|.++.+..   
T Consensus       113 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--l~~~l~~L~~L~Ls~N~l~~~~~~~~  189 (487)
T 3oja_A          113 RVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHLNLQYNFIYDVKGQVV  189 (487)
T ss_dssp             CEEECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCCCEEEGGG--GGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred             CCCccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCCCCcChHH--HhhhCCcccEEecCCCcccccccccc
Confidence              01235667777777777776654 25666777777777777777543221  12356777777777777655422   


Q ss_pred             hhcccEEEEecCCCcccccceeecCCccccc
Q psy18204        158 VMFGTEIILSGDSIDAGDQALFIMNHRTRLD  188 (435)
Q Consensus       158 ~~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD  188 (435)
                      ......+++++|.+......+..+.++..+|
T Consensus       190 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~  220 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS  220 (487)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred             CCCCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence            2233666677766665444333333333333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=7.8e-15  Score=151.70  Aligned_cols=153  Identities=23%  Similarity=0.335  Sum_probs=129.8

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +.+++.|++++|.++.++ ..+..+++|++|+|++|.++.++  .|..+++|++|++++|+++.+++..++++++|++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            457999999999999876 56888999999999999999885  589999999999999999999888889999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHh-----hhhcc----cE
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFG----TE  163 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~----~~  163 (435)
                      +++|+++.++.. .+..+++|++|++++|.++.  +|.    .+..+++|+.|++++|.++.+.     .....    ..
T Consensus       107 L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          107 AVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             ccccccccCCCc-cccccccccEEecCCCccceecChh----hhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence            999999998864 68999999999999999986  455    3688999999999999876532     22222    57


Q ss_pred             EEEecCCCcccc
Q psy18204        164 IILSGDSIDAGD  175 (435)
Q Consensus       164 l~lsgn~i~~~~  175 (435)
                      +.+++|.+....
T Consensus       182 L~l~~n~l~~~~  193 (570)
T 2z63_A          182 LDLSLNPMNFIQ  193 (570)
T ss_dssp             EECTTCCCCEEC
T ss_pred             cccCCCCceecC
Confidence            888888776443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.56  E-value=1.6e-14  Score=139.94  Aligned_cols=130  Identities=22%  Similarity=0.253  Sum_probs=63.8

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +..+++|++|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.  +..+++|+.|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~  138 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN  138 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred             hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEE
Confidence            3444455555555555554444 34455555555555555555445555555555555555555433  24455555555


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      +++|......  ..+..+++|+.|++++|.++.++.     +..+++|+.|++++|.+..
T Consensus       139 l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          139 LGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             CTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCCCC
T ss_pred             CCCCCCcccc--cchhhCCCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCcccc
Confidence            5555322211  134455555555555555554433     2455555555555555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.56  E-value=4.1e-15  Score=155.13  Aligned_cols=134  Identities=22%  Similarity=0.184  Sum_probs=62.0

Q ss_pred             cCCCCcceEEEecCCCcccc---cccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccc-hhhcCCCC
Q psy18204         15 YTNPVKDRELDLRGYKIPVI---ENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAE-NLQENLPN   89 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i---~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~-~~~~~l~~   89 (435)
                      +.++++|+.|++++|.++.+   +..+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+++ ..+..+++
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            34455555555555555433   333444555555555555554443 34445555555555555554433 23344455


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHH
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |++|++++|.++...+ ..+..+++|+.|++++|.++.  ++.    .+..+++|+.|++++|.++
T Consensus       426 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~  486 (606)
T 3vq2_A          426 LLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQLE  486 (606)
T ss_dssp             CCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCC
T ss_pred             CCEEECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcCC
Confidence            5555555554443322 134444444444444444443  222    1234444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.56  E-value=1.4e-14  Score=139.74  Aligned_cols=132  Identities=16%  Similarity=0.219  Sum_probs=84.7

Q ss_pred             ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCcccc--ccchhhcCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVR--IAENLQENL   87 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~--i~~~~~~~l   87 (435)
                      +..+.++++|+.|++++|.++.+|....  ++|+.|++++|.++.++  .+..+++|+.|++++|.++.  +.+..+..+
T Consensus        95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL  172 (332)
T ss_dssp             GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred             HhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence            3467888999999999999998886543  78999999999998886  37888889999999888864  444444555


Q ss_pred             CCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        88 ~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                       +|+.|++++|+++.++.  .+  .++|+.|++++|.++.++..   .+..+++|+.|++++|+++
T Consensus       173 -~L~~L~l~~n~l~~l~~--~~--~~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~L~~N~l~  230 (332)
T 2ft3_A          173 -KLNYLRISEAKLTGIPK--DL--PETLNELHLDHNKIQAIELE---DLLRYSKLYRLGLGHNQIR  230 (332)
T ss_dssp             -CCSCCBCCSSBCSSCCS--SS--CSSCSCCBCCSSCCCCCCTT---SSTTCTTCSCCBCCSSCCC
T ss_pred             -ccCEEECcCCCCCccCc--cc--cCCCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCC
Confidence             56666666666555443  11  13444444444444443321   1234444444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=6.3e-15  Score=153.75  Aligned_cols=158  Identities=22%  Similarity=0.303  Sum_probs=127.6

Q ss_pred             CCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +.+++.|++++|.|+.+ +..+..+++|++|+|++|.++.+.  .|..+++|++|++++|+++.+++..++.+++|++|+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            34789999999999977 467888999999999999998874  689999999999999999988777779999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----hhhccc--EEEEe
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGT--EIILS  167 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~--~l~ls  167 (435)
                      +++|+++.++.. .+..+++|++|++++|.++.++..   .+..+++|+.|++++|.++.+.     ......  .+.++
T Consensus       112 L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~  187 (606)
T 3t6q_A          112 FIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLP---KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN  187 (606)
T ss_dssp             CTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCC---TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred             ccccCcccCCcc-hhccCCcccEEECCCCcccccCcc---cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence            999999987543 788999999999999999876322   1245899999999999886542     222234  78888


Q ss_pred             cCCCccccccee
Q psy18204        168 GDSIDAGDQALF  179 (435)
Q Consensus       168 gn~i~~~~~~~~  179 (435)
                      +|.+....+..+
T Consensus       188 ~n~l~~~~~~~~  199 (606)
T 3t6q_A          188 GNDIAGIEPGAF  199 (606)
T ss_dssp             TCCCCEECTTTT
T ss_pred             CCccCccChhHh
Confidence            888775544433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.56  E-value=1.1e-14  Score=152.10  Aligned_cols=143  Identities=22%  Similarity=0.227  Sum_probs=118.9

Q ss_pred             cccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN   89 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~   89 (435)
                      ..|.++++|+.|+|++|+|+.|+ +.+..+++|++|+|++|.|+.++  .|.++++|++|++++|+|+.+++..|+.+++
T Consensus        70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~  149 (635)
T 4g8a_A           70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  149 (635)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence            46889999999999999999887 56889999999999999999987  5899999999999999999999888899999


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCc-cceeeecchhHHHH
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ-VKLLDFSKVKLKAL  155 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~-L~~Ldl~~n~l~~l  155 (435)
                      |++|+|++|.++.+.....+..+++|++|+|++|.++.++...+..+..++. +..++++.|.+..+
T Consensus       150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i  216 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  216 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence            9999999999987654346788999999999999999776544333333332 33566666665443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.56  E-value=1.2e-14  Score=146.24  Aligned_cols=131  Identities=27%  Similarity=0.338  Sum_probs=94.3

Q ss_pred             CcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ++|+.|++++|.+..+ +..+..+++|+.|++++|.+++++  .|..+++|+.|++++|.++.+++..++.+++|++|+|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            4677777777777743 455667777777777777777664  5777777777777777777776666677777777777


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      ++|+++.+.+ ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|+++
T Consensus       355 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          355 SYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBC
T ss_pred             CCCcccccCh-hhccccccccEEECCCCccccCCHh---HhccCCcccEEEccCCCcc
Confidence            7777776643 3667777777777777777776653   3456777777777777765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.56  E-value=1.3e-15  Score=146.16  Aligned_cols=170  Identities=16%  Similarity=0.112  Sum_probs=115.9

Q ss_pred             CCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccch-------------
Q psy18204         17 NPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN-------------   82 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~-------------   82 (435)
                      .+++|++|+|++|.++.++ ..+..+++|+.|+|++|.+++...+..+++|++|++++|+|+.++..             
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l  111 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence            4557777788777777655 45667777777777777777665566677777777777776654321             


Q ss_pred             ---hhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-
Q psy18204         83 ---LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-  158 (435)
Q Consensus        83 ---~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-  158 (435)
                         ....+++|++|++++|+++.+++ ..+..+++|+.|+|++|.++.++...  ....+++|+.|++++|.++.+... 
T Consensus       112 ~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~  188 (317)
T 3o53_A          112 SRVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHLNLQYNFIYDVKGQV  188 (317)
T ss_dssp             SEEEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGG--GGGGTTTCCEEECTTSCCCEEECCC
T ss_pred             CCcCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHH--HhhccCcCCEEECCCCcCccccccc
Confidence               01345678888888888887765 36777889999999999988764321  224678899999999988765332 


Q ss_pred             --hcccEEEEecCCCcccccceeecCCcccccc
Q psy18204        159 --MFGTEIILSGDSIDAGDQALFIMNHRTRLDW  189 (435)
Q Consensus       159 --~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD~  189 (435)
                        .....+++++|.+......+....++..+|.
T Consensus       189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L  221 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL  221 (317)
T ss_dssp             CCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred             ccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence              3347888888888755444433444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.55  E-value=1.3e-14  Score=153.60  Aligned_cols=160  Identities=25%  Similarity=0.234  Sum_probs=99.9

Q ss_pred             ccCCCCcceEEEecCCCcc-ccc-ccccCCCCCCEEEccCCCCCCc---------------------------C-CCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIP-VIE-NMGATLDQFDTIDFSNNDIRKI---------------------------D-GFPLL   63 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~-~i~-~~~~~l~~L~~L~Ls~N~l~~l---------------------------~-~l~~l   63 (435)
                      .+.++++|+.|++++|.+. .++ ..+..+++|+.|++++|.++.+                           + .+..+
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            4556666677777766665 343 3444555555555555554332                           2 35666


Q ss_pred             CCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCC-------CCCCCCCCCCCEEEeecCCccccccchHHHH
Q psy18204         64 KRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD-------LDPLSTLPKLKTLCLLHNPVINRPHYRLYVA  136 (435)
Q Consensus        64 ~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~-------~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~  136 (435)
                      ++|+.|++++|+|+.+++..+..+++|++|+|++|+++.++.       ...+..+++|+.|+|++|.++.+|..   .+
T Consensus       480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~---~~  556 (680)
T 1ziw_A          480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE---VF  556 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT---TT
T ss_pred             CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH---Hc
Confidence            777777777777777766666777777777777777765421       11356677777777777777766653   34


Q ss_pred             hcCCccceeeecchhHHHHhhhh-----cccEEEEecCCCccccc
Q psy18204        137 FKLPQVKLLDFSKVKLKALMNVM-----FGTEIILSGDSIDAGDQ  176 (435)
Q Consensus       137 ~~l~~L~~Ldl~~n~l~~l~~~~-----~~~~l~lsgn~i~~~~~  176 (435)
                      ..+++|+.|++++|+++.+....     ....+++++|.+.....
T Consensus       557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            56777777777777776554332     33677777777664443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=3.4e-15  Score=151.84  Aligned_cols=171  Identities=19%  Similarity=0.138  Sum_probs=135.1

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC------------------CCCCCCCCEEEccCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG------------------FPLLKRLSCLFFNNN   74 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~------------------l~~l~~L~~L~ls~N   74 (435)
                      ..|.++++|+.|+|++|.++.++. +..+++|+.|+|++|.|++++.                  ...+++|+.|++++|
T Consensus        52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N  130 (487)
T 3oja_A           52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN  130 (487)
T ss_dssp             GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSS
T ss_pred             HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCC
Confidence            467889999999999999986665 7789999999999998876531                  123577899999999


Q ss_pred             ccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCC-CCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         75 RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLS-TLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        75 ~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~-~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      .|+.+++..++.+++|+.|+|++|.|+.... ..+. .+++|+.|+|++|.++.++..     ..+++|+.|++++|.++
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~-----~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             CCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSSCCC
T ss_pred             CCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCCcccccccc-----ccCCCCCEEECCCCCCC
Confidence            9998877666899999999999999987654 2444 789999999999999988764     46999999999999987


Q ss_pred             HHhh----hhcccEEEEecCCCcccccceeecCCccccccc
Q psy18204        154 ALMN----VMFGTEIILSGDSIDAGDQALFIMNHRTRLDWN  190 (435)
Q Consensus       154 ~l~~----~~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD~l  190 (435)
                      .+..    ......+++++|.+...+..+..+.++..+|..
T Consensus       205 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred             CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence            6533    344589999999988655544444445554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.54  E-value=2e-14  Score=144.50  Aligned_cols=80  Identities=20%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccE
Q psy18204         89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTE  163 (435)
Q Consensus        89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~  163 (435)
                      +|+.|++++|.++.... ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|.++.+..     ......
T Consensus       276 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDN---AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             CCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             CceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChh---HhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            34444444444433322 2445555555555555555544322   23445555555555555543311     122245


Q ss_pred             EEEecCCCc
Q psy18204        164 IILSGDSID  172 (435)
Q Consensus       164 l~lsgn~i~  172 (435)
                      +++++|.+.
T Consensus       352 L~Ls~N~l~  360 (455)
T 3v47_A          352 LDLSYNHIR  360 (455)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCccc
Confidence            555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.54  E-value=2.5e-14  Score=147.38  Aligned_cols=125  Identities=20%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             CCCcceEEEecCCCccc-cc---ccccCCCCCCEEEccCCCCCCcC----CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         17 NPVKDRELDLRGYKIPV-IE---NMGATLDQFDTIDFSNNDIRKID----GFPLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~-i~---~~~~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      ++++|+.|++++|.+.. ++   ..+..+++|+.|++++|.++.++    .+..+++|+.|++++|+++.+|..+ +.++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-QWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCC-CCCT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhh-cccc
Confidence            34555556666555552 21   22344555555555555555543    1455555555555555555554433 4555


Q ss_pred             CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +|++|++++|+|+.++.  .+  .++|+.|++++|.++.++       ..+++|+.|++++|+++
T Consensus       411 ~L~~L~Ls~N~l~~l~~--~~--~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~  464 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKT--CI--PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLK  464 (549)
T ss_dssp             TCCEEECTTSCCSCCCT--TS--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCS
T ss_pred             cccEEECCCCCcccccc--hh--cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccC
Confidence            55555555555554443  11  134444444444444332       13444444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=2.8e-15  Score=143.88  Aligned_cols=156  Identities=19%  Similarity=0.131  Sum_probs=115.2

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC------------------CCCCCCCCEEEccCCc
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG------------------FPLLKRLSCLFFNNNR   75 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~------------------l~~l~~L~~L~ls~N~   75 (435)
                      .+.++++|+.|++++|.++.++. +..+++|+.|++++|.|++++.                  ...+++|+.|++++|+
T Consensus        53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~  131 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK  131 (317)
T ss_dssp             HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred             HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence            46678888999999998886655 6678888888888887765431                  1234667888888888


Q ss_pred             cccccchhhcCCCCCCeeecCCCcCCCCCCCCCC-CCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204         76 IVRIAENLQENLPNLETLILTGNNIQELGDLDPL-STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        76 i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l-~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      ++.+++..++.+++|++|+|++|.++.+... .+ ..+++|+.|+|++|.++.++..     ..+++|+.|++++|+++.
T Consensus       132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-----~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             CCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSSCCCE
T ss_pred             CCCccchhhhccCCCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCcccccc-----cccccCCEEECCCCcCCc
Confidence            8887776667888899999999988876542 33 4678899999999988877653     358889999999888865


Q ss_pred             Hhh----hhcccEEEEecCCCccccc
Q psy18204        155 LMN----VMFGTEIILSGDSIDAGDQ  176 (435)
Q Consensus       155 l~~----~~~~~~l~lsgn~i~~~~~  176 (435)
                      +..    ......+++++|.+...+.
T Consensus       206 l~~~~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          206 MGPEFQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             ECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             chhhhcccCcccEEECcCCcccchhh
Confidence            532    3344788888888774433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.54  E-value=1.5e-14  Score=150.56  Aligned_cols=130  Identities=27%  Similarity=0.339  Sum_probs=117.5

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +.++++|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|+|+.+ +.+ +.+++|+.|+
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l-~~l~~L~~L~  159 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVL-SRLTKLDTLS  159 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGG-GSCTTCSEEE
T ss_pred             hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhh-cccCCCCEEE
Confidence            778999999999999999887 4567999999999999999999899999999999999999998 444 8999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      |++|+|+.+++   +..+++|+.|+|++|.++.++.     +..+++|+.|++++|++...
T Consensus       160 Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          160 LEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTTCSEEECCSEEEECC
T ss_pred             CcCCcCCCchh---hccCCCCCEEECcCCCCCCChH-----HccCCCCCEEEccCCcCcCC
Confidence            99999988763   7889999999999999998854     57899999999999998643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.53  E-value=2.8e-14  Score=148.80  Aligned_cols=139  Identities=22%  Similarity=0.187  Sum_probs=116.3

Q ss_pred             ccccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      +..|.++++|++|+|++|.+..+ |..+..+++|++|+|++|.++.+.  .|..+++|++|++++|+|+.+++..++.++
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence            34688999999999999999866 577889999999999999998874  689999999999999999998776678999


Q ss_pred             CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccc--eeeecchhHHH
Q psy18204         89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVK--LLDFSKVKLKA  154 (435)
Q Consensus        89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~--~Ldl~~n~l~~  154 (435)
                      +|++|++++|+++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+  .|++++|.++.
T Consensus       130 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             TCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCCSEEEECTTCCCCE
T ss_pred             cccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChh---hhhhhcccceeEEecCCCccCc
Confidence            99999999999988753 2555699999999999999876543   456677777  67777776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.53  E-value=4.3e-14  Score=149.52  Aligned_cols=155  Identities=22%  Similarity=0.230  Sum_probs=123.9

Q ss_pred             cCCCCcceEEEecCCCcc---cccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccch-------
Q psy18204         15 YTNPVKDRELDLRGYKIP---VIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAEN-------   82 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~---~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~-------   82 (435)
                      |.++++|+.|++++|.+.   .+|..+..+++|+.|++++|.|+.++  .|..+++|+.|++++|+++.++..       
T Consensus       450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  529 (680)
T 1ziw_A          450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI  529 (680)
T ss_dssp             TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred             hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence            334445555555555443   34566778899999999999999986  489999999999999999987432       


Q ss_pred             -hhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh----
Q psy18204         83 -LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN----  157 (435)
Q Consensus        83 -~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~----  157 (435)
                       .++.+++|+.|+|++|+|+.++. ..+..+++|+.|+|++|.++.++..   .+..+++|+.|++++|+++.+..    
T Consensus       530 ~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          530 YFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLPAS---VFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             hhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcceeECCCCCCCcCCHh---HhCCCCCCCEEECCCCcCCccChhHhc
Confidence             25889999999999999998885 4789999999999999999998875   45789999999999999876533    


Q ss_pred             --hhcccEEEEecCCCcc
Q psy18204        158 --VMFGTEIILSGDSIDA  173 (435)
Q Consensus       158 --~~~~~~l~lsgn~i~~  173 (435)
                        ......+++++|.+..
T Consensus       606 ~~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          606 PAFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             HHHTTCSEEECTTCCCCB
T ss_pred             ccccccCEEEccCCCccc
Confidence              3345788888888753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.8e-14  Score=155.22  Aligned_cols=159  Identities=13%  Similarity=0.141  Sum_probs=109.1

Q ss_pred             ccCCCCcceEEEecCCCcccccc--cccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCC-C
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIEN--MGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPN-L   90 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~--~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~-L   90 (435)
                      .+..+++|+.|+|++|.++.+|.  .+..+++|+.|+|++|.++.++.|+.+++|+.|+|++|+++.+|..+ ..+++ |
T Consensus       543 ~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l-~~l~~~L  621 (876)
T 4ecn_A          543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF-CAFTDQV  621 (876)
T ss_dssp             CTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTS-CEECTTC
T ss_pred             cccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHH-hhccccC
Confidence            44556688888888888887877  67778888888888888887777788888888888888888776665 67777 8


Q ss_pred             CeeecCCCcCCCCCCCCCCCCCC--CCCEEEeecCCcccc-ccchH-HHHhcCCccceeeecchhHHHHhhhh-----cc
Q psy18204         91 ETLILTGNNIQELGDLDPLSTLP--KLKTLCLLHNPVINR-PHYRL-YVAFKLPQVKLLDFSKVKLKALMNVM-----FG  161 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l~~l~--~L~~L~L~~N~i~~~-~~~~~-~~~~~l~~L~~Ldl~~n~l~~l~~~~-----~~  161 (435)
                      +.|+|++|+|+.++.  .+..++  +|+.|+|++|.++.. |.... .....+++|+.|++++|.++.+....     ..
T Consensus       622 ~~L~Ls~N~L~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L  699 (876)
T 4ecn_A          622 EGLGFSHNKLKYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI  699 (876)
T ss_dssp             CEEECCSSCCCSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred             CEEECcCCCCCcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCC
Confidence            888888888887764  444443  377777777776532 21100 00113457788888888776554332     34


Q ss_pred             cEEEEecCCCcccc
Q psy18204        162 TEIILSGDSIDAGD  175 (435)
Q Consensus       162 ~~l~lsgn~i~~~~  175 (435)
                      ..+.+++|.+...+
T Consensus       700 ~~L~Ls~N~L~~ip  713 (876)
T 4ecn_A          700 STIILSNNLMTSIP  713 (876)
T ss_dssp             SEEECCSCCCSCCC
T ss_pred             CEEECCCCcCCccC
Confidence            77778777766333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.53  E-value=3.3e-14  Score=146.47  Aligned_cols=133  Identities=22%  Similarity=0.234  Sum_probs=109.4

Q ss_pred             CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ++|++|++++|.++.++ ..+..+++|++|++++|.++.++  .|..+++|++|++++|+++.+++..++.+++|++|+|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            58999999999998764 66788999999999999998885  5889999999999999999998886789999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCC-ccccccchHHHHhcCCccceeeecchhHHH
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNP-VINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      ++|.++.++....+..+++|+.|++++|. +..++..   .+..+++|+.|++++|.++.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTCCE
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccccCeeeccCCcccc
Confidence            99999865433467889999999999988 5566532   34667778888888777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=5.7e-14  Score=122.16  Aligned_cols=107  Identities=21%  Similarity=0.308  Sum_probs=95.3

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      ..+.+++++|.++.+|..+  .++|+.|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|..+++|++|+|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4688999999999999655  378999999999999985  589999999999999999999998889999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccc
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRP  129 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~  129 (435)
                      |+|+.++. ..+..+++|+.|+|++|+++...
T Consensus        88 N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999886 46889999999999999987544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=3.8e-14  Score=146.07  Aligned_cols=149  Identities=15%  Similarity=0.170  Sum_probs=91.4

Q ss_pred             CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      ++|+.|+|++|.|+.+|   ..+++|+.|+|++|.|+.++.++.  +|+.|++++|+|+.+|.    .+++|+.|+|++|
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence            45666666666666666   235666666666666666655333  66666666666666655    4566777777777


Q ss_pred             cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhh--cc-------cEEEEecC
Q psy18204         99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM--FG-------TEIILSGD  169 (435)
Q Consensus        99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~--~~-------~~l~lsgn  169 (435)
                      +|+.++.     .+++|+.|+|++|.++.+|..     .  ++|+.|++++|+++.+.. .  ..       ..+++++|
T Consensus       151 ~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~l-----~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          151 QLTMLPE-----LPTSLEVLSVRNNQLTFLPEL-----P--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCREN  217 (571)
T ss_dssp             CCSCCCC-----CCTTCCEEECCSSCCSCCCCC-----C--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSS
T ss_pred             ccCcCCC-----cCCCcCEEECCCCCCCCcchh-----h--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCC
Confidence            7766553     356777777777777776651     1  677777777777765433 1  12       56677777


Q ss_pred             CCcccccceeecCCcccccc
Q psy18204        170 SIDAGDQALFIMNHRTRLDW  189 (435)
Q Consensus       170 ~i~~~~~~~~i~nh~~~lD~  189 (435)
                      .+...+..+....++..+|.
T Consensus       218 ~l~~lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          218 RITHIPENILSLDPTCTIIL  237 (571)
T ss_dssp             CCCCCCGGGGGSCTTEEEEC
T ss_pred             cceecCHHHhcCCCCCEEEe
Confidence            77655444444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=5.3e-14  Score=124.85  Aligned_cols=109  Identities=23%  Similarity=0.303  Sum_probs=99.0

Q ss_pred             CcceEEEecCCCcccccc--cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         19 VKDRELDLRGYKIPVIEN--MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~--~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      .++++|++++|.|+.++.  .+..+++|+.|+|++|.|+++.  .|..+++|+.|+|++|+|+.+++..+..+++|++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            389999999999998874  4788999999999999999984  699999999999999999999988779999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR  128 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~  128 (435)
                      |++|+|+.+.+ ..+..+++|+.|+|++|+++..
T Consensus       109 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          109 LYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCc
Confidence            99999998764 4788999999999999999843

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1e-13  Score=121.21  Aligned_cols=110  Identities=23%  Similarity=0.415  Sum_probs=99.5

Q ss_pred             CCcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +++|+.|++++|.++.++. .+..+++|+.|++++|.|+.++  .|..+++|+.|++++|+|+.+++..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            4689999999999998874 5678999999999999999987  378999999999999999999988889999999999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR  128 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~  128 (435)
                      |++|+|+.++. ..+..+++|+.|+|++|+++..
T Consensus       107 l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          107 LDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred             CcCCcceEeCH-HHhcCCcccCEEEecCCCeecc
Confidence            99999998886 4678899999999999998753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.51  E-value=2.8e-14  Score=153.12  Aligned_cols=90  Identities=18%  Similarity=0.029  Sum_probs=62.6

Q ss_pred             ccccCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      +..+.++++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++. + .++.+++|+.|++++|+++...+..++.++
T Consensus       459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  538 (768)
T 3rgz_A          459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR  538 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred             CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            345666777788888888777 5666677777788888888777743 4 567777777777777777743333336777


Q ss_pred             CCCeeecCCCcCC
Q psy18204         89 NLETLILTGNNIQ  101 (435)
Q Consensus        89 ~L~~L~Ls~N~i~  101 (435)
                      +|+.|++++|+++
T Consensus       539 ~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          539 SLIWLDLNTNLFN  551 (768)
T ss_dssp             TCCEEECCSSEEE
T ss_pred             CCCEEECCCCccC
Confidence            7777777777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=1e-13  Score=121.09  Aligned_cols=107  Identities=21%  Similarity=0.324  Sum_probs=94.8

Q ss_pred             ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      .+.+++++|.++.+|..+  .++|+.|+|++|.|++++  .|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            478999999999998755  378999999999999985  5899999999999999999999988889999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204         99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus        99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      +|+.++. ..+..+++|+.|+|++|++...+.
T Consensus        92 ~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence            9998886 358889999999999999886543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.50  E-value=8.2e-14  Score=140.81  Aligned_cols=149  Identities=28%  Similarity=0.310  Sum_probs=89.1

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      .+.++++|+.|++++|.++.++. +..+++|+.|++++|.++.+..++.+++|+.|++++|+++.++ . +..+++|+.|
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L  248 (466)
T 1o6v_A          172 PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-T-LASLTNLTDL  248 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-GGGCTTCSEE
T ss_pred             hhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-h-hhcCCCCCEE
Confidence            36667777777777777776654 3456677777777777766655556666666666666666652 2 2556666666


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCC
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDS  170 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~  170 (435)
                      ++++|.++.++   .+..+++|+.|++++|.++.++.     +..+++|+.|++++|+++.+..   ......+++++|.
T Consensus       249 ~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          249 DLANNQISNLA---PLSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             ECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             ECCCCccccch---hhhcCCCCCEEECCCCccCcccc-----ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence            66666665544   24556666666666666655543     2455566666666665543322   2223555555555


Q ss_pred             Ccc
Q psy18204        171 IDA  173 (435)
Q Consensus       171 i~~  173 (435)
                      +..
T Consensus       321 l~~  323 (466)
T 1o6v_A          321 ISD  323 (466)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=8.8e-15  Score=155.73  Aligned_cols=114  Identities=23%  Similarity=0.287  Sum_probs=90.5

Q ss_pred             cccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCC
Q psy18204         35 ENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLP  113 (435)
Q Consensus        35 ~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~  113 (435)
                      +..+..+.+|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.+|..+ +.+++|+.|+|++|+|+.++.  .+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~--~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA--ELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCS--SGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccCh--hhcCCC
Confidence            455667888888999988888886 5668888888999999888887666 788889999999998888765  678888


Q ss_pred             CCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204        114 KLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus       114 ~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      +|+.|+|++|.|+.+|..    +..+++|+.|++++|.++..
T Consensus       294 ~L~~L~L~~N~l~~lp~~----~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWE----FGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             TCSEEECCSSCCCCCCSS----TTSCTTCCCEECTTSCCCSH
T ss_pred             CCCEEECCCCCCCccChh----hhcCCCccEEeCCCCccCCC
Confidence            888999988888888763    57888888889888887643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.50  E-value=4e-14  Score=144.92  Aligned_cols=146  Identities=18%  Similarity=0.260  Sum_probs=85.8

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccc--hhhcCCCCCCeeec
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAE--NLQENLPNLETLIL   95 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~--~~~~~l~~L~~L~L   95 (435)
                      +|+.|++++|.+..++. ...+++|+.|++++|.+++. + .+..+++|+.|++++|+++.++.  ..++.+++|++|++
T Consensus       303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            56667777766654432 13566677777777776652 2 56666677777777777765432  33466677777777


Q ss_pred             CCCcCCC-CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC-CccceeeecchhHHHHhhh----hcccEEEEecC
Q psy18204         96 TGNNIQE-LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL-PQVKLLDFSKVKLKALMNV----MFGTEIILSGD  169 (435)
Q Consensus        96 s~N~i~~-l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l-~~L~~Ldl~~n~l~~l~~~----~~~~~l~lsgn  169 (435)
                      ++|.++. ++. ..+..+++|+.|++++|.++....      ..+ ++|+.|++++|+++.+...    .....+++++|
T Consensus       382 s~N~l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~------~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          382 SQNSVSYDEKK-GDCSWTKSLLSLNMSSNILTDTIF------RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CSSCCBCCGGG-CSCCCCTTCCEEECCSSCCCGGGG------GSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCcCCccccc-chhccCccCCEEECcCCCCCcchh------hhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence            7777665 543 245566666777777666653211      112 5666666666666544332    23366666666


Q ss_pred             CCcc
Q psy18204        170 SIDA  173 (435)
Q Consensus       170 ~i~~  173 (435)
                      .+..
T Consensus       455 ~l~~  458 (520)
T 2z7x_B          455 QLKS  458 (520)
T ss_dssp             CCCC
T ss_pred             cCCc
Confidence            6653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.49  E-value=4.7e-14  Score=148.17  Aligned_cols=135  Identities=21%  Similarity=0.262  Sum_probs=69.9

Q ss_pred             cCCCCc-ceEEEecCCCcccccccccCCC--CCCEEEccCCCCCCc-C-CCC-------CCCCCCEEEccCCccccccch
Q psy18204         15 YTNPVK-DRELDLRGYKIPVIENMGATLD--QFDTIDFSNNDIRKI-D-GFP-------LLKRLSCLFFNNNRIVRIAEN   82 (435)
Q Consensus        15 ~~~~~~-L~~L~L~~n~i~~i~~~~~~l~--~L~~L~Ls~N~l~~l-~-~l~-------~l~~L~~L~ls~N~i~~i~~~   82 (435)
                      +.++++ |+.|++++|.++.+|..+..+.  +|+.|++++|.+++. + .++       .+++|+.|++++|+|+.+|..
T Consensus       372 l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~  451 (636)
T 4eco_A          372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE  451 (636)
T ss_dssp             SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred             hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH
Confidence            444444 5555555555555554433322  455555555555443 1 233       445556666666666665555


Q ss_pred             hhcCCCCCCeeecCCCcCCCCCCCCCCCC-------CCCCCEEEeecCCccccccchHHHHh--cCCccceeeecchhHH
Q psy18204         83 LQENLPNLETLILTGNNIQELGDLDPLST-------LPKLKTLCLLHNPVINRPHYRLYVAF--KLPQVKLLDFSKVKLK  153 (435)
Q Consensus        83 ~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~-------l~~L~~L~L~~N~i~~~~~~~~~~~~--~l~~L~~Ldl~~n~l~  153 (435)
                      ++..+++|+.|+|++|+|+.++. ..+..       +++|+.|+|++|.++.+|..    +.  .+++|+.|++++|+++
T Consensus       452 ~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~~~~~l~~L~~L~Ls~N~l~  526 (636)
T 4eco_A          452 LFSTGSPLSSINLMGNMLTEIPK-NSLKDENENFKNTYLLTSIDLRFNKLTKLSDD----FRATTLPYLVGIDLSYNSFS  526 (636)
T ss_dssp             HHHTTCCCSEEECCSSCCSBCCS-SSSEETTEECTTGGGCCEEECCSSCCCBCCGG----GSTTTCTTCCEEECCSSCCS
T ss_pred             HHccCCCCCEEECCCCCCCCcCH-HHhccccccccccCCccEEECcCCcCCccChh----hhhccCCCcCEEECCCCCCC
Confidence            55555666666666666655543 12221       12566666666666555542    22  5556666666666554


Q ss_pred             H
Q psy18204        154 A  154 (435)
Q Consensus       154 ~  154 (435)
                      .
T Consensus       527 ~  527 (636)
T 4eco_A          527 K  527 (636)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=4.8e-14  Score=145.76  Aligned_cols=154  Identities=21%  Similarity=0.178  Sum_probs=126.9

Q ss_pred             cccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN   89 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~   89 (435)
                      ..|.++++|+.|++++|.++.++ ..+..+++|++|+|++|.++.++  .|..+++|++|++++|+++.+++..++.+++
T Consensus        46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (570)
T ss_dssp             TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred             hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence            36788999999999999999876 66888999999999999999885  6999999999999999999998765689999


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCcc----ceeeecchhHHHHhhhh----cc
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQV----KLLDFSKVKLKALMNVM----FG  161 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L----~~Ldl~~n~l~~l~~~~----~~  161 (435)
                      |++|++++|.++.+.....+.++++|+.|++++|.++.++...   +..+++|    ..|++++|.++.+....    ..
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L  202 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL  202 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG---GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH---ccchhccchhhhhcccCCCCceecCHHHhccCcc
Confidence            9999999999987432237889999999999999999876543   3445555    78999999886553322    23


Q ss_pred             cEEEEecC
Q psy18204        162 TEIILSGD  169 (435)
Q Consensus       162 ~~l~lsgn  169 (435)
                      ..+.+++|
T Consensus       203 ~~L~l~~n  210 (570)
T 2z63_A          203 HKLTLRNN  210 (570)
T ss_dssp             EEEEEESC
T ss_pred             eeEecccc
Confidence            56666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=1.6e-14  Score=155.78  Aligned_cols=158  Identities=14%  Similarity=0.101  Sum_probs=117.0

Q ss_pred             cccccCCCCcceEEEecCCCccc------------------cccccc--CCCCCCEEEccCCCCCC-cC-CCCCCCCCCE
Q psy18204         11 QCMQYTNPVKDRELDLRGYKIPV------------------IENMGA--TLDQFDTIDFSNNDIRK-ID-GFPLLKRLSC   68 (435)
Q Consensus        11 ~~~~~~~~~~L~~L~L~~n~i~~------------------i~~~~~--~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~   68 (435)
                      .|..+.++++|+.|+|++|.++.                  +|..++  .+++|+.|+|++|.+.+ +| .|..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            35568888889999999998887                  887766  88889999998888654 45 5788888888


Q ss_pred             EEccCCc-ccc--ccchh------hcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC
Q psy18204         69 LFFNNNR-IVR--IAENL------QENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL  139 (435)
Q Consensus        69 L~ls~N~-i~~--i~~~~------~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l  139 (435)
                      |+|++|+ ++.  +|..+      +..+++|+.|+|++|+++.++....+..+++|+.|+|++|.++.+|.     +..+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~-----~~~L  594 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-----FGTN  594 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCC-----CCTT
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchh-----hcCC
Confidence            8888887 775  66543      12445888888888888866531246778888888888888887773     4678


Q ss_pred             CccceeeecchhHHHHhh----hhc-ccEEEEecCCCcc
Q psy18204        140 PQVKLLDFSKVKLKALMN----VMF-GTEIILSGDSIDA  173 (435)
Q Consensus       140 ~~L~~Ldl~~n~l~~l~~----~~~-~~~l~lsgn~i~~  173 (435)
                      ++|+.|++++|.++.+..    ... ...+.+++|.+..
T Consensus       595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~  633 (876)
T 4ecn_A          595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY  633 (876)
T ss_dssp             SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS
T ss_pred             CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc
Confidence            888888888888764432    223 5677788877763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.49  E-value=1.4e-13  Score=142.40  Aligned_cols=146  Identities=20%  Similarity=0.207  Sum_probs=119.1

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      +...+.+++++|+++.+|..+  .++|+.|+|++|.|+.++  .|..+++|++|++++|+|+.+++..|+.+++|++|+|
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCcEEEcCCCCCccCCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            445588999999999998654  378999999999999886  6899999999999999999998877789999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH--hhhhcc--cEEEEecCCC
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL--MNVMFG--TEIILSGDSI  171 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l--~~~~~~--~~l~lsgn~i  171 (435)
                      ++|+|+.++.  .  .+++|++|+|++|.++.++...  .+..+++|+.|++++|.++..  ......  ..+.+++|.+
T Consensus       108 s~N~l~~lp~--~--~l~~L~~L~Ls~N~l~~l~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQNISC--C--PMASLRHLDLSFNDFDVLPVCK--EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCCEECS--C--CCTTCSEEECCSSCCSBCCCCG--GGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCCccCc--c--ccccCCEEECCCCCccccCchH--hhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence            9999998875  2  7899999999999998765211  367899999999999988642  223333  7888888877

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.49  E-value=6.8e-14  Score=141.07  Aligned_cols=122  Identities=19%  Similarity=0.177  Sum_probs=82.8

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      .+.++++|+.|++++|.++.+| .+..+++|+.|++++|.|++++ ++.+++|++|++++|.|+.++   ++.+++|++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L  111 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYL  111 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEE
T ss_pred             ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEE
Confidence            4455677777888877777776 3456777777777777777765 677777777777777777763   3677777777


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecch
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKV  150 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n  150 (435)
                      ++++|+++.++    +..+++|+.|++++|.++.++      +..+++|+.|++++|
T Consensus       112 ~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          112 NCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLN  158 (457)
T ss_dssp             ECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTC
T ss_pred             ECCCCcCCeec----CCCCCcCCEEECCCCccceec------cccCCcCCEEECCCC
Confidence            77777776643    466777777777777776653      134445555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.49  E-value=1.9e-14  Score=151.27  Aligned_cols=152  Identities=13%  Similarity=0.117  Sum_probs=107.2

Q ss_pred             CCCCcceEEEecCCCcccccc--cccCCCCCCEEEccCCCCC-CcCCCCCCCCCCEEEccCCccccccchhhcCCCC-CC
Q psy18204         16 TNPVKDRELDLRGYKIPVIEN--MGATLDQFDTIDFSNNDIR-KIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPN-LE   91 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~~--~~~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~-L~   91 (435)
                      ..+++|+.|++++|.++.+|.  .+..+++|+.|++++|.++ .++.+..+++|+.|++++|+++.+|..+ ..+++ |+
T Consensus       302 ~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l-~~l~~~L~  380 (636)
T 4eco_A          302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANF-CGFTEQVE  380 (636)
T ss_dssp             GGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTS-EEECTTCC
T ss_pred             ccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhh-hhhcccCc
Confidence            344788888888888888887  7778888888888888888 6777777888888888888888877665 67777 88


Q ss_pred             eeecCCCcCCCCCCCCCCCCC--CCCCEEEeecCCccccccchHHHHh-------cCCccceeeecchhHHHHhhh----
Q psy18204         92 TLILTGNNIQELGDLDPLSTL--PKLKTLCLLHNPVINRPHYRLYVAF-------KLPQVKLLDFSKVKLKALMNV----  158 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~~~l~~l--~~L~~L~L~~N~i~~~~~~~~~~~~-------~l~~L~~Ldl~~n~l~~l~~~----  158 (435)
                      +|++++|.++.++.  .+..+  ++|+.|++++|.++.....   .+.       .+++|+.|++++|+++.+...    
T Consensus       381 ~L~Ls~N~l~~lp~--~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~  455 (636)
T 4eco_A          381 NLSFAHNKLKYIPN--IFDAKSVSVMSAIDFSYNEIGSVDGK---NFDPLDPTPFKGINVSSINLSNNQISKFPKELFST  455 (636)
T ss_dssp             EEECCSSCCSSCCS--CCCTTCSSCEEEEECCSSCTTTTTTC---SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred             EEEccCCcCcccch--hhhhcccCccCEEECcCCcCCCcchh---hhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence            88888888887765  34433  3677777777777643211   112       455677777777776544322    


Q ss_pred             -hcccEEEEecCCCcc
Q psy18204        159 -MFGTEIILSGDSIDA  173 (435)
Q Consensus       159 -~~~~~l~lsgn~i~~  173 (435)
                       .....+.+++|.+..
T Consensus       456 l~~L~~L~Ls~N~l~~  471 (636)
T 4eco_A          456 GSPLSSINLMGNMLTE  471 (636)
T ss_dssp             TCCCSEEECCSSCCSB
T ss_pred             CCCCCEEECCCCCCCC
Confidence             233667777766653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.49  E-value=1.2e-13  Score=139.53  Aligned_cols=151  Identities=19%  Similarity=0.221  Sum_probs=114.1

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      ..+.++++|+.|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+++  +..+++|+.
T Consensus       193 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  269 (466)
T 1o6v_A          193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE  269 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence            346677888888888888887655 45578888888888888888777788888888888888887755  477888888


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEecC
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSGD  169 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsgn  169 (435)
                      |++++|.++.++.   +..+++|+.|++++|.++.++.     +..+++|+.|++++|.++...   .......+.+++|
T Consensus       270 L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          270 LKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN  341 (466)
T ss_dssp             EECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence            8888888877653   6678888888888888877654     467788888888888776543   2333477777777


Q ss_pred             CCccc
Q psy18204        170 SIDAG  174 (435)
Q Consensus       170 ~i~~~  174 (435)
                      .+...
T Consensus       342 ~l~~~  346 (466)
T 1o6v_A          342 KVSDV  346 (466)
T ss_dssp             CCCCC
T ss_pred             ccCCc
Confidence            76644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.49  E-value=1.5e-13  Score=138.56  Aligned_cols=148  Identities=14%  Similarity=0.157  Sum_probs=99.3

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      +.+.++++|+.|++++|.++.++  ++.+++|+.|++++|.|++++ ++.+++|++|++++|+++.++   ++.+++|++
T Consensus        58 ~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~  131 (457)
T 3bz5_A           58 TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTY  131 (457)
T ss_dssp             TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCE
T ss_pred             hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCE
Confidence            35777888999999999988876  667888999999999888875 788888899999988888874   478888888


Q ss_pred             eecCCCcCCCCCCCC-------------------CCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         93 LILTGNNIQELGDLD-------------------PLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~-------------------~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |++++|+++.++ +.                   .+..+++|+.|++++|.++.++      +..+++|+.|++++|.++
T Consensus       132 L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~------l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          132 LNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD------VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             EECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC------CTTCTTCCEEECCSSCCS
T ss_pred             EECCCCccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec------cccCCCCCEEECcCCcCC
Confidence            888888887753 10                   1233444445555555544443      134555555555555554


Q ss_pred             HH--hhhhcccEEEEecCCCcc
Q psy18204        154 AL--MNVMFGTEIILSGDSIDA  173 (435)
Q Consensus       154 ~l--~~~~~~~~l~lsgn~i~~  173 (435)
                      .+  ........+++++|.+..
T Consensus       205 ~~~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          205 KLDLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CCCCTTCTTCSEEECCSSCCSC
T ss_pred             eeccccCCCCCEEECcCCcccc
Confidence            33  112223555666655544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=1.4e-13  Score=141.84  Aligned_cols=142  Identities=17%  Similarity=0.199  Sum_probs=92.6

Q ss_pred             CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      .+++|+.|++++|.|+.+|. +..  +|+.|+|++|.|+.++.  .+++|+.|++++|.|+.+|.    .+++|+.|+|+
T Consensus        98 ~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls  168 (571)
T 3cvr_A           98 LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVR  168 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred             ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECC
Confidence            46788888888888888777 433  78888888888877766  56777888888888777765    45677777777


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh----hcccEEEEecCCCc
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV----MFGTEIILSGDSID  172 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~----~~~~~l~lsgn~i~  172 (435)
                      +|+|+.++.   +.  ++|+.|+|++|.|+.+|.....+....+.|+.|++++|+++.+...    .....+++++|.+.
T Consensus       169 ~N~L~~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          169 NNQLTFLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             SSCCSCCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             CCCCCCcch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence            777777664   22  6777777777777766652110111122337777777776654332    23366777777665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.48  E-value=9.5e-14  Score=143.68  Aligned_cols=145  Identities=19%  Similarity=0.243  Sum_probs=66.3

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccc--hhhcCCCCCCeeec
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAE--NLQENLPNLETLIL   95 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~--~~~~~l~~L~~L~L   95 (435)
                      +|+.|++++|.+..++. ...+++|+.|++++|.+++. + .+..+++|+.|++++|+++.++.  ..++.+++|++|++
T Consensus       332 ~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l  410 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV  410 (562)
T ss_dssp             CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred             cceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence            45555555555443321 12344555555555555442 1 34555555555555555554432  22345555555555


Q ss_pred             CCCcCCC-CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC-CccceeeecchhHHHHhhhh----cccEEEEecC
Q psy18204         96 TGNNIQE-LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL-PQVKLLDFSKVKLKALMNVM----FGTEIILSGD  169 (435)
Q Consensus        96 s~N~i~~-l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l-~~L~~Ldl~~n~l~~l~~~~----~~~~l~lsgn  169 (435)
                      ++|+++. ++. ..+..+++|+.|++++|.++....      ..+ ++|+.|++++|+++.+....    ....+++++|
T Consensus       411 ~~N~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~------~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          411 SLNSLNSHAYD-RTCAWAESILVLNLSSNMLTGSVF------RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             TTSCCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGG------SSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred             CCCcCCCccCh-hhhcCcccCCEEECCCCCCCcchh------hhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence            5555544 332 234445555555555555442111      112 34555555555544332221    2244555555


Q ss_pred             CCc
Q psy18204        170 SID  172 (435)
Q Consensus       170 ~i~  172 (435)
                      .+.
T Consensus       484 ~l~  486 (562)
T 3a79_B          484 QLK  486 (562)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=141.27  Aligned_cols=105  Identities=23%  Similarity=0.240  Sum_probs=49.7

Q ss_pred             CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ++|++|++++|.++.++ ..+..+++|++|+|++|.|+++.  .|..+++|++|++++|+|+.+|..   .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence            34555555555554443 33444455555555555554441  344455555555555555544433   4455555555


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCcc
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVI  126 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~  126 (435)
                      ++|+++.++....++.+++|++|++++|.++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccc
Confidence            5555544321124444555555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=1.7e-16  Score=141.68  Aligned_cols=130  Identities=22%  Similarity=0.257  Sum_probs=96.7

Q ss_pred             cceEEEecCC--CcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         20 KDRELDLRGY--KIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        20 ~L~~L~L~~n--~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      .++.+.+.++  .++.+|..+..+++|+.|++++|.|+.++.+..+++|+.|++++|.|+.++... ..+++|++|+|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISY  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcC
Confidence            3444555443  344555567778888888888888888887777888888888888888886544 6678888888888


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      |+|+.++   .+..+++|+.|++++|.++.++..  ..+..+++|+.|++++|.+...
T Consensus       103 N~l~~l~---~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          103 NQIASLS---GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EECCCHH---HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHHHHH
T ss_pred             CcCCcCC---ccccCCCCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCccccc
Confidence            8888765   466778888888888888876542  2457788888888888888654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.46  E-value=2e-13  Score=146.44  Aligned_cols=178  Identities=19%  Similarity=0.118  Sum_probs=135.8

Q ss_pred             ccccCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      +..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. + .+..+++|+.|++++|+++...+..++.++
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            456778899999999999998 7888888899999999999999854 4 688999999999999999955455558999


Q ss_pred             CCCeeecCCCcCC-CCCCCCCCCCCCCCCEEEeecCCcc-ccccchHH--------------------------------
Q psy18204         89 NLETLILTGNNIQ-ELGDLDPLSTLPKLKTLCLLHNPVI-NRPHYRLY--------------------------------  134 (435)
Q Consensus        89 ~L~~L~Ls~N~i~-~l~~~~~l~~l~~L~~L~L~~N~i~-~~~~~~~~--------------------------------  134 (435)
                      +|+.|+|++|+++ .++.  .+..+++|+.|++++|+++ .+|.....                                
T Consensus       515 ~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             TCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             CCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence            9999999999997 4443  7888999999999999887 44432100                                


Q ss_pred             ----------------------------------HHhcCCccceeeecchhHHH-----HhhhhcccEEEEecCCCccc-
Q psy18204        135 ----------------------------------VAFKLPQVKLLDFSKVKLKA-----LMNVMFGTEIILSGDSIDAG-  174 (435)
Q Consensus       135 ----------------------------------~~~~l~~L~~Ldl~~n~l~~-----l~~~~~~~~l~lsgn~i~~~-  174 (435)
                                                        .+..+++|+.||+++|+++.     +........+++++|.+.+. 
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  672 (768)
T 3rgz_A          593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI  672 (768)
T ss_dssp             EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence                                              12235778899999998863     23344457888888888743 


Q ss_pred             ccceeecCCccccccch
Q psy18204        175 DQALFIMNHRTRLDWNF  191 (435)
Q Consensus       175 ~~~~~i~nh~~~lD~l~  191 (435)
                      +..+.-...+..+|...
T Consensus       673 p~~l~~L~~L~~LdLs~  689 (768)
T 3rgz_A          673 PDEVGDLRGLNILDLSS  689 (768)
T ss_dssp             CGGGGGCTTCCEEECCS
T ss_pred             ChHHhCCCCCCEEECCC
Confidence            33444455555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.45  E-value=3.2e-13  Score=146.40  Aligned_cols=154  Identities=19%  Similarity=0.100  Sum_probs=119.6

Q ss_pred             CCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCC-CCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         17 NPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNND-IRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      -+++++.|+|++|.|+.+ +..+..+++|+.|+|++|. +..++  .|.++++|++|+|++|+|+.+++..++++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            467899999999999866 4678889999999999994 44553  6899999999999999999887777799999999


Q ss_pred             eecCCCcCCC-CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH-----hhh--hcccEE
Q psy18204         93 LILTGNNIQE-LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL-----MNV--MFGTEI  164 (435)
Q Consensus        93 L~Ls~N~i~~-l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l-----~~~--~~~~~l  164 (435)
                      |+|++|.+++ ++.-..+..+++|+.|+|++|.++.++...  .+..+++|+.|++++|.++..     ...  .....+
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP--SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG--GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch--hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence            9999999976 333234888999999999999998664311  357899999999999987542     111  334566


Q ss_pred             EEecCCCc
Q psy18204        165 ILSGDSID  172 (435)
Q Consensus       165 ~lsgn~i~  172 (435)
                      .+++|.+.
T Consensus       180 ~L~~n~l~  187 (844)
T 3j0a_A          180 SLAANSLY  187 (844)
T ss_dssp             EECCSBSC
T ss_pred             ECCCCccc
Confidence            66666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.45  E-value=3.4e-13  Score=146.23  Aligned_cols=90  Identities=22%  Similarity=0.263  Sum_probs=61.9

Q ss_pred             ccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      .|.++++|+.|+|++|.++.+ +..+..+++|+.|+|++|.++.+.  .|..+++|+.|++++|.|+.+++..|..+++|
T Consensus       285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  364 (844)
T 3j0a_A          285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL  364 (844)
T ss_dssp             CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred             hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence            455667777777777777654 345666777777777777776663  56677777777777777777766666667777


Q ss_pred             CeeecCCCcCCCC
Q psy18204         91 ETLILTGNNIQEL  103 (435)
Q Consensus        91 ~~L~Ls~N~i~~l  103 (435)
                      ++|+|++|.++.+
T Consensus       365 ~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          365 QTLDLRDNALTTI  377 (844)
T ss_dssp             CEEEEETCCSCCC
T ss_pred             CEEECCCCCCCcc
Confidence            7777777766543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=2.3e-14  Score=152.53  Aligned_cols=116  Identities=18%  Similarity=0.151  Sum_probs=102.2

Q ss_pred             ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      +..+.++.+|+.|+|++|.+..++..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+|..+ +.|++|
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L  295 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSCFQL  295 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGGTTC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCCCCC
Confidence            44678889999999999999999976668999999999999999887 6899999999999999999997776 899999


Q ss_pred             CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204         91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      ++|+|++|.|+.++.  .+..+++|+.|+|++|+++..+.
T Consensus       296 ~~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             SEEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHHH
T ss_pred             CEEECCCCCCCccCh--hhhcCCCccEEeCCCCccCCCCh
Confidence            999999999999986  69999999999999999985443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=8.7e-14  Score=120.47  Aligned_cols=118  Identities=20%  Similarity=0.192  Sum_probs=101.5

Q ss_pred             ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCC-cCC-CCCCCCCCEEEccCCccccccc-hhhcCCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK-IDG-FPLLKRLSCLFFNNNRIVRIAE-NLQENLP   88 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L~ls~N~i~~i~~-~~~~~l~   88 (435)
                      +..+.++++|+.|++++|.++.+ ..+..+++|+.|++++|.++. ++. +..+++|+.|++++|.|+.++. ..+..++
T Consensus        42 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  120 (168)
T 2ell_A           42 EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE  120 (168)
T ss_dssp             SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred             HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence            33457788999999999999988 667789999999999999998 553 4569999999999999999863 4558999


Q ss_pred             CCCeeecCCCcCCCCCCC--CCCCCCCCCCEEEeecCCcccccc
Q psy18204         89 NLETLILTGNNIQELGDL--DPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus        89 ~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      +|+.|++++|.++.++..  ..+..+++|+.|++++|.+..+|.
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            999999999999988741  257889999999999999988775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=4e-13  Score=116.77  Aligned_cols=105  Identities=20%  Similarity=0.292  Sum_probs=93.9

Q ss_pred             CCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEee
Q psy18204         43 QFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLL  121 (435)
Q Consensus        43 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~  121 (435)
                      ..+.|++++|.++.++ .+.  ++|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.++. ..+..+++|+.|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECC
Confidence            3579999999999998 453  789999999999999988878999999999999999999886 467899999999999


Q ss_pred             cCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204        122 HNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       122 ~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +|.++.++..   .+..+++|+.|++++|.+.
T Consensus        87 ~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRG---AFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTT---TTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHH---HhcCCCCCCEEEeCCCCCC
Confidence            9999988874   3578999999999999775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=5.6e-13  Score=116.33  Aligned_cols=104  Identities=19%  Similarity=0.297  Sum_probs=93.4

Q ss_pred             CCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeec
Q psy18204         44 FDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH  122 (435)
Q Consensus        44 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~  122 (435)
                      -+.+++++|.++.+| .+.  ++|+.|+|++|+|+.+++..++.+++|+.|+|++|+|+.++. ..+..+++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCC
Confidence            478999999999998 454  889999999999999988888999999999999999999886 3678999999999999


Q ss_pred             CCccccccchHHHHhcCCccceeeecchhHH
Q psy18204        123 NPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       123 N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |.|+.++..   .+..+++|+.|++++|.+.
T Consensus        91 N~l~~l~~~---~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRG---AFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTT---TTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHH---HhccccCCCEEEeCCCCcc
Confidence            999988874   3578999999999999876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.42  E-value=7.6e-13  Score=133.28  Aligned_cols=140  Identities=18%  Similarity=0.225  Sum_probs=94.7

Q ss_pred             CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      ++|++|++++|.++.+|. ++.+++|+.|++++|.+++++..  ..+|++|++++|+++.++ . ++.+++|+.|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcc-cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCC
Confidence            577888888888877773 66778888888888888776643  247788888888877775 3 367777777777777


Q ss_pred             cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-hcccEEEEecCCCcc
Q psy18204         99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-MFGTEIILSGDSIDA  173 (435)
Q Consensus        99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-~~~~~l~lsgn~i~~  173 (435)
                      +++.++..     .++|+.|++++|.++.+|.     +..+++|+.|++++|+++.+... .....+++++|.+..
T Consensus       206 ~l~~l~~~-----~~~L~~L~l~~n~l~~lp~-----~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          206 SLKKLPDL-----PLSLESIVAGNNILEELPE-----LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCCC-----CTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC
T ss_pred             cCCcCCCC-----cCcccEEECcCCcCCcccc-----cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc
Confidence            77766542     2467777777777776664     35667777777777766654322 233566666666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.41  E-value=2e-12  Score=134.73  Aligned_cols=57  Identities=14%  Similarity=0.162  Sum_probs=33.2

Q ss_pred             CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc
Q psy18204         19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA   80 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~   80 (435)
                      ++|+.|++++|.|+.+|.   .+++|+.|+|++|.|+.++.  .+++|+.|++++|.|+.++
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~  117 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLP  117 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCC
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCC
Confidence            456666666666666655   34566666666666665554  4455555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.39  E-value=8.3e-14  Score=143.96  Aligned_cols=133  Identities=17%  Similarity=0.244  Sum_probs=108.0

Q ss_pred             cCCCCcceEEE-ecCCCcccccc------ccc--CCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhc
Q psy18204         15 YTNPVKDRELD-LRGYKIPVIEN------MGA--TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQE   85 (435)
Q Consensus        15 ~~~~~~L~~L~-L~~n~i~~i~~------~~~--~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~   85 (435)
                      +.++++|+.|+ ++.|.+..++.      .+.  ....|+.|+|++|.|++++.++.+++|+.|+|++|+|+.+|..+ +
T Consensus       405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~-~  483 (567)
T 1dce_A          405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL-A  483 (567)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGG-G
T ss_pred             HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhh-h
Confidence            34455666666 45554433321      000  12358999999999999999999999999999999999998766 8


Q ss_pred             CCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc--ccchHHHHhcCCccceeeecchhHHHH
Q psy18204         86 NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR--PHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        86 ~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~--~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      .+++|+.|+|++|+|+.++   .+..+++|+.|+|++|.++.+  |.    .+..+++|+.|++++|+++..
T Consensus       484 ~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~Ls~N~l~~~~~p~----~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          484 ALRCLEVLQASDNALENVD---GVANLPRLQELLLCNNRLQQSAAIQ----PLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             GCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSSCCCSSSTTG----GGGGCTTCCEEECTTSGGGGS
T ss_pred             cCCCCCEEECCCCCCCCCc---ccCCCCCCcEEECCCCCCCCCCCcH----HHhcCCCCCEEEecCCcCCCC
Confidence            9999999999999999876   678999999999999999988  55    468999999999999999843

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.38  E-value=2e-12  Score=130.24  Aligned_cols=138  Identities=18%  Similarity=0.250  Sum_probs=100.4

Q ss_pred             CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204         19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN   98 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (435)
                      .+|+.|++++|.++.++..   .++|++|++++|.+++++.++.+++|++|++++|+++.+|..    .++|++|++++|
T Consensus       111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n  183 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN  183 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS
T ss_pred             CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC
Confidence            3455555555555544432   257888888888888888888888888888888888887643    358888888888


Q ss_pred             cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCCcc
Q psy18204         99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSIDA  173 (435)
Q Consensus        99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i~~  173 (435)
                      +++.++   .+..+++|+.|++++|.++.+|..       .++|+.|++++|.++.+..   ......+.+++|.+..
T Consensus       184 ~l~~l~---~~~~l~~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          184 QLEELP---ELQNLPFLTAIYADNNSLKKLPDL-------PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCSSCC---CCTTCTTCCEEECCSSCCSSCCCC-------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cCCcCc---cccCCCCCCEEECCCCcCCcCCCC-------cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence            888765   467888888888888888877652       3578888888888765432   2334788888887764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=3.8e-13  Score=117.47  Aligned_cols=113  Identities=19%  Similarity=0.270  Sum_probs=97.1

Q ss_pred             ccCCCCCCEEEccCCCCCCcCCCCCCC-CCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCC
Q psy18204         38 GATLDQFDTIDFSNNDIRKIDGFPLLK-RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLK  116 (435)
Q Consensus        38 ~~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~  116 (435)
                      +..+.+|+.|++++|.++.++.+..+. +|+.|++++|.|+.+ +.+ +.+++|++|+|++|+|+.++. ..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRICRIGE-GLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCCEECS-CHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCcccccCc-chhhcCCCCC
Confidence            346889999999999999998776666 999999999999998 444 899999999999999998875 2458899999


Q ss_pred             EEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204        117 TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus       117 ~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      .|+|++|.++.++...  .+..+++|+.|++++|.++.+
T Consensus        92 ~L~L~~N~i~~~~~~~--~l~~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           92 ELILTNNSLVELGDLD--PLASLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             EEECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGGGGS
T ss_pred             EEECCCCcCCcchhhH--hhhcCCCCCEEEecCCCCCCc
Confidence            9999999999887621  357899999999999998743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.38  E-value=1.5e-12  Score=135.73  Aligned_cols=133  Identities=16%  Similarity=0.203  Sum_probs=105.4

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN   99 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (435)
                      +++.|++++|.++.+|..+.  ++|+.|+|++|.|+.++.  .+++|++|+|++|+|+.+|.    .+++|++|+|++|+
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCc
Confidence            58999999999999997654  799999999999999886  57899999999999999976    67899999999999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-hcccEEEEecCCCc
Q psy18204        100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-MFGTEIILSGDSID  172 (435)
Q Consensus       100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-~~~~~l~lsgn~i~  172 (435)
                      |+.++.     .+++|+.|++++|.++.+|..       +++|+.|++++|+++.+... .....+.+++|.+.
T Consensus       113 l~~l~~-----~l~~L~~L~L~~N~l~~lp~~-------l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          113 LTHLPA-----LPSGLCKLWIFGNQLTSLPVL-------PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT  174 (622)
T ss_dssp             CCCCCC-----CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCCCC-----CCCCcCEEECCCCCCCcCCCC-------CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCC
Confidence            988774     467788888888888877752       47788888888877654221 12245555555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=5e-13  Score=113.22  Aligned_cols=110  Identities=22%  Similarity=0.200  Sum_probs=93.4

Q ss_pred             CCCCCCEEEccCCCCC--CcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCC-CCCCCCCCCCCCC
Q psy18204         40 TLDQFDTIDFSNNDIR--KID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE-LGDLDPLSTLPKL  115 (435)
Q Consensus        40 ~l~~L~~L~Ls~N~l~--~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-l~~~~~l~~l~~L  115 (435)
                      ..++|+.|++++|.++  .++ .+..+++|+.|++++|.++.+  ..++.+++|++|+|++|.++. ++.  .+..+++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV--LAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH--HHHHCTTC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH--HhhhCCCC
Confidence            3578999999999998  666 578999999999999999998  444899999999999999988 443  55669999


Q ss_pred             CEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204        116 KTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus       116 ~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      +.|++++|.++.++..  ..+..+++|+.|++++|.++.+
T Consensus        91 ~~L~ls~N~i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           91 THLNLSGNKIKDLSTI--EPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             CEEECTTSCCCSHHHH--GGGGGCTTCCEEECTTCGGGGS
T ss_pred             CEEECCCCcCCChHHH--HHHhhCCCCCEEeCcCCcccch
Confidence            9999999999986521  1468899999999999998854

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=1.4e-14  Score=129.18  Aligned_cols=135  Identities=28%  Similarity=0.454  Sum_probs=111.9

Q ss_pred             ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC-CCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      .+.++++|++|++++|.++.+| .+..+++|+.|++++|.|+.++. +..+++|+.|++++|+|+.++ .+ ..+++|+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccCCCCCE
Confidence            5667889999999999999988 66678999999999999998874 455689999999999999986 44 78899999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc-------ccchHHHHhcCCccceeeecchhHH
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR-------PHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~-------~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |++++|+|+.++.+..+..+++|+.|++++|+++..       ..++...+..+++|+.||  +|.++
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999999998876544678899999999999998755       345555678899999988  45544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=1.1e-13  Score=136.26  Aligned_cols=161  Identities=16%  Similarity=0.122  Sum_probs=97.7

Q ss_pred             cccCCCCcceEEEecCCCcccc----ccc-------ccCCCCCCEEEccCCCCCC-----cC-CCCCCCCCCEEEccCCc
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVI----ENM-------GATLDQFDTIDFSNNDIRK-----ID-GFPLLKRLSCLFFNNNR   75 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i----~~~-------~~~l~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~ls~N~   75 (435)
                      ..+.++++|+.|+|++|.+..+    |..       +..+++|+.|+|++|.|+.     ++ .+..+++|++|+|++|.
T Consensus        54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            3466777888888888755533    321       3567888888888888876     22 45677788888888888


Q ss_pred             cccccchhh----cCC---------CCCCeeecCCCcCCCCCCC---CCCCCCCCCCEEEeecCCccccc--cchHHHHh
Q psy18204         76 IVRIAENLQ----ENL---------PNLETLILTGNNIQELGDL---DPLSTLPKLKTLCLLHNPVINRP--HYRLYVAF  137 (435)
Q Consensus        76 i~~i~~~~~----~~l---------~~L~~L~Ls~N~i~~l~~~---~~l~~l~~L~~L~L~~N~i~~~~--~~~~~~~~  137 (435)
                      |+......+    ..+         ++|++|+|++|+++.....   ..+..+++|+.|+|++|.++...  ......+.
T Consensus       134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~  213 (386)
T 2ca6_A          134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  213 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence            764332211    223         7788888888877632210   13456677777777777776211  00000245


Q ss_pred             cCCccceeeecchhHH-----HHh----hhhcccEEEEecCCCcc
Q psy18204        138 KLPQVKLLDFSKVKLK-----ALM----NVMFGTEIILSGDSIDA  173 (435)
Q Consensus       138 ~l~~L~~Ldl~~n~l~-----~l~----~~~~~~~l~lsgn~i~~  173 (435)
                      .+++|+.|++++|.++     .+.    .......+.+++|.+..
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            6777777777777763     222    22334677777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.34  E-value=1.3e-12  Score=126.93  Aligned_cols=137  Identities=22%  Similarity=0.253  Sum_probs=102.0

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCC-cC--CCCCCCCCCE-EEccCCccccccchhhcCCCCCCe
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRK-ID--GFPLLKRLSC-LFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~-L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      +.++++|+|++|+|+.|| +.+..+++|+.|+|++|.+.+ ++  .|.++++|.. +.+++|+|+.+++..|..+++|++
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            357899999999999888 467889999999999999854 44  5788888765 667779999998888889999999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeec-CCccccccchHHHHhcC-CccceeeecchhHHHHhhh
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLH-NPVINRPHYRLYVAFKL-PQVKLLDFSKVKLKALMNV  158 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~l-~~L~~Ldl~~n~l~~l~~~  158 (435)
                      |++++|+|+.+++. .+....++..|++.+ |.+..++...   +..+ ..++.|++++|+++.+...
T Consensus       109 L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~---f~~~~~~l~~L~L~~N~i~~i~~~  172 (350)
T 4ay9_X          109 LLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNS---FVGLSFESVILWLNKNGIQEIHNS  172 (350)
T ss_dssp             EEEEEECCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTS---STTSBSSCEEEECCSSCCCEECTT
T ss_pred             ccccccccccCCch-hhcccchhhhhhhccccccccccccc---hhhcchhhhhhccccccccCCChh
Confidence            99999999887763 444555667777755 4566655431   2233 3577777888777665443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=8.2e-12  Score=120.96  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=93.9

Q ss_pred             eEEEecCC-CcccccccccCCCCCCEEEccC-CCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         22 RELDLRGY-KIPVIENMGATLDQFDTIDFSN-NDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        22 ~~L~L~~n-~i~~i~~~~~~l~~L~~L~Ls~-N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      ..++++++ .++.||. +..+++|+.|+|++ |.|+.++  .|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            46799998 8999999 88899999999996 9999997  599999999999999999999998889999999999999


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      |+|+.++. ..+..++ |+.|+|.+|++.....
T Consensus        90 N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSW-KTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence            99999886 3555555 9999999999985443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.31  E-value=2.7e-12  Score=124.75  Aligned_cols=151  Identities=19%  Similarity=0.246  Sum_probs=119.9

Q ss_pred             ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccc-cccchhhcCCCCCCe-eecC
Q psy18204         21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIV-RIAENLQENLPNLET-LILT   96 (435)
Q Consensus        21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~~~~~~~l~~L~~-L~Ls   96 (435)
                      -+.++.++++++.||..+  ..+++.|+|++|.|+.++  .|.++++|++|+|++|++. .++...|.++++|.+ +.++
T Consensus        11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            367899999999999654  468999999999999997  5899999999999999985 577788899998875 6677


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecc-hhHHHHhhhh------cccEEEEecC
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK-VKLKALMNVM------FGTEIILSGD  169 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~-n~l~~l~~~~------~~~~l~lsgn  169 (435)
                      +|+|+.+++ +.+..+++|+.|++++|.++.++...   .....++..|++.+ +.+..+....      ....+.+++|
T Consensus        89 ~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           89 ANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDVH---KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             ETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCCT---TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred             CCcccccCc-hhhhhccccccccccccccccCCchh---hcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence            899999876 48899999999999999999887752   34566788888865 5565543322      2356788888


Q ss_pred             CCcccccc
Q psy18204        170 SIDAGDQA  177 (435)
Q Consensus       170 ~i~~~~~~  177 (435)
                      .+......
T Consensus       165 ~i~~i~~~  172 (350)
T 4ay9_X          165 GIQEIHNS  172 (350)
T ss_dssp             CCCEECTT
T ss_pred             cccCCChh
Confidence            87654433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=6.4e-13  Score=130.81  Aligned_cols=163  Identities=14%  Similarity=0.136  Sum_probs=122.0

Q ss_pred             HHhcccccCCCCcceEEEecCCCccc-----ccccccCCCCCCEEEccCCCCCCcC-----C-------CCCCCCCCEEE
Q psy18204          8 LIVQCMQYTNPVKDRELDLRGYKIPV-----IENMGATLDQFDTIDFSNNDIRKID-----G-------FPLLKRLSCLF   70 (435)
Q Consensus         8 ~i~~~~~~~~~~~L~~L~L~~n~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~-----~-------l~~l~~L~~L~   70 (435)
                      +...+..+..+++|+.|+|++|.|+.     +...+..+++|+.|+|++|.+..+.     +       +..+++|++|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            34444566678899999999999884     3345678999999999998776542     2       37889999999


Q ss_pred             ccCCcccc-----ccchhhcCCCCCCeeecCCCcCCCCCCC---CCCCCC---------CCCCEEEeecCCccc--cccc
Q psy18204         71 FNNNRIVR-----IAENLQENLPNLETLILTGNNIQELGDL---DPLSTL---------PKLKTLCLLHNPVIN--RPHY  131 (435)
Q Consensus        71 ls~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~l~~~---~~l~~l---------~~L~~L~L~~N~i~~--~~~~  131 (435)
                      |++|.|+.     ++..+ ..+++|++|+|++|.|+.....   ..+..+         ++|++|+|++|.++.  ++..
T Consensus       101 Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  179 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  179 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             CCCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence            99999997     44444 7899999999999999643320   123333         899999999999973  3321


Q ss_pred             hHHHHhcCCccceeeecchhHHH-----H-----hhhhcccEEEEecCCCc
Q psy18204        132 RLYVAFKLPQVKLLDFSKVKLKA-----L-----MNVMFGTEIILSGDSID  172 (435)
Q Consensus       132 ~~~~~~~l~~L~~Ldl~~n~l~~-----l-----~~~~~~~~l~lsgn~i~  172 (435)
                       ...+..+++|+.|++++|.++.     +     ........+.+++|.+.
T Consensus       180 -~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          180 -AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             -HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             -HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence             1246789999999999999862     1     22334588999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=1.6e-12  Score=126.87  Aligned_cols=156  Identities=15%  Similarity=0.145  Sum_probs=91.5

Q ss_pred             CCcceEEEecCCCccccc-----ccccCCC-CCCEEEccCCCCCCcC--CCCCC-----CCCCEEEccCCccccccch--
Q psy18204         18 PVKDRELDLRGYKIPVIE-----NMGATLD-QFDTIDFSNNDIRKID--GFPLL-----KRLSCLFFNNNRIVRIAEN--   82 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-----~~~~~l~-~L~~L~Ls~N~l~~l~--~l~~l-----~~L~~L~ls~N~i~~i~~~--   82 (435)
                      +.+|++|+|++|.++.++     ..+..++ +|+.|+|++|.|+...  .+..+     ++|+.|+|++|.++..+..  
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            345777888887777654     3455566 7778888877776653  23332     6777777777777765443  


Q ss_pred             --hhcCC-CCCCeeecCCCcCCCCCCC---CCCCC-CCCCCEEEeecCCccccccch-HHHHhcCC-ccceeeecchhHH
Q psy18204         83 --LQENL-PNLETLILTGNNIQELGDL---DPLST-LPKLKTLCLLHNPVINRPHYR-LYVAFKLP-QVKLLDFSKVKLK  153 (435)
Q Consensus        83 --~~~~l-~~L~~L~Ls~N~i~~l~~~---~~l~~-l~~L~~L~L~~N~i~~~~~~~-~~~~~~l~-~L~~Ldl~~n~l~  153 (435)
                        .+..+ ++|++|+|++|+|+..+..   ..+.. .++|+.|+|++|.++...... ...+..++ +|+.|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence              12344 6777777777777665431   01233 246777777777776432211 11223444 6777777777664


Q ss_pred             HHh-----hh-----hcccEEEEecCCCcc
Q psy18204        154 ALM-----NV-----MFGTEIILSGDSIDA  173 (435)
Q Consensus       154 ~l~-----~~-----~~~~~l~lsgn~i~~  173 (435)
                      ...     ..     .....+++++|.+..
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            321     11     244667777766654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.27  E-value=6e-13  Score=128.19  Aligned_cols=169  Identities=17%  Similarity=0.093  Sum_probs=109.5

Q ss_pred             CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCC--cC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK--ID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      .+++.|++++|.+...+.....+++|+.|++++|.++.  ++ .+..+++|++|++++|.++......++.+++|++|+|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            57788888888887655444567888888888888764  33 4677788888888888887543444467888888888


Q ss_pred             CCC-cCCC--CCCCCCCCCCCCCCEEEeecC-CccccccchHHHHhcCC-ccceeeecchhH----HHH----hhhhccc
Q psy18204         96 TGN-NIQE--LGDLDPLSTLPKLKTLCLLHN-PVINRPHYRLYVAFKLP-QVKLLDFSKVKL----KAL----MNVMFGT  162 (435)
Q Consensus        96 s~N-~i~~--l~~~~~l~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~l~-~L~~Ldl~~n~l----~~l----~~~~~~~  162 (435)
                      ++| .+++  ++.  .+..+++|+.|++++| .++....  ...+..++ +|+.|++++|.+    ..+    .......
T Consensus       150 ~~~~~l~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~  225 (336)
T 2ast_B          150 SGCSGFSEFALQT--LLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  225 (336)
T ss_dssp             TTCBSCCHHHHHH--HHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             CCCCCCCHHHHHH--HHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence            888 5663  332  4566788888888888 7764210  12456778 888888888843    222    2233457


Q ss_pred             EEEEecCC-Ccc-cccceeecCCccccccch
Q psy18204        163 EIILSGDS-IDA-GDQALFIMNHRTRLDWNF  191 (435)
Q Consensus       163 ~l~lsgn~-i~~-~~~~~~i~nh~~~lD~l~  191 (435)
                      .+.++++. +.. ....+..+.++..++...
T Consensus       226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  256 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  256 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence            88888877 432 222333334455554433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=7.1e-13  Score=129.43  Aligned_cols=162  Identities=16%  Similarity=0.184  Sum_probs=116.9

Q ss_pred             cccCCCC-cceEEEecCCCccccc-ccccC----C-CCCCEEEccCCCCCCcC------CCCCC-CCCCEEEccCCcccc
Q psy18204         13 MQYTNPV-KDRELDLRGYKIPVIE-NMGAT----L-DQFDTIDFSNNDIRKID------GFPLL-KRLSCLFFNNNRIVR   78 (435)
Q Consensus        13 ~~~~~~~-~L~~L~L~~n~i~~i~-~~~~~----l-~~L~~L~Ls~N~l~~l~------~l~~l-~~L~~L~ls~N~i~~   78 (435)
                      ..+.+++ +|++|+|++|.|+... ..+..    . ++|+.|+|++|.++...      .+..+ ++|+.|++++|+|+.
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            3455666 8999999999998653 33332    2 89999999999998764      14555 799999999999998


Q ss_pred             ccchh----hcC-CCCCCeeecCCCcCCCCCCC---CCCCCCC-CCCEEEeecCCccccccchH-HHHhcC-Cccceeee
Q psy18204         79 IAENL----QEN-LPNLETLILTGNNIQELGDL---DPLSTLP-KLKTLCLLHNPVINRPHYRL-YVAFKL-PQVKLLDF  147 (435)
Q Consensus        79 i~~~~----~~~-l~~L~~L~Ls~N~i~~l~~~---~~l~~l~-~L~~L~L~~N~i~~~~~~~~-~~~~~l-~~L~~Ldl  147 (435)
                      .+...    +.. .++|++|+|++|.|++....   ..+..++ +|+.|+|++|.++....... ..+..+ ++|+.||+
T Consensus       124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L  203 (362)
T 3goz_A          124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL  203 (362)
T ss_dssp             SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence            76543    234 36999999999999864421   1234454 89999999999986654322 234556 59999999


Q ss_pred             cchhHHH-----Hhhh-----hcccEEEEecCCCccc
Q psy18204        148 SKVKLKA-----LMNV-----MFGTEIILSGDSIDAG  174 (435)
Q Consensus       148 ~~n~l~~-----l~~~-----~~~~~l~lsgn~i~~~  174 (435)
                      ++|.++.     +...     .....+++++|.+...
T Consensus       204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            9999876     3332     2457899999987643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=2.6e-12  Score=123.71  Aligned_cols=143  Identities=16%  Similarity=0.101  Sum_probs=78.2

Q ss_pred             cceEEEecCCCcccccccccCC--CCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccc-cchhhcCCCCCCeeec
Q psy18204         20 KDRELDLRGYKIPVIENMGATL--DQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRI-AENLQENLPNLETLIL   95 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l--~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i-~~~~~~~l~~L~~L~L   95 (435)
                      .++.+++++|.+.  +..+..+  .+++.|++++|.+.+.. .+..+++|+.|++++|.++.. .+..+..+++|++|+|
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            3566666666655  2222223  56666666666665553 455566666666666666532 2333356666666666


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecC-Cccc--cccchHHHHhcCCccceeeecch-hHHH------Hhhhh-cccEE
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHN-PVIN--RPHYRLYVAFKLPQVKLLDFSKV-KLKA------LMNVM-FGTEI  164 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N-~i~~--~~~~~~~~~~~l~~L~~Ldl~~n-~l~~------l~~~~-~~~~l  164 (435)
                      ++|.+++... ..+..+++|+.|++++| .++.  ++.    .+..+++|+.|++++| .++.      +.... ....+
T Consensus       126 ~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          126 EGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             TTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             cCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHHH----HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            6666553221 24555666666666666 4542  222    3455666666666666 4432      12222 44666


Q ss_pred             EEecC
Q psy18204        165 ILSGD  169 (435)
Q Consensus       165 ~lsgn  169 (435)
                      .++++
T Consensus       201 ~l~~~  205 (336)
T 2ast_B          201 NLSGY  205 (336)
T ss_dssp             ECCSC
T ss_pred             EeCCC
Confidence            66666

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=1.7e-11  Score=118.74  Aligned_cols=105  Identities=16%  Similarity=0.243  Sum_probs=92.4

Q ss_pred             CEEEccCC-CCCCcCCCCCCCCCCEEEccC-CccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeec
Q psy18204         45 DTIDFSNN-DIRKIDGFPLLKRLSCLFFNN-NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH  122 (435)
Q Consensus        45 ~~L~Ls~N-~l~~l~~l~~l~~L~~L~ls~-N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~  122 (435)
                      ..++++++ .|+.+|.++.+++|+.|+|++ |+|+.+++..|+++++|+.|+|++|+|+.+++ ..|.++++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCC
Confidence            45799998 999998899999999999996 99999998888999999999999999999876 4789999999999999


Q ss_pred             CCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204        123 NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus       123 N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      |.++.++..   .+..++ |+.|++++|.+.+
T Consensus        90 N~l~~~~~~---~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWK---TVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCST---TTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHH---HcccCC-ceEEEeeCCCccC
Confidence            999998874   233444 9999999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.21  E-value=1.7e-11  Score=118.05  Aligned_cols=70  Identities=11%  Similarity=0.115  Sum_probs=52.0

Q ss_pred             CCcceEEEecCCCcc--------------------ccc-ccccC--------CCCCCEEEccCCCCCCcC--CCCCCCCC
Q psy18204         18 PVKDRELDLRGYKIP--------------------VIE-NMGAT--------LDQFDTIDFSNNDIRKID--GFPLLKRL   66 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~--------------------~i~-~~~~~--------l~~L~~L~Ls~N~l~~l~--~l~~l~~L   66 (435)
                      +++|+.|+|++|+|.                    .|| ..|..        +++|+.|+|++ .++.++  .|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            678899999998888                    333 34556        88899999988 888886  58888899


Q ss_pred             CEEEccCCccccccchhhcCCC
Q psy18204         67 SCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        67 ~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      +.|++++|.++.|++..|.++.
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~  148 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSV  148 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTT
T ss_pred             ceEEcCCCCccccchhhhcCCC
Confidence            9999988887666655444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=2.6e-11  Score=116.66  Aligned_cols=129  Identities=16%  Similarity=0.104  Sum_probs=79.4

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCC--------------------------------
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPL--------------------------------   62 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~--------------------------------   62 (435)
                      +++|+.|+|++ .++.|+ ..|..|++|+.|++++|.++.++  .|..                                
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            88888888888 888777 56888888999999888775553  2333                                


Q ss_pred             ----------------------------------------------CCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         63 ----------------------------------------------LKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        63 ----------------------------------------------l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                                                                    +++|+.|++++|+++.|++..|.+|++|+.|+|.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                                                          4455555555555555555555555555555555


Q ss_pred             CCcCCCCCCCCCCCCCCCCC-EEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         97 GNNIQELGDLDPLSTLPKLK-TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~-~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +| ++.++. ..|.+|++|+ .+++.+ .++.++.+   .+..|++|+.++++.|.++
T Consensus       259 ~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          259 HN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTTEEEEEECSSCCC
T ss_pred             cc-cceehH-HHhhCChhccEEEEEcc-cceEEchh---hhhCCccCCEEEeCCCccC
Confidence            55 555554 3555555555 555555 45555443   3455555555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.08  E-value=1.7e-11  Score=123.19  Aligned_cols=173  Identities=16%  Similarity=0.168  Sum_probs=119.1

Q ss_pred             CCCcceEEEecCCCccc-----ccccccCCCCCCEEEccCCCCCCcC------C-CCCCCCCCEEEccCCcccc-----c
Q psy18204         17 NPVKDRELDLRGYKIPV-----IENMGATLDQFDTIDFSNNDIRKID------G-FPLLKRLSCLFFNNNRIVR-----I   79 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~------~-l~~l~~L~~L~ls~N~i~~-----i   79 (435)
                      +.++|+.|++++|.++.     ++..+..+++|+.|++++|.++...      . +..+++|+.|++++|.|+.     +
T Consensus       197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  276 (461)
T 1z7x_W          197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  276 (461)
T ss_dssp             SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence            35689999999999885     4566667899999999999887642      2 3468899999999999987     4


Q ss_pred             cchhhcCCCCCCeeecCCCcCCCCCCC---CC-CCCCCCCCEEEeecCCccccccc-hHHHHhcCCccceeeecchhHHH
Q psy18204         80 AENLQENLPNLETLILTGNNIQELGDL---DP-LSTLPKLKTLCLLHNPVINRPHY-RLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        80 ~~~~~~~l~~L~~L~Ls~N~i~~l~~~---~~-l~~l~~L~~L~L~~N~i~~~~~~-~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      +..+ ..+++|++|+|++|.+++.+..   .. ....++|+.|++++|.++..... -...+..+++|+.||+++|.++.
T Consensus       277 ~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          277 CRVL-RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHH-HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HHHH-hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            4443 6789999999999988643210   01 12346899999999998754321 11245678899999999998765


Q ss_pred             H-----hh-----hhcccEEEEecCCCcc-----cccceeecCCccccccc
Q psy18204        155 L-----MN-----VMFGTEIILSGDSIDA-----GDQALFIMNHRTRLDWN  190 (435)
Q Consensus       155 l-----~~-----~~~~~~l~lsgn~i~~-----~~~~~~i~nh~~~lD~l  190 (435)
                      .     ..     ......+++++|.+..     ....+....++..+|..
T Consensus       356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence            3     12     1245788888888763     12222334455555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.04  E-value=2.3e-11  Score=122.17  Aligned_cols=159  Identities=16%  Similarity=0.098  Sum_probs=117.3

Q ss_pred             ccCCCCcceEEEecCCCccccc--cc----ccCCCCCCEEEccCCCCCCc-----C-CCCCCCCCCEEEccCCcccccc-
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIE--NM----GATLDQFDTIDFSNNDIRKI-----D-GFPLLKRLSCLFFNNNRIVRIA-   80 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~--~~----~~~l~~L~~L~Ls~N~l~~l-----~-~l~~l~~L~~L~ls~N~i~~i~-   80 (435)
                      .+.++++|++|++++|.++...  ..    ....++|+.|++++|.++..     + .+..+++|+.|++++|.++... 
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            4456789999999999987432  11    12366999999999999873     2 4667899999999999998642 


Q ss_pred             ----chhhcCCCCCCeeecCCCcCCC-----CCCCCCCCCCCCCCEEEeecCCccccccchH--HHHhcCCccceeeecc
Q psy18204         81 ----ENLQENLPNLETLILTGNNIQE-----LGDLDPLSTLPKLKTLCLLHNPVINRPHYRL--YVAFKLPQVKLLDFSK  149 (435)
Q Consensus        81 ----~~~~~~l~~L~~L~Ls~N~i~~-----l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~l~~L~~Ldl~~  149 (435)
                          +.++..+++|++|++++|.++.     ++.  .+..+++|+.|++++|.++.......  ......++|+.|++++
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence                4454578999999999999987     343  56678999999999999875432111  0112336999999999


Q ss_pred             hhHHHH-----hh----hhcccEEEEecCCCccc
Q psy18204        150 VKLKAL-----MN----VMFGTEIILSGDSIDAG  174 (435)
Q Consensus       150 n~l~~l-----~~----~~~~~~l~lsgn~i~~~  174 (435)
                      |.++..     ..    ......+++++|.+...
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            987542     22    24558999999987643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.01  E-value=2.9e-11  Score=118.34  Aligned_cols=154  Identities=15%  Similarity=0.113  Sum_probs=98.2

Q ss_pred             CcceEEEecCCCccccc-----cccc-CCCCCCEEEccCCCCCCcC--CC-CCCCCCCEEEccCCccccccchhh-----
Q psy18204         19 VKDRELDLRGYKIPVIE-----NMGA-TLDQFDTIDFSNNDIRKID--GF-PLLKRLSCLFFNNNRIVRIAENLQ-----   84 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-----~~~~-~l~~L~~L~Ls~N~l~~l~--~l-~~l~~L~~L~ls~N~i~~i~~~~~-----   84 (435)
                      ++|+.|+|++|.|+...     ..+. ...+|+.|+|++|.|+...  .+ ..+++|+.|+|++|.|+......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            46788888888887432     2222 2367888888888886532  22 335678888888888875433221     


Q ss_pred             cCCCCCCeeecCCCcCCCCCC---CCCCCCCCCCCEEEeecCCccccccch-HHHHhcCCccceeeecchhHHHH-----
Q psy18204         85 ENLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLHNPVINRPHYR-LYVAFKLPQVKLLDFSKVKLKAL-----  155 (435)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~l~~L~~Ldl~~n~l~~l-----  155 (435)
                      ...++|++|+|++|.|++.+.   ...+..+++|++|+|++|.|+...... ...+..+++|+.||+++|.++..     
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            346778888888888765321   013356778888888888877532111 12345677888888888877542     


Q ss_pred             h----hhhcccEEEEecCCCc
Q psy18204        156 M----NVMFGTEIILSGDSID  172 (435)
Q Consensus       156 ~----~~~~~~~l~lsgn~i~  172 (435)
                      .    .......+++++|.+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            1    2234578888888775

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.94  E-value=6.4e-11  Score=115.94  Aligned_cols=139  Identities=13%  Similarity=0.096  Sum_probs=102.6

Q ss_pred             CCCcceEEEecCCCccc--ccccccCCCCCCEEEccCCCCCCcC--CC-----CCCCCCCEEEccCCccccccc----hh
Q psy18204         17 NPVKDRELDLRGYKIPV--IENMGATLDQFDTIDFSNNDIRKID--GF-----PLLKRLSCLFFNNNRIVRIAE----NL   83 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~--i~~~~~~l~~L~~L~Ls~N~l~~l~--~l-----~~l~~L~~L~ls~N~i~~i~~----~~   83 (435)
                      ++.+|++|+|++|.|+.  +......+.+|+.|+|++|.|+...  .+     ...++|+.|+|++|.|+....    ..
T Consensus        99 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A           99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            34689999999999874  3344445668999999999997653  22     356889999999999986332    12


Q ss_pred             hcCCCCCCeeecCCCcCCCCCC---CCCCCCCCCCCEEEeecCCccccccch-HHHHhcCCccceeeecchhHHHH
Q psy18204         84 QENLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLHNPVINRPHYR-LYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        84 ~~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      +..+++|++|+|++|.|++.+.   ...+..+++|+.|+|++|.|+...... ...+..+++|+.||+++|.++..
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            2678999999999999976431   124566789999999999998643221 12355779999999999998654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.84  E-value=2e-09  Score=99.72  Aligned_cols=103  Identities=27%  Similarity=0.378  Sum_probs=80.9

Q ss_pred             EEccCCCCCCcCC-----CCCCCCCCEEEccCCccccccc--hhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEE
Q psy18204         47 IDFSNNDIRKIDG-----FPLLKRLSCLFFNNNRIVRIAE--NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC  119 (435)
Q Consensus        47 L~Ls~N~l~~l~~-----l~~l~~L~~L~ls~N~i~~i~~--~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~  119 (435)
                      ++++.|....+++     ..++++|+.|+|++|+|+.++.  ..++.+++|+.|+|++|+|+++..++.+..+ +|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            4556665443331     1467899999999999998753  4557899999999999999988766666666 999999


Q ss_pred             eecCCccc-c---ccchHHHHhcCCccceeeecch
Q psy18204        120 LLHNPVIN-R---PHYRLYVAFKLPQVKLLDFSKV  150 (435)
Q Consensus       120 L~~N~i~~-~---~~~~~~~~~~l~~L~~Ldl~~n  150 (435)
                      |++|+++. +   +.|+..++..+|+|+.||-...
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v  261 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL  261 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence            99999984 3   3677778999999999996544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.81  E-value=1.5e-08  Score=99.97  Aligned_cols=122  Identities=11%  Similarity=0.176  Sum_probs=59.8

Q ss_pred             cceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         20 KDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      +|+.+.+.+ .+..|+ ..|..|.+|+.++|++|.++.++  .|. +++|+.+.+.+ .++.|+...|.+|++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence            455555553 444443 34445555555555555555443  232 34455555542 2444444444455555554444


Q ss_pred             C---------------------CcCCCCCCCCCCCCCCCCCEEEeecCCcc-----ccccchHHHHhcCCccceeeec
Q psy18204         97 G---------------------NNIQELGDLDPLSTLPKLKTLCLLHNPVI-----NRPHYRLYVAFKLPQVKLLDFS  148 (435)
Q Consensus        97 ~---------------------N~i~~l~~~~~l~~l~~L~~L~L~~N~i~-----~~~~~~~~~~~~l~~L~~Ldl~  148 (435)
                      +                     |.++.++. ..|.+|++|+.+.+.+|.+.     .++.+   .+..|++|+.+++.
T Consensus       235 ~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          235 ENVSTIGQEAFRESGITTVKLPNGVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIP  308 (401)
T ss_dssp             TTCCEECTTTTTTCCCSEEEEETTCCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCC
T ss_pred             CCccCccccccccCCccEEEeCCCccEECh-hHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeC
Confidence            3                     23444443 25556666666666555543     33333   34555666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.72  E-value=2.3e-08  Score=98.71  Aligned_cols=146  Identities=16%  Similarity=0.099  Sum_probs=105.6

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +.+|+.+.|..+ ++.|+ ..|..+.+|+.|+|.+| ++.++  .|.+ .+|+.+.+ .|.++.|+...|.+|++|+.+.
T Consensus       202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred             ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence            578888888844 77776 56778888999998875 66665  5666 67888888 5668888888888888888888


Q ss_pred             cCCCcCC-----CCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhh----cccEEE
Q psy18204         95 LTGNNIQ-----ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM----FGTEII  165 (435)
Q Consensus        95 Ls~N~i~-----~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~----~~~~l~  165 (435)
                      +.+|.+.     .++. ..|.+|++|+.+.|. |.++.++.+   .+..|++|+.+++..+ ++.+....    ....+.
T Consensus       278 l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~-~~i~~I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~  351 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHP-YCLEGCPKLARFEIP-ESIRILGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVK  351 (401)
T ss_dssp             EESSCCCCCTTCEECT-TTTTTCTTCCEECCC-TTCCEECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEE
T ss_pred             eCCccccCCcccEECH-HHhhCCccCCeEEeC-CceEEEhhh---hhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEE
Confidence            8887765     4554 478888888888887 457777665   4577888888888654 44332222    447788


Q ss_pred             EecCCCcc
Q psy18204        166 LSGDSIDA  173 (435)
Q Consensus       166 lsgn~i~~  173 (435)
                      +.++....
T Consensus       352 l~~n~~~~  359 (401)
T 4fdw_A          352 VEGTTPPQ  359 (401)
T ss_dssp             ECCSSCCB
T ss_pred             EcCCCCcc
Confidence            88776553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.61  E-value=5.9e-09  Score=107.98  Aligned_cols=156  Identities=11%  Similarity=0.054  Sum_probs=106.3

Q ss_pred             CCCCcceEEEecC-----------CCcc--cccccccCCCCCCEEEccCCCCCCcC--CCCC-CCCCCEEEcc----CCc
Q psy18204         16 TNPVKDRELDLRG-----------YKIP--VIENMGATLDQFDTIDFSNNDIRKID--GFPL-LKRLSCLFFN----NNR   75 (435)
Q Consensus        16 ~~~~~L~~L~L~~-----------n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~-l~~L~~L~ls----~N~   75 (435)
                      .++++|++|++++           |.++  .++.....+++|+.|+++.|.+++..  .+.. +++|+.|+++    .|.
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            3577899999993           4565  24444556889999999888887642  3443 7889999996    778


Q ss_pred             cccccc-----hhhcCCCCCCeeecCCCc--CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeec
Q psy18204         76 IVRIAE-----NLQENLPNLETLILTGNN--IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS  148 (435)
Q Consensus        76 i~~i~~-----~~~~~l~~L~~L~Ls~N~--i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~  148 (435)
                      ++..|.     .++.++++|+.|+|++|.  +++.........+++|+.|++++|.++....  ...+..+++|+.|+++
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL--MEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH--HHHHTCCTTCCEEEEE
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH--HHHHhcCcccCeeecc
Confidence            886432     234678999999997543  4432211112347889999999998875221  1245678999999999


Q ss_pred             chhHHHH------hhhhcccEEEEecCCCcc
Q psy18204        149 KVKLKAL------MNVMFGTEIILSGDSIDA  173 (435)
Q Consensus       149 ~n~l~~l------~~~~~~~~l~lsgn~i~~  173 (435)
                      +|.++..      ........+.+++|.+..
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            9986432      123345889999988653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.56  E-value=2e-08  Score=88.06  Aligned_cols=119  Identities=14%  Similarity=0.120  Sum_probs=86.3

Q ss_pred             cccccCCCCCCEEEccCC-CCCCcC------CCCCCCCCCEEEccCCcccc-----ccchhhcCCCCCCeeecCCCcCCC
Q psy18204         35 ENMGATLDQFDTIDFSNN-DIRKID------GFPLLKRLSCLFFNNNRIVR-----IAENLQENLPNLETLILTGNNIQE  102 (435)
Q Consensus        35 ~~~~~~l~~L~~L~Ls~N-~l~~l~------~l~~l~~L~~L~ls~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~  102 (435)
                      ...+...++|+.|+|++| .|..-.      .+...++|++|+|++|.|..     +...+ ...++|++|+|++|.|++
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCCH
Confidence            345566788999999998 887531      46677889999999999885     22233 566789999999999876


Q ss_pred             CCC---CCCCCCCCCCCEEEe--ecCCccccccc-hHHHHhcCCccceeeecchhHHH
Q psy18204        103 LGD---LDPLSTLPKLKTLCL--LHNPVINRPHY-RLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus       103 l~~---~~~l~~l~~L~~L~L--~~N~i~~~~~~-~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      .+.   ...+...++|+.|+|  ++|.|+..... -...+...++|+.|++++|.+..
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            321   125677788999999  88998853211 12245677899999999998863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.55  E-value=7e-08  Score=93.73  Aligned_cols=156  Identities=17%  Similarity=0.131  Sum_probs=99.8

Q ss_pred             CCCCcceEEEecCCCcc----------cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc-chhh
Q psy18204         16 TNPVKDRELDLRGYKIP----------VIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-ENLQ   84 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~----------~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~-~~~~   84 (435)
                      ..+++|+.|.+.++...          .+...+..+++|+.|+|++|.-..++.+. +++|++|.+..|.++.-. ..+.
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence            34568889988765321          24455667899999999988322344443 789999999999887422 2221


Q ss_pred             -cCCCCCCeeecCC--CcCC------CCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         85 -ENLPNLETLILTG--NNIQ------ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        85 -~~l~~L~~L~Ls~--N~i~------~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                       ..+|+|+.|+|+.  |...      .+..+-....+++|+.|+|.+|.++............+++|+.||++.|.+...
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence             3789999999863  2221      111111113588999999999998742211111113578999999999987542


Q ss_pred             ---------hhhhcccEEEEecCCCc
Q psy18204        156 ---------MNVMFGTEIILSGDSID  172 (435)
Q Consensus       156 ---------~~~~~~~~l~lsgn~i~  172 (435)
                               ........++++.|.+.
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhhcccCCcceEEECCCCcCC
Confidence                     22344577888777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.51  E-value=8.4e-08  Score=99.26  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=88.9

Q ss_pred             CCCcceEEEecCCCccc-----ccccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCccccccchhhc
Q psy18204         17 NPVKDRELDLRGYKIPV-----IENMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVRIAENLQE   85 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~~~~~~   85 (435)
                      ++++|++|+|++|.++.     ++.....+++|+.|++++|.++.+.      .+..+++|+.|++++|.+..++.. +.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-Hh
Confidence            45677888888877652     3334456778888888888876432      135678888888888888877533 46


Q ss_pred             CCCCCCeeecCCCcCC---------------------------CCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhc
Q psy18204         86 NLPNLETLILTGNNIQ---------------------------ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK  138 (435)
Q Consensus        86 ~l~~L~~L~Ls~N~i~---------------------------~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~  138 (435)
                      .+++|+.|+++.+...                           .++.  .+..+++|+.|+|++|.++....  ...+..
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~  316 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDH--CTLIQK  316 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHH--HHHHTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHH--HHHHHh
Confidence            7777777777642211                           1111  23346677777777777553211  123567


Q ss_pred             CCccceeeecchhHHH-----H-hhhhcccEEEEe
Q psy18204        139 LPQVKLLDFSKVKLKA-----L-MNVMFGTEIILS  167 (435)
Q Consensus       139 l~~L~~Ldl~~n~l~~-----l-~~~~~~~~l~ls  167 (435)
                      +++|+.|+++ +.+..     + ........+.++
T Consensus       317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence            8888888887 33322     1 112335788888

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=2e-08  Score=88.10  Aligned_cols=113  Identities=15%  Similarity=0.082  Sum_probs=87.8

Q ss_pred             ccCCCCcceEEEecCC-Cccc-----ccccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCcccc---
Q psy18204         14 QYTNPVKDRELDLRGY-KIPV-----IENMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVR---   78 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n-~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~---   78 (435)
                      .+.+.++|++|+|++| .|..     +...+...++|+.|+|++|.|..-.      .+...++|++|+|++|.|+.   
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3456789999999999 8873     3355566789999999999997632      35566889999999999996   


Q ss_pred             --ccchhhcCCCCCCeeec--CCCcCCCCCC---CCCCCCCCCCCEEEeecCCccc
Q psy18204         79 --IAENLQENLPNLETLIL--TGNNIQELGD---LDPLSTLPKLKTLCLLHNPVIN  127 (435)
Q Consensus        79 --i~~~~~~~l~~L~~L~L--s~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~  127 (435)
                        +...+ ...++|++|+|  ++|.|++...   ...+...++|+.|+|++|.+..
T Consensus       111 ~~l~~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          111 LALVEAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence              32333 67789999999  8899976331   1245567899999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=9.7e-08  Score=92.74  Aligned_cols=153  Identities=14%  Similarity=0.126  Sum_probs=102.5

Q ss_pred             CCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CC--CCCCCCCEEEccC--Cc------cccccchh
Q psy18204         16 TNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GF--PLLKRLSCLFFNN--NR------IVRIAENL   83 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l--~~l~~L~~L~ls~--N~------i~~i~~~~   83 (435)
                      ..+++|+.|.+++|.-..++. + .+++|+.|+|..|.+..-.  .+  ..+++|+.|+|+.  |.      +..+.+.+
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            456899999999984224444 3 3789999999999886432  23  4789999999863  22      22232222


Q ss_pred             h-cCCCCCCeeecCCCcCCCCCC--CCCCCCCCCCCEEEeecCCccccccchH-HHHhcCCccceeeecchhHHHH----
Q psy18204         84 Q-ENLPNLETLILTGNNIQELGD--LDPLSTLPKLKTLCLLHNPVINRPHYRL-YVAFKLPQVKLLDFSKVKLKAL----  155 (435)
Q Consensus        84 ~-~~l~~L~~L~Ls~N~i~~l~~--~~~l~~l~~L~~L~L~~N~i~~~~~~~~-~~~~~l~~L~~Ldl~~n~l~~l----  155 (435)
                      . ..+|+|+.|+|++|.+++...  +.....+++|++|+|+.|.++....... ..+..+++|+.|+++.|.++.-    
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence            1 358999999999999864221  1112357899999999999886321111 1235689999999999988643    


Q ss_pred             hhhhcccEEEEecCC
Q psy18204        156 MNVMFGTEIILSGDS  170 (435)
Q Consensus       156 ~~~~~~~~l~lsgn~  170 (435)
                      .....+.++.++.+.
T Consensus       327 l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             HHHHCCSEEECCSBC
T ss_pred             HHHHcCCEEEecCCc
Confidence            222236788877765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.34  E-value=5e-08  Score=100.93  Aligned_cols=152  Identities=10%  Similarity=0.067  Sum_probs=102.4

Q ss_pred             CCCcceEEEecC---------CCccc--ccccccCCCCCCEEEccCCCCCCcC--CCC-CCCCCCEEEcc--C----Ccc
Q psy18204         17 NPVKDRELDLRG---------YKIPV--IENMGATLDQFDTIDFSNNDIRKID--GFP-LLKRLSCLFFN--N----NRI   76 (435)
Q Consensus        17 ~~~~L~~L~L~~---------n~i~~--i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~-~l~~L~~L~ls--~----N~i   76 (435)
                      ++++|++|++.+         +.++.  +......+++|+.|+++.|.++...  .+. .+++|+.|+++  +    |.+
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l  415 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL  415 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence            477899999943         34442  2233345789999999889887643  333 57889999998  4    667


Q ss_pred             ccccc-----hhhcCCCCCCeeecCCCcCCCCCCCCCCCC-CCCCCEEEeecCCccccccchHHHHhcCCccceeeecch
Q psy18204         77 VRIAE-----NLQENLPNLETLILTGNNIQELGDLDPLST-LPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKV  150 (435)
Q Consensus        77 ~~i~~-----~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~-l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n  150 (435)
                      +..+.     .++..+++|+.|+|++ .+++... ..+.. +++|+.|+|++|.++....  ......+++|+.|++++|
T Consensus       416 ~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~-~~l~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          416 TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF-EYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-HHHHHHCTTCCEEEEESCCSSHHHH--HHHHHHCTTCCEEEEESC
T ss_pred             cCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-HHHHHhchhccEeeccCCCCcHHHH--HHHHhcCCCcCEEECcCC
Confidence            74432     2347789999999977 5544221 23333 7889999999999864322  113366899999999999


Q ss_pred             hHHHHh------hhhcccEEEEecCCCc
Q psy18204        151 KLKALM------NVMFGTEIILSGDSID  172 (435)
Q Consensus       151 ~l~~l~------~~~~~~~l~lsgn~i~  172 (435)
                      .++...      .......+.++++.+.
T Consensus       492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          492 PFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             SCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            874321      2345588889888763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=1.9e-07  Score=80.51  Aligned_cols=103  Identities=18%  Similarity=0.187  Sum_probs=72.6

Q ss_pred             CCCCCEEEccCCCCCCc--CCCCCCCCCCEEEccCCc-cccccchhhcC----CCCCCeeecCCC-cCCCCCCCCCCCCC
Q psy18204         41 LDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNR-IVRIAENLQEN----LPNLETLILTGN-NIQELGDLDPLSTL  112 (435)
Q Consensus        41 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ls~N~-i~~i~~~~~~~----l~~L~~L~Ls~N-~i~~l~~~~~l~~l  112 (435)
                      -.+|+.||+|++.|+..  ..+..+++|+.|+|++|. |+.-.-.....    +++|++|+|++| +|++-+ +..+..+
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~  138 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF  138 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence            34799999999998765  367889999999999985 77532222234    357999999998 587654 3467789


Q ss_pred             CCCCEEEeecCC-ccccccchHHHHhcCCccce
Q psy18204        113 PKLKTLCLLHNP-VINRPHYRLYVAFKLPQVKL  144 (435)
Q Consensus       113 ~~L~~L~L~~N~-i~~~~~~~~~~~~~l~~L~~  144 (435)
                      ++|+.|+|++++ |+.........-..+|++++
T Consensus       139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            999999999987 55432222223456777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=3.7e-07  Score=84.43  Aligned_cols=100  Identities=20%  Similarity=0.305  Sum_probs=72.4

Q ss_pred             CCcceE--EEecCCCcccccc----cccCCCCCCEEEccCCCCCCcCCCC----CCCCCCEEEccCCccccccchhhcCC
Q psy18204         18 PVKDRE--LDLRGYKIPVIEN----MGATLDQFDTIDFSNNDIRKIDGFP----LLKRLSCLFFNNNRIVRIAENLQENL   87 (435)
Q Consensus        18 ~~~L~~--L~L~~n~i~~i~~----~~~~l~~L~~L~Ls~N~l~~l~~l~----~l~~L~~L~ls~N~i~~i~~~~~~~l   87 (435)
                      .+.|..  ++++.|....++.    ....+++|+.|+|++|.|++++++.    .+++|+.|+|++|+|+.+. .+ ..+
T Consensus       140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l  217 (267)
T 3rw6_A          140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-EL-DKI  217 (267)
T ss_dssp             CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GG-GGG
T ss_pred             CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hh-hhc
Confidence            334454  6777776555442    2346889999999999999886543    7899999999999999873 22 333


Q ss_pred             C--CCCeeecCCCcCCC-CCCC-----CCCCCCCCCCEEE
Q psy18204         88 P--NLETLILTGNNIQE-LGDL-----DPLSTLPKLKTLC  119 (435)
Q Consensus        88 ~--~L~~L~Ls~N~i~~-l~~~-----~~l~~l~~L~~L~  119 (435)
                      .  +|++|+|++|.+.. ++..     ..+..+++|+.|+
T Consensus       218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            3  89999999999964 3310     1356788998886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.18  E-value=2.1e-07  Score=96.22  Aligned_cols=133  Identities=15%  Similarity=0.105  Sum_probs=97.5

Q ss_pred             CCCcceEEEecCCCccc--ccccccCCCCCCEEEcc--C----CCCCCcC---C----CCCCCCCCEEEccCCcccccc-
Q psy18204         17 NPVKDRELDLRGYKIPV--IENMGATLDQFDTIDFS--N----NDIRKID---G----FPLLKRLSCLFFNNNRIVRIA-   80 (435)
Q Consensus        17 ~~~~L~~L~L~~n~i~~--i~~~~~~l~~L~~L~Ls--~----N~l~~l~---~----l~~l~~L~~L~ls~N~i~~i~-   80 (435)
                      ++++|+.|.+..|.++.  +......+++|+.|+++  +    |.++..+   +    +..+++|+.|++++ .++... 
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            36789999999898874  23344458999999999  4    6676442   1    46678999999987 666432 


Q ss_pred             chhhcCCCCCCeeecCCCcCCCCCCCCCC-CCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         81 ENLQENLPNLETLILTGNNIQELGDLDPL-STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l-~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      ..+...+++|+.|+|++|.+++... ..+ ..+++|+.|+|++|+++....  ...+..+++|+.|++++|+++
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGM-HHVLSGCDSLRKLEIRDCPFGDKAL--LANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHH-HHHHHHCTTCCEEEEESCSCCHHHH--HHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHhchhccEeeccCCCCcHHHH-HHHHhcCCCcCEEECcCCCCcHHHH--HHHHHhCCCCCEEeeeCCCCC
Confidence            3443458999999999999865432 133 568999999999999854321  113456899999999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.11  E-value=1.2e-05  Score=78.26  Aligned_cols=128  Identities=13%  Similarity=0.187  Sum_probs=86.8

Q ss_pred             cCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         15 YTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      +..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ++.++  .|.++.+|+.+.+.. .++.++...|.+|++|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence            344555666666543 33333 44556777888877665 66664  577777888887754 47777777778888888


Q ss_pred             eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecch
Q psy18204         92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKV  150 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n  150 (435)
                      .+.+.++.++.++. ..|.+|.+|+.+.|..+ ++.+..+   .+..|.+|+.+.+..+
T Consensus       290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCCCTT
T ss_pred             cccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEECCc
Confidence            88888777777776 47788888888888644 6666665   4567777877777543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.10  E-value=9.3e-06  Score=79.68  Aligned_cols=125  Identities=14%  Similarity=0.250  Sum_probs=92.6

Q ss_pred             cceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         20 KDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      .+..+.+. +.+..+. ..+..+..|+.+.+.++.. .++  .|.++++|+.+.+. +.++.|+...|.+|.+|+.+.|.
T Consensus       243 ~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp  319 (394)
T 4gt6_A          243 EDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP  319 (394)
T ss_dssp             CCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccceEEcC-CcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence            33444443 2344443 4577788899998876543 343  68888899999885 67888888888999999999997


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      .+ ++.++. ..|.+|.+|+.+.+..+ ++.+..+   .+..|.+|+.+++.++...
T Consensus       320 ~~-v~~I~~-~aF~~C~~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          320 EG-ITQILD-DAFAGCEQLERIAIPSS-VTKIPES---AFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             TT-CCEECT-TTTTTCTTCCEEEECTT-CCBCCGG---GGTTCTTCCEEEESSCHHH
T ss_pred             Cc-ccEehH-hHhhCCCCCCEEEECcc-cCEEhHh---HhhCCCCCCEEEECCceee
Confidence            64 777776 48888999999998654 7777765   5678899999999887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.05  E-value=1.2e-05  Score=78.19  Aligned_cols=113  Identities=10%  Similarity=0.115  Sum_probs=95.2

Q ss_pred             ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      .|.++..|+.+.+..+ ++.|. ..+..+.+|+.+.+..+ ++.++  .|.++++|+.+.+.++.++.|++..|.+|.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            4677889999999876 66665 56778899999999754 66665  68999999999999999999999999999999


Q ss_pred             CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccc
Q psy18204         91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY  131 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~  131 (435)
                      +.+.|..+ ++.++. ..|.+|.+|+.+.+..+ ++.+..+
T Consensus       313 ~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~-v~~I~~~  350 (379)
T 4h09_A          313 SSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS-ITLIESG  350 (379)
T ss_dssp             CEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             CEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-cCEEchh
Confidence            99999765 788876 48999999999999765 7777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.00  E-value=2.4e-05  Score=76.67  Aligned_cols=85  Identities=14%  Similarity=0.099  Sum_probs=59.7

Q ss_pred             CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhc
Q psy18204         59 GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK  138 (435)
Q Consensus        59 ~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~  138 (435)
                      .|..+.+|+.+.+.++ ++.|++..|.+|.+|+.++|.++ ++.++. ..|.+|.+|+.+.+..| ++.++..   .+..
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~  364 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN---AFQG  364 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEECTT---TBTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEehHH---HhhC
Confidence            4566777777777544 77777777777888888887644 666665 47777888888887666 6666654   4567


Q ss_pred             CCccceeeecch
Q psy18204        139 LPQVKLLDFSKV  150 (435)
Q Consensus       139 l~~L~~Ldl~~n  150 (435)
                      |++|+.+++..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            777887777644

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.92  E-value=7e-05  Score=73.36  Aligned_cols=82  Identities=16%  Similarity=0.198  Sum_probs=38.2

Q ss_pred             CCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC
Q psy18204         60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL  139 (435)
Q Consensus        60 l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l  139 (435)
                      |.++..|+.+.+.++ +..|....|.++++|+.+.+. +.++.++. ..|.+|.+|+.+.|..+ ++.+..+   .+..|
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~-~aF~~c~~L~~i~lp~~-v~~I~~~---aF~~C  333 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPE-SVFAGCISLKSIDIPEG-ITQILDD---AFAGC  333 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTC
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCc-eeecCCCCcCEEEeCCc-ccEehHh---HhhCC
Confidence            445555555555322 233444444555555555553 23444443 24555555555555432 4444433   23445


Q ss_pred             Cccceeeec
Q psy18204        140 PQVKLLDFS  148 (435)
Q Consensus       140 ~~L~~Ldl~  148 (435)
                      .+|+.+.+.
T Consensus       334 ~~L~~i~ip  342 (394)
T 4gt6_A          334 EQLERIAIP  342 (394)
T ss_dssp             TTCCEEEEC
T ss_pred             CCCCEEEEC
Confidence            555555553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.81  E-value=6.6e-05  Score=73.54  Aligned_cols=100  Identities=11%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCC
Q psy18204         37 MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPK  114 (435)
Q Consensus        37 ~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~  114 (435)
                      .+..+.+|+.+.+.++ ++.++  +|.++.+|+.+.+.+ .++.|+...|.+|.+|+.+++..| ++.++. ..|.+|++
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCIN  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCC
Confidence            4556788899988765 77775  689999999999975 499999999999999999999877 888876 58999999


Q ss_pred             CCEEEeecCCccccccchHHHHhcCCcccee
Q psy18204        115 LKTLCLLHNPVINRPHYRLYVAFKLPQVKLL  145 (435)
Q Consensus       115 L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~L  145 (435)
                      |+.+.+..+ ++.+. +   .+..+++|+.+
T Consensus       368 L~~i~lp~~-~~~~~-~---~F~~c~~L~~I  393 (394)
T 4fs7_A          368 LKKVELPKR-LEQYR-Y---DFEDTTKFKWI  393 (394)
T ss_dssp             CCEEEEEGG-GGGGG-G---GBCTTCEEEEE
T ss_pred             CCEEEECCC-CEEhh-h---eecCCCCCcEE
Confidence            999999765 44432 2   35677877754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=1.7e-05  Score=68.29  Aligned_cols=85  Identities=16%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCC-CCCcC--CCCCC----CCCCEEEccCCc-cccccchhhcCCC
Q psy18204         18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNND-IRKID--GFPLL----KRLSCLFFNNNR-IVRIAENLQENLP   88 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~-l~~l~--~l~~l----~~L~~L~ls~N~-i~~i~~~~~~~l~   88 (435)
                      .-+|+.||+++|.|+... ..+..+++|+.|+|++|. |++-.  .++.+    ++|+.|+|++|. |+.-.-.....++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            447999999999987432 234679999999999995 76543  45553    479999999985 8854333336799


Q ss_pred             CCCeeecCCC-cCCC
Q psy18204         89 NLETLILTGN-NIQE  102 (435)
Q Consensus        89 ~L~~L~Ls~N-~i~~  102 (435)
                      +|++|+|+++ .|++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            9999999998 4665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.51  E-value=0.00015  Score=59.26  Aligned_cols=55  Identities=27%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             EEEccCCccc--cccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcc
Q psy18204         68 CLFFNNNRIV--RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI  126 (435)
Q Consensus        68 ~L~ls~N~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~  126 (435)
                      .++.+++.++  .+|..+   .++|+.|+|++|+|+.++. ..|..+++|+.|+|.+|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence            4444555544  444322   1245555555555555543 34445555555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.37  E-value=5.5e-05  Score=66.31  Aligned_cols=118  Identities=12%  Similarity=0.059  Sum_probs=80.2

Q ss_pred             ccccCCCCCCEEEccCC-CCCCc------CCCCCCCCCCEEEccCCccccccc----hhhcCCCCCCeeecCCCcCCCCC
Q psy18204         36 NMGATLDQFDTIDFSNN-DIRKI------DGFPLLKRLSCLFFNNNRIVRIAE----NLQENLPNLETLILTGNNIQELG  104 (435)
Q Consensus        36 ~~~~~l~~L~~L~Ls~N-~l~~l------~~l~~l~~L~~L~ls~N~i~~i~~----~~~~~l~~L~~L~Ls~N~i~~l~  104 (435)
                      .....-+.|+.|+|++| .|..-      ..+..-+.|+.|+|++|.|.....    ..+..-+.|++|+|++|.|+.-+
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            44555678999999985 77643      246677889999999999985321    22245678999999999997644


Q ss_pred             C---CCCCCCCCCCCEEEeecCC---cccccc-chHHHHhcCCccceeeecchhHH
Q psy18204        105 D---LDPLSTLPKLKTLCLLHNP---VINRPH-YRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       105 ~---~~~l~~l~~L~~L~L~~N~---i~~~~~-~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      .   .+.+..-+.|+.|+|++|.   +..... .-..++..-++|+.|+++.|.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            2   1245566679999998653   332111 11234567788999999888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.32  E-value=0.00027  Score=57.66  Aligned_cols=55  Identities=22%  Similarity=0.388  Sum_probs=44.8

Q ss_pred             CEEEccCCCCC--CcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCC
Q psy18204         45 DTIDFSNNDIR--KID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ  101 (435)
Q Consensus        45 ~~L~Ls~N~l~--~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~  101 (435)
                      ..++.+++.++  .+| +++  ++|+.|+|++|+|+.++.+.|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888888  777 343  46888999999999988888888889999999988774

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.13  E-value=0.00013  Score=63.92  Aligned_cols=110  Identities=8%  Similarity=0.115  Sum_probs=79.0

Q ss_pred             CCCCcceEEEecCC-Cccc-----ccccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCcccccc---
Q psy18204         16 TNPVKDRELDLRGY-KIPV-----IENMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVRIA---   80 (435)
Q Consensus        16 ~~~~~L~~L~L~~n-~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~---   80 (435)
                      .+-+.|++|+|++| .|..     +-..+..-+.|+.|+|++|.|.+..      .+..-+.|+.|+|++|.|+.-.   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45568999999986 7763     3344556789999999999998653      2456678999999999999532   


Q ss_pred             --chhhcCCCCCCeeecCCCcCCCCCC------CCCCCCCCCCCEEEeecCCcc
Q psy18204         81 --ENLQENLPNLETLILTGNNIQELGD------LDPLSTLPKLKTLCLLHNPVI  126 (435)
Q Consensus        81 --~~~~~~l~~L~~L~Ls~N~i~~l~~------~~~l~~l~~L~~L~L~~N~i~  126 (435)
                        +.+ ..-+.|++|+|++|....+++      .+.+..-+.|+.|+++.|.+.
T Consensus       118 la~aL-~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRST-LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHT-TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHH-hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              233 556779999999764322221      124555678999999887654

>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A

Probab=96.33  E-value=0.00066  Score=64.21  Aligned_cols=94  Identities=13%  Similarity=0.104  Sum_probs=60.8

Q ss_pred             cccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCcc---chhhhhhceeccccChH----------
Q psy18204        172 DAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGP---GWVMQIAGFLYIERNWD----------  238 (435)
Q Consensus       172 ~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~---G~~~~~~~~ifl~R~~~----------  238 (435)
                      ....++++++||++..|...+..............+.+++|.+|...|++   +++ ..++++|.+|...          
T Consensus       127 ~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~~  205 (367)
T 1iuq_A          127 QQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIG-RNLICVYSKKHMFDIPELTETKR  205 (367)
T ss_dssp             HTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHHH
T ss_pred             cCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhh-hheeeEEecccCCCcchhhhhhh
Confidence            35688999999999999888766542211111136889999999988877   555 3367888755433          


Q ss_pred             -HhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204        239 -SDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE  275 (435)
Q Consensus       239 -~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~  275 (435)
                       .+.+++.+..+.+++.         +...+.+||||+
T Consensus       206 r~n~ksl~~~~~~Lk~G---------G~sI~IFPEGTR  234 (367)
T 1iuq_A          206 KANTRSLKEMALLLRGG---------SQLIWIAPSGGR  234 (367)
T ss_dssp             HHHHHHHHHHHHHHHHC---------CCEEEECTTCSC
T ss_pred             HHHHHHHHHHHHHHHcC---------CeEEEEeCCCCC
Confidence             3444444444444332         224677899994

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=82.39  E-value=1.7  Score=32.98  Aligned_cols=48  Identities=21%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             CccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecC
Q psy18204         74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN  123 (435)
Q Consensus        74 N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N  123 (435)
                      ..++.|....|.+|.+|+.+.+-.+ ++.++. ..|.+|.+|+.+.+.+.
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcCC
Confidence            4455666666666666666666653 555554 36666666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	435
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-31
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-06
d1iuqa_	367	c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransf	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-31
 Identities = 106/152 (69%), Positives = 125/152 (82%)

Query: 2   VKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFP 61
           VKLTA+LI Q  QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGFP
Sbjct: 1   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 62  LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLL 121
           LL+RL  L  NNNRI RI E L + LP+L  LILT N++ ELGDLDPL++L  L  LC+L
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 122 HNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
            NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 152

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK-IDGFPLLKRLSCLFFNNNRIVRIA 80
           R L L    + V+ ++   L     +D S+N +R        L+ L  L  ++N +  + 
Sbjct: 1   RVLHLAHKDLTVLCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 81  ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
                    L+ L+L  N +Q+   + PL + P+L  L L  N +      +  +A  LP
Sbjct: 60  GVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 141 QVKLL 145
            V  +
Sbjct: 118 SVSSI 122

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 41  LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
           L     +    N+I  I     L +L  LFF NN++  ++     NL N+  L    N I
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQI 363

Query: 101 QELGDLDPLSTLPKLKTLCLLHN 123
               DL PL+ L ++  L L   
Sbjct: 364 S---DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 11/127 (8%)

Query: 22  RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
            EL L   +I  I  +   L     ++ + N +  I     LK L+ L    N I  I+ 
Sbjct: 266 TELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 82  NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
               +L  L+ L    N +    D+  L+ L  +  L   HN + +           L +
Sbjct: 325 --VSSLTKLQRLFFANNKVS---DVSSLANLTNINWLSAGHNQISDLTPLA-----NLTR 374

Query: 142 VKLLDFS 148
           +  L  +
Sbjct: 375 ITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 48  DFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLD 107
                ++        L +++ L  +   I  I + + E L NL  +  + N +    D+ 
Sbjct: 28  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGV-EYLNNLTQINFSNNQLT---DIT 82

Query: 108 PLSTLPKLKTLCLLHNPVINRPHY 131
           PL  L KL  + + +N + +    
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPL 106

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 36  NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95
           ++ A L   +++  +NN I  I    +L  L  L  N N++  I      +L NL  L L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDL 248

Query: 96  TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY 131
             N I    +L PLS L KL  L L  N + N    
Sbjct: 249 ANNQIS---NLAPLSGLTKLTELKLGANQISNISPL 281

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 6e-08
 Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 30/156 (19%)

Query: 25  DLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQ 84
           +L+  ++  ++ + +              +R             L   ++    +   ++
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATL-RIIE 61

Query: 85  ENLPNLETLILTGNNIQELGDLDP-LSTLPKLK------------------------TLC 119
           EN+P L +L L+ N +  L D+   +   P LK                         L 
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 120 LLHNPV----INRPHYRLYVAFKLPQVKLLDFSKVK 151
           L  N +     ++  Y   +  + P++  LD  ++ 
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 46  TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
            ++ SNN + ++    L  RL  L  + N +      + E   NL+ L +  N ++E  D
Sbjct: 288 ELNVSNNKLIELP--ALPPRLERLIASFNHL----AEVPELPQNLKQLHVEYNPLREFPD 341

Query: 106 LDPLSTLPKLK 116
           +    ++  L+
Sbjct: 342 I--PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 60  FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
             L   L  L  +NN++      L    P LE LI + N++ E+ +L        LK L 
Sbjct: 280 CDLPPSLEELNVSNNKL----IELPALPPRLERLIASFNHLAEVPEL-----PQNLKQLH 330

Query: 120 LLHNP 124
           + +NP
Sbjct: 331 VEYNP 335

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 32/168 (19%)

Query: 17  NPVKDRELDLRGYKIPVIENMGATLDQFD---TIDFSNNDIRKIDGFPLLKRLSCLFF-- 71
              +  +++L G  IP IE M ATL        +  S N+I KI     ++ L  L    
Sbjct: 21  VATEAEKVELHG-MIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGR 79

Query: 72  -------------------NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTL 112
                                +     + +  E L NL  L ++ N I   G++D L+ L
Sbjct: 80  NLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 113 PKLKTLCLLHNPVINRP-------HYRLYVAFKLPQVKLLDFSKVKLK 153
            KL+ L L  NP+ N          YR+ V  +LP +K LD   V + 
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVD 187

>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]} Length = 367

class: Alpha and beta proteins (a/b)
fold: Glycerol-3-phosphate (1)-acyltransferase
superfamily: Glycerol-3-phosphate (1)-acyltransferase
family: Glycerol-3-phosphate (1)-acyltransferase
domain: Glycerol-3-phosphate (1)-acyltransferase
species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 22/259 (8%), Positives = 59/259 (22%), Gaps = 43/259 (16%)

Query: 144 LLDFSKVKLKALMNVMFGTEIILSG-DSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRP 202
           L+DF         + +    +     + +  G   + I NH+T  D   +   +   +  
Sbjct: 105 LIDFGN-------SFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPY 157

Query: 203 SAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD------SDQQAMTEQLDYFHDIQH 256
            A     V    +   P           + +             +           ++  
Sbjct: 158 IAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMAL 217

Query: 257 PVQEKQEAAALF--------KSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAV 308
            ++   +   +             G+         +   +    L   S++P       +
Sbjct: 218 LLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNM--RRLIQHSDVPG-----HL 270

Query: 309 YDITVGYLGTIPQS-------------EMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAM 355
           + + +     +P                 +        +  F     +  +      +A 
Sbjct: 271 FPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEV-REAY 329

Query: 356 KAWLNQIWAEKEAHLNRFY 374
              L    A +   L    
Sbjct: 330 SKALFDSVAMQYNVLKTAI 348

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 43  QFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101
               +  S+  + K+    P     + L   NN+I  I +   +NL NL TLIL  N I 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 102 ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG 161
           ++      + L KL+ L L  N +   P        +L   +  + +KV+      +   
Sbjct: 69  KISP-GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE-NEITKVRKSVFNGLNQM 126

Query: 162 TEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMF 197
             + L  + + +            +L +  +     
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 12/157 (7%)

Query: 46  TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
            +D  NN I +I    F  LK L  L   NN+I +I+      L  LE L L+ N ++EL
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG-- 161
               P      L+ L +  N  I +    ++       V  L  + +K   + N  F   
Sbjct: 95  ----PEKMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 162 ---TEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGC 195
              + I ++  +I    Q L        LD N +   
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 65  RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
           +L+ L  ++N+I  I+     +LPNL  + L  N I    D+ PL+    L  + L +
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 84  QENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYR 132
           Q +L  + TL   G  +     ++ +  L  L  L L  N + +    +
Sbjct: 37  QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQITDLAPLK 82

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 67  SCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
                NN     + + L   L  L +L ++ NN+   G++     L +       +N 
Sbjct: 248 GLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLC--GEIPQGGNLQRFDVSAYANNK 302

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 7/81 (8%)

Query: 48  DFSNNDIRKIDGFPLLKRLSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNIQE 102
                 +           L  L    N I       +   + E +P+L  L L GN   E
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316

Query: 103 LGDLDPLSTLPKLKTLCLLHN 123
             D+  +  + ++ +      
Sbjct: 317 EDDV--VDEIREVFSTRGRGE 335

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 66  LSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
                 +NN +  +  ++         L ++   I  L     L  L KL+     + 
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNL 235

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 66  LSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLH 122
           + C   ++ R   +   LQ      + + L    + E         L   P L  L L  
Sbjct: 9   IQCEELSDARWAELLPLLQ----QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 123 NPVINRPHYRLYVAFKLPQVKL 144
           N + +   + +    + P  K+
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 18/89 (20%)

Query: 46  TIDFSNNDIRKI------DGFPLLKRLSCLFFNNNRI-----VRIAENLQENLPNLETLI 94
            +  ++ D+                 L  L  +NN +     +++ E++++    LE L+
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 95  LTGNNI-----QELGDLDPLSTLPKLKTL 118
           L            L  L      P L+ +
Sbjct: 433 LYDIYWSEEMEDRLQAL--EKDKPSLRVI 459

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	435
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.92
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.4
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.39
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.39
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.17
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.83
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.5
d1iuqa_	367	Glycerol-3-phosphate (1)-acyltransferase {Cushaw s	98.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.36
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.06

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.3e-26  Score=193.38  Aligned_cols=153  Identities=69%  Similarity=1.126  Sum_probs=144.4

Q ss_pred             ccccHHHHhcccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccc
Q psy18204          2 VKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE   81 (435)
Q Consensus         2 ~~lt~~~i~~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~   81 (435)
                      ||||+++|...++|.++.++++|+|++|+|+.|++.+..+++|+.|+|++|.|+.+++++.+++|++|++++|+|+.+++
T Consensus         1 ~rLt~~~i~~~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~   80 (162)
T d1a9na_           1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE   80 (162)
T ss_dssp             CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECS
T ss_pred             CCCCHHHHhhhHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCc
Confidence            89999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204         82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus        82 ~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      .++..+++|+.|++++|+|++++++..+..+++|++|++++|+++..+.++.+++..+|+|+.||.+.....+
T Consensus        81 ~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~e  153 (162)
T d1a9na_          81 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  153 (162)
T ss_dssp             CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCHHH
Confidence            8888999999999999999998877788999999999999999999999998899999999999987765543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.4e-18  Score=141.21  Aligned_cols=122  Identities=26%  Similarity=0.377  Sum_probs=111.0

Q ss_pred             eEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcC
Q psy18204         22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI  100 (435)
Q Consensus        22 ~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i  100 (435)
                      |.|+|++|+|+.++. +..+.+|++|++++|.|+.++ +++.+++|+.|++++|.|+.++ .+ +.+++|++|++++|+|
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~-~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-cc-ccccccCeEECCCCcc
Confidence            579999999999986 467999999999999999997 6899999999999999999995 44 8999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceee
Q psy18204        101 QELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLD  146 (435)
Q Consensus       101 ~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ld  146 (435)
                      ++++.+..+..+++|+.|++++|+++.++.++..+...+|+|+.|.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~Ll  123 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  123 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceEe
Confidence            9988777889999999999999999999888888888899998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.6e-17  Score=149.10  Aligned_cols=171  Identities=18%  Similarity=0.194  Sum_probs=136.9

Q ss_pred             CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      +++++|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++.++.+++|++|+|++|+++.++..+ ..+++|+.|++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~L~l~~  109 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF  109 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT-TTCTTCCEEECCS
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            57999999999999887 567889999999999999999988888999999999999999886654 7899999999999


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID  172 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~  172 (435)
                      |.+..++. ..+..+.+++.|++++|.++.++..   .+..+++|+.|++++|+++.+...     .....+++++|.+.
T Consensus       110 ~~~~~~~~-~~~~~l~~l~~L~l~~n~l~~l~~~---~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccceeec-cccccccccccccccccccceeccc---cccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            99988776 4778889999999999999988764   356788999999999998766432     33478999999887


Q ss_pred             ccccceeecCCccccccchhchhhh
Q psy18204        173 AGDQALFIMNHRTRLDWNFLWGCMF  197 (435)
Q Consensus       173 ~~~~~~~i~nh~~~lD~l~l~~~~~  197 (435)
                      ..+..++-..+   +..+.+.++++
T Consensus       186 ~lp~~~~~~~~---L~~L~L~~Np~  207 (266)
T d1p9ag_         186 TIPKGFFGSHL---LPFAFLHGNPW  207 (266)
T ss_dssp             CCCTTTTTTCC---CSEEECCSCCB
T ss_pred             ccChhHCCCCC---CCEEEecCCCC
Confidence            65554443333   33444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=147.74  Aligned_cols=155  Identities=22%  Similarity=0.255  Sum_probs=135.4

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      ..|.++++|++|+|++|+|+.++.. +.+++|+.|+|++|.++..+ .+..+++|+.|++++|.+..++...+..+.+|+
T Consensus        49 ~~f~~l~~L~~L~L~~N~l~~l~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  127 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (266)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             HHhhccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccceeeccccccccccc
Confidence            4678999999999999999988854 57999999999999999886 688899999999999999999888889999999


Q ss_pred             eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhhc----ccEEEEe
Q psy18204         92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMF----GTEIILS  167 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~~----~~~l~ls  167 (435)
                      .|++++|.++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.||+++|+++.+...++    ...+.++
T Consensus       128 ~L~l~~n~l~~l~~-~~~~~l~~l~~l~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         128 ELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPAG---LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             EEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             cccccccccceecc-ccccccccchhcccccccccccCcc---ccccccccceeecccCCCcccChhHCCCCCCCEEEec
Confidence            99999999999886 4778899999999999999988764   45789999999999999987654433    3788888


Q ss_pred             cCCCc
Q psy18204        168 GDSID  172 (435)
Q Consensus       168 gn~i~  172 (435)
                      ||.+.
T Consensus       204 ~Np~~  208 (266)
T d1p9ag_         204 GNPWL  208 (266)
T ss_dssp             SCCBC
T ss_pred             CCCCC
Confidence            88764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=4e-16  Score=136.56  Aligned_cols=128  Identities=20%  Similarity=0.206  Sum_probs=111.8

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCC-cC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK-ID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT   96 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls   96 (435)
                      ..+.++.++++++.||..+  .++++.|+|++|.|+. ++  .|..+++|+.|++++|.++.+++..+..+++|++|+|+
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3568999999999998654  3689999999999976 43  57889999999999999999998888999999999999


Q ss_pred             CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +|+|+.+++ +.|.++++|+.|+|++|.|+.++..   .+..+++|+.|++++|.+.
T Consensus        87 ~N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~~~---~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCH-HHHhCCCcccccccCCccccccCHH---HhcCCcccccccccccccc
Confidence            999999886 5789999999999999999988775   3578899999999999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.1e-15  Score=123.70  Aligned_cols=104  Identities=20%  Similarity=0.323  Sum_probs=93.9

Q ss_pred             CEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCC
Q psy18204         45 DTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP  124 (435)
Q Consensus        45 ~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~  124 (435)
                      +.|+|++|.|+.++.+..+++|++|++++|+|+.+|+.+ +.+++|+.|++++|.|+.++   .+..+++|+.|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~-~~l~~L~~L~l~~N~i~~l~---~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVD---GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhh-hhhhcccccccccccccccC---ccccccccCeEECCCCc
Confidence            579999999999999999999999999999999998765 78999999999999999876   57889999999999999


Q ss_pred             ccccccchHHHHhcCCccceeeecchhHHH
Q psy18204        125 VINRPHYRLYVAFKLPQVKLLDFSKVKLKA  154 (435)
Q Consensus       125 i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~  154 (435)
                      ++.++...  .+..+++|+.|++++|+++.
T Consensus        77 i~~~~~~~--~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQ--PLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTG--GGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCch--hhcCCCCCCEEECCCCcCCc
Confidence            99887532  35789999999999999873

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=2.2e-15  Score=133.70  Aligned_cols=146  Identities=20%  Similarity=0.306  Sum_probs=119.4

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      +.+|+.|++++|.++.+++ +..+++|+.|+|++|.|++++.++.+++|+.|++++|+|+.++ .+ ..+++|+.|++++
T Consensus        45 L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SL-KDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GG-TTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccccccCccccccccccccccccc-cc-ccccccccccccc
Confidence            5578999999999988876 4568999999999999999888888999999999999999885 34 7899999999999


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCCccc
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSIDAG  174 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i~~~  174 (435)
                      |.+..++   .+..+++|+.+++++|.++..+.     ...+++|+.+++++|+++.+..   ......+++++|.+...
T Consensus       122 ~~~~~~~---~l~~l~~l~~l~~~~n~l~~~~~-----~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         122 NGISDIN---GLVHLPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             SCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred             ccccccc---ccccccccccccccccccccccc-----ccccccccccccccccccccccccCCCCCCEEECCCCCCCCC
Confidence            9887765   56778889999999999887654     3678899999999998876533   33457888888887643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=2.1e-15  Score=132.64  Aligned_cols=147  Identities=28%  Similarity=0.386  Sum_probs=123.1

Q ss_pred             CCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         16 TNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ..+.+++.|++++|.|+.+++ +..+++|++|++++|.|++++.++.+++|+.|++++|.+..++. + +++++|+.|++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l-~~l~~L~~L~l  113 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLTL  113 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSEEEC
T ss_pred             HHhcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccCcccccCCcccccccccccccccccc-c-ccccccccccc
Confidence            346789999999999998875 45689999999999999999889999999999999999998864 3 78999999999


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEecCCCc
Q psy18204         96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSGDSID  172 (435)
Q Consensus        96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsgn~i~  172 (435)
                      ++|.+..+.   .+..+++|+.|++++|.+..++.     +..+++|+.|++++|+++.+.   .......+++++|.+.
T Consensus       114 ~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-----l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         114 FNNQITDID---PLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc---ccchhhhhHHhhhhhhhhccccc-----ccccccccccccccccccCCccccCCCCCCEEECCCCCCC
Confidence            999887754   56789999999999999987764     468899999999999886553   3344588888888775


Q ss_pred             c
Q psy18204        173 A  173 (435)
Q Consensus       173 ~  173 (435)
                      .
T Consensus       186 ~  186 (199)
T d2omxa2         186 D  186 (199)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.4e-15  Score=133.06  Aligned_cols=112  Identities=23%  Similarity=0.307  Sum_probs=101.1

Q ss_pred             CCcceEEEecCCCccc-cc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         18 PVKDRELDLRGYKIPV-IE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~-i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      ++++++|+|++|.|+. ++ ..+..+++|+.|+|++|.+..++  .+..+++|+.|+|++|+|+.+++..|.++++|++|
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            3589999999999974 54 56788999999999999999885  68899999999999999999999999999999999


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      +|++|+|+.++. +.|..+++|++|+|++|++.....
T Consensus       108 ~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_         108 NLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccCCccccccCH-HHhcCCcccccccccccccccccc
Confidence            999999999986 588999999999999999985544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=2.2e-15  Score=132.54  Aligned_cols=133  Identities=26%  Similarity=0.307  Sum_probs=117.8

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      ..+..+++|+.|++++|+++.+++ +..+++|+.|++++|.+..++.+..+++|+.|++++|.+..++. + ..+++|+.
T Consensus        56 ~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~l~~L~~  132 (199)
T d2omxa2          56 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-L-KNLTNLNR  132 (199)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-G-TTCTTCSE
T ss_pred             cccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccccccccccccccc-c-chhhhhHH
Confidence            346678999999999999998876 66799999999999999999989999999999999999998743 3 78999999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM  156 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~  156 (435)
                      |++++|++..++   .+..+++|+.|++.+|.++.++.     +..+++|+.|++++|+++.+.
T Consensus       133 L~l~~n~l~~~~---~l~~~~~L~~L~l~~n~l~~l~~-----l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         133 LELSSNTISDIS---ALSGLTSLQQLNFSSNQVTDLKP-----LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             EECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG
T ss_pred             hhhhhhhhcccc---cccccccccccccccccccCCcc-----ccCCCCCCEEECCCCCCCCCc
Confidence            999999998764   57889999999999999998865     478999999999999987653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.1e-15  Score=136.46  Aligned_cols=136  Identities=20%  Similarity=0.290  Sum_probs=72.3

Q ss_pred             ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL   90 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L   90 (435)
                      .|.++++|++|++++|.+..++ ..+..+.+|+.+++++|.|+.++  .|..+++|+.|++++|+|+.+++..|.++++|
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            3445555555555555555443 23444555555555555555553  34555555555555555555555555555555


Q ss_pred             CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204         91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      +.+++++|+++.+.+ ..+..+++|++|++++|.++.++..   .+..+++|+.|++++|++.
T Consensus       180 ~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~~---~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         180 DRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEEECCSSCEE
T ss_pred             chhhhhhccccccCh-hHhhhhhhccccccccccccccccc---ccccccccCEEEecCCCCC
Confidence            555555555555443 2455555555555555555554432   3445555555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1e-14  Score=129.35  Aligned_cols=133  Identities=29%  Similarity=0.359  Sum_probs=110.9

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      ..+.++++|++|++++|+|+.++.. +.+++|+.|++++|.|+.++.+..+++|+.|++++|.+..++ .+ ..+++|+.
T Consensus        62 ~~l~~l~~L~~L~L~~n~i~~l~~~-~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~-~l-~~l~~l~~  138 (210)
T d1h6ta2          62 QGIQYLPNVTKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GL-VHLPQLES  138 (210)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GG-GGCTTCCE
T ss_pred             hhHhhCCCCCEEeCCCccccCcccc-ccCccccccccccccccccccccccccccccccccccccccc-cc-cccccccc
Confidence            3466788999999999999888754 568899999999999998888888999999999999988874 33 68899999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM  156 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~  156 (435)
                      +++++|.+++..   .+..+++|+.+++++|.++.++.     +..+++|+.|++++|+++.+.
T Consensus       139 l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~i~~-----l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         139 LYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             EECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCBCG
T ss_pred             cccccccccccc---ccccccccccccccccccccccc-----ccCCCCCCEEECCCCCCCCCh
Confidence            999999987754   45678899999999999988765     468899999999999887543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=135.38  Aligned_cols=112  Identities=22%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             CCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC
Q psy18204         60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL  139 (435)
Q Consensus        60 l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l  139 (435)
                      |.++++|+.|++++|.+..++...+..+++|+.+++++|+|+.+++ ..+..+++|+.|++++|.++.++..   .+..+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~-~~f~~~~~L~~L~l~~N~l~~l~~~---~f~~l  176 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPER---AFRGL  176 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTT---TTTTC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh-hHhccccchhhcccccCcccccchh---hhccc
Confidence            4556667777777777666666555666667777777777766654 3566666677777777766665543   34566


Q ss_pred             CccceeeecchhHHHHhhhh-----cccEEEEecCCCcccc
Q psy18204        140 PQVKLLDFSKVKLKALMNVM-----FGTEIILSGDSIDAGD  175 (435)
Q Consensus       140 ~~L~~Ldl~~n~l~~l~~~~-----~~~~l~lsgn~i~~~~  175 (435)
                      ++|+.+++++|+++.+....     ....+++++|.+....
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            66667777666665442222     2256666666665433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.51  E-value=3e-17  Score=144.49  Aligned_cols=131  Identities=29%  Similarity=0.468  Sum_probs=66.5

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCC-CCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF-PLLKRLSCLFFNNNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      +.++++|+.|+|++|+|+.+++ +..+++|+.|+|++|.|+.++.+ ..+++|+.|++++|+|+.++ .+ ..+++|+.|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~-~~l~~L~~L  120 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HH-HHHHHSSEE
T ss_pred             HhcccccceeECcccCCCCccc-ccCCccccChhhcccccccccccccccccccccccccccccccc-cc-ccccccccc
Confidence            3344555555555555555543 33455555555555555555432 22334555555555555552 22 445555555


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc-------ccchHHHHhcCCccceeeec
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR-------PHYRLYVAFKLPQVKLLDFS  148 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~-------~~~~~~~~~~l~~L~~Ldl~  148 (435)
                      ++++|+|++++.+..+..+++|+.|+|++|+++..       +.|+..++..+|+|+.||..
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            55555555544333455555555555555555422       12333345555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2e-14  Score=121.84  Aligned_cols=112  Identities=20%  Similarity=0.304  Sum_probs=96.6

Q ss_pred             cCCCCCCEEEccCCCCCCcCCC-CCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCE
Q psy18204         39 ATLDQFDTIDFSNNDIRKIDGF-PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKT  117 (435)
Q Consensus        39 ~~l~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~  117 (435)
                      .++.+++.|+|++|.|+.++++ ..+++|+.|++++|.|+.++ ++ ..+++|++|++++|+|+.+++ ..+..+++|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~-~~l~~L~~L~ls~N~i~~l~~-~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GF-PLLRRLKTLLVNNNRICRIGE-GLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CC-CCCSSCCEEECCSSCCCEECS-CHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-Cc-ccCcchhhhhcccccccCCCc-ccccccccccc
Confidence            4677899999999999999864 67899999999999999994 44 899999999999999999875 24567999999


Q ss_pred             EEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204        118 LCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus       118 L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      |++++|.++.++...  .+..+++|+.|++++|.++..
T Consensus        92 L~L~~N~i~~~~~l~--~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          92 LILTNNSLVELGDLD--PLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             EECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGGGGS
T ss_pred             ceecccccccccccc--ccccccccchhhcCCCccccc
Confidence            999999999876632  367899999999999998743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.5e-13  Score=113.30  Aligned_cols=112  Identities=16%  Similarity=0.115  Sum_probs=90.4

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCC-CCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNN-DIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN   89 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~   89 (435)
                      +....+.....++.+++.+..+|..+..+++|+.|++++| .|+.++  .|.++++|+.|++++|+|+.|++..|..+++
T Consensus         2 P~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3           2 PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             cCCCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccc
Confidence            3344555667788888888888877777889999999765 588886  5888999999999999999998888889999


Q ss_pred             CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcc
Q psy18204         90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI  126 (435)
Q Consensus        90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~  126 (435)
                      |++|+|++|+|+.++. ..+. ..+|+.|+|++|++.
T Consensus        82 L~~L~Ls~N~l~~l~~-~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALESLSW-KTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCSCCCS-TTTC-SCCCCEEECCSSCCC
T ss_pred             ccceeccCCCCcccCh-hhhc-cccccccccCCCccc
Confidence            9999999999988876 3444 346889999999885

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=2.1e-13  Score=127.51  Aligned_cols=135  Identities=16%  Similarity=0.169  Sum_probs=80.0

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      +..+++|+.+++++|.+..++...  +++|+.|++++|.++...  .+..++.++.|++++|.++.+++..+.++++|++
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            444556666666666666655332  456666666666665543  4566666666666666666666555566666666


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHH---HHhcCCccceeeecchhHH
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLY---VAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~---~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |+|++|+|+.++.  .+..+++|+.|+|++|+|+.++...+.   ....+++|+.|++++|+++
T Consensus       224 L~L~~N~L~~lp~--~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         224 LHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECCSSCCSSCCT--TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eeccccccccccc--ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            6666666666654  556666666666666666665432111   1234455666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=1.7e-15  Score=133.16  Aligned_cols=133  Identities=23%  Similarity=0.276  Sum_probs=112.4

Q ss_pred             CCCcceEEEecCC--CcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         17 NPVKDRELDLRGY--KIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        17 ~~~~L~~L~L~~n--~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      ....++.++++++  .+..++..+..+++|+.|+|++|.|+.++++..+++|+.|++++|.|+.++. ++..+++|+.|+
T Consensus        21 ~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~   99 (198)
T d1m9la_          21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELW   99 (198)
T ss_dssp             CCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEE
T ss_pred             cccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccc-cccccccccccc
Confidence            3456777888775  4667777788899999999999999999989999999999999999999964 435677899999


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      +++|+|+.++   .+..+++|+.|++++|.|+.++..  ..+..+++|+.|++++|++...
T Consensus       100 l~~N~i~~l~---~~~~l~~L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         100 ISYNQIASLS---GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CSEEECCCHH---HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccc---cccccccccccccccchhcccccc--ccccCCCccceeecCCCccccC
Confidence            9999999864   567889999999999999887642  2468899999999999998744

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=5.6e-13  Score=119.21  Aligned_cols=149  Identities=19%  Similarity=0.274  Sum_probs=102.4

Q ss_pred             CCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204         16 TNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL   95 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L   95 (435)
                      ..+.+|+.|++.+|+|+.+++ +..+++|+.|++++|.|+.+..+..+++|+.|++++|.++.++ .+ ..+++|+.+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l-~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AI-AGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GG-TTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcchh-HhcCCCCcEeecCCceeeccccccccccccccccccccccccc-cc-ccccccccccc
Confidence            345678888888888888865 4568888888888888888877888888888888888888774 34 67888888888


Q ss_pred             CCCcCCCCCCC-------------------CCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh
Q psy18204         96 TGNNIQELGDL-------------------DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM  156 (435)
Q Consensus        96 s~N~i~~l~~~-------------------~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~  156 (435)
                      +++.+..+..+                   ..+..+++|+.|++++|.++..+.     +..+++|+.||+++|+++.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-----l~~l~~L~~L~Ls~n~l~~l~  189 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKISDIS  189 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-----hcccccceecccCCCccCCCh
Confidence            88876654321                   123455566666666666655433     356666777777776655432


Q ss_pred             ---hhhcccEEEEecCCCc
Q psy18204        157 ---NVMFGTEIILSGDSID  172 (435)
Q Consensus       157 ---~~~~~~~l~lsgn~i~  172 (435)
                         .......+++++|.+.
T Consensus       190 ~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GGGGCTTCCEEECTTSCCC
T ss_pred             hhcCCCCCCEEECcCCcCC
Confidence               2233466666666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=3.5e-13  Score=129.59  Aligned_cols=149  Identities=24%  Similarity=0.315  Sum_probs=110.8

Q ss_pred             cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      +..+++|+.|++++|.++.++. +..+++|+.|++++|.+++++.+..+++|+.|++++|.++.+++ + ..++.++.+.
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~-~-~~~~~l~~l~  291 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-L-AGLTALTNLE  291 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-G-TTCTTCSEEE
T ss_pred             ccccCCCCEEECCCCCCCCcch-hhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCc-c-cccccccccc
Confidence            4556788999999999888764 34688899999999999888888888899999999999888754 2 5677777888


Q ss_pred             cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH---hhhhcccEEEEecCCC
Q psy18204         95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL---MNVMFGTEIILSGDSI  171 (435)
Q Consensus        95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l---~~~~~~~~l~lsgn~i  171 (435)
                      ++.|.++.+.   .+..+++++.|++++|.++.++.     +..+++|+.|++++|+++.+   ........+++++|.+
T Consensus       292 ~~~n~l~~~~---~~~~~~~l~~L~ls~n~l~~l~~-----l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         292 LNENQLEDIS---PISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             CCSSCCSCCG---GGGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cccccccccc---ccchhcccCeEECCCCCCCCCcc-----cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcC
Confidence            8877777654   45667777777777777776654     35677777777777776543   2333447777777776


Q ss_pred             ccc
Q psy18204        172 DAG  174 (435)
Q Consensus       172 ~~~  174 (435)
                      ...
T Consensus       364 ~~l  366 (384)
T d2omza2         364 SDL  366 (384)
T ss_dssp             CBC
T ss_pred             CCC
Confidence            643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=4.3e-13  Score=128.89  Aligned_cols=147  Identities=24%  Similarity=0.315  Sum_probs=117.3

Q ss_pred             ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204         12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE   91 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~   91 (435)
                      .+.+.++++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..++.++.+.++.|.++.++. + ..+++++
T Consensus       234 ~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~-~~~~~l~  310 (384)
T d2omza2         234 IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-I-SNLKNLT  310 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-G-GGCTTCS
T ss_pred             cchhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccc-c-chhcccC
Confidence            3456778899999999999998876 44688999999999999988888888889999999999888743 3 6788899


Q ss_pred             eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh---hcccEEEEec
Q psy18204         92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV---MFGTEIILSG  168 (435)
Q Consensus        92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~---~~~~~l~lsg  168 (435)
                      .|++++|++++++   .+..+++|+.|++++|.++.++.     +..+++|+.|++++|+++.+...   .....+++++
T Consensus       311 ~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~~l~~-----l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         311 YLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVSS-----LANLTNINWLSAGHNQISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             EEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCC
T ss_pred             eEECCCCCCCCCc---ccccCCCCCEEECCCCCCCCChh-----HcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCC
Confidence            9999999888765   46778899999999999888764     46789999999999988765432   2335666655


Q ss_pred             C
Q psy18204        169 D  169 (435)
Q Consensus       169 n  169 (435)
                      |
T Consensus       383 N  383 (384)
T d2omza2         383 Q  383 (384)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=1e-12  Score=122.73  Aligned_cols=127  Identities=24%  Similarity=0.355  Sum_probs=87.1

Q ss_pred             CCcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204         18 PVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI   94 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~   94 (435)
                      ++++++|+|++|+|+.++. .+..+++|+.|++++|.+..++  .|..+++|++|++++|+|+.++...   .+.|..|.
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~---~~~l~~L~  106 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELR  106 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC---CTTCCEEE
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch---hhhhhhhh
Confidence            3679999999999999884 6788999999999999999885  5889999999999999988876533   23455555


Q ss_pred             cCCCcCCCCCC-------------------------CCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecc
Q psy18204         95 LTGNNIQELGD-------------------------LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK  149 (435)
Q Consensus        95 Ls~N~i~~l~~-------------------------~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~  149 (435)
                      +.+|.+..++.                         ...+..+++|+.+++++|.++.++..      .+++|+.|++++
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~------~~~~L~~L~l~~  180 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------LPPSLTELHLDG  180 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS------CCTTCSEEECTT
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc------cCCccCEEECCC
Confidence            55555544321                         01234455666666666666655442      245555555555


Q ss_pred             hhHH
Q psy18204        150 VKLK  153 (435)
Q Consensus       150 n~l~  153 (435)
                      |..+
T Consensus       181 n~~~  184 (305)
T d1xkua_         181 NKIT  184 (305)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            5443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.35  E-value=4.2e-13  Score=125.97  Aligned_cols=90  Identities=21%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             ccccCCCCcceEEEecC-CCcc-cccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCC
Q psy18204         12 CMQYTNPVKDRELDLRG-YKIP-VIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENL   87 (435)
Q Consensus        12 ~~~~~~~~~L~~L~L~~-n~i~-~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l   87 (435)
                      ++.+.++++|++|+|++ |.+. .+|..++.+++|++|+|++|.+.++.  .+..+.+|+.+++++|.+....+..++.+
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l  148 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccC
Confidence            34555666666666654 4554 56655556666666666666665543  24455555555555555553323233556


Q ss_pred             CCCCeeecCCCcCC
Q psy18204         88 PNLETLILTGNNIQ  101 (435)
Q Consensus        88 ~~L~~L~Ls~N~i~  101 (435)
                      ++|+.+++++|.+.
T Consensus       149 ~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         149 PNLVGITFDGNRIS  162 (313)
T ss_dssp             TTCCEEECCSSCCE
T ss_pred             cccceeeccccccc
Confidence            66666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=2.9e-12  Score=114.40  Aligned_cols=135  Identities=18%  Similarity=0.263  Sum_probs=112.2

Q ss_pred             cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccc-----------
Q psy18204         13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE-----------   81 (435)
Q Consensus        13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~-----------   81 (435)
                      ..+.++++|+.|++++|.|+.++. +..+++++.+++++|.++.++++..+++|+.+.+++|.+..+..           
T Consensus        57 ~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~  135 (227)
T d1h6ua2          57 EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY  135 (227)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred             hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccccccccchhccccchhhhh
Confidence            456788999999999999988765 55688999999999999988888888999999998888665422           


Q ss_pred             ---------hhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhH
Q psy18204         82 ---------NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL  152 (435)
Q Consensus        82 ---------~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l  152 (435)
                               ..+..+++|++|++++|.+....   .+.++++|+.|+|++|.+++++.     +..+++|+.|++++|++
T Consensus       136 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~l~~l~~-----l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTSCC
T ss_pred             chhhhhchhhhhccccccccccccccccccch---hhcccccceecccCCCccCCChh-----hcCCCCCCEEECcCCcC
Confidence                     12356778999999999987755   46889999999999999998875     47899999999999998


Q ss_pred             HHHh
Q psy18204        153 KALM  156 (435)
Q Consensus       153 ~~l~  156 (435)
                      +.+.
T Consensus       208 t~i~  211 (227)
T d1h6ua2         208 SDVS  211 (227)
T ss_dssp             CBCG
T ss_pred             CCCc
Confidence            7654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.5e-12  Score=107.01  Aligned_cols=109  Identities=15%  Similarity=0.154  Sum_probs=94.6

Q ss_pred             CCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCC-ccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCE
Q psy18204         40 TLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNN-RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKT  117 (435)
Q Consensus        40 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~  117 (435)
                      .+...+.++.+++.+...+ .+..+++|+.|++++| .|+.++...|.++++|+.|+|++|+|+.+++ ..|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-ccccccccccc
Confidence            3556678999999998876 7899999999999766 5999999988999999999999999999976 48999999999


Q ss_pred             EEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204        118 LCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       118 L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                      |+|++|.++.++...    ....+|+.|++++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~----~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKT----VQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTT----TCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhh----hccccccccccCCCccc
Confidence            999999999998752    34457999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.29  E-value=1.6e-12  Score=121.87  Aligned_cols=132  Identities=19%  Similarity=0.277  Sum_probs=111.9

Q ss_pred             CcceEEEecCCCcc---cccccccCCCCCCEEEccC-CCCC-CcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204         19 VKDRELDLRGYKIP---VIENMGATLDQFDTIDFSN-NDIR-KID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET   92 (435)
Q Consensus        19 ~~L~~L~L~~n~i~---~i~~~~~~l~~L~~L~Ls~-N~l~-~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~   92 (435)
                      .+++.|+|++|.++   .+|..++.+++|++|+|++ |.++ .+| .|+++++|++|+|++|+|+.+++..+..++.|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            36999999999987   5788888999999999997 8887 566 7999999999999999999988887799999999


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcc-ccccchHHHHhcCCcc-ceeeecchhHHHH
Q psy18204         93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI-NRPHYRLYVAFKLPQV-KLLDFSKVKLKAL  155 (435)
Q Consensus        93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~l~~L-~~Ldl~~n~l~~l  155 (435)
                      +++++|.+....+ ..+..+++|+.+++++|.++ .+|..    +..+.++ +.++++.|+++..
T Consensus       130 l~l~~N~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~~----~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         130 LDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             EECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGG----GGCCCTTCCEEECCSSEEEEE
T ss_pred             cccccccccccCc-hhhccCcccceeeccccccccccccc----ccccccccccccccccccccc
Confidence            9999998865433 37899999999999999988 56653    4566665 8899999988643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2e-11  Score=109.77  Aligned_cols=135  Identities=21%  Similarity=0.271  Sum_probs=91.3

Q ss_pred             CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCc-C--CCCCCCCCCEEEcc-CCccccccchhhcCCCCCCee
Q psy18204         19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKI-D--GFPLLKRLSCLFFN-NNRIVRIAENLQENLPNLETL   93 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~ls-~N~i~~i~~~~~~~l~~L~~L   93 (435)
                      .++++|++++|.|+.++. .+..+++|++|++++|.+... +  .|..+++++.|.+. .|.+..+++..|.++++|+.|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            467888888888887764 467788888888888877653 3  46777788887765 367777777777788888888


Q ss_pred             ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC-CccceeeecchhHHHHh
Q psy18204         94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL-PQVKLLDFSKVKLKALM  156 (435)
Q Consensus        94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l-~~L~~Ldl~~n~l~~l~  156 (435)
                      ++++|.+...+....+..+..|..+...++.+..++...   +..+ ..+..|++++|+++.+.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~---~~~~~~~l~~L~l~~n~l~~i~  169 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS---FVGLSFESVILWLNKNGIQEIH  169 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTS---STTSBSSCEEEECCSSCCCEEC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccc---cccccccceeeecccccccccc
Confidence            888888876655434444555656666666666655431   2223 35677777777776543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-10  Score=104.48  Aligned_cols=139  Identities=21%  Similarity=0.201  Sum_probs=89.3

Q ss_pred             ccCCCCcceEEEecC-CCccccc-ccccCCCCCCEEEccCCCCCCcCCC---CCCCCCCEEEccCCccccccchhhcCCC
Q psy18204         14 QYTNPVKDRELDLRG-YKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGF---PLLKRLSCLFFNNNRIVRIAENLQENLP   88 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~-n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~~l---~~l~~L~~L~ls~N~i~~i~~~~~~~l~   88 (435)
                      .|.+++++++|.+.. |.+..++ ..+..+++|+.|++++|.+...+.+   ..+..+..+..+++.+..++...|.+++
T Consensus        73 ~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~  152 (242)
T d1xwdc1          73 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  152 (242)
T ss_dssp             SEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc
Confidence            466777888887754 5666544 5567788888888888888766533   3344455556667777777666555554


Q ss_pred             -CCCeeecCCCcCCCCCCCCCCCCCCCCCEE-EeecCCccccccchHHHHhcCCccceeeecchhHHHHhh
Q psy18204         89 -NLETLILTGNNIQELGDLDPLSTLPKLKTL-CLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN  157 (435)
Q Consensus        89 -~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L-~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~  157 (435)
                       .+..|++++|+++.++.  .....+++..+ .+++|.++.++..   .+..+++|+.||+++|+++.+..
T Consensus       153 ~~l~~L~l~~n~l~~i~~--~~~~~~~l~~~~~l~~n~l~~l~~~---~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         153 FESVILWLNKNGIQEIHN--CAFNGTQLDELNLSDNNNLEELPND---VFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             SSCEEEECCSSCCCEECT--TTTTTCCEEEEECTTCTTCCCCCTT---TTTTSCCCSEEECTTSCCCCCCS
T ss_pred             ccceeeeccccccccccc--ccccchhhhccccccccccccccHH---HhcCCCCCCEEECCCCcCCccCH
Confidence             67777777777777665  22334444443 4566667776653   34567777777777777765543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.98  E-value=8.4e-10  Score=103.79  Aligned_cols=99  Identities=21%  Similarity=0.372  Sum_probs=84.0

Q ss_pred             cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204         20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN   99 (435)
Q Consensus        20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (435)
                      ++++|+|+++.++.+|..   +++|++|++++|.|+.+|..  +.+|+.|++++|+++.++. +   .+.|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~-l---p~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh-h---ccccccccccccc
Confidence            688999999999999864   56899999999999999853  4689999999999998853 2   2579999999999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204        100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPH  130 (435)
Q Consensus       100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~  130 (435)
                      +..++.   +..+++|+.|++++|.++..+.
T Consensus       110 l~~lp~---~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         110 LEKLPE---LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CSSCCC---CTTCTTCCEEECCSSCCSCCCC
T ss_pred             cccccc---hhhhccceeecccccccccccc
Confidence            998874   4678999999999999876654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.6e-11  Score=103.56  Aligned_cols=145  Identities=21%  Similarity=0.252  Sum_probs=97.5

Q ss_pred             ccccHHHHhcccccC---CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC-CCCCCCCCEEEccCCccc
Q psy18204          2 VKLTADLIVQCMQYT---NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIV   77 (435)
Q Consensus         2 ~~lt~~~i~~~~~~~---~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~ls~N~i~   77 (435)
                      -+|+++-++......   .....+.|+++++..  .+. +..+..+..++..+|.+..++. +..+++|++|+|++|+|+
T Consensus         2 ~~l~~~~ie~l~~~l~~~~~~~~~~Ldls~l~~--~~~-l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~   78 (162)
T d1koha1           2 NELKPEQVEQLKLIMSKRYDGSQQALDLKGLRS--DPD-LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLY   78 (162)
T ss_dssp             CSCCHHHHHHHHHHHHTTBCSSSCCBCCCCCSS--CTT-TTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCC
T ss_pred             CCCCHHHHHHHHHHHHhhcchhhCeeecccCCC--Cch-hhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCcccc
Confidence            355565554433211   122455667765442  222 2234444555555554444442 346889999999999999


Q ss_pred             cccc--hhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc----ccchHHHHhcCCccceeeecch
Q psy18204         78 RIAE--NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR----PHYRLYVAFKLPQVKLLDFSKV  150 (435)
Q Consensus        78 ~i~~--~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~----~~~~~~~~~~l~~L~~Ldl~~n  150 (435)
                      .+++  ..+..+++|+.|+|++|+|++++++..+. ..+|+.|++++|+++..    ..|+..++..+|+|+.||-...
T Consensus        79 ~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~v  156 (162)
T d1koha1          79 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHEL  156 (162)
T ss_dssp             CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEEC
T ss_pred             CCchhHHHHhhCCcccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCCC
Confidence            8753  44578999999999999999988764444 45799999999999753    3577778899999999985543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.83  E-value=1.1e-08  Score=96.02  Aligned_cols=121  Identities=21%  Similarity=0.316  Sum_probs=96.4

Q ss_pred             CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204         18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG   97 (435)
Q Consensus        18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (435)
                      +++|++|++++|+|+.+|..   +.+|+.|++++|.++.++.++  +.|++|++++|.|+.+|. . +.+++|+.|++++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~lp~-~-~~l~~L~~L~l~~  129 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE-L-QNSSFLKIIDVDN  129 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC-C-TTCTTCCEEECCS
T ss_pred             CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhhc--cccccccccccccccccc-h-hhhccceeecccc
Confidence            46899999999999999865   458999999999999887654  469999999999999975 3 6899999999999


Q ss_pred             CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204         98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL  155 (435)
Q Consensus        98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l  155 (435)
                      |.+...+.     ....+..+.+..+.......     +..++.++.|+++.|.....
T Consensus       130 ~~~~~~~~-----~~~~l~~l~~~~~~~~~~~~-----l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         130 NSLKKLPD-----LPPSLEFIAAGNNQLEELPE-----LQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SCCSCCCC-----CCTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCSSC
T ss_pred             cccccccc-----ccccccchhhcccccccccc-----ccccccceeccccccccccc
Confidence            99987664     24567777777776655443     35677788888888876543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.7e-09  Score=99.47  Aligned_cols=151  Identities=15%  Similarity=0.165  Sum_probs=98.0

Q ss_pred             CCCCcceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCc--CCCCCCCCCCEEEccCC-cccccc-chhhcCCCC
Q psy18204         16 TNPVKDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNN-RIVRIA-ENLQENLPN   89 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ls~N-~i~~i~-~~~~~~l~~   89 (435)
                      ....+|+.|++++|.++  .++..+..+++|+.|+|++|.++..  ..++.+++|+.|+++++ .++... ..+..++++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            34568899999988876  3566677888999999999887653  35777888999999884 666422 234467889


Q ss_pred             CCeeecCCC-cCCCCCCCCCC-CCCCCCCEEEeecC--CccccccchHHHHhcCCccceeeecchh-HHH-----Hhhhh
Q psy18204         90 LETLILTGN-NIQELGDLDPL-STLPKLKTLCLLHN--PVINRPHYRLYVAFKLPQVKLLDFSKVK-LKA-----LMNVM  159 (435)
Q Consensus        90 L~~L~Ls~N-~i~~l~~~~~l-~~l~~L~~L~L~~N--~i~~~~~~~~~~~~~l~~L~~Ldl~~n~-l~~-----l~~~~  159 (435)
                      |++|+++++ .+++......+ ..+++|+.|+++++  .++...  -..+...+|+|+.|++++|. ++.     +....
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~--l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH--HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccccccccc--ccccccccccccccccccccCCCchhhhhhcccC
Confidence            999999885 45432110112 23567888888864  343211  11244678889999888764 331     22333


Q ss_pred             cccEEEEec
Q psy18204        160 FGTEIILSG  168 (435)
Q Consensus       160 ~~~~l~lsg  168 (435)
                      ....+.+++
T Consensus       201 ~L~~L~L~~  209 (284)
T d2astb2         201 YLQHLSLSR  209 (284)
T ss_dssp             TCCEEECTT
T ss_pred             cCCEEECCC
Confidence            446677766

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-08  Score=93.84  Aligned_cols=152  Identities=18%  Similarity=0.171  Sum_probs=94.7

Q ss_pred             cCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCC-CCCCc--CC-CCCCCCCCEEEccCC-cccc--ccchhhcC
Q psy18204         15 YTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNN-DIRKI--DG-FPLLKRLSCLFFNNN-RIVR--IAENLQEN   86 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~ls~N-~i~~--i~~~~~~~   86 (435)
                      +.++++|++|+|++|.++ .....++.+++|+.|+++++ .++..  .. +..+++|+.|+++++ .++.  +...+...
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            556789999999999876 33344566889999999985 56543  22 346788999999885 4553  22233345


Q ss_pred             CCCCCeeecCCC--cCCCCCCCCCCCCCCCCCEEEeecCC-ccccccchHHHHhcCCccceeeecch-hHHH-----Hhh
Q psy18204         87 LPNLETLILTGN--NIQELGDLDPLSTLPKLKTLCLLHNP-VINRPHYRLYVAFKLPQVKLLDFSKV-KLKA-----LMN  157 (435)
Q Consensus        87 l~~L~~L~Ls~N--~i~~l~~~~~l~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~l~~L~~Ldl~~n-~l~~-----l~~  157 (435)
                      +++|+.|+++++  .+++..-.....++++|++|++++|. +++...   ..+..+++|+.|++++| .++.     +..
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~---~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhh---hhhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            678888888764  34331111123457888888888764 553221   13567888888888875 3322     222


Q ss_pred             hhcccEEEEecC
Q psy18204        158 VMFGTEIILSGD  169 (435)
Q Consensus       158 ~~~~~~l~lsgn  169 (435)
                      ......+.++|.
T Consensus       224 ~~~L~~L~l~~~  235 (284)
T d2astb2         224 IPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeeeCC
Confidence            333466666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.55  E-value=1.2e-08  Score=96.10  Aligned_cols=64  Identities=11%  Similarity=0.088  Sum_probs=33.0

Q ss_pred             ccCCCCcceEEEecCCCccccc-----------ccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCcc
Q psy18204         14 QYTNPVKDRELDLRGYKIPVIE-----------NMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRI   76 (435)
Q Consensus        14 ~~~~~~~L~~L~L~~n~i~~i~-----------~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i   76 (435)
                      .+...++|+.|+++++.+..+.           ..+..+++|+.|+|++|.+....      .+..+++|+.|++++|.+
T Consensus        54 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          54 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            3445556666666655433211           22334556666666666655421      133455666666666655


Q ss_pred             c
Q psy18204         77 V   77 (435)
Q Consensus        77 ~   77 (435)
                      +
T Consensus       134 ~  134 (344)
T d2ca6a1         134 G  134 (344)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.6e-09  Score=88.74  Aligned_cols=92  Identities=20%  Similarity=0.222  Sum_probs=70.8

Q ss_pred             ccccccccCCCCCCEEEccCCCCCCcCC----CCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCC-
Q psy18204         32 PVIENMGATLDQFDTIDFSNNDIRKIDG----FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL-  106 (435)
Q Consensus        32 ~~i~~~~~~l~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~-  106 (435)
                      ..++.....+++|++|+|++|.|+.++.    +..+++|+.|+|++|+|+.+++-.+-...+|+.|++++|.+.....- 
T Consensus        55 ~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          55 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccc
Confidence            3444555678999999999999998864    45689999999999999999774444566899999999999764321 


Q ss_pred             -----CCCCCCCCCCEEEeecCCc
Q psy18204        107 -----DPLSTLPKLKTLCLLHNPV  125 (435)
Q Consensus       107 -----~~l~~l~~L~~L~L~~N~i  125 (435)
                           ..+..+|+|+.||  ++.+
T Consensus       135 ~~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         135 STYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET--TEEC
T ss_pred             hhHHHHHHHHCCCCCEEC--cCCC
Confidence                 1256799999886  4444

>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}

class: Alpha and beta proteins (a/b)
fold: Glycerol-3-phosphate (1)-acyltransferase
superfamily: Glycerol-3-phosphate (1)-acyltransferase
family: Glycerol-3-phosphate (1)-acyltransferase
domain: Glycerol-3-phosphate (1)-acyltransferase
species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]

Probab=98.49  E-value=1.4e-08  Score=94.85  Aligned_cols=195  Identities=11%  Similarity=0.102  Sum_probs=110.6

Q ss_pred             CcccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCccchhhhhhceeccccChH------------
Q psy18204        171 IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD------------  238 (435)
Q Consensus       171 i~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~G~~~~~~~~ifl~R~~~------------  238 (435)
                      +...++.++++||++.+|+.+++.+...........+.+++|..+...|++||.+...+.+++.|+..            
T Consensus       126 l~~g~nVIlvSNHqS~~D~~il~~ll~~~~~~l~r~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~~~~  205 (367)
T d1iuqa_         126 LQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKR  205 (367)
T ss_dssp             HHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHH
T ss_pred             hcCCCCEEEEECCcccccHHHHHHHHhccccccccceEEEeehhhhccHHHHHHHHhCCEEEEeccccccccccccchhh
Confidence            34667889999999999999988775432211124678899999999999999999999999977632            


Q ss_pred             -HhHHHHHHHHHHhhcCCCchhhhHHHhh-hhcCccCcccc-----HHHHhhhcccccCCccccccCCCCCCCCC-EEEE
Q psy18204        239 -SDQQAMTEQLDYFHDIQHPVQEKQEAAA-LFKSKKGKELQ-----KEISKKAKTFVPGAALQDLSNIPTGNQLN-AVYD  310 (435)
Q Consensus       239 -~d~~~~~~~~~~l~~~~~~~~~~~~~~~-~f~~~eG~~~~-----~~l~pr~~~~~~~~~~~~l~~~~~~~~~~-~vyD  310 (435)
                       .+.+.++...+.+.+          +.. +..+||||+-.     ..++|-  .|.++ +......+.....+. .||+
T Consensus       206 ~~~~~al~~~~~lL~~----------Gg~~v~IfPEGTRsr~~~~dg~l~p~--~F~~~-~~~~~~~LA~~sgvP~hV~P  272 (367)
T d1iuqa_         206 KANTRSLKEMALLLRG----------GSQLIWIAPSGGRDRPDPSTGEWYPA--PFDAS-SVDNMRRLIQHSDVPGHLFP  272 (367)
T ss_dssp             HHHHHHHHHHHHHHHH----------CCCEEEECTTCSCCCBCTTTCCBCCC--CCCHH-HHHHHHHHHHTSSSCEEEEE
T ss_pred             hhhhHHHHHHHHHhhc----------CCeEEEEeccCcccCccccccccccc--ccCcc-chHHHHHHHhcCCCCceEec
Confidence             122233333333322          222 34889999531     112210  11110 000000001112344 5999


Q ss_pred             EEeecCCCCCC-CccccccCC----CCCeEEEEEEE-EeCCCCC--C----CCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy18204        311 ITVGYLGTIPQ-SEMDAVHGK----FPSQAHFHIKK-YSTDSLP--V----SDTDAMKAWLNQIWAEKEAHLNRFYDKGY  378 (435)
Q Consensus       311 ~Ti~Y~~~~~~-~~~~~l~g~----~p~~v~i~~~~-~~i~~ip--~----~~~~~~~~wl~~~~~eKd~ll~~~~~~g~  378 (435)
                      ++|.+.+..+| .-..--.|.    ....|.|.+-. +.+++..  .    +.++++.+|+++.++|+...|++.+..+.
T Consensus       273 vai~~~d~~pP~~~v~~~ige~R~~~~~~V~i~~G~pId~~~~~~~~~~~~e~~ea~~k~l~d~v~eq~~~Lk~ai~gk~  352 (367)
T d1iuqa_         273 LALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQ  352 (367)
T ss_dssp             EEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhcccccCCCcccccchhhccccCCCceeEEeCCCcchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99987765443 221111111    12234443311 2222211  1    12357899999999999999999987653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.48  E-value=2.6e-08  Score=93.78  Aligned_cols=158  Identities=16%  Similarity=0.098  Sum_probs=108.7

Q ss_pred             CCCCcceEEEecCCCcccc---------c-----ccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCc
Q psy18204         16 TNPVKDRELDLRGYKIPVI---------E-----NMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNR   75 (435)
Q Consensus        16 ~~~~~L~~L~L~~n~i~~i---------~-----~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~   75 (435)
                      ..+++|++|++++|.+...         .     ......+.|+.+++++|.++.-.      .+..++.|+.|++++|.
T Consensus       118 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~  197 (344)
T d2ca6a1         118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG  197 (344)
T ss_dssp             HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccc
Confidence            3567899999999987521         1     11235678999999999887542      25667889999999999


Q ss_pred             ccccc-----chhhcCCCCCCeeecCCCcCCCCCC--C-CCCCCCCCCCEEEeecCCccccccchH-HHHh--cCCccce
Q psy18204         76 IVRIA-----ENLQENLPNLETLILTGNNIQELGD--L-DPLSTLPKLKTLCLLHNPVINRPHYRL-YVAF--KLPQVKL  144 (435)
Q Consensus        76 i~~i~-----~~~~~~l~~L~~L~Ls~N~i~~l~~--~-~~l~~l~~L~~L~L~~N~i~~~~~~~~-~~~~--~l~~L~~  144 (435)
                      |+.-.     ...+..+++|+.|+|++|.|+....  + ..+..+++|+.|+|++|.|+....... ..+.  ..++|+.
T Consensus       198 i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~  277 (344)
T d2ca6a1         198 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT  277 (344)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCE
Confidence            87421     2223678899999999999865321  1 246778999999999999875432211 1222  2467999


Q ss_pred             eeecchhHHH-----Hhh-----hhcccEEEEecCCCcc
Q psy18204        145 LDFSKVKLKA-----LMN-----VMFGTEIILSGDSIDA  173 (435)
Q Consensus       145 Ldl~~n~l~~-----l~~-----~~~~~~l~lsgn~i~~  173 (435)
                      ||+++|.+..     +..     ......+.++||.+..
T Consensus       278 L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         278 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             EECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            9999998743     222     2345788999888753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.7e-08  Score=96.42  Aligned_cols=109  Identities=18%  Similarity=0.244  Sum_probs=79.5

Q ss_pred             CcceEEEecCCCcccc--cccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCcccccc-----chhhc
Q psy18204         19 VKDRELDLRGYKIPVI--ENMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVRIA-----ENLQE   85 (435)
Q Consensus        19 ~~L~~L~L~~n~i~~i--~~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~-----~~~~~   85 (435)
                      ++|+.||+++|+|+..  ...+..+.++++|+|++|.|+...      .+..+++|+.|+|++|.|+..+     ..+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3688999999999853  455666788999999999887432      3567888999999999987422     22212


Q ss_pred             CCCCCCeeecCCCcCCCCCC---CCCCCCCCCCCEEEeecCCccc
Q psy18204         86 NLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLHNPVIN  127 (435)
Q Consensus        86 ~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~  127 (435)
                      ...+|++|+|++|.|++...   ...+..+++|+.|++++|.++.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            34579999999998876431   1246778889999999988764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.2e-07  Score=91.60  Aligned_cols=158  Identities=14%  Similarity=0.120  Sum_probs=108.7

Q ss_pred             cCCCCcceEEEecCCCccccc-----ccccCCCCCCEEEccCCCCCCcC------C-CCCCCCCCEEEccCCccccccc-
Q psy18204         15 YTNPVKDRELDLRGYKIPVIE-----NMGATLDQFDTIDFSNNDIRKID------G-FPLLKRLSCLFFNNNRIVRIAE-   81 (435)
Q Consensus        15 ~~~~~~L~~L~L~~n~i~~i~-----~~~~~l~~L~~L~Ls~N~l~~l~------~-l~~l~~L~~L~ls~N~i~~i~~-   81 (435)
                      +.....++.|++++|.+....     ..+...+.+..+++++|.++...      . ......|+.+++++|.++.... 
T Consensus       251 ~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~  330 (460)
T d1z7xw1         251 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS  330 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhh
Confidence            445678999999999987432     23445788999999999986431      1 2345689999999999885432 


Q ss_pred             ---hhhcCCCCCCeeecCCCcCCCCCC--C-CCC-CCCCCCCEEEeecCCccccccch-HHHHhcCCccceeeecchhHH
Q psy18204         82 ---NLQENLPNLETLILTGNNIQELGD--L-DPL-STLPKLKTLCLLHNPVINRPHYR-LYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus        82 ---~~~~~l~~L~~L~Ls~N~i~~l~~--~-~~l-~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                         .....+++|++|+|++|+|++.+.  + +.+ ...+.|+.|+|++|.|+...... ...+..+++|+.||+++|.++
T Consensus       331 ~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         331 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence               233567899999999999865221  0 122 24677999999999998532111 124567899999999999875


Q ss_pred             H-----Hhhh-----hcccEEEEecCCCc
Q psy18204        154 A-----LMNV-----MFGTEIILSGDSID  172 (435)
Q Consensus       154 ~-----l~~~-----~~~~~l~lsgn~i~  172 (435)
                      .     +.+.     .....+.+.++.+.
T Consensus       411 ~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         411 DAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            4     2111     12356777776665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=2.2e-06  Score=71.61  Aligned_cols=94  Identities=12%  Similarity=-0.024  Sum_probs=49.4

Q ss_pred             CCCCCCCCEEEccCCcccccc----chhhcCCCCCCeeecCCCcCCCCCC---CCCCCCCCCCCEEEeecCCccccccc-
Q psy18204         60 FPLLKRLSCLFFNNNRIVRIA----ENLQENLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLHNPVINRPHY-  131 (435)
Q Consensus        60 l~~l~~L~~L~ls~N~i~~i~----~~~~~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~~~~~-  131 (435)
                      +...+.|+.|+|++|.++.-.    ...+...+.|+.|+|++|.|+.-+.   ...+...+.|+.|++++|.+..+... 
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            344455566666666555211    1112345566666666666654221   12345566677777776665543211 


Q ss_pred             ---hHHHHhcCCccceeeecchhHH
Q psy18204        132 ---RLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       132 ---~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                         -..++...++|+.|+++.+...
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHhCCCccEeeCcCCCch
Confidence               1224456677777777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=3.6e-06  Score=70.18  Aligned_cols=110  Identities=9%  Similarity=0.122  Sum_probs=80.9

Q ss_pred             CCCCcceEEEecCC-Cccc--cc---ccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCccccccc--
Q psy18204         16 TNPVKDRELDLRGY-KIPV--IE---NMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVRIAE--   81 (435)
Q Consensus        16 ~~~~~L~~L~L~~n-~i~~--i~---~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~~--   81 (435)
                      .+.++|++|+|+++ .++.  +.   ..+...++|+.|+|++|.+..-.      .+...+.|+.|+|++|.|+.-..  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35679999999985 4652  22   34556788999999999997532      35567889999999999985321  


Q ss_pred             --hhhcCCCCCCeeecCCCcCCCCCC------CCCCCCCCCCCEEEeecCCc
Q psy18204         82 --NLQENLPNLETLILTGNNIQELGD------LDPLSTLPKLKTLCLLHNPV  125 (435)
Q Consensus        82 --~~~~~l~~L~~L~Ls~N~i~~l~~------~~~l~~l~~L~~L~L~~N~i  125 (435)
                        ......++|++|+|++|++..++.      .+.+...+.|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence              123677889999999998877652      12445678899999877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.20  E-value=3e-05  Score=64.16  Aligned_cols=115  Identities=12%  Similarity=0.072  Sum_probs=60.0

Q ss_pred             cCCCCCCEEEccC-CCCCCcC------CCCCCCCCCEEEccCCcccccc----chhhcCCCCCCeeecCCCcCCCCCC--
Q psy18204         39 ATLDQFDTIDFSN-NDIRKID------GFPLLKRLSCLFFNNNRIVRIA----ENLQENLPNLETLILTGNNIQELGD--  105 (435)
Q Consensus        39 ~~l~~L~~L~Ls~-N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~----~~~~~~l~~L~~L~Ls~N~i~~l~~--  105 (435)
                      .+.++|+.|+|++ +.|+.-.      .+...++|+.|++++|.++.-.    ...+...+.|+.|++++|.++.-+.  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3445666666665 3443221      2445566666666666665311    1122455667777777766643221  


Q ss_pred             -CCCCCCCCCCCEEEe--ecCCccccc-cchHHHHhcCCccceeeecchhHH
Q psy18204        106 -LDPLSTLPKLKTLCL--LHNPVINRP-HYRLYVAFKLPQVKLLDFSKVKLK  153 (435)
Q Consensus       106 -~~~l~~l~~L~~L~L--~~N~i~~~~-~~~~~~~~~l~~L~~Ldl~~n~l~  153 (435)
                       ...+...++|+.++|  ++|.+.... ..-...+...++|+.|+++.+...
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence             124455666765444  455554321 111224556777777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.06  E-value=5.8e-05  Score=62.39  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=78.8

Q ss_pred             CCCCcceEEEecC-CCccc--c---cccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCcccc-----
Q psy18204         16 TNPVKDRELDLRG-YKIPV--I---ENMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVR-----   78 (435)
Q Consensus        16 ~~~~~L~~L~L~~-n~i~~--i---~~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~-----   78 (435)
                      .+.++|++|+|++ +.|+.  +   -..+...++|+.|+|++|.++.-.      .+...+.++.|++++|.++.     
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3567999999998 45752  2   244557889999999999997542      35667899999999999874     


Q ss_pred             ccchhhcCCCCCCeeec--CCCcCCCCCC---CCCCCCCCCCCEEEeecCCcc
Q psy18204         79 IAENLQENLPNLETLIL--TGNNIQELGD---LDPLSTLPKLKTLCLLHNPVI  126 (435)
Q Consensus        79 i~~~~~~~l~~L~~L~L--s~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~  126 (435)
                      +...+ ...++|+.++|  ++|.+.+-..   .+.+...++|+.|++..+...
T Consensus        94 l~~~l-~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          94 LVEAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHH-HhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            22333 67788987555  5677755221   124567889999999877643