Psyllid ID: psy1840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MRRSVRETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMGPCSRAASRILVFWLFGLLDKICTIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRTPDLKVGGSNPRQVITGTDMLRHRPHESKVSLALSSLSIADIQMLRPTNRS
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEEccEEEEEcccccHHHHccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccEEEEEEccccHHHHcccccccHHcccccccccHHHHccccccccccccccccccccHHHHHHHHHHccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccEEcccHHcccEEEcccEEEEEEcccccHHHHHcccccccccccccEEEccHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHcEEEEEEcccccEEEEEcccccEEHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mrrsvreteaitpnplspfnipigsisvnttASVGMihlhdseiishgnlrssnclidsrwVLQIADFGLHafkagqdetgQERKLRRRKlykapellrqphlprgtqkgdvySFGLVLYEVIgrqgpwghlrmtdeEIITsvtqgsglrpdtssldcapsIIACMRTcweedpelrpdlRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEgewtdwtaslrrrpkmgpcsrAASRILVFWLFGLLDKICTIFVFLSETKAENWALHQGRIQDFGFwafwftgqnlhhfrvpglvQERTNQLTQEKKKTDALLHRmlprsvseslkrgdfvepesfdsvtiYFSDIVGftqlsaestetgrvttrdsrrtpdlkvggsnprqvitgtdmlrhrphesKVSLALSSlsiadiqmlrptnrs
Flexible Loop (DISEMBL)
mrrsvreteaitpnplspfnipiGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAfkagqdetgqerklRRRKlykapellrqphlprgtqkgdVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSvtqgsglrpdtssldcAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMGPCSRAASRILVFWLFGLLDKICTIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQekkktdallhrmlprsvseslkrgdfvePESFDSVTIYFSDIVGftqlsaestetgrvttrdsrrtpdlkvggsnprqvitgtdmlrhrPHESKVslalsslsiadiqmlrptnrs
Low Complexity Region (SEG)
MRRSVRETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMGPCSRAASRILVFWLFGLLDKICTIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRTPDLKVGGSNPRQVITGTDMLRHRPHESKVslalsslsIADIQMLRPTNRS
Disordered region (IsUnstruct)
******************FNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKA********************************QKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS*L****SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMGPCSRAASRILVFWLFGLLDKICTIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQ**********************************V**ESFDSVTIYFSDIVGFTQL********************************************************************
Disordered Region (DISOPRED)
*RRSVRETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD**GQERKLRRRKLYKAPELLRQP*****TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRR*******************FGLLDKICT*************ALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRTPDLKVGGSNPRQVITGTDMLRHRPHESKVSLALSSLSIAD***L******
Disordered Region (DISEMBL)
*********AITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ********LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMGPCSRAASRILVFWLFGLLDKICTIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLS**********************GGSNPRQVITGTDMLRHRPHESKVSLALSSLSIADIQMLRPTNRS
Disordered Region (DISPRO)
****VRETE*ITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMGP**RAASRILVFWLFGLLDKICTIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRTPDLKVGGSNPRQVITGTDMLRHRPHESKVSLALSSLSIADI*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRSVRETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMGPCSRAASRILVFWLFGLLDKICTIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRTPDLKVGGSNPRQVITGTDMLRHRPHESKVSLALSSLSIADIQMLRPTNRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q07553	1163	Guanylate cyclase 32E OS=	yes	N/A	0.460	0.167	0.586	3e-60
P11528	986	Resact receptor OS=Arbaci	N/A	N/A	0.423	0.181	0.465	2e-38
P16065	1125	Speract receptor OS=Stron	no	N/A	0.453	0.170	0.425	1e-36
P55202	1050	Atrial natriuretic peptid	N/A	N/A	0.423	0.170	0.427	1e-33
P18910	1057	Atrial natriuretic peptid	yes	N/A	0.420	0.168	0.432	1e-33
P18293	1057	Atrial natriuretic peptid	yes	N/A	0.420	0.168	0.432	3e-33
P16066	1061	Atrial natriuretic peptid	yes	N/A	0.420	0.167	0.427	9e-33
P46197	1047	Atrial natriuretic peptid	no	N/A	0.423	0.170	0.410	2e-30
O19179	1109	Retinal guanylyl cyclase	no	N/A	0.420	0.160	0.406	3e-30
P20594	1047	Atrial natriuretic peptid	no	N/A	0.423	0.170	0.410	3e-30

>sp|Q07553|GCY3E_DROME Guanylate cyclase 32E OS=Drosophila melanogaster GN=Gyc32E PE=1 SV=4

 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 140/203 (68%), Gaps = 8/203 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GMI+LHDSEIISHGNLRSSNCLIDSRWV QI+DFGLH  KAGQ+E  +     +R L  A
Sbjct: 638 GMIYLHDSEIISHGNLRSSNCLIDSRWVCQISDFGLHELKAGQEEPNKSELELKRALCMA 697

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-----QGSG 148
           PELLR  + P RG+QKGDVYSFG++LYE+IGR+GPWG    + EEII  V      Q   
Sbjct: 698 PELLRDAYRPGRGSQKGDVYSFGILLYEMIGRKGPWGDTAYSKEEIIQFVKCPEMLQHGV 757

Query: 149 LRPDT--SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIM 206
            RP    + LD    I  C+  CW+EDPE+RPD+R V   LKE+ AGLK NIFDNML+IM
Sbjct: 758 FRPALTHTHLDIPDYIRKCLCQCWDEDPEVRPDIRLVRMHLKELQAGLKPNIFDNMLSIM 817

Query: 207 EKYAFNLEGEWTDWTASLRRRPK 229
           EKYA+NLEG   + T  L    K
Sbjct: 818 EKYAYNLEGLVQERTNLLYEEKK 840

Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 6EC: .EC: 1EC: .EC: 2

>sp|P11528|GCY_ARBPU Resact receptor OS=Arbacia punctulata PE=1 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 122/189 (64%), Gaps = 10/189 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKL 91
           G+++LH SEI SHG+L+SSNC++D+RWVLQI D+GLH F+ GQ E    G+  KL  RKL
Sbjct: 676 GLVYLHSSEIKSHGHLKSSNCVVDNRWVLQITDYGLHEFRKGQKEDVDLGEHAKL-ARKL 734

Query: 92  YKAPELLRQ--PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS-- 147
           + APE LR+     P GT KGD+YSF ++L E+  RQ P+    +   +II  V++G   
Sbjct: 735 WTAPEHLREGKSMHPGGTPKGDIYSFSIILTEMYSRQEPFHENDLELADIIARVSKGEVP 794

Query: 148 GLRPDTSSLD-CAPS-IIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAI 205
             RP  ++++  AP  ++  +R CW EDP  RP++  V   L  +  GLK NI DNM+AI
Sbjct: 795 PYRPVLNAVNEAAPDCVLTAIRACWVEDPMERPNIIEVRTMLAPLQKGLKPNILDNMIAI 854

Query: 206 MEKYAFNLE 214
           ME+Y  NLE
Sbjct: 855 MERYTNNLE 863

Implicated as a cell-surface receptor on spermatozoa for 'resact' a chemotactic peptide, and on various other cells as a receptor for atrial natriuretic peptide.

Arbacia punctulata (taxid: 7641)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P16065|GCY_STRPU Speract receptor OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 125/202 (61%), Gaps = 10/202 (4%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKL 91
           G+++LH SEI SHG+L+SSNC++D+RWVLQI D+GL+ FK GQ +    G   KL  R+L
Sbjct: 679 GIVYLHSSEIKSHGHLKSSNCVVDNRWVLQITDYGLNEFKKGQKQDVDLGDHAKL-ARQL 737

Query: 92  YKAPELLRQP-HLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS-- 147
           + +PE LRQ   +P  G+ +GD+YSF ++L E+  RQ P+    M   +II  V  G   
Sbjct: 738 WTSPEHLRQEGSMPTAGSPQGDIYSFAIILTELYSRQEPFHENEMDLADIIGRVKSGEVP 797

Query: 148 GLRPDTSSLDCAP--SIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAI 205
             RP  ++++ A    +++ +R CW EDP  RP++  V   L  +  GLK NI DNM+AI
Sbjct: 798 PYRPILNAVNAAAPDCVLSAIRACWPEDPADRPNIMAVRTMLAPLQKGLKPNILDNMIAI 857

Query: 206 MEKYAFNLEGEWTDWTASLRRR 227
           ME+Y  NLE    + T  L++ 
Sbjct: 858 MERYTNNLEELVDERTQELQKE 879

Implicated as a cell-surface receptor on spermatozoa for 'speract' a chemotactic peptide, and on various other cells as a receptor for atrial natriuretic peptide.

Strongylocentrotus purpuratus (taxid: 7668)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P55202|ANPRB_ANGJA Atrial natriuretic peptide receptor 2 OS=Anguilla japonica GN=npr2 PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 6/185 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  LH+S I SHGNL+SSNC++DSR+VL+I D+GL +F++   E      L  +KL+ A
Sbjct: 634 GMNFLHNSYIGSHGNLKSSNCVVDSRFVLKITDYGLASFRSSC-ENEDSHALYAKKLWTA 692

Query: 95  PELL-RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGSG--L 149
           PELL    H P+GTQKGDVYSFG++L E+  R GP+    + ++ +EI+  V  G     
Sbjct: 693 PELLIYDRHPPQGTQKGDVYSFGIILQEIALRNGPFYVDGMDLSPKEIVQKVRNGQKPYF 752

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
           RP T +   +  +   M  CW EDP  RPD  ++   + ++N     +I +N+L+ ME+Y
Sbjct: 753 RPTTDTSCHSEELSILMEGCWAEDPADRPDFSYIKIFVMKLNKEGSTSILNNLLSRMEQY 812

Query: 210 AFNLE 214
           A NLE
Sbjct: 813 ANNLE 817

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Anguilla japonica (taxid: 7937)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P18910|ANPRA_RAT Atrial natriuretic peptide receptor 1 OS=Rattus norvegicus GN=Npr1 PE=1 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 113/185 (61%), Gaps = 7/185 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM+ LH+  I SHGNL+SSNC++D R+VL+I D+GL +F+  + E G    L  +KL+ A
Sbjct: 642 GMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRDPEPEQGH--TLFAKKLWTA 699

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGSG--L 149
           PELLR    P RG+Q GDVYSFG++L E+  R G +    L ++ +EII  VT+G     
Sbjct: 700 PELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFYVEGLDLSPKEIIERVTRGEQPPF 759

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
           RP          +   M+ CW EDP+ RP  + +   L++ N    +NI DN+L+ ME+Y
Sbjct: 760 RPSMDLQSHLEELGQLMQRCWAEDPQERPPFQQIRLALRKFNKENSSNILDNLLSRMEQY 819

Query: 210 AFNLE 214
           A NLE
Sbjct: 820 ANNLE 824

Receptor for the atrial natriuretic peptide NPPA/ANP and the brain natriuretic peptide NPPB/BNP which are potent vasoactive hormones playing a key role in cardiovascular homeostasis. Has guanylate cyclase activity upon binding of the ligand.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P18293|ANPRA_MOUSE Atrial natriuretic peptide receptor 1 OS=Mus musculus GN=Npr1 PE=2 SV=2

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 113/185 (61%), Gaps = 7/185 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM+ LH+  I SHGNL+SSNC++D R+VL+I D+GL +F+  + E G    L  +KL+ A
Sbjct: 642 GMLFLHNGAIGSHGNLKSSNCVVDGRFVLKITDYGLESFRDPEPEQGH--TLFAKKLWTA 699

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGSG--L 149
           PELLR    P RG+Q GDVYSFG++L E+  R G +    L ++ +EII  VT+G     
Sbjct: 700 PELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFYVEGLDLSPKEIIERVTRGEQPPF 759

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
           RP          +   M+ CW EDP+ RP  + +   L++ N    +NI DN+L+ ME+Y
Sbjct: 760 RPSMDLQSHLEELGQLMQRCWAEDPQERPPFQQIRLALRKFNKENSSNILDNLLSRMEQY 819

Query: 210 AFNLE 214
           A NLE
Sbjct: 820 ANNLE 824

Receptor for the atrial natriuretic peptide NPPA/ANP and the brain natriuretic peptide NPPB/BNP which are potent vasoactive hormones playing a key role in cardiovascular homeostasis. Has guanylate cyclase activity upon binding of the ligand.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P16066|ANPRA_HUMAN Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1

 Score =  141 bits (356), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 113/185 (61%), Gaps = 7/185 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM+ LH+  I SHGNL+SSNC++D R+VL+I D+GL +F+    E G    +  +KL+ A
Sbjct: 646 GMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRDLDPEQGH--TVYAKKLWTA 703

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGSG--L 149
           PELLR    P RG+Q GDVYSFG++L E+  R G +    L ++ +EII  VT+G     
Sbjct: 704 PELLRMASPPVRGSQAGDVYSFGIILQEIALRSGVFHVEGLDLSPKEIIERVTRGEQPPF 763

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
           RP  +       +   M+ CW EDP+ RP  + +   L++ N    +NI DN+L+ ME+Y
Sbjct: 764 RPSLALQSHLEELGLLMQRCWAEDPQERPPFQQIRLTLRKFNRENSSNILDNLLSRMEQY 823

Query: 210 AFNLE 214
           A NLE
Sbjct: 824 ANNLE 828

Receptor for the atrial natriuretic peptide NPPA/ANP and the brain natriuretic peptide NPPB/BNP which are potent vasoactive hormones playing a key role in cardiovascular homeostasis. Has guanylate cyclase activity upon binding of the ligand.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P46197|ANPRB_BOVIN Atrial natriuretic peptide receptor 2 OS=Bos taurus GN=NPR2 PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 6/185 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  LH+S I SHG+L+SSNC++DSR+VL+I D+GL +F++   E      L  +KL+ A
Sbjct: 630 GMAFLHNSIIASHGSLKSSNCVVDSRFVLKITDYGLASFRS-TAEPDDSHALYAKKLWTA 688

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGS--GL 149
           PELL    LP  G QK DVYSFG++L E+  R GP+    L ++ +EI+  V  G     
Sbjct: 689 PELLSGNPLPTTGMQKADVYSFGIILQEIALRSGPFYLEGLDLSPKEIVQKVRNGQRPYF 748

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
           RP          ++  M  CW +DP  RPD   +   ++  N     +I DN+L  ME+Y
Sbjct: 749 RPSIDRTQLNEELVLLMERCWAQDPAERPDFGQIKGFIRRFNKEGGTSILDNLLLRMEQY 808

Query: 210 AFNLE 214
           A NLE
Sbjct: 809 ANNLE 813

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|O19179|GUC2D_CANFA Retinal guanylyl cyclase 1 OS=Canis familiaris GN=GUCY2D PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 106/182 (58%), Gaps = 4/182 (2%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +LH   + +HG L+S NC++D R+VL++ D G HA          E      +L+ A
Sbjct: 657 GMRYLHHRGV-AHGRLKSRNCVVDGRFVLKVTDHG-HARLMEAQRVLLEPPSAEDQLWTA 714

Query: 95  PELLRQPHLPR-GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           PELLR P L R GT  GDV+S G+++ EV+ R  P+  L +T EE++  V     L   +
Sbjct: 715 PELLRDPALERRGTLPGDVFSLGIIMQEVVCRSAPYAMLELTPEEVVERVRSPPPLCRPS 774

Query: 154 SSLDCAP-SIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFN 212
            S+D AP   I  M+ CW E P+LRP L  +  + K +N G K NI D+ML ++E+Y+ N
Sbjct: 775 VSMDQAPVECIQLMKQCWAEHPDLRPSLGHIFDQFKSINKGRKTNIIDSMLRMLEQYSSN 834

Query: 213 LE 214
           LE
Sbjct: 835 LE 836

Canis familiaris (taxid: 9615)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P20594|ANPRB_HUMAN Atrial natriuretic peptide receptor 2 OS=Homo sapiens GN=NPR2 PE=1 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 6/185 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  LH+S I SHG+L+SSNC++DSR+VL+I D+GL +F++   E      L  +KL+ A
Sbjct: 630 GMAFLHNSIISSHGSLKSSNCVVDSRFVLKITDYGLASFRS-TAEPDDSHALYAKKLWTA 688

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGS--GL 149
           PELL    LP  G QK DVYSFG++L E+  R GP+    L ++ +EI+  V  G     
Sbjct: 689 PELLSGNPLPTTGMQKADVYSFGIILQEIALRSGPFYLEGLDLSPKEIVQKVRNGQRPYF 748

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
           RP          ++  M  CW +DP  RPD   +   ++  N     +I DN+L  ME+Y
Sbjct: 749 RPSIDRTQLNEELVLLMERCWAQDPAERPDFGQIKGFIRRFNKEGGTSILDNLLLRMEQY 808

Query: 210 AFNLE 214
           A NLE
Sbjct: 809 ANNLE 813

Receptor for the C-type natriuretic peptide NPPC/CNP hormone. Has guanylate cyclase activity upon binding of its ligand. May play a role in the regulation of skeletal growth.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
195030426	1148	GH10964 [Drosophila grimshawi] gi|193904	0.460	0.169	0.606	1e-62
270011251	2331	hypothetical protein TcasGA2_TC002175 [T	0.460	0.083	0.611	1e-62
189239742	2106	PREDICTED: similar to atrial natriuretic	0.460	0.092	0.611	1e-62
195385138	1161	GJ14934 [Drosophila virilis] gi|19414772	0.460	0.167	0.597	4e-61
242024284	1053	Guanylate cyclase 32E precursor, putativ	0.458	0.184	0.592	8e-61
170046339	1299	atrial natriuretic peptide receptor [Cul	0.460	0.150	0.592	3e-60
157109534	987	atrial natriuretic peptide receptor [Aed	0.460	0.197	0.582	5e-60
391343898	1104	PREDICTED: guanylate cyclase 32E-like [M	0.449	0.172	0.57	1e-59
158299465	1025	AGAP008848-PA [Anopheles gambiae str. PE	0.460	0.190	0.587	2e-59
195434068	1108	GK15240 [Drosophila willistoni] gi|19416	0.460	0.175	0.586	5e-59

>gi|195030426|ref|XP_001988069.1| GH10964 [Drosophila grimshawi] gi|193904069|gb|EDW02936.1| GH10964 [Drosophila grimshawi]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 143/201 (71%), Gaps = 6/201 (2%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+I+LHDSEIISHGNLRSSNCLIDSRWV QIADFGLH  KAGQDE  +     +R L  A
Sbjct: 629 GLIYLHDSEIISHGNLRSSNCLIDSRWVCQIADFGLHELKAGQDEPNKAELEVKRALSMA 688

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-----QGSG 148
           PELLR P+ P RG+QKGD+YSFG++LYE+IGR+GPWG    T+EEII  V      Q   
Sbjct: 689 PELLRDPYRPARGSQKGDIYSFGILLYEMIGRKGPWGETAYTNEEIIKFVISPDLLQHGV 748

Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEK 208
            RP  + LD    I +C+R CW+ED E+RPD+R V   LKE+ AGLK NIFDNMLAIMEK
Sbjct: 749 FRPALTYLDIPNYIRSCLRLCWDEDAEVRPDIRLVRMHLKELQAGLKPNIFDNMLAIMEK 808

Query: 209 YAFNLEGEWTDWTASLRRRPK 229
           YA+NLEG   + T  L    K
Sbjct: 809 YAYNLEGLVQERTNLLYEEKK 829

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011251|gb|EFA07699.1| hypothetical protein TcasGA2_TC002175 [Tribolium castaneum]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/198 (61%), Positives = 143/198 (72%), Gaps = 3/198 (1%)

Query: 35   GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            GMI+LHDS+IISHGNLRSSNCLIDSRWV+QI DFGLH FKA  +    + K  +R L++A
Sbjct: 1814 GMIYLHDSDIISHGNLRSSNCLIDSRWVVQITDFGLHEFKACPEGAETQSKKLKRSLWRA 1873

Query: 95   PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG--LRP 151
            PELLR P  P RGTQKGDVYSFG+VLYE+IGR+GPWG   +   EI+  V +     LRP
Sbjct: 1874 PELLRDPSPPARGTQKGDVYSFGIVLYEIIGRRGPWGDTNIEPSEILRQVIEVKEVPLRP 1933

Query: 152  DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAF 211
               +L  A  II CM+ CW E+P+ RPD+RFV  +LKEM AGLK NIFDNMLAIMEKYA+
Sbjct: 1934 PLENLGAADYIIKCMKACWHEEPDQRPDIRFVRVRLKEMQAGLKPNIFDNMLAIMEKYAY 1993

Query: 212  NLEGEWTDWTASLRRRPK 229
            NLEG   + T  L    K
Sbjct: 1994 NLEGLVQERTNQLTEEKK 2011

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239742|ref|XP_001809661.1| PREDICTED: similar to atrial natriuretic peptide receptor [Tribolium castaneum]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/198 (61%), Positives = 143/198 (72%), Gaps = 3/198 (1%)

Query: 35   GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            GMI+LHDS+IISHGNLRSSNCLIDSRWV+QI DFGLH FKA  +    + K  +R L++A
Sbjct: 1656 GMIYLHDSDIISHGNLRSSNCLIDSRWVVQITDFGLHEFKACPEGAETQSKKLKRSLWRA 1715

Query: 95   PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG--LRP 151
            PELLR P  P RGTQKGDVYSFG+VLYE+IGR+GPWG   +   EI+  V +     LRP
Sbjct: 1716 PELLRDPSPPARGTQKGDVYSFGIVLYEIIGRRGPWGDTNIEPSEILRQVIEVKEVPLRP 1775

Query: 152  DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAF 211
               +L  A  II CM+ CW E+P+ RPD+RFV  +LKEM AGLK NIFDNMLAIMEKYA+
Sbjct: 1776 PLENLGAADYIIKCMKACWHEEPDQRPDIRFVRVRLKEMQAGLKPNIFDNMLAIMEKYAY 1835

Query: 212  NLEGEWTDWTASLRRRPK 229
            NLEG   + T  L    K
Sbjct: 1836 NLEGLVQERTNQLTEEKK 1853

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385138|ref|XP_002051265.1| GJ14934 [Drosophila virilis] gi|194147722|gb|EDW63420.1| GJ14934 [Drosophila virilis]

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 141/201 (70%), Gaps = 6/201 (2%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+I+LHDSEIISHGNLRSSNCLIDSRWV QI+DFGLH  KAGQDE  +     +R L  A
Sbjct: 632 GLIYLHDSEIISHGNLRSSNCLIDSRWVCQISDFGLHELKAGQDEPNKTELELKRALCMA 691

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-----QGSG 148
           PELLR    P RG+QKGD+YSFG++LYE+IGR+GPWG    T EEII  V      Q   
Sbjct: 692 PELLRNSFRPARGSQKGDIYSFGILLYEMIGRKGPWGETAYTKEEIIKFVKSPDLLQHGV 751

Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEK 208
            RP  ++L+    I  C+R CW+EDPE+RPD+R V   LKE+ AGLK NIFDNMLAIMEK
Sbjct: 752 FRPALNTLNIPNYIRNCLRLCWDEDPEVRPDIRLVRMHLKELQAGLKPNIFDNMLAIMEK 811

Query: 209 YAFNLEGEWTDWTASLRRRPK 229
           YA+NLEG   + T  L    K
Sbjct: 812 YAYNLEGLVQERTNLLYEEKK 832

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024284|ref|XP_002432558.1| Guanylate cyclase 32E precursor, putative [Pediculus humanus corporis] gi|212518018|gb|EEB19820.1| Guanylate cyclase 32E precursor, putative [Pediculus humanus corporis]

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 149/199 (74%), Gaps = 5/199 (2%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+I+LHDS+IISHG L+SSNCLIDSRWVL ++DFGLH FKAGQ+E  ++++ +   L+ A
Sbjct: 643 GLIYLHDSDIISHGRLKSSNCLIDSRWVLLLSDFGLHEFKAGQEERKKDKEEKNL-LWTA 701

Query: 95  PELLRQPH-LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT---QGSGLR 150
           PELLR P+  PRGTQKGDVYSFG++LYE+IG+ GPWG++ +T  EIIT V     G   R
Sbjct: 702 PELLRNPNCFPRGTQKGDVYSFGILLYEIIGKHGPWGNIPLTPSEIITKVKSYQNGKPFR 761

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYA 210
           P T ++D    ++ CM +CW+EDPE RPD+R+V  KLKEM AGLK NIFDNMLAIMEKYA
Sbjct: 762 PQTQNIDAEKYVLKCMESCWDEDPEQRPDIRYVRVKLKEMQAGLKPNIFDNMLAIMEKYA 821

Query: 211 FNLEGEWTDWTASLRRRPK 229
            NLE   ++ T  L    K
Sbjct: 822 SNLEALVSERTDQLTEEKK 840

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170046339|ref|XP_001850726.1| atrial natriuretic peptide receptor [Culex quinquefasciatus] gi|167869147|gb|EDS32530.1| atrial natriuretic peptide receptor [Culex quinquefasciatus]

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 144/199 (72%), Gaps = 4/199 (2%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+I+LHDS+I SHG+LR S  LIDSRWV QIADFGLH FK+ Q+E  +  +  RR L+KA
Sbjct: 734 GLIYLHDSDIGSHGSLRPSKVLIDSRWVAQIADFGLHEFKSSQEEPAKFERELRRSLWKA 793

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT--QGSGL-R 150
           PE+LR P+ P +GTQKGDVYSFGL+LYE+IGR+GPWG + M+ +EII  V   Q  G+ R
Sbjct: 794 PEILRNPNTPSKGTQKGDVYSFGLILYEIIGRKGPWGGIGMSRQEIIARVISPQNYGIFR 853

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYA 210
           P    LD    +I C++ CW EDPE RPD+R V  KLK M AGLK+NIFDNMLAIMEKYA
Sbjct: 854 PPLCGLDAPDYVIQCLQACWAEDPEDRPDIRLVRVKLKPMQAGLKSNIFDNMLAIMEKYA 913

Query: 211 FNLEGEWTDWTASLRRRPK 229
           +NLEG   + T  L    K
Sbjct: 914 YNLEGIVQERTNQLTEEKK 932

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109534|ref|XP_001650712.1| atrial natriuretic peptide receptor [Aedes aegypti] gi|108878976|gb|EAT43201.1| AAEL005330-PA, partial [Aedes aegypti]

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/199 (58%), Positives = 144/199 (72%), Gaps = 4/199 (2%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+I+LHDS++ SHGNLRSS  LIDSRWV QI+DFGLH FK+GQDE  +  K   R L+KA
Sbjct: 581 GLIYLHDSDVGSHGNLRSSKILIDSRWVAQISDFGLHEFKSGQDEPNKFEKELHRSLWKA 640

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT--QGSGL-R 150
           PE+LR P+ P RGTQKGDVYSFG+VLYE++G +GPWG + +  +EII  V   Q  G+ R
Sbjct: 641 PEILRNPNTPSRGTQKGDVYSFGIVLYEIVGMKGPWGEINLNYQEIIARVISPQNYGIFR 700

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYA 210
           P    L+ +  +I C++ CWEE+P+ RPD+R V  KLK M AGLK NIFDNMLAIMEKYA
Sbjct: 701 PPLRGLEASDYVIQCLQACWEEEPDDRPDIRLVRVKLKPMQAGLKPNIFDNMLAIMEKYA 760

Query: 211 FNLEGEWTDWTASLRRRPK 229
           +NLEG   + T  L    K
Sbjct: 761 YNLEGIVQERTNQLTEEKK 779

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391343898|ref|XP_003746242.1| PREDICTED: guanylate cyclase 32E-like [Metaseiulus occidentalis]

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 141/200 (70%), Gaps = 10/200 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GMI++HDSEI+SHGNL+SSNCL+DSRWVLQ+ADFGLH FK GQ        L     ++A
Sbjct: 626 GMIYIHDSEIVSHGNLKSSNCLVDSRWVLQVADFGLHEFKCGQSLPNTSPLL-----WRA 680

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL---- 149
           PELLR P  P RGTQKGD+YSFG+VLYE+IGR GPWG   +  + II S+     +    
Sbjct: 681 PELLRHPSPPARGTQKGDIYSFGIVLYEIIGRAGPWGPEALPTKYIIDSLIDPPDIQNPP 740

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
           RP    LDCA  ++ C+R CW+E+PE+RPD RFV+ +L+EM AGLK NIFDNM+AIMEKY
Sbjct: 741 RPPLEVLDCADYVVRCLRECWDENPEIRPDFRFVNVRLREMQAGLKPNIFDNMIAIMEKY 800

Query: 210 AFNLEGEWTDWTASLRRRPK 229
           A+NLE    + T  L    K
Sbjct: 801 AYNLESLVQERTYQLLEEKK 820

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299465|ref|XP_319590.4| AGAP008848-PA [Anopheles gambiae str. PEST] gi|157013532|gb|EAA14802.5| AGAP008848-PA [Anopheles gambiae str. PEST]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 142/199 (71%), Gaps = 4/199 (2%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+I+LHDS++ SHGNLRSS  LIDSRWV QIADFGLH FK+ Q+E  +  K  RR L+KA
Sbjct: 608 GLIYLHDSDVGSHGNLRSSKILIDSRWVAQIADFGLHEFKSCQEEPSKFEKELRRSLWKA 667

Query: 95  PELLRQPHL-PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT---QGSGLR 150
           PELLR P+  P+GTQKGDVYSFG+VLYE+IGR+GPWG L M+ ++I+  V    +    R
Sbjct: 668 PELLRDPNCPPKGTQKGDVYSFGIVLYEIIGRKGPWGDLNMSWQDIVARVMSPEEYGIFR 727

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYA 210
           P    +D    +I  + +CWEEDPE RPD+R V  KLK M AGLK NIFDNMLAIMEKYA
Sbjct: 728 PSLRGIDAPEYVIQLLHSCWEEDPEDRPDIRLVRVKLKPMQAGLKPNIFDNMLAIMEKYA 787

Query: 211 FNLEGEWTDWTASLRRRPK 229
           +NLEG   + T  L    K
Sbjct: 788 YNLEGIVQERTNQLSEEKK 806

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195434068|ref|XP_002065025.1| GK15240 [Drosophila willistoni] gi|194161110|gb|EDW76011.1| GK15240 [Drosophila willistoni]

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 142/203 (69%), Gaps = 8/203 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GMI+LHDSEIISHGNLRSSNCLIDSRWV QI+DFGLH  K+G++E  +     +R L  A
Sbjct: 596 GMIYLHDSEIISHGNLRSSNCLIDSRWVCQISDFGLHELKSGEEEPNKTELELKRALCMA 655

Query: 95  PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-----QGSG 148
           PELLR  + P RG+QKGDVYSFG++LYE+IGR+GPWG    + EEII  V      Q   
Sbjct: 656 PELLRDSYRPARGSQKGDVYSFGILLYEMIGRKGPWGDTTYSKEEIIKFVKCPELLQHGI 715

Query: 149 LRPDT--SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIM 206
            RP    + L+    I  C+R CWEEDPE+RPD+R V  +LKE+ AGLK NIFDNMLAIM
Sbjct: 716 FRPALTHTHLNIPDYIRQCLRQCWEEDPEIRPDIRLVRMRLKELQAGLKPNIFDNMLAIM 775

Query: 207 EKYAFNLEGEWTDWTASLRRRPK 229
           EKYA+NLEG   + T  L    K
Sbjct: 776 EKYAYNLEGLVQERTNLLYEEKK 798

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
FB|FBgn0010197	1163	Gyc32E "Guanyl cyclase at 32E"	0.427	0.155	0.613	7e-75
FB|FBgn0261360	1525	CG42637 [Drosophila melanogast	0.444	0.123	0.43	1.1e-60
FB|FBgn0261688	1525	Gyc76C "Guanylyl cyclase at 76	0.444	0.123	0.43	1.1e-60
FB|FBgn0036368	1272	CG10738 [Drosophila melanogast	0.460	0.153	0.456	1.2e-59
UNIPROTKB|G3N2S3	421	NPR2 "Guanylate cyclase" [Bos	0.423	0.425	0.410	1.6e-54
UNIPROTKB|E1BN71	1064	NPR1 "Guanylate cyclase" [Bos	0.418	0.166	0.435	1.9e-52
RGD|3195	1057	Npr1 "natriuretic peptide rece	0.420	0.168	0.432	5e-52
MGI|MGI:97371	1057	Npr1 "natriuretic peptide rece	0.420	0.168	0.432	1.1e-51
UNIPROTKB|P16066	1061	NPR1 "Atrial natriuretic pepti	0.418	0.166	0.430	1.4e-51
UNIPROTKB|F1PMP1	1060	NPR1 "Guanylate cyclase" [Cani	0.418	0.166	0.430	2.2e-51

FB|FBgn0010197 Gyc32E "Guanyl cyclase at 32E" [Drosophila melanogaster (taxid:7227)]

 Score = 569 (205.4 bits), Expect = 7.0e-75, Sum P(2) = 7.0e-75
 Identities = 116/189 (61%), Positives = 136/189 (71%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
             GMI+LHDSEIISHGNLRSSNCLIDSRWV QI+DFGLH  KAGQ+E  +     +R L  A
Sbjct:   638 GMIYLHDSEIISHGNLRSSNCLIDSRWVCQISDFGLHELKAGQEEPNKSELELKRALCMA 697

Query:    95 PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-----QGSG 148
             PELLR  + P RG+QKGDVYSFG++LYE+IGR+GPWG    + EEII  V      Q   
Sbjct:   698 PELLRDAYRPGRGSQKGDVYSFGILLYEMIGRKGPWGDTAYSKEEIIQFVKCPEMLQHGV 757

Query:   149 LRPDTSS--LDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIM 206
              RP  +   LD    I  C+  CW+EDPE+RPD+R V   LKE+ AGLK NIFDNML+IM
Sbjct:   758 FRPALTHTHLDIPDYIRKCLCQCWDEDPEVRPDIRLVRMHLKELQAGLKPNIFDNMLSIM 817

Query:   207 EKYAFNLEG 215
             EKYA+NLEG
Sbjct:   818 EKYAYNLEG 826

GO:0004383 "guanylate cyclase activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS;NAS

GO:0006182 "cGMP biosynthetic process" evidence=NAS

GO:0007165 "signal transduction" evidence=ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IKR

GO:0004672 "protein kinase activity" evidence=IKR

FB|FBgn0261360 CG42637 [Drosophila melanogaster (taxid:7227)]

 Score = 444 (161.4 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
 Identities = 86/200 (43%), Positives = 131/200 (65%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK-AGQDETGQERKLRRRKLYK 93
             GMI++H+S+++ HGNL+SSNC++ SRW+LQ+ DFGLH  +   ++E+  E +  R +L++
Sbjct:   661 GMIYIHNSQLVYHGNLKSSNCVVTSRWMLQVTDFGLHELRQCAENESIGEHQHYRNQLWR 720

Query:    94 APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ----GSG- 148
             APELLR  H+  G+QKGDVY+F +++YE+  R+GP+G +    +EI+  V +    G   
Sbjct:   721 APELLRN-HI-HGSQKGDVYAFAIIMYEIFSRKGPFGQINFEPKEIVDYVKKLPLKGEDP 778

Query:   149 LRPDTSSL----DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLA 204
              RP+  S+     C   ++AC+R CW EDPE RP+   + ++LK+M  G   NI D M+ 
Sbjct:   779 FRPEVESIIEAESCPDYVLACIRDCWAEDPEERPEFSVIRNRLKKMRGGKTKNIMDQMME 838

Query:   205 IMEKYAFNLEGEWTDWTASL 224
             +MEKYA NLE   T+ T  L
Sbjct:   839 MMEKYANNLEDIVTERTRLL 858

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

FB|FBgn0261688 Gyc76C "Guanylyl cyclase at 76C" [Drosophila melanogaster (taxid:7227)]

 Score = 444 (161.4 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
 Identities = 86/200 (43%), Positives = 131/200 (65%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK-AGQDETGQERKLRRRKLYK 93
             GMI++H+S+++ HGNL+SSNC++ SRW+LQ+ DFGLH  +   ++E+  E +  R +L++
Sbjct:   661 GMIYIHNSQLVYHGNLKSSNCVVTSRWMLQVTDFGLHELRQCAENESIGEHQHYRNQLWR 720

Query:    94 APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ----GSG- 148
             APELLR  H+  G+QKGDVY+F +++YE+  R+GP+G +    +EI+  V +    G   
Sbjct:   721 APELLRN-HI-HGSQKGDVYAFAIIMYEIFSRKGPFGQINFEPKEIVDYVKKLPLKGEDP 778

Query:   149 LRPDTSSL----DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLA 204
              RP+  S+     C   ++AC+R CW EDPE RP+   + ++LK+M  G   NI D M+ 
Sbjct:   779 FRPEVESIIEAESCPDYVLACIRDCWAEDPEERPEFSVIRNRLKKMRGGKTKNIMDQMME 838

Query:   205 IMEKYAFNLEGEWTDWTASL 224
             +MEKYA NLE   T+ T  L
Sbjct:   839 MMEKYANNLEDIVTERTRLL 858

GO:0004872 "receptor activity" evidence=ISS;NAS;IDA

GO:0004383 "guanylate cyclase activity" evidence=ISS;NAS;IDA

GO:0005886 "plasma membrane" evidence=ISS;NAS

GO:0007165 "signal transduction" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IGI

GO:0009651 "response to salt stress" evidence=IMP

GO:0008188 "neuropeptide receptor activity" evidence=IDA

FB|FBgn0036368 CG10738 [Drosophila melanogaster (taxid:7227)]

 Score = 435 (158.2 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
 Identities = 94/206 (45%), Positives = 129/206 (62%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK---- 90
             G+I+LHDS I  HG L +SNCL+DSRWV+++ DFGL AFK G +++  + +    K    
Sbjct:   706 GVIYLHDSPIRFHGALCTSNCLVDSRWVVKLTDFGLFAFKQGIEDSSTDMQHMSAKCLKL 765

Query:    91 LYKAPELLRQ-PH-LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG 148
             LY+APELLRQ P  L  GTQ+GD YSFG++LYE+  R+GP+G   +T  + +  V Q   
Sbjct:   766 LYRAPELLRQGPSSLVMGTQRGDAYSFGILLYEMHVRRGPFGETGLTPMQCLQKVLQPQD 825

Query:   149 L----RPDTSSLDCAPSIIA-CMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNML 203
                  RP    L+ A   ++ C+R CW E PE RPD + +  KL+ +  G++ NIFDNM+
Sbjct:   826 YLNPYRPSLQPLETAFDCVSECLRECWAERPEDRPDFKTIRTKLRPLRKGMRPNIFDNMM 885

Query:   204 AIMEKYAFNLEGEWTDWTASLRRRPK 229
             A+MEKYA NLE    D T  L+   K
Sbjct:   886 AMMEKYANNLEALVDDRTDQLQEEKK 911

GO:0004872 "receptor activity" evidence=ISS

GO:0004383 "guanylate cyclase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006182 "cGMP biosynthetic process" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IKR

GO:0004672 "protein kinase activity" evidence=IKR

GO:0007030 "Golgi organization" evidence=IMP

GO:0045792 "negative regulation of cell size" evidence=IMP

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

UNIPROTKB|G3N2S3 NPR2 "Guanylate cyclase" [Bos taurus (taxid:9913)]

 Score = 336 (123.3 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
 Identities = 76/185 (41%), Positives = 106/185 (57%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
             GM  LH+S I SHG+L+SSNC++DSR+VL+I D+GL +F++   E      L  +KL+ A
Sbjct:     4 GMAFLHNSIIASHGSLKSSNCVVDSRFVLKITDYGLASFRSTA-EPDDSHALYAKKLWTA 62

Query:    95 PELLRQPHLPR-GTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGSG--L 149
             PELL    LP  G QK DVYSFG++L E+  R GP+    L ++ +EI+  V  G     
Sbjct:    63 PELLSGNPLPTTGMQKADVYSFGIILQEIALRSGPFYLEGLDLSPKEIVQKVRNGQRPYF 122

Query:   150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
             RP          ++  M  CW +DP  RPD   +   ++  N     +I DN+L  ME+Y
Sbjct:   123 RPSIDRTQLNEELVLLMERCWAQDPAERPDFGQIKGFIRRFNKEGGTSILDNLLLRMEQY 182

Query:   210 AFNLE 214
             A NLE
Sbjct:   183 ANNLE 187

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|E1BN71 NPR1 "Guanylate cyclase" [Bos taurus (taxid:9913)]

 Score = 365 (133.5 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
 Identities = 81/186 (43%), Positives = 115/186 (61%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
             GM+ LH+  I SHGNL+SSNC++D R+VL+I D+GL +F+  + E G    L  +KL+ A
Sbjct:   649 GMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRDPEPEQGHT--LYAKKLWTA 706

Query:    95 PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGH---LRMTDEEIITSVTQGSG-- 148
             PELLR    P RG+Q GDVYSFG++L E+  R G + H   L ++ +EII  VT+G    
Sbjct:   707 PELLRMASPPARGSQAGDVYSFGIILQEIALRSGAF-HVEGLDLSPKEIIERVTRGEQPP 765

Query:   149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEK 208
              RP  +       +   M+ CW EDP+ RP  + +   L++ N    +NI DN+L+ ME+
Sbjct:   766 FRPSLALQSHLEELGQLMQRCWAEDPQERPPFQQIRLMLRKFNRENSSNILDNLLSRMEQ 825

Query:   209 YAFNLE 214
             YA NLE
Sbjct:   826 YANNLE 831

GO:0042562 "hormone binding" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=IEA

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

RGD|3195 Npr1 "natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)" [Rattus norvegicus (taxid:10116)]

 Score = 361 (132.1 bits), Expect = 5.0e-52, Sum P(2) = 5.0e-52
 Identities = 80/185 (43%), Positives = 113/185 (61%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
             GM+ LH+  I SHGNL+SSNC++D R+VL+I D+GL +F+  + E G    L  +KL+ A
Sbjct:   642 GMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRDPEPEQGHT--LFAKKLWTA 699

Query:    95 PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGSG--L 149
             PELLR    P RG+Q GDVYSFG++L E+  R G +    L ++ +EII  VT+G     
Sbjct:   700 PELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFYVEGLDLSPKEIIERVTRGEQPPF 759

Query:   150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
             RP          +   M+ CW EDP+ RP  + +   L++ N    +NI DN+L+ ME+Y
Sbjct:   760 RPSMDLQSHLEELGQLMQRCWAEDPQERPPFQQIRLALRKFNKENSSNILDNLLSRMEQY 819

Query:   210 AFNLE 214
             A NLE
Sbjct:   820 ANNLE 824

GO:0004383 "guanylate cyclase activity" evidence=ISO;IDA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006182 "cGMP biosynthetic process" evidence=ISO;IDA

GO:0007166 "cell surface receptor signaling pathway" evidence=IMP

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=ISO;IDA

GO:0017046 "peptide hormone binding" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IMP

GO:0030828 "positive regulation of cGMP biosynthetic process" evidence=IMP

GO:0035556 "intracellular signal transduction" evidence=IDA

GO:0042417 "dopamine metabolic process" evidence=IMP

GO:0042562 "hormone binding" evidence=ISO

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=IMP

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=ISO

MGI|MGI:97371 Npr1 "natriuretic peptide receptor 1" [Mus musculus (taxid:10090)]

 Score = 358 (131.1 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
 Identities = 80/185 (43%), Positives = 113/185 (61%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
             GM+ LH+  I SHGNL+SSNC++D R+VL+I D+GL +F+  + E G    L  +KL+ A
Sbjct:   642 GMLFLHNGAIGSHGNLKSSNCVVDGRFVLKITDYGLESFRDPEPEQGHT--LFAKKLWTA 699

Query:    95 PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGSG--L 149
             PELLR    P RG+Q GDVYSFG++L E+  R G +    L ++ +EII  VT+G     
Sbjct:   700 PELLRMASPPARGSQAGDVYSFGIILQEIALRSGVFYVEGLDLSPKEIIERVTRGEQPPF 759

Query:   150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKY 209
             RP          +   M+ CW EDP+ RP  + +   L++ N    +NI DN+L+ ME+Y
Sbjct:   760 RPSMDLQSHLEELGQLMQRCWAEDPQERPPFQQIRLALRKFNKENSSNILDNLLSRMEQY 819

Query:   210 AFNLE 214
             A NLE
Sbjct:   820 ANNLE 824

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=ISO;IMP;IDA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006182 "cGMP biosynthetic process" evidence=ISO;IMP;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=ISO

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=ISO

GO:0008217 "regulation of blood pressure" evidence=IMP

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0016941 "natriuretic peptide receptor activity" evidence=ISO

GO:0017046 "peptide hormone binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030828 "positive regulation of cGMP biosynthetic process" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=ISO

GO:0042417 "dopamine metabolic process" evidence=ISO

GO:0042562 "hormone binding" evidence=ISO

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=ISO

GO:0050880 "regulation of blood vessel size" evidence=IEA

UNIPROTKB|P16066 NPR1 "Atrial natriuretic peptide receptor 1" [Homo sapiens (taxid:9606)]

 Score = 357 (130.7 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
 Identities = 80/186 (43%), Positives = 114/186 (61%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
             GM+ LH+  I SHGNL+SSNC++D R+VL+I D+GL +F+    E G    +  +KL+ A
Sbjct:   646 GMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRDLDPEQGHT--VYAKKLWTA 703

Query:    95 PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGH---LRMTDEEIITSVTQGSG-- 148
             PELLR    P RG+Q GDVYSFG++L E+  R G + H   L ++ +EII  VT+G    
Sbjct:   704 PELLRMASPPVRGSQAGDVYSFGIILQEIALRSGVF-HVEGLDLSPKEIIERVTRGEQPP 762

Query:   149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEK 208
              RP  +       +   M+ CW EDP+ RP  + +   L++ N    +NI DN+L+ ME+
Sbjct:   763 FRPSLALQSHLEELGLLMQRCWAEDPQERPPFQQIRLTLRKFNRENSSNILDNLLSRMEQ 822

Query:   209 YAFNLE 214
             YA NLE
Sbjct:   823 YANNLE 828

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0050880 "regulation of blood vessel size" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0017046 "peptide hormone binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030828 "positive regulation of cGMP biosynthetic process" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042417 "dopamine metabolic process" evidence=IEA

GO:0048662 "negative regulation of smooth muscle cell proliferation" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0042312 "regulation of vasodilation" evidence=NAS

GO:0016525 "negative regulation of angiogenesis" evidence=TAS

GO:0035810 "positive regulation of urine volume" evidence=TAS

GO:0043114 "regulation of vascular permeability" evidence=TAS

GO:0007589 "body fluid secretion" evidence=TAS

GO:0035815 "positive regulation of renal sodium excretion" evidence=TAS

GO:0042562 "hormone binding" evidence=IPI

GO:0007166 "cell surface receptor signaling pathway" evidence=NAS

GO:0008528 "G-protein coupled peptide receptor activity" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0016941 "natriuretic peptide receptor activity" evidence=IDA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006182 "cGMP biosynthetic process" evidence=IDA

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=IDA

UNIPROTKB|F1PMP1 NPR1 "Guanylate cyclase" [Canis lupus familiaris (taxid:9615)]

 Score = 361 (132.1 bits), Expect = 2.2e-51, Sum P(2) = 2.2e-51
 Identities = 80/186 (43%), Positives = 115/186 (61%)

Query:    35 GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
             GM+ LH+  I SHGNL+SSNC++D R+VL+I DFGL +F+  + E G    L  +KL+ A
Sbjct:   645 GMLFLHNGAICSHGNLKSSNCVVDGRFVLKITDFGLESFRDPEPEQGHI--LYAKKLWTA 702

Query:    95 PELLRQPHLP-RGTQKGDVYSFGLVLYEVIGRQGPWGH---LRMTDEEIITSVTQGSG-- 148
             PELLR    P RG+Q GDVYSFG++L E+  R G + H   L ++ +EI+  VT+G    
Sbjct:   703 PELLRMASPPARGSQAGDVYSFGIILQEIALRSGVF-HVEGLDLSPKEIVERVTRGEQPP 761

Query:   149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEK 208
              RP  +       +   M+ CW E+P+ RP  + +   L++ N    +NI DN+L+ ME+
Sbjct:   762 FRPSLALQSHLEELGQLMQRCWAEEPQERPPFQQIRLMLRKFNRESSSNILDNLLSRMEQ 821

Query:   209 YAFNLE 214
             YA NLE
Sbjct:   822 YANNLE 827

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q07553	GCY3E_DROME	4, ., 6, ., 1, ., 2	0.5862	0.4609	0.1676	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.6.1.2	LOW CONFIDENCE prediction!
3rd Layer	4.6.1	0.691

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	423
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-21
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	4e-21
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-20
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	5e-20
smart00044	194	smart00044, CYCc, Adenylyl- / guanylyl cyclase, ca	1e-16
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	7e-16
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-15
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	4e-15
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	5e-15
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-14
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	5e-14
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	5e-14
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-13
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	4e-13
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	5e-13
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	5e-13
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	8e-13
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	8e-13
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	1e-12
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	2e-12
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	2e-12
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	3e-12
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	4e-12
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	5e-12
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	7e-12
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	9e-12
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-11
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-11
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-11
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-11
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-11
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-11
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-11
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	5e-11
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	5e-11
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	6e-11
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	6e-11
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	6e-11
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	8e-11
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	8e-11
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	1e-10
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-10
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-10
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	2e-10
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	3e-10
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	4e-10
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	4e-10
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	5e-10
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	9e-10
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-09
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	1e-09
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	1e-09
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-09
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-09
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	4e-09
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	6e-09
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-08
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	1e-08
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	1e-08
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	1e-08
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	1e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-08
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	2e-08
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	4e-08
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	6e-08
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	6e-08
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	7e-08
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	8e-08
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	1e-07
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-07
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	2e-07
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	3e-07
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-07
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	4e-07
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	4e-07
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	4e-07
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	7e-07
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	8e-07
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	9e-07
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	1e-06
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	1e-06
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-06
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-06
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	3e-06
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-06
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-06
pfam00211	184	pfam00211, Guanylate_cyc, Adenylate and Guanylate	5e-06
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	5e-06
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	7e-06
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	7e-06
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	1e-05
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-05
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-05
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	2e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-05
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	2e-05
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-05
PHA02882	294	PHA02882, PHA02882, putative serine/threonine kina	3e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-05
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	6e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	7e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	8e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	8e-05
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	8e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	9e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-04
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	1e-04
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	1e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-04
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	1e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	2e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	2e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	3e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	4e-04
pfam07701	209	pfam07701, HNOBA, Heme NO binding associated	4e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	4e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	4e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	4e-04
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	5e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	5e-04
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	5e-04
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	5e-04
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	6e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	6e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	7e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	7e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	8e-04
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	8e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	0.001
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.001
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	0.001
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	0.001
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	0.001
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	0.001
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	0.002
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.002
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	0.002
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.003
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.003
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	0.003
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	0.003
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	0.004
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	0.004
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	0.004
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	0.004

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 93.3 bits (233), Expect = 1e-21
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 14/156 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L     + H +L + NCL+    V++I+DFGL       D   +    +    + A
Sbjct: 114 GMEYLESKNFV-HRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKWMA 172

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL-RP 151
           PE L+       T K DV+SFG++L+E+   G Q P+    M++EE++  +  G  L RP
Sbjct: 173 PESLKDGKF---TSKSDVWSFGVLLWEIFTLGEQ-PYP--GMSNEEVLELLEDGYRLPRP 226

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
           +    +C   +   M  CW  DPE RP    +   L
Sbjct: 227 E----NCPDELYELMLQCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 91.8 bits (229), Expect = 4e-21
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 18/159 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L   + + H +L + NCL+    V++I+DFGL    +           KL  R + 
Sbjct: 117 GMEYLASKKFV-HRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWM- 174

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL- 149
            APE L+       T K DV+SFG++L+E+   G   P+    +++EE++  + +G  L 
Sbjct: 175 -APESLKDGIF---TSKSDVWSFGVLLWEIFTLGAT-PYP--GLSNEEVLEYLRKGYRLP 227

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           +P+     C   +   M +CW+ DPE RP    +  +L+
Sbjct: 228 KPE----YCPDELYELMLSCWQLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 41/169 (24%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM +L     I H +L + NCL+    V++I+DFGL             R L     Y+ 
Sbjct: 114 GMEYLESKNFI-HRDLAARNCLVGENLVVKISDFGL------------SRDLYDDDYYRK 160

Query: 94  ----------APELLRQPHLPRG--TQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEI 139
                     APE L+      G  T K DV+SFG++L+E+   G Q P+    M++EE+
Sbjct: 161 RGGKLPIRWMAPESLK-----EGKFTSKSDVWSFGVLLWEIFTLGEQ-PYPG--MSNEEV 212

Query: 140 ITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
           +  +  G  L +P     +C P +   M  CW EDPE RP    +   L
Sbjct: 213 LEYLKNGYRLPQPP----NCPPELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 88.4 bits (220), Expect = 5e-20
 Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 41/169 (24%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM +L     I H +L + NCL+    V++I+DFGL             R L     YK 
Sbjct: 115 GMEYLESKNFI-HRDLAARNCLVGENLVVKISDFGL------------SRDLYDDDYYKV 161

Query: 94  ----------APELLRQPHLPRG--TQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEI 139
                     APE L+      G  T K DV+SFG++L+E+   G +   G   M++ E+
Sbjct: 162 KGGKLPIRWMAPESLK-----EGKFTSKSDVWSFGVLLWEIFTLGEEPYPG---MSNAEV 213

Query: 140 ITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
           +  + +G  L +P     +C P +   M  CW EDPE RP    +   L
Sbjct: 214 LEYLKKGYRLPKPP----NCPPELYKLMLQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 308 EKKKTDALLHRMLPRSVSESLKRG-DFVEPESFDSVTIYFSDIVGFTQLSAEST 360
           EKKKTD LL ++LP SV+E LKRG   V  ES+D+VTI FSDIVGFT L + ST
Sbjct: 2   EKKKTDRLLDQLLPASVAEQLKRGGSPVPAESYDNVTILFSDIVGFTSLCSTST 55

Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes. Length = 194

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE--TGQERKLRRRKLY 92
           GM +L     I H +L + N L+    V +IADFGL A     DE    +  K   +  +
Sbjct: 115 GMAYLESRNYI-HRDLAARNILVGENLVCKIADFGL-ARLIEDDEYTAREGAKFPIK--W 170

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL- 149
            APE        R T K DV+SFG++L E++  GR    G   MT+ E++  V +G  + 
Sbjct: 171 TAPEAAN---YGRFTIKSDVWSFGILLTEIVTYGRVPYPG---MTNREVLEQVERGYRMP 224

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
           RP     +C   +   M  CW++DPE RP   ++   L
Sbjct: 225 RPP----NCPEELYDLMLQCWDKDPEERPTFEYLQSFL 258

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRR--KLY 92
           G+ +LH S  I H +L+  N L+D   V++IADFGL    A +                Y
Sbjct: 110 GLEYLH-SNGIIHRDLKPENILLDENGVVKIADFGL----AKKLLKSSSSLTTFVGTPWY 164

Query: 93  KAPELLR--QPHLPRGTQKGDVYSFGLVLYEVIGRQGPW-GHLRMTDEEIITSVTQGSGL 149
            APE+L     +      K DV+S G++LYE++  + P+ G   +   ++I  +      
Sbjct: 165 MAPEVLLGGNGY----GPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLE 220

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
             +      +      ++ C  +DP  RP
Sbjct: 221 FDEPKWSSGSEEAKDLIKKCLNKDPSKRP 249

Length = 260

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L +   I H +L + N L+    V ++ADFGL            ++K+  +  + A
Sbjct: 116 GMAYLEEQNSI-HRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYK--WTA 172

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSGL-RPD 152
           PE          + K DV+SFG++LYE+    Q P+    M + E+   +T G  +  P 
Sbjct: 173 PEAASHGTF---STKSDVWSFGILLYEMFTYGQVPYPG--MNNHEVYDQITAGYRMPCP- 226

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
                C   I   M  CW  +PE RP  + +  +L
Sbjct: 227 ---AKCPQEIYKIMLECWAAEPEDRPSFKALREEL 258

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 74.9 bits (184), Expect = 5e-15
 Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 36/199 (18%)

Query: 3   RSVRETEAITPNPLSPFNIPIG-SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW 61
            S         NPL P +      I+    A  GM +L + + + H +L + NCL+    
Sbjct: 112 HSTSSARKCGLNPL-PLSCTEQLCIAKQVAA--GMAYLSERKFV-HRDLATRNCLVGENM 167

Query: 62  VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPE--LLRQPHLP-------RGTQKGDV 112
           V++IADFGL             R +     YKA E   +    +P       R T + DV
Sbjct: 168 VVKIADFGL------------SRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDV 215

Query: 113 YSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTC 169
           +++G+VL+E+   G Q  +G   M  EE+I  V  G+ L  PD    +C   +   MR C
Sbjct: 216 WAYGVVLWEIFSYGMQPYYG---MAHEEVIYYVRDGNVLSCPD----NCPLELYNLMRLC 268

Query: 170 WEEDPELRPDLRFVHHKLK 188
           W + P  RP    ++  L+
Sbjct: 269 WSKLPSDRPSFASINRILQ 287

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 43/154 (27%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLYK 93
           G+ +LH + II H +L+  N L+DS    +++ADFGL   K    +    + +     Y 
Sbjct: 104 GLEYLHSNGII-HRDLKPENILLDSDNGKVKLADFGL--SKLLTSDKSLLKTIVGTPAYM 160

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           APE+L        ++K D++S G++LYE+                               
Sbjct: 161 APEVLLG--KGYYSEKSDIWSLGVILYEL------------------------------- 187

Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
                 P +   +R   ++DPE RP  + +   L
Sbjct: 188 ------PELKDLIRKMLQKDPEKRPSAKEILEHL 215

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 71.6 bits (175), Expect = 5e-14
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 19/179 (10%)

Query: 15  PLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK 74
                 +    +++ +  + GM++L     + H +L + NCL+    V++I DFG+    
Sbjct: 115 APGQLTLG-QMLAIASQIASGMVYLASLHFV-HRDLATRNCLVGQGLVVKIGDFGMSRDI 172

Query: 75  AGQD--ETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWG 130
              D    G    L  R +     L R     + T + D++SFG+VL+E+   G+Q PW 
Sbjct: 173 YSTDYYRVGGRTMLPIRWMPPESILYR-----KFTTESDIWSFGVVLWEIFTYGKQ-PWY 226

Query: 131 HLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            L  T  E I  +TQG  L RP T    C P + A M+ CW+ +P+ R  ++ +H +L+
Sbjct: 227 QLSNT--EAIECITQGRELERPRT----CPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 71.3 bits (175), Expect = 5e-14
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 19/156 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L +   + H +L + N L+    V +++DFGL A +A Q +   +  ++    + A
Sbjct: 114 GMEYLEEKNFV-HRDLAARNVLVSEDLVAKVSDFGL-AKEASQGQDSGKLPVK----WTA 167

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGLR-P 151
           PE LR     + + K DV+SFG++L+E+   GR  P+   R+  ++++  V +G  +  P
Sbjct: 168 PEALR---EKKFSTKSDVWSFGILLWEIYSFGRV-PYP--RIPLKDVVPHVEKGYRMEAP 221

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
           +     C P +   M+ CWE DP  RP  + +  +L
Sbjct: 222 EG----CPPEVYKVMKDCWELDPAKRPTFKQLREQL 253

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 70.0 bits (171), Expect = 1e-13
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 19/158 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +L +S+ + H +L + N L+    V +++DFGL      G D +    K      + 
Sbjct: 112 GMEYL-ESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVK------WT 164

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           APE L+       + K DV+S+G++L+EV   GR  P+   +M+ +E+   V +G  + P
Sbjct: 165 APEALKHKKF---SSKSDVWSYGVLLWEVFSYGRA-PYP--KMSLKEVKECVEKGYRMEP 218

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
                 C   +   M +CWE +P+ RP    +  KL++
Sbjct: 219 PE---GCPADVYVLMTSCWETEPKKRPSFHKLREKLEK 253

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 13/146 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            M +L  +  I H +L + NCL+    V++++DFGL  +      T  +      K +  
Sbjct: 112 AMEYLESNGFI-HRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVK-WAP 169

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGL-RPD 152
           PE+       R + K DV+SFG++++EV    + P+   R ++ E++ SV+ G  L RP 
Sbjct: 170 PEVFDYS---RFSSKSDVWSFGVLMWEVFSEGKMPYE--RFSNSEVVESVSAGYRLYRPK 224

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRP 178
                    +   M +CW E PE RP
Sbjct: 225 L----APTEVYTIMYSCWHEKPEDRP 246

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 68.4 bits (167), Expect = 5e-13
 Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 21/150 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKL 91
           GM +L   + I H +L + NCL+D +  ++++DFGL  +    + T   G +  +R    
Sbjct: 112 GMAYLESKQFI-HRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVR---- 166

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGL 149
           +  PE+L      + + K DV++FG++++EV  +G+  P+   R  + E +  V+QG  L
Sbjct: 167 WSPPEVL---LYSKFSSKSDVWAFGVLMWEVYSLGKM-PYE--RFNNSETVEKVSQGLRL 220

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
            RP  +S      + A M +CW E  E RP
Sbjct: 221 YRPHLAS----EKVYAIMYSCWHEKAEERP 246

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 68.1 bits (166), Expect = 5e-13
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 11/166 (6%)

Query: 25  SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQER 84
            I  +   + GM ++     I H +LR++N L+    + +IADFGL       + T +E 
Sbjct: 105 LIDFSAQIAEGMAYIERKNYI-HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREG 163

Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT 144
                K + APE +        T K DV+SFG++LYE++   G   +  M++ ++++++ 
Sbjct: 164 AKFPIK-WTAPEAINFGSF---TIKSDVWSFGILLYEIV-TYGKIPYPGMSNSDVMSALQ 218

Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           +G  + R +     C   +   M+TCW+E  E RP   ++   L +
Sbjct: 219 RGYRMPRMEN----CPDELYDIMKTCWKEKAEERPTFDYLQSVLDD 260

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 67.7 bits (165), Expect = 8e-13
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG--QDETGQE 83
           I +   A+ GM +L     I H +L + NCL+  + VL+I+DFG+   +       TG  
Sbjct: 97  IQMVENAAAGMEYLESKHCI-HRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGM 155

Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSV 143
           +++  +  + APE L   +  R + + DV+SFG++L+E     G   +  +++++   ++
Sbjct: 156 KQIPVK--WTAPEAL---NYGRYSSESDVWSFGILLWEAFS-LGAVPYANLSNQQTREAI 209

Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
            QG  L        C  ++   M  CWE DP  RP    VH +L
Sbjct: 210 EQGVRLPCPE---LCPDAVYRLMERCWEYDPGQRPSFSTVHQEL 250

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 67.9 bits (166), Expect = 8e-13
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 20/161 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKLY 92
           GM++L  S+   H +L + NCL+    V++I DFG+       D    G    L  R  +
Sbjct: 134 GMVYL-ASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIR--W 190

Query: 93  KAPE--LLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSG 148
             PE  + R     + T + DV+SFG+VL+E+   G+Q PW  L  ++EE+I  +TQG  
Sbjct: 191 MPPESIMYR-----KFTTESDVWSFGVVLWEIFTYGKQ-PWYGL--SNEEVIECITQGRL 242

Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           L+       C   +   M  CW+ DP+ R +++ +H +L++
Sbjct: 243 LQRPR---TCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK 280

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 67.4 bits (164), Expect = 1e-12
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH--AFKAGQDETGQERKLRRRK 90
           + GM++L     + H +L + NCL+    +++I DFG+    +       G    L  R 
Sbjct: 130 AAGMVYLASQHFV-HRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIR- 187

Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSG 148
            +  PE +        T + DV+S G+VL+E+   G+Q PW   ++++ E+I  +TQG  
Sbjct: 188 -WMPPESIMYRKF---TTESDVWSLGVVLWEIFTYGKQ-PW--YQLSNNEVIECITQGRV 240

Query: 149 L-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           L RP T    C   +   M  CW+ +P +R +++ +H  L+ +
Sbjct: 241 LQRPRT----CPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNL 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 15/158 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  +     I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 114 GMAFIERKNYI-HRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIK-WTA 171

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL-RP 151
           PE +        T K DV+SFG++L E++  GR    G   MT+ E+I ++ +G  + RP
Sbjct: 172 PEAINYGTF---TIKSDVWSFGILLTEIVTYGRIPYPG---MTNPEVIQNLERGYRMPRP 225

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           D    +C   +   MR CW+E PE RP   ++   L++
Sbjct: 226 D----NCPEELYELMRLCWKEKPEERPTFEYLRSVLED 259

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 24/152 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM +L   + + H +L + NC++     ++I DFG+      +D  ET   RK  +  L 
Sbjct: 131 GMAYLAAKKFV-HRDLAARNCMVAEDLTVKIGDFGM-----TRDIYETDYYRKGGKGLLP 184

Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGS 147
             + APE L+       T K DV+SFG+VL+E+  +  Q P+  L  ++EE++  V  G 
Sbjct: 185 VRWMAPESLKDGVF---TTKSDVWSFGVVLWEMATLAEQ-PYQGL--SNEEVLKFVIDGG 238

Query: 148 GLRPDTSSLDCAPSIIA-CMRTCWEEDPELRP 178
            L       +  P  +   MR CW+ +P++RP
Sbjct: 239 HLDLP----ENCPDKLLELMRMCWQYNPKMRP 266

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 13/159 (8%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL 91
           ++GM +L     + H +L + N L+ +R   +I+DFG+  A  AG D        R    
Sbjct: 105 AMGMAYLESKHFV-HRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLK 163

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSGL- 149
           + APE +   +  + + K DV+S+G+ L+E       P+G   M   E+I  +  G  L 
Sbjct: 164 WYAPECI---NYGKFSSKSDVWSYGVTLWEAFSYGAKPYG--EMKGAEVIAMLESGERLP 218

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           RP+    +C   I + M +CW+  PE RP    +    +
Sbjct: 219 RPE----ECPQEIYSIMLSCWKYRPEDRPTFSELESTFR 253

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 14/160 (8%)

Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
           A+ GM +L     I H +L + NCL+    VL+I+DFG+   + G   T  +  L++  +
Sbjct: 102 AAAGMEYLESKNCI-HRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSD-GLKQIPI 159

Query: 92  -YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGL 149
            + APE L      R T + DV+S+G++L+E       P+    M++++    +  G  +
Sbjct: 160 KWTAPEALN---YGRYTSESDVWSYGILLWETFSLGDTPYPG--MSNQQTRERIESGYRM 214

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
             P      C   I   M  CW  DPE RP    ++++L+
Sbjct: 215 PAPQL----CPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L +   + H +L + N L++S  V +++DFGL       + T   +  +    + A
Sbjct: 118 GMKYLSEMNYV-HRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTA 176

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
           PE +        T   DV+SFG+V++EV+  G +  W    M+++++I +V  G  L P 
Sbjct: 177 PEAIAYRKF---TSASDVWSFGIVMWEVMSYGERPYWD---MSNQDVIKAVEDGYRLPP- 229

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +DC  ++   M  CW++D   RP    +   L +M
Sbjct: 230 --PMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 11/145 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L  +  I H +L + NCL+ S  V++++DFG+  +    DE       +    +  
Sbjct: 112 GMEYLERNSFI-HRDLAARNCLVSSTGVVKVSDFGMTRYVL-DDEYTSSSGAKFPVKWSP 169

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE+    +  + + K DV+SFG++++EV   +G     + ++ E++  +++G  L RP  
Sbjct: 170 PEVF---NFSKYSSKSDVWSFGVLMWEVF-TEGKMPFEKKSNYEVVEMISRGFRLYRPKL 225

Query: 154 SSLDCAPSIIACMRTCWEEDPELRP 178
           +S+    ++   M +CW E PE RP
Sbjct: 226 ASM----TVYEVMYSCWHEKPEGRP 246

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 65.1 bits (159), Expect = 9e-12
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 23/159 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L     I H +L + N L++S  +++I+DFGL        +    ++     + + 
Sbjct: 121 GMDYLGSQRYI-HRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWY 179

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEV-------------IGRQGPWGHLRMTDEEII 140
           APE LR     + +   DV+SFG+ LYE+               R       +M    ++
Sbjct: 180 APECLRT---SKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLL 236

Query: 141 TSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
             + +G  L RP +    C   +   M+ CWE +P+ RP
Sbjct: 237 ELLKEGERLPRPPS----CPDEVYDLMKLCWEAEPQDRP 271

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 17/167 (10%)

Query: 28  VNTTASV--GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           ++  A V  GM +L     I H +L + N L+    + ++ADFGL    K    E  +  
Sbjct: 106 IDMAAQVASGMAYLEAQNYI-HRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGA 164

Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITS 142
           K   +  + APE        R + K DV+SFG++L E++  GR    G   MT+ E++  
Sbjct: 165 KFPIK--WTAPEAA---LYNRFSIKSDVWSFGILLTEIVTYGRMPYPG---MTNAEVLQQ 216

Query: 143 VTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           V QG  +        C   +   M  CW+EDP+ RP    +  KL++
Sbjct: 217 VDQGYRMPCPPG---CPKELYDIMLDCWKEDPDDRPTFETLQWKLED 260

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 17/157 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF---KAGQDETGQERKLRRRKL 91
           GM +L  S +I H +L + NCL+    V++++DFG+  F         TG +  ++    
Sbjct: 112 GMAYLESSNVI-HRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVK---- 166

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-R 150
           + +PE+       + + K DV+SFG++++EV   +G   +   ++ E++ ++  G  L +
Sbjct: 167 WSSPEVFS---FSKYSSKSDVWSFGVLMWEVFS-EGKTPYENRSNSEVVETINAGFRLYK 222

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
           P       + S+   M+ CW+E PE RP    + H+L
Sbjct: 223 PRL----ASQSVYELMQHCWKERPEDRPSFSLLLHQL 255

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 30  TTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRR 89
           T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T         
Sbjct: 111 TQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 169

Query: 90  KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG--PWGHLRMTDEEIITSVTQGS 147
           K + APE L        + K DV++FG++L+E I   G  P+  + ++   +   + +G 
Sbjct: 170 K-WTAPESLAYNKF---SIKSDVWAFGVLLWE-IATYGMSPYPGIDLSQ--VYELLEKGY 222

Query: 148 GL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            + RP+     C P +   MR CW+ +P  RP    +H   + M
Sbjct: 223 RMERPE----GCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM 262

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 38/174 (21%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM +L     + H +L + NCL+   + ++IADFG+             R L     Y+ 
Sbjct: 142 GMRYLESLNFV-HRDLATRNCLVGKNYTIKIADFGM------------SRNLYSSDYYRV 188

Query: 94  ---APELLR-----QPHLPRGTQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEII--- 140
              AP  +R        L + T K DV++FG+ L+E+  + R+ P+ HL  TD+++I   
Sbjct: 189 QGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHL--TDQQVIENA 246

Query: 141 TSVTQGSGL-----RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
               +  G      RP      C   I   M  CW  D E RP  R +H  L+ 
Sbjct: 247 GHFFRDDGRQIYLPRPPN----CPKDIYELMLECWRRDEEDRPTFREIHLFLQR 296

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 63.1 bits (153), Expect = 3e-11
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 19/159 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            M +L  +  + H +L + N L+    V +++DFGL    +   +TG   KL  +  + A
Sbjct: 114 AMEYLEANNFV-HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG---KLPVK--WTA 167

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGL-RP 151
           PE LR+    + + K DV+SFG++L+E+   GR  P+   R+  ++++  V +G  +  P
Sbjct: 168 PEALREK---KFSTKSDVWSFGILLWEIYSFGRV-PYP--RIPLKDVVPRVEKGYKMDAP 221

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           D     C P +   M+ CW  D   RP    +  +L+ +
Sbjct: 222 D----GCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI 256

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 21/153 (13%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
            + +LH   I+ H +L+  N L+D    +++ADFGL    A Q + G+    +       
Sbjct: 109 ALEYLHSKGIV-HRDLKPENILLDEDGHVKLADFGL----ARQLDPGE----KLTTFVGT 159

Query: 92  --YKAPE-LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG 148
             Y APE LL + +     +  D++S G++LYE++  + P+        E+   + +   
Sbjct: 160 PEYMAPEVLLGKGY----GKAVDIWSLGVILYELLTGKPPFPG-DDQLLELFKKIGKPK- 213

Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
                   D +P     +R    +DPE R    
Sbjct: 214 PPFPPPEWDISPEAKDLIRKLLVKDPEKRLTAE 246

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +LH + I+ H +++ +N L+DS  V+++ADFG        +       +R    + A
Sbjct: 113 GLAYLHSNGIV-HRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMA 171

Query: 95  PELLRQ-PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI--ITSVTQGSGLRP 151
           PE++R   +     +  D++S G  + E+   + PW  L      +  I S  +   + P
Sbjct: 172 PEVIRGEEY----GRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEI-P 226

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
           +      +      +R C   DP+ RP
Sbjct: 227 E----HLSEEAKDFLRKCLRRDPKKRP 249

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 62.7 bits (152), Expect = 5e-11
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           + GM ++     I H +LRS+N L+    V +IADFGL       + T ++      K +
Sbjct: 112 AAGMAYIERMNYI-HRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIK-W 169

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
            APE        R T K DV+SFG++L E++ + G   +  M + E++  V +G  +   
Sbjct: 170 TAPE---AALYGRFTIKSDVWSFGILLTELVTK-GRVPYPGMNNREVLEQVERGYRM--- 222

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
               DC  S+   M  CW++DPE RP   ++   L++
Sbjct: 223 PCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED 259

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 62.6 bits (152), Expect = 5e-11
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 21/164 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLI-----DSRWVLQIADFGL--HAFKAGQDETGQERKLR 87
           G ++L     I H +L + NCL+     D+  V++I DFGL    +K+       E  L 
Sbjct: 118 GCVYLEQMHFI-HRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLP 176

Query: 88  RRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQ 145
            R  + APE L        T + DV+SFG++++E++  G+Q P+  L   ++E++  VT 
Sbjct: 177 VR--WMAPESLLDGKF---TTQSDVWSFGVLMWEILTLGQQ-PYPAL--NNQEVLQHVTA 228

Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  L+      +C   I   M  CW +DP  RP    +   L+ 
Sbjct: 229 GGRLQKPE---NCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN 269

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 33/176 (18%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK---- 90
           GM +LH    I H +L + N L+D+  +++I DFGL    A     G E    R      
Sbjct: 119 GMAYLHSQHYI-HRDLAARNVLLDNDRLVKIGDFGL----AKAVPEGHEYYRVREDGDSP 173

Query: 91  -LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--- 146
             + A E L++      +   DV+SFG+ LYE++             EE+I    QG   
Sbjct: 174 VFWYAVECLKENKFSYAS---DVWSFGVTLYELLTHCDSKQSPPKKFEEMI-GPKQGQMT 229

Query: 147 ---------SGLR---PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
                     G+R   P     +C   +   M+ CWE + + RP  R +   LKEM
Sbjct: 230 VVRLIELLERGMRLPCPK----NCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM 281

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 62.4 bits (151), Expect = 6e-11
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 20/161 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L+ ++ + H +L + NC++   + ++I DFG+        ET   RK  +  L   
Sbjct: 131 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGM---TRDIYETDYYRKGGKGLLPVR 186

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGL 149
           + +PE L+       T   DV+SFG+VL+E+  +  Q   G   M++E+++  V +G  L
Sbjct: 187 WMSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQG---MSNEQVLRFVMEGGLL 240

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
            +PD    +C   +   MR CW+ +P++RP    +   +KE
Sbjct: 241 DKPD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE 277

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 62.0 bits (150), Expect = 6e-11
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 9/155 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  +     I H +LR++N L+ +  V +IADFGL       + T +E      K + A
Sbjct: 114 GMAFIEQRNYI-HRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIK-WTA 171

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE +        T K DV+SFG++L E++   G   +  M++ E+I ++ +G  + P   
Sbjct: 172 PEAINFGSF---TIKSDVWSFGILLMEIVT-YGRIPYPGMSNPEVIRALERGYRM-PRPE 226

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           +  C   +   M  CW+  PE RP   ++   L +
Sbjct: 227 N--CPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 16/160 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +L     I H +L + N L+ S   ++I DFGL  A    +D    E  L+    + 
Sbjct: 109 GMRYLESKRFI-HRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWC 167

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSV-TQGSGL- 149
           APE LR       +   DV+ FG+ L+E+   G + PW  L     +I+  +  +G  L 
Sbjct: 168 APESLR--TR-TFSHASDVWMFGVTLWEMFTYGEE-PWAGLS--GSQILKKIDKEGERLE 221

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           RP+     C   I   M  CW  +P  RP    +   L E
Sbjct: 222 RPE----ACPQDIYNVMLQCWAHNPADRPTFAALREFLPE 257

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 61.9 bits (150), Expect = 8e-11
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S+GM +L     + H +L + N L+ ++   +I+DFGL       D   + R   +  L 
Sbjct: 105 SMGMKYLEGKNFV-HRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLK 163

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSGLR 150
           + APE +   +  + + + DV+S+G+ ++E     Q P+   +M   E+++ + QG  L 
Sbjct: 164 WYAPECI---NFRKFSSRSDVWSYGITMWEAFSYGQKPYK--KMKGPEVMSFIEQGKRLD 218

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
                  C P + A M+ CW    E RP+   V  +++
Sbjct: 219 CPAE---CPPEMYALMKDCWIYKWEDRPNFAKVEERMR 253

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 21/151 (13%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF-----KAGQDETGQERKLRRR 89
           GM +L D   + H +L + N L++S  V +++DFGL        +A     G +  +R  
Sbjct: 118 GMKYLSDMGYV-HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIR-- 174

Query: 90  KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGS 147
             + APE +      + T   DV+S+G+V++EV+  G +  W    M+++++I ++ +G 
Sbjct: 175 --WTAPEAIA---YRKFTSASDVWSYGIVMWEVMSYGERPYW---EMSNQDVIKAIEEGY 226

Query: 148 GLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
            L      +DC  ++   M  CW++D   RP
Sbjct: 227 RLPA---PMDCPAALHQLMLDCWQKDRNERP 254

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 18/170 (10%)

Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH--AFKAGQDETGQE 83
           + + +  + GM++L     + H +L + NCL+ +  +++I DFG+    +       G  
Sbjct: 126 LHIASQIASGMVYLASQHFV-HRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGH 184

Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIIT 141
             L  R  +  PE +        T + DV+SFG++L+E+   G+Q PW   ++++ E+I 
Sbjct: 185 TMLPIR--WMPPESIMYRKF---TTESDVWSFGVILWEIFTYGKQ-PW--FQLSNTEVIE 236

Query: 142 SVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +TQG  L RP      C   +   M  CW+ +P+ R +++ ++  L  +
Sbjct: 237 CITQGRVLERPRV----CPKEVYDIMLGCWQREPQQRLNIKEIYKILHAL 282

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 42/180 (23%)

Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM +L  S    H +L + NCL+     ++I+DFGL               
Sbjct: 127 LHIAIQIAAGMEYL-SSHHFVHRDLAARNCLVGEGLTVKISDFGL--------------- 170

Query: 86  LRRRKLYKAPELLRQPH---LP------------RGTQKGDVYSFGLVLYEVI--GRQGP 128
              R +Y A +  R      LP            + T + D++SFG+VL+E+   G Q  
Sbjct: 171 --SRDIYSA-DYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPY 227

Query: 129 WGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           +G    +++E+I  +     L       DC   + A M  CW E P  RP  + +H +L+
Sbjct: 228 YGF---SNQEVIEMIRSRQLL---PCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLR 281

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 17/161 (10%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKA-GQDETGQERKLRRR-- 89
           S+GM +L ++  + H +L + N L+ ++   +I+DFGL   KA G DE   + K   +  
Sbjct: 105 SMGMKYLEETNFV-HRDLAARNVLLVTQHYAKISDFGLS--KALGADENYYKAKTHGKWP 161

Query: 90  -KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGS 147
            K Y APE +   +  + + K DV+SFG++++E     Q P+    M   E+   +  G 
Sbjct: 162 VKWY-APECM---NYYKFSSKSDVWSFGVLMWEAFSYGQKPY--KGMKGNEVTQMIESGE 215

Query: 148 GLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +        C P +   M+ CW    + RP    V  +L+
Sbjct: 216 RM---ECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLR 253

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 20/193 (10%)

Query: 3   RSVRETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV 62
           RS R+ E +TP+P +     +  ++       G++HLH +  I H +L   NCL+ +   
Sbjct: 87  RSCRKAELMTPDPTT-----LQRMACEIAL--GLLHLHKNNFI-HSDLALRNCLLTADLT 138

Query: 63  LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH----LPRGTQKGDVYSFGLV 118
           ++I D+GL   K  +D      +L     + APEL+ + H    +   T++ +V+S G+ 
Sbjct: 139 VKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVT 198

Query: 119 LYEV--IGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPS--IIACMRTCWEEDP 174
           ++E+  +G Q P+ HL  +DE+++T   +   L+     L    S      M+ CW + P
Sbjct: 199 IWELFELGSQ-PYRHL--SDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCWLQ-P 254

Query: 175 ELRPDLRFVHHKL 187
           E RP    VH  L
Sbjct: 255 EQRPSAEEVHLLL 267

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 59.7 bits (144), Expect = 4e-10
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG 106
           H +LR++N L+    V +IADFGL       + T ++      K + APE        R 
Sbjct: 125 HRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIK-WTAPE---AALYGRF 180

Query: 107 TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACM 166
           T K DV+SFG++L E++ + G   +  M + E++  V +G  +        C  S+   M
Sbjct: 181 TIKSDVWSFGILLTELVTK-GRVPYPGMVNREVLEQVERGYRM---PCPQGCPESLHELM 236

Query: 167 RTCWEEDPELRPDLRFVHHKLKE 189
           + CW++DP+ RP   ++   L++
Sbjct: 237 KLCWKKDPDERPTFEYIQSFLED 259

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 24/163 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM +L+  + + H +L + NC++   + ++I DFG+      +D  ET   RK  +  L 
Sbjct: 131 GMAYLNAKKFV-HRDLAARNCMVAHDFTVKIGDFGM-----TRDIYETDYYRKGGKGLLP 184

Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGS 147
             + APE L+       T   D++SFG+VL+E+  +  Q   G   +++E+++  V  G 
Sbjct: 185 VRWMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQG---LSNEQVLKFVMDGG 238

Query: 148 GL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
            L +PD    +C   +   MR CW+ +P++RP    + + LK+
Sbjct: 239 YLDQPD----NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD 277

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 20/182 (10%)

Query: 1   MRRSVRETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR 60
           +R +  + E + P PLS        +++ T  ++GM HL ++  + H +L + NCL+ S+
Sbjct: 99  LRATKSKDEKLKPPPLSTKQK----VALCTQIALGMDHLSNARFV-HRDLAARNCLVSSQ 153

Query: 61  WVLQIADFGLHAFKAGQDETGQERKLRRRKL----YKAPELLRQPHLPRGTQKGDVYSFG 116
             ++++   L      +D    E    R  L    + APE +++      + K DV+SFG
Sbjct: 154 REVKVSLLSL-----SKDVYNSEYYKLRNALIPLRWLAPEAVQEDDF---STKSDVWSFG 205

Query: 117 LVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPEL 176
           ++++EV   QG      ++DEE++  +  G    P      C   +   M  CW  +P+ 
Sbjct: 206 VLMWEVF-TQGELPFYGLSDEEVLNRLQAGKLELPVPEG--CPSRLYKLMTRCWAVNPKD 262

Query: 177 RP 178
           RP
Sbjct: 263 RP 264

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 22/155 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDETGQERKLRR 88
           GM +L   + + H +L + NC++D  + +++ADFGL        + +  + TG +  ++ 
Sbjct: 110 GMEYLASKKFV-HRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVK- 167

Query: 89  RKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGS 147
              + A E L+     + T K DV+SFG++L+E++ R   P+  +   D  I   + QG 
Sbjct: 168 ---WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFD--ITVYLLQGR 219

Query: 148 GLR-PDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            L  P+     C   +   M +CW   PE+RP   
Sbjct: 220 RLLQPEY----CPDPLYEVMLSCWHPKPEMRPTFS 250

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 15/159 (9%)

Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
           A+ GM +L     I H +L + NCL+    VL+I+DFG+    + Q++ G       +++
Sbjct: 102 AAAGMAYLESKNCI-HRDLAARNCLVGENNVLKISDFGM----SRQEDDGIYSSSGLKQI 156

Query: 92  ---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG 148
              + APE L   +  R + + DV+S+G++L+E     G   +  MT+++    V +G  
Sbjct: 157 PIKWTAPEAL---NYGRYSSESDVWSYGILLWETFS-LGVCPYPGMTNQQAREQVEKGYR 212

Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
           +   +    C   +   M+ CW+  PE RP    +  +L
Sbjct: 213 M---SCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKEL 248

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 23/158 (14%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF-----KAGQDETGQERKLR 87
           + GM +L D   + H +L + N L++S    +++DFGL        +     +G +  +R
Sbjct: 117 AAGMKYLSDMNYV-HRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIR 175

Query: 88  RRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQ 145
               + APE +        T   DV+SFG+V++EV+  G +  W    M++ E++ ++  
Sbjct: 176 ----WTAPEAIAYRKF---TSASDVWSFGIVMWEVMSFGERPYW---DMSNHEVMKAIND 225

Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV 183
           G  L    + +DC  ++   M  CW++D   RP  RFV
Sbjct: 226 GFRL---PAPMDCPSAVYQLMLQCWQQDRARRP--RFV 258

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 14/180 (7%)

Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
            + GM +L + + I H +L + N L+      +IADFGL     G++   ++   R    
Sbjct: 128 VATGMQYLSEKQFI-HRDLAARNVLVGENLASKIADFGL---SRGEEVYVKKTMGRLPVR 183

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + A E L        T K DV+SFG++L+E++   G   +  MT  E+   + QG  +  
Sbjct: 184 WMAIESLNYSVY---TTKSDVWSFGVLLWEIVSLGGT-PYCGMTCAELYEKLPQGYRME- 238

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAF 211
                +C   +   MR CW + P  RP    +  +L  M    KA +  NM A+ E + +
Sbjct: 239 --KPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARKAYV--NM-ALFENFTY 293

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 23/153 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF--KAGQDET-----GQERKLR 87
           GM +L +   + H +L + N L++S  V +++DFGL  F      D T     G +  +R
Sbjct: 118 GMKYLSEMNYV-HRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIR 176

Query: 88  RRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQ 145
               + APE +      + T   DV+S+G+V++EV+  G +  W    M+++++I ++ Q
Sbjct: 177 ----WTAPEAIA---YRKFTSASDVWSYGIVMWEVMSYGERPYWD---MSNQDVINAIEQ 226

Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
              L P    +DC  ++   M  CW++D   RP
Sbjct: 227 DYRLPP---PMDCPTALHQLMLDCWQKDRNARP 256

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 10/161 (6%)

Query: 30  TTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRR 89
           T  + GM +L     I H +L + NC+++    + +ADFGL       D   Q R  +  
Sbjct: 119 TDIASGMEYLSSKSFI-HRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMP 177

Query: 90  KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSG 148
             + A E L        T K DV+SFG+ ++E+  R Q P+  +   + EI   + QG+ 
Sbjct: 178 VKWIAIESLADRVY---TTKSDVWSFGVTMWEIATRGQTPYPGVE--NSEIYDYLRQGNR 232

Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           L+     LD    + + M +CW  +P+ RP    +  +L++
Sbjct: 233 LKQPPDCLDG---LYSLMSSCWLLNPKDRPSFETLRCELEK 270

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 20/182 (10%)

Query: 20  NIPIGSIS----VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFK 74
           NIP  SI+    +    + GM +L     + H +L + NCL+ + + ++IADFG+     
Sbjct: 122 NIPSVSIANLLYMAVQIASGMKYLASLNFV-HRDLATRNCLVGNHYTIKIADFGMSRNLY 180

Query: 75  AGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV--IGRQGPWGHL 132
           +G     Q R +   +      +L    L + T   DV++FG+ L+E+  + ++ P+  L
Sbjct: 181 SGDYYRIQGRAVLPIRWMAWESIL----LGKFTTASDVWAFGVTLWEMFTLCKEQPYSLL 236

Query: 133 RMTDEEIITSV-----TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
             +DE++I +       QG  +    + L C   +   M  CW  D + RP    +HH L
Sbjct: 237 --SDEQVIENTGEFFRNQGRQIYLSQTPL-CPSPVFKLMMRCWSRDIKDRPTFNKIHHFL 293

Query: 188 KE 189
           +E
Sbjct: 294 RE 295

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 12/160 (7%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           S GM +L + +++ H +L + N L+     ++I+DFGL      +D   +  K R    +
Sbjct: 137 SRGMQYLAEMKLV-HRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKW 195

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGL-R 150
            A E L   H+   T + DV+SFG++L+E++   G P+  +    E +   +  G  + R
Sbjct: 196 MAIESLFD-HIY--TTQSDVWSFGVLLWEIVTLGGNPYPGI--APERLFNLLKTGYRMER 250

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           P+    +C+  +   M TCW+++P+ RP    +  +L++M
Sbjct: 251 PE----NCSEEMYNLMLTCWKQEPDKRPTFADISKELEKM 286

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L   + I H +L + N L+   +V +IADFGL     GQ+   ++   R    + A
Sbjct: 136 GMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGL---SRGQEVYVKKTMGRLPVRWMA 191

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
            E L   +    T   DV+S+G++L+E++   G   +  MT  E+   + QG  L     
Sbjct: 192 IESL---NYSVYTTNSDVWSYGVLLWEIVSLGGT-PYCGMTCAELYEKLPQGYRLE---K 244

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            L+C   +   MR CW E P  RP    +   L  M
Sbjct: 245 PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 280

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 25/163 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +L   + + H +L + N L++S   ++I DFGL  A +  ++    +  L     + 
Sbjct: 121 GMDYLGSRQYV-HRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWY 179

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI--------------GRQGPWGHLRMTDEEI 139
           APE L Q      +   DV+SFG+ LYE++                 GP  H +MT   +
Sbjct: 180 APECLIQSKFYIAS---DVWSFGVTLYELLTYCDSESSPMTLFLKMIGP-THGQMTVTRL 235

Query: 140 ITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +  + +G  L RP     +C   +   MR CWE  P  R   +
Sbjct: 236 VRVLEEGKRLPRPP----NCPEEVYQLMRKCWEFQPSKRTTFQ 274

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 14/150 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +LH   I+ H +L++ N L+D+  + +I+DFG+        +  Q   ++    + A
Sbjct: 120 GLAYLHSKGIL-HRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMA 178

Query: 95  PELLRQPHLPRG-TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI-----ITSVTQGSG 148
           PE++      +G + K D++S G V+ E+   + PW      +E I     + +      
Sbjct: 179 PEVIHSYS--QGYSAKVDIWSLGCVVLEMFAGRRPWS----DEEAIAAMFKLGNKRSAPP 232

Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           + PD S    +P  +  +  C+  +P+ RP
Sbjct: 233 IPPDVSMN-LSPVALDFLNACFTINPDNRP 261

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 39/169 (23%)

Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           IS +   + GM  L   + I H +L + N L+    V++I DFGL               
Sbjct: 176 ISYSFQVARGMEFLASRKCI-HRDLAARNILLSENNVVKICDFGL--------------- 219

Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGRQG-PWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 220 --ARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYP 277

Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R P+ ++    P I + M  CW  +PE RP
Sbjct: 278 GVQI-DEEFCRRLKEGTRMRAPEYAT----PEIYSIMLDCWHNNPEDRP 321

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 18/167 (10%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH--AFKAGQDETG--QERKLRR 88
           + GM +LH   +I H ++ + NC+ID    ++I D  L    F       G  + R ++ 
Sbjct: 127 ACGMSYLHKRGVI-HKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVK- 184

Query: 89  RKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGS 147
              + A E L        +   DV+SFG++L+E++   Q P  ++ +   E+   +  G 
Sbjct: 185 ---WMALESLVNKEY---SSASDVWSFGVLLWELMTLGQTP--YVEIDPFEMAAYLKDGY 236

Query: 148 GLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGL 194
            L      ++C   + A M  CW  DPE RP    +   L + +A L
Sbjct: 237 RL---AQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHAQL 280

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG 106
           H +LR++N L+    V ++ADFGL       + T ++      K + APE        R 
Sbjct: 125 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIK-WTAPE---AALYGRF 180

Query: 107 TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACM 166
           T K DV+SFG++L E +  +G   +  M + E++  V +G  + P     +C  S+   M
Sbjct: 181 TIKSDVWSFGILLTE-LTTKGRVPYPGMVNREVLDQVERGYRM-PCPP--ECPESLHDLM 236

Query: 167 RTCWEEDPELRPDLRFVHHKLKE 189
             CW ++PE RP   ++   L++
Sbjct: 237 CQCWRKEPEERPTFEYLQAFLED 259

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 21/174 (12%)

Query: 19  FNIPIGSISVNTTASV------GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA 72
            + P G +     A+V      G+ +LH +  I H ++++ N L+     ++IADFG+ A
Sbjct: 92  SSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQI-HRDIKAGNILLGEDGSVKIADFGVSA 150

Query: 73  FKAGQDETGQERKLRRRK------LYKAPELLRQPHLPRG-TQKGDVYSFGLVLYEVIGR 125
             A     G +R  + RK       + APE++ Q H   G   K D++SFG+   E+   
Sbjct: 151 SLA----DGGDRTRKVRKTFVGTPCWMAPEVMEQVH---GYDFKADIWSFGITAIELATG 203

Query: 126 QGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD 179
             P+         ++T       L         + S    +  C ++DP  RP 
Sbjct: 204 AAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPT 257

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 15/175 (8%)

Query: 18  PFNIPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA--FK 74
           PF +P+ + +      + GM +L     I H +L + NC+++    + +ADFGL    + 
Sbjct: 107 PFTLPLQTLVRFMIDIASGMEYLSSKNFI-HRDLAARNCMLNENMTVCVADFGLSKKIYS 165

Query: 75  AGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLR 133
                 G   KL  + L  A E L        T   DV++FG+ ++E++ R Q P+  + 
Sbjct: 166 GDYYRQGCASKLPVKWL--ALESLADNVY---TTHSDVWAFGVTMWEIMTRGQTPYAGVE 220

Query: 134 MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
             + EI   + +G+ L+      DC   +   M  CW  +P+ RP  + +  +L+
Sbjct: 221 --NSEIYNYLIKGNRLK---QPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLE 270

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL 97
           H+H   ++ H +++ +N  I +  V+++ D GL  F + +  T     L     Y +PE 
Sbjct: 121 HMHSRRVM-HRDIKPANVFITATGVVKLGDLGLGRFFSSK--TTAAHSLVGTPYYMSPER 177

Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLD 157
           +   H      K D++S G +LYE+   Q P+   +M    +   + Q     P   S  
Sbjct: 178 I---HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD--YPPLPSDH 232

Query: 158 CAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNA 192
            +  +   +  C   DPE RPD+ +V+   K M+A
Sbjct: 233 YSEELRQLVNMCINPDPEKRPDITYVYDVAKRMHA 267

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     + H +L + N L++S   ++I DFGL        E  + R+     ++  
Sbjct: 120 GMEYLGSKRYV-HRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWY 178

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEV-----IGRQGPWGHLRMTDEE---------I 139
           APE L +      +   DV+SFG+VLYE+          P   +RM   +         +
Sbjct: 179 APESLTESKFSVAS---DVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHL 235

Query: 140 ITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
           I  +     L  P      C   I A M+ CW  DP  RP    +  ++
Sbjct: 236 IELLKNNGRLPAPP----GCPAEIYAIMKECWNNDPSQRPSFSELALQV 280

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           + GM +L  S    H +L + N LI  +  ++I+D GL       D    + K      +
Sbjct: 134 AAGMEYL-SSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRW 192

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGLR 150
             PE +      + +   D++SFG+VL+E+   G Q  +G    +++E+I  V +   L 
Sbjct: 193 MPPEAIM---YGKFSSDSDIWSFGVVLWEIFSFGLQPYYG---FSNQEVIEMVRKRQLL- 245

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
               S DC P + + M  CW+E P  RP  + +H +L+
Sbjct: 246 --PCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLR 281

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 53.0 bits (127), Expect = 7e-08
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKL-------- 86
           GM +L +   + H  L +   L++S  V +I+ F             QE K         
Sbjct: 119 GMKYLSEMGYV-HKGLAAHKVLVNSDLVCKISGFR----------RLQEDKSEAIYTTMS 167

Query: 87  -RRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSV 143
            +   L+ APE ++  H    +   DV+SFG+V++EV+  G +  W    M+ +++I +V
Sbjct: 168 GKSPVLWAAPEAIQYHHF---SSASDVWSFGIVMWEVMSYGERPYWD---MSGQDVIKAV 221

Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             G  L       +C   +   M  CW+++   RP    +H  L +M
Sbjct: 222 EDGFRLPA---PRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 32/180 (17%)

Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I + T  + GM +L     + H +L + NCL+   + ++IADFG+             R 
Sbjct: 133 IFMATQIASGMKYLSSLNFV-HRDLATRNCLVGKNYTIKIADFGM------------SRN 179

Query: 86  LRRRKLYKAPELLRQP---------HLPRGTQKGDVYSFGLVLYEVIG--RQGPWGHLRM 134
           L     Y+       P          L + T   DV++FG+ L+E++   ++ P+  L  
Sbjct: 180 LYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQL-- 237

Query: 135 TDEEIITSV-----TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           +DE++I +       QG  +     +L C  S+   M +CW  + + RP  + +H  L E
Sbjct: 238 SDEQVIENTGEFFRDQGRQVYLPKPAL-CPDSLYKLMLSCWRRNAKERPSFQEIHATLLE 296

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 30  TTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRR 89
              + GM +L   + I H +L + N L+   +V +IADFGL     GQ+   ++   R  
Sbjct: 119 ADVARGMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGL---SRGQEVYVKKTMGRLP 174

Query: 90  KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + A E L   +    T   DV+S+G++L+E++   G   +  MT  E+   + QG  L
Sbjct: 175 VRWMAIESL---NYSVYTTNSDVWSYGVLLWEIVSLGGT-PYCGMTCAELYEKLPQGYRL 230

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
                 L+C   +   MR CW E P  RP    +   L  M
Sbjct: 231 E---KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 268

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 18/163 (11%)

Query: 25  SISVNTTASV--GMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFG----LHAFKAGQ 77
           ++ +N T  +  G+ +LH+++II H +++ +N LIDS    L+IADFG    L A   G 
Sbjct: 103 AVIINYTEQLLRGLSYLHENQII-HRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGA 161

Query: 78  DE-TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD 136
            E  GQ   L     + APE+LR     R     DV+S G V+ E+   + PW   + ++
Sbjct: 162 GEFQGQ---LLGTIAFMAPEVLRGEQYGRSC---DVWSVGCVIIEMATAKPPWNAEKHSN 215

Query: 137 E-EIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
              +I  +   +        L  +P +      C E  PE RP
Sbjct: 216 HLALIFKIASATTAPSIPEHL--SPGLRDVTLRCLELQPEDRP 256

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 22/163 (13%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDE---TGQERKLRRRK 90
           GM +L +  ++ H +L + N L+ +   ++I DFGL       + E    G +  ++   
Sbjct: 121 GMSYLEEKRLV-HRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIK--- 176

Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSG 148
            + A E +        T K DV+S+G+ ++E++  G + P+  +     EI   + +G  
Sbjct: 177 -WMALESI---LHRIYTHKSDVWSYGVTVWELMTFGAK-PYEGIPAV--EIPDLLEKGER 229

Query: 149 L-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           L +P   ++D    +   +  CW  D E RP  + + ++  +M
Sbjct: 230 LPQPPICTID----VYMVLVKCWMIDAESRPTFKELINEFSKM 268

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 39/160 (24%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  L   + I H +L + N L+    V++I DFGL                  R +YK 
Sbjct: 191 GMEFLASRKCI-HRDLAARNILLSENNVVKICDFGL-----------------ARDIYKD 232

Query: 95  PELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEI 139
           P+ +R+    LP              T + DV+SFG++L+E+      P+  +++ DEE 
Sbjct: 233 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEF 291

Query: 140 ITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
              + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 292 CRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 327

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%)

Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           + V    + GM +L     + H +L + NCL+     ++IADFG+     AG     Q R
Sbjct: 141 LHVALQIASGMKYLSSLNFV-HRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGR 199

Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG--RQGPWGHLRMTDEEIITS 142
            +   +      +L    + + T   DV++FG+ L+E++   ++ P+G L  TDE++I +
Sbjct: 200 AVLPIRWMAWECIL----MGKFTTASDVWAFGVTLWEILMLCKEQPYGEL--TDEQVIEN 253

Query: 143 V-----TQGSGL---RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
                  QG  +   RP      C   +   M  CW  D   RP    +H  L E
Sbjct: 254 AGEFFRDQGRQVYLFRPPP----CPQGLYELMLQCWSRDCRERPSFSDIHAFLTE 304

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM  L   + I H +L + N L+    V++IADFGL       D     RK    +L   
Sbjct: 144 GMEFLASKKCI-HRDLAARNVLVTEDHVMKIADFGLARDIHHID---YYRKTTNGRLPVK 199

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGLR 150
           + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + +G  + 
Sbjct: 200 WMAPEALFDRVY---THQSDVWSFGVLLWEIFTLGGSPYPGIPV--EELFKLLKEGYRME 254

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
                 +C   +   MR CW E P  RP  +
Sbjct: 255 K---PQNCTQELYHLMRDCWHEVPSQRPTFK 282

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 43/189 (22%)

Query: 6   RETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQI 65
           +ET+ +  +PL+  ++   S  V    + GM  L   + I H +L + N L+    V++I
Sbjct: 161 QETDDLWKSPLTMEDLICYSFQV----ARGMEFLASRKCI-HRDLAARNILLSENNVVKI 215

Query: 66  ADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ--PHLPRG------------TQKGD 111
            DFGL                  R +YK P+ +R+    LP              T + D
Sbjct: 216 CDFGL-----------------ARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSD 258

Query: 112 VYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTC 169
           V+SFG++L+E+      P+  +++ +EE    +  G+ +R P+ ++    P I   M  C
Sbjct: 259 VWSFGVLLWEIFSLGASPYPGVQI-NEEFCQRLKDGTRMRAPENAT----PEIYRIMLAC 313

Query: 170 WEEDPELRP 178
           W+ DP+ RP
Sbjct: 314 WQGDPKERP 322

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 20/165 (12%)

Query: 22  PIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF---KAGQD 78
            +G I+V      G+ +LH+   I H +++ SN L++SR  +++ DFG+         + 
Sbjct: 101 ILGKIAVAVLK--GLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKT 158

Query: 79  ETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR--QGPWGHLRMT 135
             G          Y APE ++       + K D++S GL L E+  GR    P       
Sbjct: 159 FVGT-------SSYMAPERIQGNDY---SVKSDIWSLGLSLIELATGRFPYPPENDPPDG 208

Query: 136 DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
             E++  +       P   S   +P     +  C  +DP  RP  
Sbjct: 209 IFELLQYIVNEPP--PRLPSGKFSPDFQDFVNLCLIKDPRERPSY 251

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 24/195 (12%)

Query: 3   RSVRETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV 62
           RS R   A          +     S       G++ LH ++ I H +L   NC + +   
Sbjct: 87  RSNRGMVAQMAQKDVLQRMACEVAS-------GLLWLHQADFI-HSDLALRNCQLTADLS 138

Query: 63  LQIADFGLHAFKAGQD--ETGQERKLRRRKLYKAPELLRQPH---LPRG-TQKGDVYSFG 116
           ++I D+GL   +  +D   T     +  R  + APEL+       LP+  T+K +++S G
Sbjct: 139 VKIGDYGLALEQYPEDYYITKDCHAVPLR--WLAPELVEIRGQDLLPKDQTKKSNIWSLG 196

Query: 117 LVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDC--APSIIACMRTCWEE 172
           + ++E+     Q P+  L  +DE+++  V +   ++     LD   +      M+ CW  
Sbjct: 197 VTMWELFTAADQ-PYPDL--SDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-L 252

Query: 173 DPELRPDLRFVHHKL 187
           DPE RP    VH  L
Sbjct: 253 DPETRPTAEEVHELL 267

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L   + I H +L + N L+    V++IADFGL       D   +    R    + A
Sbjct: 146 GMEYLASQKCI-HRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMA 204

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE L        T + DV+SFG++L+E+    G   +  +  EE+   + +G   R D  
Sbjct: 205 PEALFDRVY---THQSDVWSFGVLLWEIF-TLGGSPYPGIPVEELFKLLKEGH--RMDKP 258

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLR 181
           + +C   +   MR CW   P  RP  +
Sbjct: 259 A-NCTHELYMIMRECWHAVPSQRPTFK 284

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 14/161 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + H+H S+ I H +++ +N  I +  V+++ D GL  F +   +T     L     Y +
Sbjct: 118 ALEHMH-SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFS--SKTTAAHSLVGTPYYMS 174

Query: 95  PELLRQPHLPRGTQ-KGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SGLRP 151
           PE + +     G   K D++S G +LYE+   Q P+   +M    +   + +     L  
Sbjct: 175 PERIHE----NGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPA 230

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNA 192
           D  S +    +  C+      DPE RPD+ +V    KEM+A
Sbjct: 231 DHYSEELRDLVSRCINP----DPEKRPDISYVLQVAKEMHA 267

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 49.6 bits (118), Expect = 9e-07
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL 97
           H+H   ++ H +++ +N  I +  V+++ D GL  F +   +T     L     Y +PE 
Sbjct: 121 HMHSRRVM-HRDIKPANVFITATGVVKLGDLGLGRFFS--SKTTAAHSLVGTPYYMSPER 177

Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLD 157
           +   H      K D++S G +LYE+   Q P+   +M    +   + Q     P   +  
Sbjct: 178 I---HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCD--YPPLPTEH 232

Query: 158 CAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMN 191
            +  +   +  C   DP+ RPD+ +VH   K+M+
Sbjct: 233 YSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH 266

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 16/172 (9%)

Query: 17  SPFNIPIGSISVNTTASV------GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL 70
           +P  +P   +S     S       GM +L   + I H +L + N L+    V++IADFGL
Sbjct: 128 NPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGL 186

Query: 71  HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PW 129
                  D   +    R    + APE L        T + DV+SFG++L+E+    G P+
Sbjct: 187 ARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPY 243

Query: 130 GHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             + +  EE+   + +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 244 PGVPV--EELFKLLKEGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 290

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 10/167 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L     I H +L + N L+    V++IADFGL       D   +    R    + A
Sbjct: 146 GMEYLESRRCI-HRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMA 204

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGLRPDT 153
           PE L        T + DV+SFG++++E+    G P+  + +  EE+   + +G   R D 
Sbjct: 205 PEALFDRVY---THQSDVWSFGILMWEIFTLGGSPYPGIPV--EELFKLLREGH--RMDK 257

Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFD 200
            S +C   +   MR CW   P  RP  + +   L ++ A +     D
Sbjct: 258 PS-NCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAVSEEYLD 303

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 20/140 (14%)

Query: 47  HGNLRSSNCLIDSRW---VLQIADFGLHAFKAGQDETGQE--RKLRRRKL---YKAPELL 98
           H ++ + NCL+  +    V +IADFG+      +D       RK  R  L   +  PE  
Sbjct: 139 HRDIAARNCLLTCKGPGRVAKIADFGM-----ARDIYRASYYRKGGRAMLPIKWMPPEAF 193

Query: 99  RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDC 158
                   T K DV+SFG++L+E+    G   +   T++E++  VT G  L P      C
Sbjct: 194 LDGIF---TSKTDVWSFGVLLWEIFSL-GYMPYPGRTNQEVMEFVTGGGRLDPPKG---C 246

Query: 159 APSIIACMRTCWEEDPELRP 178
              +   M  CW+  PE RP
Sbjct: 247 PGPVYRIMTDCWQHTPEDRP 266

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRR-RKLYK 93
           G+ +LH + II H +++++N L+ S   +++ DFGL    + Q    + R        + 
Sbjct: 110 GLEYLHSNGII-HRDIKAANILLTSDGEVKLIDFGL----SAQLSDTKARNTMVGTPYWM 164

Query: 94  APELLRQ-PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
           APE++   P+      K D++S G+   E+   + P+  L         +     GLR  
Sbjct: 165 APEVINGKPY----DYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNP 220

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRP 178
               D     +   + C +++PE RP
Sbjct: 221 EKWSDEFKDFL---KKCLQKNPEKRP 243

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 13/148 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFG----LHAFKAGQDETGQERKLRRRK 90
           G+ +LH+  II H +++ +N L+D++  ++I+DFG    L A        G    L+   
Sbjct: 118 GLNYLHNRGII-HRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSV 176

Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR 150
            + APE+++Q      T+K D++S G ++ E++  + P+     T  + I  +  G    
Sbjct: 177 FWMAPEVVKQTSY---TRKADIWSLGCLVVEMLTGKHPFP--DCTQLQAIFKI--GENAS 229

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           P+  S + +   I  +   +E D   RP
Sbjct: 230 PEIPS-NISSEAIDFLEKTFEIDHNKRP 256

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 10/106 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +LH + I+ H +++  N L++S  VL+I DFGL A     DE+    +    + Y+A
Sbjct: 115 GLKYLHSAGIL-HRDIKPGNLLVNSNCVLKICDFGL-ARVEEPDESKHMTQEVVTQYYRA 172

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGR------QGPWGHLRM 134
           PE+L        T   D++S G +  E++GR      Q P   L +
Sbjct: 173 PEILMGS--RHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDL 216

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 140 VSCTYQVARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTN 198

Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 199 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 253

Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 254 EGH--RMDKPA-NCTNELYMMMRDCWHAIPSHRPTFK 287

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 42/161 (26%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L +   I H +L + NC++     + +ADFGL                  +K+Y  
Sbjct: 125 GMEYLSNRNFI-HRDLAARNCMLREDMTVCVADFGL-----------------SKKIYSG 166

Query: 95  PELLRQPHLPRG---------------TQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEE 138
            +  RQ  + +                T K DV++FG+ ++E+  R Q P+  +   + E
Sbjct: 167 -DYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE--NHE 223

Query: 139 IITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           I   +  G+ L+ P+    DC   +   M +CW  DP+ RP
Sbjct: 224 IYDYLRHGNRLKQPE----DCLDELYDLMYSCWRADPKDRP 260

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           G+ ++H + I+ H +L+ +N LI +  VL+IADFGL   F   +      +   R   Y+
Sbjct: 111 GVAYMHANGIM-HRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRW--YR 167

Query: 94  APELLRQPHLPRGTQK----GDVYSFGLVLYEVIG 124
           APELL       G +K     D+++ G +  E++ 
Sbjct: 168 APELL------YGARKYDPGVDLWAVGCIFAELLN 196

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 334 VEPESFDSVTIYFSDIVGFTQLSAESTE 361
           V  +S+D+VTI F+DIVGFT LS+  + 
Sbjct: 1   VYAQSYDNVTILFADIVGFTALSSRHSP 28

Length = 184

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 20/148 (13%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK---LYKA 94
           +LH  + I H +L  +N ++     + I DFGL   K        E KL       LY  
Sbjct: 128 YLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQK------QPESKLTSVVGTILYSC 181

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SGLRPD 152
           PE+++  + P G +K DV++FG +LY++   Q P+    M    + T + +     L   
Sbjct: 182 PEIVK--NEPYG-EKADVWAFGCILYQMCTLQPPFYSTNML--SLATKIVEAVYEPLPEG 236

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDL 180
             S D    I +C+      D E RPD+
Sbjct: 237 MYSEDVTDVITSCLTP----DAEARPDI 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKL-- 91
            + +LH   II H +++  N L+D    V+++ DFGL         T     L    +  
Sbjct: 113 ALEYLHSKGII-HRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGT 171

Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
             Y APE+L    L   +   D++S G+ LYE++    P+
Sbjct: 172 PGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPF 211

Length = 384

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 26/164 (15%)

Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH------AFKAGQDETGQERK 85
              G+ +L+      + NL S + L+   + L+I   GL        FK           
Sbjct: 131 CCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNF------- 183

Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS-VT 144
                +Y + ++L        T K D+YS G+VL+E+   + P+ +  +T +EI    + 
Sbjct: 184 ----MVYFSYKMLNDIFSEY-TIKDDIYSLGVVLWEIFTGKIPFEN--LTTKEIYDLIIN 236

Query: 145 QGSGLRPDTSSLDCAPSIIACMRT-CWEEDPELRPDLRFVHHKL 187
           + + L+     LDC P  I C+   C   D   RP+++ + + L
Sbjct: 237 KNNSLKLP---LDC-PLEIKCIVEACTSHDSIKRPNIKEILYNL 276

Length = 283

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRR---RKL 91
           G+ ++H + +I H +L+ SN L++    L+I DFG+ A       T  +  +      + 
Sbjct: 119 GLKYIHSANVI-HRDLKPSNLLVNEDCELRIGDFGM-ARGLSSSPTEHKYFMTEYVATRW 176

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR 125
           Y+APELL    LP  T   D++S G +  E++GR
Sbjct: 177 YRAPELLLS--LPEYTTAIDMWSVGCIFAEMLGR 208

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +LHD   + H +++ +N L+D+  V+++ADFG+             +  +    + A
Sbjct: 114 GLEYLHDRNTV-HRDIKGANILVDTNGVVKLADFGMAKQVVEFSFA---KSFKGSPYWMA 169

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG----LR 150
           PE++ Q     G    D++S G  + E+   + PW  L    E +      G        
Sbjct: 170 PEVIAQQG-GYGLA-ADIWSLGCTVLEMATGKPPWSQL----EGVAAVFKIGRSKELPPI 223

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           PD  S +    I+ C++     DP LRP
Sbjct: 224 PDHLSDEAKDFILKCLQ----RDPSLRP 247

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 12/100 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRR--- 89
           G+ +LH++ I+ H +++++N LID++ +L+IADFGL         +  G      R+   
Sbjct: 127 GINYLHENHIL-HRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTN 185

Query: 90  ----KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR 125
               + Y+ PELL      R T   D++  G V  E+  R
Sbjct: 186 LVVTRWYRPPELLL--GERRYTTAVDIWGIGCVFAEMFTR 223

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L +  ++ H NL + N L+ S  ++QIADFG+       D+     + +    + A
Sbjct: 121 GMYYLEEHRMV-HRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMA 179

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGL-RPD 152
            E +      R T + DV+S+G+ ++E++     P+  +R    E+   + +G  L +P 
Sbjct: 180 LESI---LFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRP--HEVPDLLEKGERLAQPQ 234

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             ++D    +   M  CW  D  +RP  + + ++   M
Sbjct: 235 ICTID----VYMVMVKCWMIDENVRPTFKELANEFTRM 268

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           G+ +LH   +I H +++S N L+     +++ADFG     A Q     + K +R  +   
Sbjct: 128 GLEYLHSQNVI-HRDIKSDNILLSKDGSVKLADFGF----AAQ---LTKEKSKRNSVVGT 179

Query: 92  --YKAPEL-LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG 148
             + APE+  R+ +      K D++S G++  E+   + P  +LR      +  +T   G
Sbjct: 180 PYWMAPEVIKRKDY----GPKVDIWSLGIMCIEMAEGEPP--YLREPPLRALFLITT-KG 232

Query: 149 LRP--DTSSLDCAPSIIACMRTCWEEDPELRPD 179
           + P  +       P     +  C  +DPE RP 
Sbjct: 233 IPPLKNPEKWS--PEFKDFLNKCLVKDPEKRPS 263

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YKAPELLRQPHLPR 105
           H +L + N LI    +++I DFGL A    +D     +      L + APE +       
Sbjct: 262 HRDLAARNVLICEGKLVKICDFGL-ARDIMRDSNYISKGSTFLPLKWMAPESIFNNLY-- 318

Query: 106 GTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIA 164
            T   DV+SFG++L+E+    G P+  L M +E+   ++ +G  +     + D    I  
Sbjct: 319 -TTLSDVWSFGILLWEIFTLGGTPYPELPM-NEQFYNAIKRGYRMAKPAHASD---EIYE 373

Query: 165 CMRTCWEEDPELRPDLRFVHHKLKEM 190
            M+ CWEE  E+RPD   + H + ++
Sbjct: 374 IMQKCWEEKFEIRPDFSQLVHLVGDL 399

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQERKLRRRKLYK 93
           G+ HLH   II + +L+  N L+D+   ++I+D GL    K GQ +T   +       + 
Sbjct: 109 GLEHLHQRRII-YRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKT---KGYAGTPGFM 164

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
           APELL+           D ++ G+ LYE+I  +GP+
Sbjct: 165 APELLQGEEYDFSV---DYFALGVTLYEMIAARGPF 197

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQ--D 78
           I +I  +   ++  IH H    ISHG+++  N ++D      I D+G+  H    G+  +
Sbjct: 128 IKNIMKDMLTTLEYIHEHG---ISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIE 184

Query: 79  ETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
            + +++ L R  LY A   L   +    T++GD+ S G  + +  G + PW
Sbjct: 185 YSKEQKDLHRGTLYYAG--LDAHNGACVTRRGDLESLGYCMLKWAGIKLPW 233

Length = 294

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 21/153 (13%)

Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
             +G+ HLH  +I+ H +++S N  +D+   ++I D G+   K   D T     +     
Sbjct: 110 ILLGLAHLHSKKIL-HRDIKSLNLFLDAYDNVKIGDLGVA--KLLSDNTNFANTIVGTPY 166

Query: 92  YKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEE----IITSVTQG 146
           Y +PEL   +P+     +K DV++ G+VLYE    + P+      D      +I  + +G
Sbjct: 167 YLSPELCEDKPY----NEKSDVWALGVVLYECCTGKHPF------DANNQGALILKIIRG 216

Query: 147 SGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD 179
                   S   +  +   +  C  +D   RPD
Sbjct: 217 ---VFPPVSQMYSQQLAQLIDQCLTKDYRQRPD 246

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 20/91 (21%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQ-----ERKLRRRKL 91
           +LH   II + +L+  N L+D+   +++ DFGL     +    T       E        
Sbjct: 108 YLHSLGII-YRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPE-------- 158

Query: 92  YKAPE-LLRQPHLPRGTQKGDVYSFGLVLYE 121
           Y APE LL + +     +  D +S G++LYE
Sbjct: 159 YLAPEVLLGKGY----GKAVDWWSLGVLLYE 185

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 24/75 (32%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           G+ +LH + I+ H +++ SN LI++  VL++ADFGL             R   +R     
Sbjct: 112 GLQYLHSNGIL-HRDIKGSNILINNDGVLKLADFGL------------ARPYTKRNSADY 158

Query: 92  --------YKAPELL 98
                   Y+ PELL
Sbjct: 159 TNRVITLWYRPPELL 173

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 9/90 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ HLH + II H +L+ SN ++ S   L+I DFGL A  AG         + R   Y+A
Sbjct: 130 GIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGL-ARTAGTSFMMTPYVVTR--YYRA 185

Query: 95  PELLRQPHLPRGTQKG-DVYSFGLVLYEVI 123
           PE++    L  G ++  D++S G ++ E+I
Sbjct: 186 PEVI----LGMGYKENVDIWSVGCIMGEMI 211

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 43.6 bits (104), Expect = 8e-05
 Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 23/149 (15%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-----HAFKAGQDETGQERKLRRRKLY 92
           +LH  +I+ H +++  N  + S  ++++ DFG+           +   G          Y
Sbjct: 118 YLHSRKIL-HRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGT-------PYY 169

Query: 93  KAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
            +PEL + +P+      K D++S G VLYE+   + P+    +   E+   + +G    P
Sbjct: 170 LSPELCQNKPY----NYKSDIWSLGCVLYELCTLKHPFEGENL--LELALKILKGQ-YPP 222

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDL 180
             S       +   + +  ++DPE RP +
Sbjct: 223 IPSQYS--SELRNLVSSLLQKDPEERPSI 249

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+   H   I+ H +L+  N LI++  VL++ADFGL               + R   Y+A
Sbjct: 110 GLAFCHSHGIL-HRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTR--WYRA 166

Query: 95  PELL---RQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           PELL   +       +   D++S G +  E++ R+
Sbjct: 167 PELLLGDKGY-----STPVDIWSVGCIFAELLSRR 196

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 17/153 (11%)

Query: 34  VGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFG--LHAFKAGQDETGQERKLRRRKL 91
            G+ +LH   I+ H +++ +N  +D   V+++ DFG  +           + + L     
Sbjct: 110 EGLAYLHSHGIV-HRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPA 168

Query: 92  YKAPELLRQPHLPRGTQKG-----DVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG 146
           Y APE++       G  KG     D++S G V+ E+   + PW  L   D E       G
Sbjct: 169 YMAPEVIT-----GGKGKGHGRAADIWSLGCVVLEMATGKRPWSEL---DNEFQIMFHVG 220

Query: 147 SGLRPDT-SSLDCAPSIIACMRTCWEEDPELRP 178
           +G +P    SL  +P     +  C E DP+ RP
Sbjct: 221 AGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRP 253

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 20/138 (14%)

Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL---YKAPELLRQPHL 103
           H ++ + N L+ S   +++ DFGL   +  +DE+    K  + KL   + APE +   + 
Sbjct: 130 HRDIAARNVLVSSPDCVKLGDFGLS--RYLEDES--YYKASKGKLPIKWMAPESI---NF 182

Query: 104 PRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAP 160
            R T   DV+ FG+ ++E++  G + P+  +   + ++I  +  G  L  P     +C P
Sbjct: 183 RRFTSASDVWMFGVCMWEILMLGVK-PFQGV--KNNDVIGRIENGERLPMPP----NCPP 235

Query: 161 SIIACMRTCWEEDPELRP 178
           ++ + M  CW  DP  RP
Sbjct: 236 TLYSLMTKCWAYDPSKRP 253

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 28/125 (22%)

Query: 23  IGSISVNTT----ASVGMI--HLHDSEIISHGNLRSSNCLIDSRWVLQIADFG------- 69
            GS+    T    A + +   +LH   II H +L+  N L+D    ++I DFG       
Sbjct: 96  YGSLDEKCTRFYAAEILLALEYLHSKGII-HRDLKPENILLDKDMHIKITDFGTAKVLDP 154

Query: 70  ----LHAFKAGQDETGQERKLRRRK-------LYKAPELLRQPHLPRGTQKGDVYSFGLV 118
                       +   Q  K RRR         Y +PELL +       +  D+++ G +
Sbjct: 155 NSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPA---GKSSDLWALGCI 211

Query: 119 LYEVI 123
           +Y+++
Sbjct: 212 IYQML 216

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 22  PIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDE 79
           P   + + T  + GM  L    ++ H +L + N L+  +  ++I+D GL    + A   +
Sbjct: 123 PADFVHIVTQIAAGMEFLSSHHVV-HKDLATRNVLVFDKLNVKISDLGLFREVYAADYYK 181

Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDE 137
                 L  R  + +PE +      + +   D++S+G+VL+EV   G Q   G+   +++
Sbjct: 182 LMGNSLLPIR--WMSPEAIM---YGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY---SNQ 233

Query: 138 EIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           ++I  +     L  PD    DC   +   M  CW E P  RP  + +H +L+
Sbjct: 234 DVIEMIRNRQVLPCPD----DCPAWVYTLMLECWNEFPSRRPRFKDIHSRLR 281

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ ++H + ++ H +L+ SN L+++   L+I DFGL    + + +   E  + R   Y+A
Sbjct: 120 GLKYIHSANVL-HRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRW--YRA 176

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           PELL   +    T   DV+S G +  E++GR+
Sbjct: 177 PELLL--NCSEYTTAIDVWSVGCIFAELLGRK 206

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 34/156 (21%)

Query: 39  LHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQER--KLRRRKL----Y 92
           LH + II H +L+  N LIDS   L++ DFGL      + +       K  +R +    Y
Sbjct: 109 LHSNGII-HRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDY 167

Query: 93  KAPE-LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
            APE +L Q H    ++  D +S G +LYE +    P+     T EEI  ++  G     
Sbjct: 168 IAPEVILGQGH----SKTVDWWSLGCILYEFLVGIPPFH--GETPEEIFQNILNG----- 216

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
                          +  W ED E+  +   +  KL
Sbjct: 217 ---------------KIEWPEDVEVSDEAIDLISKL 237

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 15/144 (10%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG--QDETGQERKLRRRKLYKAP 95
           H+H   +I H +++S+N L+ S  ++++ DFG     A    D+ G  R       Y AP
Sbjct: 158 HVHSKHMI-HRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVG--RTFCGTPYYVAP 214

Query: 96  ELLRQ-PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           E+ R+ P+    ++K D++S G++LYE++  + P+    M  EE++     G   R D  
Sbjct: 215 EIWRRKPY----SKKADMFSLGVLLYELLTLKRPFDGENM--EEVMHKTLAG---RYDPL 265

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
               +P +   +      DP+ RP
Sbjct: 266 PPSISPEMQEIVTALLSSDPKRRP 289

Length = 496

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 9/96 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDE-TGQERKLRRRKLY 92
           G+ ++H + ++ H +L+  N L+++   L+I DFGL   F     E  G   +    + Y
Sbjct: 117 GLKYIHSANVL-HRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWY 175

Query: 93  KAPELL--RQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           +APE++   Q +    T+  DV+S G +L E++GR+
Sbjct: 176 RAPEIMLSFQSY----TKAIDVWSVGCILAELLGRK 207

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ            + Y +
Sbjct: 115 GLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSMANSFVGTRSYMS 170

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
           PE L+  H    + + D++S GL L E+ IGR
Sbjct: 171 PERLQGTHY---SVQSDIWSMGLSLVELAIGR 199

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 10/104 (9%)

Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 105 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 158

Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y +PE L+  H    + + D++S GL L E+ IGR
Sbjct: 159 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAIGR 199

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM++L +  ++ H +L + N L+ S   ++I DFGL     G ++       +    + A
Sbjct: 121 GMMYLEERRLV-HRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMA 179

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGL-RPD 152
            E +   H  + T + DV+S+G+ ++E++   G P+  +     EI   + +G  L +P 
Sbjct: 180 LECI---HYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI--PTREIPDLLEKGERLPQPP 234

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             ++D    +   M  CW  D + RP  + +  +   M
Sbjct: 235 ICTID----VYMVMVKCWMIDADSRPKFKELAAEFSRM 268

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 299 QERTNQLTQEKKKTDALLHRMLPRSVSESL 328
           +E   +L +EKKKTD LL+ MLP+SV+  L
Sbjct: 180 EEAHRELEEEKKKTDDLLYSMLPKSVANRL 209

The HNOBA domain is found associated with the HNOB domain and pfam00211 in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a heme-dependent sensor for gaseous ligands, and transduce diverse downstream signals, in both bacteria and animals. Length = 209

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 34  VGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQE-RKLRRRKLY 92
           +G+  LH   II H +++  N LID    L++ DFGL          G E +K      Y
Sbjct: 108 LGVEDLHQRGII-HRDIKPENLLIDQTGHLKLTDFGL-------SRNGLENKKFVGTPDY 159

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVI 123
            APE +         +  D +S G V++E +
Sbjct: 160 LAPETILGVG---DDKMSDWWSLGCVIFEFL 187

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ HLHD+ I+ H +L++SN L+++R +L+I DFGL A + G        +L     Y+A
Sbjct: 118 GVAHLHDNWIL-HRDLKTSNLLLNNRGILKICDFGL-AREYG-SPLKPYTQLVVTLWYRA 174

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVI 123
           PELL        +   D++S G +  E++
Sbjct: 175 PELLLGA--KEYSTAIDMWSVGCIFAELL 201

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 18/99 (18%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQE--------RKL 86
           G+ +LH + +I H +L+ SN L++S   L+I DFGL A     DE  +         R  
Sbjct: 115 GLKYLHSANVI-HRDLKPSNILVNSNCDLKICDFGL-ARGVDPDEDEKGFLTEYVVTR-- 170

Query: 87  RRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR 125
                Y+APELL      R T+  D++S G +  E++ R
Sbjct: 171 ----WYRAPELLLSSS--RYTKAIDIWSVGCIFAELLTR 203

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 18/165 (10%)

Query: 23  IGSISVNTTASVGMIH-LHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG 81
           +G ++V   A V  +H L +   + H +++ SN L+D+   +++ DFG+           
Sbjct: 116 LGKMTV---AIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLV------ 166

Query: 82  QERKLRRRK----LYKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD 136
            + K + R      Y APE +      P+   + DV+S G+ L E+   Q P+     T+
Sbjct: 167 -DSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPY-KNCKTE 224

Query: 137 EEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            E++T + Q         +   +P   + +  C  +D   RP  R
Sbjct: 225 FEVLTKILQEEPPSLP-PNEGFSPDFCSFVDLCLTKDHRKRPKYR 268

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM  L     I H +L + N L+    +++I DFGL A     D     +   R  + + 
Sbjct: 153 GMAFLASKNCI-HRDLAARNVLLTHGKIVKICDFGL-ARDIMNDSNYVVKGNARLPVKWM 210

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGL-RP 151
           APE +        T + DV+S+G++L+E+      P+  + + D +    + +G  + +P
Sbjct: 211 APESIFNCVY---TFESDVWSYGILLWEIFSLGSNPYPGMPV-DSKFYKLIKEGYRMAQP 266

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           + +  +    I   M+TCW+ DP  RP  + +   + + 
Sbjct: 267 EHAPAE----IYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           ++G+  LH   II + +L+  N ++D+   ++IADFG+   K         R       Y
Sbjct: 111 AIGLFFLHSKGII-YRDLKLDNVMLDAEGHIKIADFGM--CKENIFGGKTTRTFCGTPDY 167

Query: 93  KAPEL-LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
            APE+   QP+     +  D ++FG++LYE++  Q P+      ++E+  S+ +
Sbjct: 168 IAPEIIAYQPY----GKSVDWWAFGVLLYEMLAGQPPFDG--EDEDELFQSIME 215

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           SVG+  LH   II + +L+  N ++DS   ++IADFG+   K    +    R       Y
Sbjct: 111 SVGLFFLHRRGII-YRDLKLDNVMLDSEGHIKIADFGM--CKEHMVDGVTTRTFCGTPDY 167

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
            APE++   + P G +  D +++G++LYE++  Q P+
Sbjct: 168 IAPEII--AYQPYG-KSVDWWAYGVLLYEMLAGQPPF 201

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           G+  LH  E I + +L+  N L+D    ++I+D GL    A +   G+  + R   + Y 
Sbjct: 114 GLEDLH-RERIVYRDLKPENILLDDYGHIRISDLGL----AVEIPEGETIRGRVGTVGYM 168

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
           APE+++     R T   D +  G ++YE+I  + P+
Sbjct: 169 APEVVKN---ERYTFSPDWWGLGCLIYEMIEGKSPF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQERKLRRRKLYK 93
           G+ HLH   I+ + +L+  N L+D    ++I+D GL    K G+   G+         Y 
Sbjct: 107 GLEHLHQRRIV-YRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPG----YM 161

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
           APE+L+           D ++ G  LYE+I  + P+
Sbjct: 162 APEVLQGE---VYDFSVDWFALGCTLYEMIAGRSPF 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-----GQERKLRRR 89
           GM +L +  ++ H +L + N L+ S   ++I DFGL A     DET     G +  ++  
Sbjct: 121 GMSYLEEVRLV-HRDLAARNVLVKSPNHVKITDFGL-ARLLDIDETEYHADGGKVPIKWM 178

Query: 90  KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
            L     +L +    R T + DV+S+G+ ++E++   G   +  +   EI   + +G  L
Sbjct: 179 AL---ESILHR----RFTHQSDVWSYGVTVWELM-TFGAKPYDGIPAREIPDLLEKGERL 230

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
                   C   +   M  CW  D E RP  R +  +   M
Sbjct: 231 ---PQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRM 268

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 19/72 (26%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           G+ +LH + I+ H +L+ +N LI S  VL++ADFGL A   G            RK+   
Sbjct: 114 GLEYLHSNWIL-HRDLKPNNLLIASDGVLKLADFGL-ARSFGSP---------NRKMTHQ 162

Query: 92  -----YKAPELL 98
                Y+APELL
Sbjct: 163 VVTRWYRAPELL 174

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ            + Y +
Sbjct: 111 GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSMANSFVGTRSYMS 166

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
           PE L+  H    T + D++S GL L E+ IGR
Sbjct: 167 PERLQGTHY---TVQSDIWSLGLSLVEMAIGR 195

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           G+  LH   I+ + +L+  N L+D    ++I+D GL    A     GQ  K R   + Y 
Sbjct: 114 GLEDLHQERIV-YRDLKPENILLDDHGHIRISDLGL----AVHVPEGQTIKGRVGTVGYM 168

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
           APE+++     R T   D ++ G +LYE+I  Q P+
Sbjct: 169 APEVVKNE---RYTFSPDWWALGCLLYEMIAGQSPF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 7/68 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL-- 91
           G+ ++H ++I+ H +++++N LI    +L++ADFGL  AF     +  +  +   R +  
Sbjct: 131 GLYYIHRNKIL-HRDMKAANILITKDGILKLADFGLARAFS--LSKNSKPNRYTNRVVTL 187

Query: 92  -YKAPELL 98
            Y+ PELL
Sbjct: 188 WYRPPELL 195

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 33/152 (21%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL 97
           ++H + I+ H ++++ N  +    ++++ DFG+   K    E      +     Y +PEL
Sbjct: 116 YIHKAGIL-HRDIKTLNIFLTKAGLIKLGDFGIS--KILGSEYSMAETVVGTPYYMSPEL 172

Query: 98  LRQPHLPRGTQ---KGDVYSFGLVLYEVIGRQGPWGHLRMTDE-----EIITSVTQGS-- 147
            +      G +   K D+++ G VLYE++        L+ T +      ++  + QG+  
Sbjct: 173 CQ------GVKYNFKSDIWALGCVLYELLT-------LKRTFDATNPLNLVVKIVQGNYT 219

Query: 148 -GLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
             +   +S L      I+ + +  ++DPE RP
Sbjct: 220 PVVSVYSSEL------ISLVHSLLQQDPEKRP 245

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           + G+ H+H    + H +L   NC + S   +++ D+G+   +  +D    E        +
Sbjct: 109 AAGVTHMHKHNFL-HSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRW 167

Query: 93  KAPELLRQPH----LPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGS 147
            APEL+ + H        T+  +V++ G+ L+E+      P+ HL  +D E++  V +  
Sbjct: 168 LAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHL--SDREVLNHVIKDQ 225

Query: 148 GLRPDTSSLDCAPS--IIACMRTCWEEDPELRPDLRFVHHKL 187
            ++     L+   S      ++ CW   PE R     VH  L
Sbjct: 226 QVKLFKPQLELPYSERWYEVLQFCWLS-PEKRATAEEVHRLL 266

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 9/90 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ HLH + II H +L+ SN ++ S   L+I DFGL A  AG         + R   Y+A
Sbjct: 138 GIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGL-ARTAGTSFMMTPYVVTR--YYRA 193

Query: 95  PELLRQPHLPRGTQKG-DVYSFGLVLYEVI 123
           PE++    L  G ++  D++S G ++ E+I
Sbjct: 194 PEVI----LGMGYKENVDIWSVGCIMGEMI 219

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           ++G+  LH   II + +L+  N ++DS   ++IADFG+   K    +    +       Y
Sbjct: 111 AIGLFFLHSKGII-YRDLKLDNVMLDSEGHIKIADFGM--CKENMWDGVTTKTFCGTPDY 167

Query: 93  KAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
            APE++  QP+     +  D ++FG++LYE++  Q P+
Sbjct: 168 IAPEIIAYQPY----GKSVDWWAFGVLLYEMLAGQAPF 201

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 17/102 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-----TGQERKLRRR 89
           G+  LH    + H +L  +N  I+S+ + +IADFGL A + G        +  E   RR 
Sbjct: 131 GLNVLHKWYFM-HRDLSPANIFINSKGICKIADFGL-ARRYGYPPYSDTLSKDETMQRRE 188

Query: 90  KL--------YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI 123
           ++        Y+APELL      +     D++S G +  E++
Sbjct: 189 EMTSKVVTLWYRAPELLMGAE--KYHFAVDMWSVGCIFAELL 228

Length = 335

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ--DETGQERKLRRRKLY 92
           G+ +LH  + I H +++++N L+     +++ADFG+    AGQ  D   +         +
Sbjct: 113 GLDYLHSEKKI-HRDIKAANVLLSEHGEVKLADFGV----AGQLTDTQIKRNTFVGTPFW 167

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
            APE+++Q        K D++S G+   E+   + P  H  +   +++  + + +   P 
Sbjct: 168 MAPEVIKQSAY---DSKADIWSLGITAIELAKGEPP--HSELHPMKVLFLIPKNN---PP 219

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLR-FVHHKLKEMNA 192
           T   + +  +   +  C  ++P  RP  +  + HK     A
Sbjct: 220 TLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRFA 260

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 18  PFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ 77
           P  I +G I+V T  ++   +L +   I H +++ SN L+D    +++ DFG+    +GQ
Sbjct: 105 PEEI-LGKIAVATVKALN--YLKEELKIIHRDVKPSNILLDRNGNIKLCDFGI----SGQ 157

Query: 78  --DETGQERKLRRRKLYKAPELLRQPHLPRGTQ-KGDVYSFGLVLYEVIGRQGP---WGH 131
             D   + R    R  Y APE +  P    G   + DV+S G+ LYEV   + P   W  
Sbjct: 158 LVDSIAKTRDAGCRP-YMAPERI-DPSARDGYDVRSDVWSLGITLYEVATGKFPYPKW-- 213

Query: 132 LRMTDEEIITSVTQGSG--LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
              +  + +T V +G    L       + +PS +  +  C  +D   RP     + +L E
Sbjct: 214 --NSVFDQLTQVVKGDPPILSNS-EEREFSPSFVNFINLCLIKDESKRPK----YKELLE 266

Query: 190 MN 191
             
Sbjct: 267 HP 268

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ--DETGQERKLRRRKLY 92
           G+ +LH ++ I H ++++ N L++     ++ADFG+    +GQ  D   +   +     +
Sbjct: 111 GLEYLHSNKKI-HRDIKAGNILLNEEGQAKLADFGV----SGQLTDTMAKRNTVIGTPFW 165

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYE 121
            APE++++        K D++S G+   E
Sbjct: 166 MAPEVIQE---IGYNNKADIWSLGITAIE 191

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD---ETGQERKLRRRKL 91
           G+ +LH + I+ H +++ +N L DS   +++ DFG  A K  Q         + +     
Sbjct: 116 GVEYLHSNMIV-HRDIKGANILRDSAGNVKLGDFG--ASKRLQTICSSGTGMKSVTGTPY 172

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHL 132
           + +PE++      R   K DV+S G  + E++  + PW   
Sbjct: 173 WMSPEVISGEGYGR---KADVWSVGCTVVEMLTEKPPWAEF 210

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 9/90 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ HLH + II H +L+ SN ++ S   L+I DFGL A  AG         + R   Y+A
Sbjct: 131 GIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGL-ARTAGTSFMMTPYVVTR--YYRA 186

Query: 95  PELLRQPHLPRGTQKG-DVYSFGLVLYEVI 123
           PE++    L  G ++  D++S G ++ E++
Sbjct: 187 PEVI----LGMGYKENVDIWSVGCIMGEMV 212

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
           S+G+ H+HD +I+ H +++S N  +     V ++ DFG+   +   D             
Sbjct: 111 SLGLKHIHDRKIL-HRDIKSQNIFLSKNGMVAKLGDFGIA--RQLNDSMELAYTCVGTPY 167

Query: 92  YKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
           Y +PE+ + +P+      K D++S G VLYE+   + P+
Sbjct: 168 YLSPEICQNRPY----NNKTDIWSLGCVLYELCTLKHPF 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 23/149 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG---QDETGQERKLRRRKL 91
           G+  LH+ +I+ H +L+S+N L+ +  +++I D G+         + + G          
Sbjct: 115 GLQALHEQKIL-HRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGT-------PH 166

Query: 92  YKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR 150
           Y APE+ + +P+    + K D++S G +LYE+     P+    M  +++   V +G    
Sbjct: 167 YMAPEVWKGRPY----SYKSDIWSLGCLLYEMATFAPPFEARSM--QDLRYKVQRGKYPP 220

Query: 151 -PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            P   S D    I + ++      P+LRP
Sbjct: 221 IPPIYSQDLQNFIRSMLQV----KPKLRP 245

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 16/151 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +LH  +II H +++ SN L+  +  +++ DFG+    +G+              Y A
Sbjct: 117 GLSYLHSRKII-HRDIKPSNILLTRKGQVKLCDFGV----SGELVNSLAGTFTGTSFYMA 171

Query: 95  PELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPW---GHLRMTDEEIITSVTQGSGLR 150
           PE ++ +P+    +   DV+S GL L EV   + P+   G   +   E+++ +       
Sbjct: 172 PERIQGKPY----SITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPE 227

Query: 151 -PDTSSLDC--APSIIACMRTCWEEDPELRP 178
             D        +      ++ C E+DP  RP
Sbjct: 228 LKDEPGNGIKWSEEFKDFIKQCLEKDPTRRP 258

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G I+V      G+ +L++   I H +++ SN L++SR  +++ DFG+    +G+     
Sbjct: 105 LGKIAVAVVE--GLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGV----SGELINSI 158

Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
                    Y +PE ++       T K DV+S G+ + E+   + P+
Sbjct: 159 ADTFVGTSTYMSPERIQGGKY---TVKSDVWSLGISIIELALGKFPF 202

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 38.2 bits (90), Expect = 0.004
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 15/94 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL-- 91
           G+ + H   I+ H +L+  N LI+   VL++ADFGL  AF          R      +  
Sbjct: 110 GLAYCHSHRIL-HRDLKPQNILINRDGVLKLADFGLARAF------GIPLRTYTHEVVTL 162

Query: 92  -YKAPE-LLRQPHLPRGTQKGDVYSFGLVLYEVI 123
            Y+APE LL   H    T   D++S G +  E+I
Sbjct: 163 WYRAPEILLGSKHY--STAV-DIWSVGCIFAEMI 193

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           ++ + HLH   II + +L+  N L+D    +++ DFGL   K   D   +         Y
Sbjct: 108 ALALDHLHSLGII-YRDLKPENILLDEEGHIKLTDFGLS--KESIDHEKKAYSFCGTVEY 164

Query: 93  KAPELL-RQPHLPRGTQKGDVYSFGLVLYEVI 123
            APE++ R+ H    TQ  D +SFG++++E++
Sbjct: 165 MAPEVVNRRGH----TQSADWWSFGVLMFEML 192

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
KOG1023|consensus	484		100.0
KOG4171|consensus	671		100.0
KOG0192|consensus	362		99.98
KOG0197|consensus	468		99.97
KOG0581|consensus	364		99.97
KOG0193|consensus	678		99.97
KOG0591|consensus	375		99.96
KOG0575|consensus	592		99.96
KOG4721|consensus	904		99.96
KOG0615|consensus	475		99.96
PTZ00283	496	serine/threonine protein kinase; Provisional	99.96
KOG1026|consensus	774		99.95
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.95
KOG0582|consensus	516		99.95
KOG0198|consensus	313		99.95
PHA02988	283	hypothetical protein; Provisional	99.95
KOG0592|consensus	604		99.95
KOG1095|consensus	1025		99.95
KOG0598|consensus	357		99.95
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.95
KOG0201|consensus	467		99.94
KOG0578|consensus	550		99.94
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.94
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.94
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.94
PHA02882	294	putative serine/threonine kinase; Provisional	99.94
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.94
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.94
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.94
KOG0583|consensus	370		99.94
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.94
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.94
KOG0983|consensus	391		99.94
KOG0588|consensus	786		99.94
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.94
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.93
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.93
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.93
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.93
KOG0661|consensus	538		99.93
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.93
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.93
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.93
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.93
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.93
KOG0599|consensus	411		99.93
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.93
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.93
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.93
KOG0585|consensus	576		99.93
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.93
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.93
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.93
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.93
KOG0593|consensus	396		99.93
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.93
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.93
KOG0595|consensus	429		99.93
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.93
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.93
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.93
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.93
KOG1187|consensus	361		99.93
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.93
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.93
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.93
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.93
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.93
PTZ00267	478	NIMA-related protein kinase; Provisional	99.93
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.93
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.93
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.93
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.93
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.93
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.93
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.93
KOG4278|consensus	1157		99.92
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.92
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.92
KOG0033|consensus	355		99.92
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.92
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.92
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.92
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.92
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.92
KOG2345|consensus	302		99.92
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.92
KOG0660|consensus	359		99.92
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.92
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.92
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.92
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.92
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.92
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.92
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.92
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.92
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.92
KOG0196|consensus	996		99.92
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.92
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.92
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.92
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.92
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.92
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.92
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.92
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.92
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.92
KOG0616|consensus	355		99.92
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.92
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.92
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.92
KOG0194|consensus	474		99.92
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.92
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.92
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.92
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.92
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.92
KOG4257|consensus	974		99.92
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.92
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.92
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.92
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.92
KOG0200|consensus	609		99.92
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.92
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.92
KOG1024|consensus	563		99.92
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.92
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.92
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.92
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.92
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.92
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.92
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.92
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.92
PHA03212	391	serine/threonine kinase US3; Provisional	99.92
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.92
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.92
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.92
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.92
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.92
KOG0694|consensus	694		99.92
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.92
KOG0597|consensus	808		99.92
PHA03207	392	serine/threonine kinase US3; Provisional	99.92
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.92
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.92
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.92
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.92
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.92
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.92
PTZ00036	440	glycogen synthase kinase; Provisional	99.92
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.92
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.92
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.92
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.91
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.91
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.91
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.91
KOG0596|consensus	677		99.91
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.91
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.91
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.91
KOG0600|consensus	560		99.91
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.91
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.91
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.91
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.91
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.91
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.91
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.91
PHA03211	461	serine/threonine kinase US3; Provisional	99.91
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.91
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.91
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.91
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.91
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.91
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.91
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.91
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.91
PTZ00284	467	protein kinase; Provisional	99.91
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.91
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.91
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.91
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.91
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.91
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.91
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.91
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.91
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.91
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.91
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.91
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.91
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.91
KOG0589|consensus	426		99.91
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.91
KOG1094|consensus	807		99.91
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.91
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.91
KOG0658|consensus	364		99.91
PHA03209	357	serine/threonine kinase US3; Provisional	99.91
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.91
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.91
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.91
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.91
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.91
KOG0199|consensus	1039		99.91
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.91
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.91
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.91
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.91
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.91
KOG0594|consensus	323		99.91
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.91
KOG0659|consensus	318		99.91
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.91
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.91
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.91
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.9
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.9
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.9
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.9
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.9
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.9
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.9
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.9
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.9
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.9
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.9
KOG0579|consensus	1187		99.9
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.9
KOG1035|consensus	1351		99.9
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.9
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.9
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.9
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.9
KOG0603|consensus	612		99.9
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.9
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.9
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.9
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.9
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.9
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.9
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.9
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.9
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.9
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.9
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.9
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.9
KOG0577|consensus	948		99.9
PHA03210	501	serine/threonine kinase US3; Provisional	99.9
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.9
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.9
KOG1989|consensus	738		99.9
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.9
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.9
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.9
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.9
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.9
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.9
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.9
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.9
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.9
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.9
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.9
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.9
KOG0611|consensus	668		99.9
KOG0605|consensus	550		99.9
KOG4279|consensus	1226		99.9
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.9
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.9
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.9
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.89
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.89
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.89
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.89
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.89
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.89
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.89
KOG0604|consensus	400		99.89
KOG4645|consensus	1509		99.89
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.89
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.89
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.89
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.89
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.89
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.89
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.89
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.89
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.89
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.89
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.89
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.89
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.89
KOG0032|consensus	382		99.89
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.89
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.89
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.89
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.89
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.89
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.89
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.89
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.89
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.89
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.89
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.89
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.88
KOG0584|consensus	632		99.88
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.88
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.88
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.88
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.88
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.88
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.88
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.88
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.88
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.88
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.88
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.88
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.88
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.88
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.88
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.88
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.88
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.88
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.88
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.88
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.88
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.88
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.88
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.88
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.88
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.88
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.88
KOG0667|consensus	586		99.88
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.88
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.88
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.88
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.88
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.88
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.87
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.87
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.87
KOG0663|consensus	419		99.87
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.87
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.87
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.87
KOG1027|consensus	903		99.87
KOG0580|consensus	281		99.87
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.87
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.87
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.87
KOG0986|consensus	591		99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
PLN00009	294	cyclin-dependent kinase A; Provisional	99.87
KOG1025|consensus	1177		99.87
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.87
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.87
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.87
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.87
KOG4717|consensus	864		99.87
KOG1006|consensus	361		99.87
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.86
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.86
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.86
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.86
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.86
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.86
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.86
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.86
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.86
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.86
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.85
KOG0614|consensus	732		99.85
KOG2052|consensus	513		99.85
KOG3653|consensus	534		99.85
KOG0690|consensus	516		99.85
KOG0574|consensus	502		99.85
KOG0696|consensus	683		99.84
KOG0984|consensus	282		99.84
KOG0610|consensus	459		99.84
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
KOG0666|consensus	438		99.83
KOG0671|consensus	415		99.83
KOG0669|consensus	376		99.83
KOG0664|consensus	449		99.82
KOG4236|consensus	888		99.81
KOG1151|consensus	775		99.8
KOG0586|consensus	596		99.8
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.8
KOG0612|consensus	1317		99.8
KOG0607|consensus	463		99.8
KOG0665|consensus	369		99.79
KOG0695|consensus	593		99.79
KOG4250|consensus	732		99.76
KOG0587|consensus	953		99.76
KOG0668|consensus	338		99.75
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.74
KOG0608|consensus	1034		99.73
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.71
KOG0662|consensus	292		99.7
KOG0670|consensus	752		99.7
KOG1345|consensus	378		99.69
KOG0195|consensus	448		99.68
KOG0590|consensus	601		99.68
KOG0576|consensus	829		99.63
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.62
KOG1152|consensus	772		99.59
KOG1240|consensus	1431		99.59
KOG3618|consensus	1318		99.59
KOG3619|consensus	867		99.56
KOG0606|consensus	1205		99.55
KOG4158|consensus	598		99.54
KOG1290|consensus	590		99.53
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.52
KOG1033|consensus	516		99.52
KOG1164|consensus	322		99.51
KOG1167|consensus	418		99.5
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.49
KOG0603|consensus	612		99.46
smart00044	194	CYCc Adenylyl- / guanylyl cyclase, catalytic domai	99.35
KOG1163|consensus	341		99.19
KOG1165|consensus	449		99.19
PRK09188	365	serine/threonine protein kinase; Provisional	99.14
KOG0590|consensus	601		99.05
PRK12274	218	serine/threonine protein kinase; Provisional	99.0
KOG1166|consensus	974		98.91
KOG2137|consensus	700		98.79
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.79
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.78
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.76
PF00211	184	Guanylate_cyc: Adenylate and Guanylate cyclase cat	98.71
KOG3618|consensus	1318		98.7
COG2114	227	CyaA Adenylate cyclase, family 3 (some proteins co	98.62
KOG1266|consensus	458		98.61
COG4248	637	Uncharacterized protein with protein kinase and he	98.61
KOG3619|consensus	867		98.5
KOG0606|consensus	1205		98.49
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.47
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.45
smart00090	237	RIO RIO-like kinase.	98.45
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.3
KOG0601|consensus	524		98.28
PRK14879	211	serine/threonine protein kinase; Provisional	98.28
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.25
PRK10345	210	hypothetical protein; Provisional	98.25
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.19
cd07302	177	CHD cyclase homology domain. Catalytic domains of	98.04
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	97.88
PF07701	219	HNOBA: Heme NO binding associated; InterPro: IPR01	97.81
KOG1243|consensus	690		97.72
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.7
KOG0601|consensus	524		97.7
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.63
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.62
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	97.51
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.37
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.3
KOG3087|consensus	229		97.22
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	96.94
KOG3741|consensus	655		96.85
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	96.62
PRK09902	216	hypothetical protein; Provisional	96.26
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	96.16
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	94.8
COG0478	304	RIO-like serine/threonine protein kinase fused to	94.26
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	93.25
KOG1035|consensus	1351		92.87
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	91.11
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	90.69
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	89.81
PRK05231	319	homoserine kinase; Provisional	89.34
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	88.86
PRK10271	188	thiK thiamine kinase; Provisional	88.5
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	88.45
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	88.4
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	88.33
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	87.8
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	87.18
PF01636	239	APH: Phosphotransferase enzyme family This family	87.04
KOG0576|consensus	829		86.98
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	85.7
KOG1826|consensus	2724		84.91
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	84.73
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	83.41
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	83.36
COG0661	517	AarF Predicted unusual protein kinase [General fun	82.35
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	82.31
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	82.31
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	82.29
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	82.23

>KOG1023|consensus

Probab=100.00  E-value=5.2e-59  Score=466.78  Aligned_cols=316  Identities=43%  Similarity=0.654  Sum_probs=273.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      +.+++.+|+.||.|||.+.+.+||.|++.||++|.+|.+||+|||+.....................|.|||.+++....
T Consensus        50 ~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~  129 (484)
T KOG1023|consen   50 ILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQ  129 (484)
T ss_pred             HHHHHHHHHHHHHHHhcCcceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccc
Confidence            78999999999999999998789999999999999999999999998766431111111223345679999999985321


Q ss_pred             C----CCCccchHHHHHHHHHHHhCCCCCCCC--CCChHHHHHHHhc-C-CCCCCCCCCC-CchHHHHHHHHHhhhcCCC
Q psy1840         105 R----GTQKGDVYSFGLVLYEVIGRQGPWGHL--RMTDEEIITSVTQ-G-SGLRPDTSSL-DCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus       105 ~----~s~ksDVyS~Giil~elltg~~Pf~~~--~~~~~~i~~~i~~-~-~~~~p~~~~~-~~~~~l~~Li~~C~~~dP~  175 (423)
                      .    .++++||||||++++|+++++.||...  ...+.+++..+.. + .+.+|..... ..++.+..++++||.++|+
T Consensus       130 ~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~  209 (484)
T KOG1023|consen  130 SLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPE  209 (484)
T ss_pred             cccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChh
Confidence            2    588999999999999999999999763  4445678888877 3 3467776643 5677899999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc--CCChHHHHHHHHHHhhhcccccchhhHHhhccCCCCCCCCchhhHHHHHHHHHhhhhhh
Q psy1840         176 LRPDLRFVHHKLKEMNAGL--KANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMGPCSRAASRILVFWLFGLLDKIC  253 (423)
Q Consensus       176 ~RPt~~~I~~~L~~i~~~~--~~~~~d~~~~~~e~~~~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (423)
                      +||++.+|...++.+....  +.+++|+++.+|++|+++||+                                      
T Consensus       210 ~rPs~~~i~~~~~~~~~~~~~~~nl~D~m~~~le~Y~~nLe~--------------------------------------  251 (484)
T KOG1023|consen  210 KRPSIEQIRSKLLTINKGGSSKGNLMDSLFRMLESYADNLEK--------------------------------------  251 (484)
T ss_pred             hCccHHHHHhhhhhhcccccccchhHHHHHHHHHHHHhhhHH--------------------------------------
Confidence            9999999999999999875  469999999999999999999                                      


Q ss_pred             heeeeechhhhhhhhhhhccccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHhCCCC
Q psy1840         254 TIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDF  333 (423)
Q Consensus       254 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~e~~~~~~ll~~~lp~~ia~~l~~g~~  333 (423)
                                                                 .|+|++++|+.|++|+|.||++|||++||++||.|+.
T Consensus       252 -------------------------------------------~v~eRt~~l~~e~~k~d~LL~~mLP~~VA~~lk~G~~  288 (484)
T KOG1023|consen  252 -------------------------------------------LVDERTAELEEEKKKTDTLLGQMLPKSVAESLKLGKT  288 (484)
T ss_pred             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhcCHHHhhHhhcCCc
Confidence                                                       9999999999999999999999999999999999999


Q ss_pred             CCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC---------CcchHHHH-
Q psy1840         334 VEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR---------HRPHESKV-  402 (423)
Q Consensus       334 ~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~---------~~~~~~~~-  402 (423)
                      |.|+.|++|||+|+||||||.+|+.++|++||++|||+|+ ||.+|+.+|+|||||+||.||         ...|+.+| 
T Consensus       289 v~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H~~eia  368 (484)
T KOG1023|consen  289 VDPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRHAREIA  368 (484)
T ss_pred             CCccccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHHHHHHH
Confidence            9999999999999999999999999999999999999999 999999999999999999999         44578887 


Q ss_pred             hhhhhhchHhh-hhhcCCCC
Q psy1840         403 SLALSSLSIAD-IQMLRPTN  421 (423)
Q Consensus       403 ~~~~~~~~~~~-~~~~~~~~  421 (423)
                      .|+|.+++.+. +.++|++.
T Consensus       369 ~msl~~~~~~~~f~i~H~P~  388 (484)
T KOG1023|consen  369 SMALGLRSFLESFSLPHRPW  388 (484)
T ss_pred             HHHHHHHHHHhccCCCCCCc
Confidence            67888776653 56666665

>KOG4171|consensus

Probab=100.00  E-value=4.8e-34  Score=289.56  Aligned_cols=160  Identities=31%  Similarity=0.352  Sum_probs=141.7

Q ss_pred             hhhhhheeeeechhhhhhhhhhhccccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Q psy1840         249 LDKICTIFVFLSETKAENWALHQGRIQDFGFWAFWFTGQNLHHFRVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESL  328 (423)
Q Consensus       249 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~e~~~~~~ll~~~lp~~ia~~l  328 (423)
                      ++.+....+|++ +.+.+.++|+..+-.-...+...-+...++.  +..+++.+++|+.||+|+|+|||+|+|++||++|
T Consensus       353 LdeL~~~GLyLs-DiplHDatRDlILl~~Q~~aq~el~~~lE~~--~~~Le~~~~~Le~EKkkTd~LLy~mlP~~VA~qL  429 (671)
T KOG4171|consen  353 LDELTGRGLYLS-DIPLHDATRDLVLLGQQRRAQLELNLELEKL--KEKLEKMTRELEEEKKKTDTLLYSMLPRSVAQQL  429 (671)
T ss_pred             hHHHHhCCceec-cCCccccchhheecchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHH
Confidence            777777777776 9999999999988887777777665555444  5699999999999999999999999999999999


Q ss_pred             hCCCCCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC-----------Cc
Q psy1840         329 KRGDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR-----------HR  396 (423)
Q Consensus       329 ~~g~~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~-----------~~  396 (423)
                      ++|+.+.|++|++|||+|+||||||++|+.|+|+|||++||++|| ||++|+.+|||||||+||.||           ||
T Consensus       430 r~g~~v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~~~HA  509 (671)
T KOG4171|consen  430 RQGESVDAKEFDDVTILFSDIVGFTAICSQCTPMQVVNMLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDASDYHA  509 (671)
T ss_pred             HcCCCcCccccCceEEEEeccchHHhHhhccCcHHHHHHHHHHHHHHHHhhcccCeEEEeeccchheeecCCCCCChhHH
Confidence            999999999999999999999999999999999999999999999 999999999999999999999           66


Q ss_pred             chHHHHhhhhhhchHhh
Q psy1840         397 PHESKVSLALSSLSIAD  413 (423)
Q Consensus       397 ~~~~~~~~~~~~~~~~~  413 (423)
                      .+++.+|  |.|+..|+
T Consensus       510 e~i~~~A--L~Mm~~ak  524 (671)
T KOG4171|consen  510 EHIADLA--LGMMEEAK  524 (671)
T ss_pred             HHHHHHH--HHHHHHhh
Confidence            6666655  55555554

>KOG0192|consensus

Probab=99.98  E-value=4.4e-32  Score=267.65  Aligned_cols=161  Identities=34%  Similarity=0.575  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHhCC-CeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSE-IISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~-ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ++.++.||+.||+|||+.+ || ||||||+|||++.++ ++||+|||+++......  .......||+.|||||++++. 
T Consensus       144 ~l~~aldiArGm~YLH~~~~iI-HrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~--~~~~~~~GT~~wMAPEv~~~~-  219 (362)
T KOG0192|consen  144 RLRIALDIARGMEYLHSEGPII-HRDLKSDNILVDLKGKTLKIADFGLSREKVISK--TSMTSVAGTYRWMAPEVLRGE-  219 (362)
T ss_pred             HHHHHHHHHHHHHHHhcCCCee-ecccChhhEEEcCCCCEEEECCCccceeecccc--ccccCCCCCccccChhhhcCC-
Confidence            7999999999999999999 67 999999999999998 99999999998765332  122336899999999999954 


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ...++.|+|||||||++|||+||+.||.+.  ...++...+..+ ..+|..+. .+++.+..+|.+||+.||+.||+|.+
T Consensus       220 ~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~--~~~~~~~~v~~~-~~Rp~~p~-~~~~~l~~l~~~CW~~dp~~RP~f~e  295 (362)
T KOG0192|consen  220 KSPYTEKSDVYSFGIVLWELLTGEIPFEDL--APVQVASAVVVG-GLRPPIPK-ECPPHLSSLMERCWLVDPSRRPSFLE  295 (362)
T ss_pred             CCcCCccchhhhHHHHHHHHHHCCCCCCCC--CHHHHHHHHHhc-CCCCCCCc-cCCHHHHHHHHHhCCCCCCcCCCHHH
Confidence            123499999999999999999999999854  335555555432 24454443 48999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      |+..|..+...
T Consensus       296 i~~~l~~~~~~  306 (362)
T KOG0192|consen  296 IVSRLESIMSH  306 (362)
T ss_pred             HHHHHHHHHHh
Confidence            99999887653

>KOG0197|consensus

Probab=99.97  E-value=1.9e-31  Score=263.98  Aligned_cols=159  Identities=28%  Similarity=0.529  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      -+.++.|||+||+||+++++| ||||..+||||+.+..+||+|||+++...+. .........-...|+|||.+....+ 
T Consensus       305 Ll~~a~qIaeGM~YLes~~~I-HRDLAARNiLV~~~~~vKIsDFGLAr~~~d~-~Y~~~~~~kfPIkWtAPEa~~~~~F-  381 (468)
T KOG0197|consen  305 LLDFAAQIAEGMAYLESKNYI-HRDLAARNILVDEDLVVKISDFGLARLIGDD-EYTASEGGKFPIKWTAPEALNYGKF-  381 (468)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-chhhhhhheeeccCceEEEcccccccccCCC-ceeecCCCCCCceecCHHHHhhCCc-
Confidence            489999999999999999999 9999999999999999999999999954333 2222222233455999999988766 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.|||||||||+||||+| |+.||.  .++..++++.+.+|.....   +..||+++.++|+.||+.+|++||||..+
T Consensus       382 --S~kSDVWSFGVlL~E~fT~G~~py~--~msn~ev~~~le~GyRlp~---P~~CP~~vY~lM~~CW~~~P~~RPtF~~L  454 (468)
T KOG0197|consen  382 --SSKSDVWSFGVLLWELFTYGRVPYP--GMSNEEVLELLERGYRLPR---PEGCPDEVYELMKSCWHEDPEDRPTFETL  454 (468)
T ss_pred             --ccccceeehhhhHHHHhccCCCCCC--CCCHHHHHHHHhccCcCCC---CCCCCHHHHHHHHHHhhCCcccCCCHHHH
Confidence              999999999999999998 788987  6788999999999864432   23699999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ...+.++...
T Consensus       455 ~~~l~~~~~~  464 (468)
T KOG0197|consen  455 REVLEDFFTS  464 (468)
T ss_pred             HHHHHHhhhc
Confidence            9888877653

>KOG0581|consensus

Probab=99.97  E-value=5.2e-31  Score=250.47  Aligned_cols=151  Identities=22%  Similarity=0.383  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          26 ISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      -+++.++++||.|||. .+|| ||||||+|+||+++|.|||||||.++.+...    ...++.||..|||||.+.+..+ 
T Consensus       181 ~~ia~~VL~GL~YLh~~~~II-HRDIKPsNlLvNskGeVKicDFGVS~~lvnS----~a~tfvGT~~YMsPERi~g~~Y-  254 (364)
T KOG0581|consen  181 GKIARAVLRGLSYLHEERKII-HRDIKPSNLLVNSKGEVKICDFGVSGILVNS----IANTFVGTSAYMSPERISGESY-  254 (364)
T ss_pred             HHHHHHHHHHHHHHhhccCee-eccCCHHHeeeccCCCEEeccccccHHhhhh----hcccccccccccChhhhcCCcC-
Confidence            3899999999999996 7887 9999999999999999999999999876544    3367899999999999999876 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCC---CCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHL---RMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~---~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                        +.++||||||+.++|+.+|+.||...   .....+++..|..+++.+  .+...+++++..++..|+++||.+||++.
T Consensus       255 --s~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~--lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~  330 (364)
T KOG0581|consen  255 --SVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPR--LPEGEFSPEFRSFVSCCLRKDPSERPSAK  330 (364)
T ss_pred             --CcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCC--CCcccCCHHHHHHHHHHhcCCcccCCCHH
Confidence              89999999999999999999999753   345677888888764333  33335999999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      +++++
T Consensus       331 qLl~H  335 (364)
T KOG0581|consen  331 QLLQH  335 (364)
T ss_pred             HHhcC
Confidence            99775

>KOG0193|consensus

Probab=99.97  E-value=1.2e-30  Score=260.21  Aligned_cols=165  Identities=28%  Similarity=0.445  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      -+.|+.||++||.|||.++|| |||||+.||++.++++|||+|||++....--..........|...|||||+++.....
T Consensus       490 ~idIAqQiaqGM~YLHAK~II-HrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~n  568 (678)
T KOG0193|consen  490 TIDIAQQIAQGMDYLHAKNII-HRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDN  568 (678)
T ss_pred             HHHHHHHHHHhhhhhhhhhhh-hhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccC
Confidence            379999999999999999999 9999999999999999999999997643222222223445678889999999977655


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-CCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      +++..+||||||||+|||++|..||.  ....++++-.+-+|.. .++.....+|+.++.+|+..||..++++||.|.+|
T Consensus       569 PfS~qSDVYaFGiV~YELltg~lPys--i~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~i  646 (678)
T KOG0193|consen  569 PFSFQSDVYAFGIVWYELLTGELPYS--IQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQL  646 (678)
T ss_pred             CCCcccchhhhhHHHHHHHhCcCCcC--CCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHH
Confidence            77999999999999999999999997  3445666666666521 22333356899999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      +..|..+..
T Consensus       647 l~~l~~l~~  655 (678)
T KOG0193|consen  647 LSKLEELLP  655 (678)
T ss_pred             HHHHHHhhh
Confidence            998877765

>KOG0591|consensus

Probab=99.96  E-value=1.1e-28  Score=226.34  Aligned_cols=153  Identities=22%  Similarity=0.367  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHh---CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          26 ISVNTTASVGMIHLHD---SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~---~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .++..|++.||.++|+   +|.|.||||||.||+|+.+|.|||+|||+++++....  ....+..|||.||+||.+.+..
T Consensus       127 wk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~--tfA~S~VGTPyYMSPE~i~~~~  204 (375)
T KOG0591|consen  127 WKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKT--TFAHSLVGTPYYMSPERIHESG  204 (375)
T ss_pred             HHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchh--HHHHhhcCCCcccCHHHHhcCC
Confidence            5889999999999998   3666799999999999999999999999999875332  2345789999999999999887


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.|+||||+||++|||+.-+.||.+.  +..++..++.++..  |+.+...++..+..|+..|+..||+.||+...
T Consensus       205 Y---~~kSDiWslGCllyEMcaL~~PF~g~--n~~~L~~KI~qgd~--~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~  277 (375)
T KOG0591|consen  205 Y---NFKSDIWSLGCLLYEMCALQSPFYGD--NLLSLCKKIEQGDY--PPLPDEHYSTDLRELINMCIAVDPEQRPDTVP  277 (375)
T ss_pred             C---CcchhHHHHHHHHHHHHhcCCCcccc--cHHHHHHHHHcCCC--CCCcHHHhhhHHHHHHHHHccCCcccCCCcch
Confidence            6   99999999999999999999999864  66788899998843  44444568899999999999999999998644


Q ss_pred             HHHHH
Q psy1840         183 VHHKL  187 (423)
Q Consensus       183 I~~~L  187 (423)
                      ++..+
T Consensus       278 ~v~di  282 (375)
T KOG0591|consen  278 YVQDI  282 (375)
T ss_pred             HHHHH
Confidence            44433

>KOG0575|consensus

Probab=99.96  E-value=5.5e-29  Score=249.25  Aligned_cols=157  Identities=24%  Similarity=0.350  Sum_probs=137.7

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCc
Q psy1840          17 SPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPE   96 (423)
Q Consensus        17 ~~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE   96 (423)
                      .++.-|+ ...++.||+.||.|||+.+|| |||||..|++++.+.+|||+|||+|..+....+  ...+.+||+.|.|||
T Consensus       113 k~ltEpE-ary~l~QIv~GlkYLH~~~Ii-HRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E--rk~TlCGTPNYIAPE  188 (592)
T KOG0575|consen  113 KPLTEPE-ARYFLRQIVEGLKYLHSLGII-HRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE--RKKTLCGTPNYIAPE  188 (592)
T ss_pred             CCCCcHH-HHHHHHHHHHHHHHHHhcCce-ecccchhheeecCcCcEEecccceeeeecCccc--ccceecCCCcccChh
Confidence            4566666 468999999999999999988 999999999999999999999999987754433  336789999999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCC
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPEL  176 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~  176 (423)
                      ++.....   +..+||||+|||+|-|+.|++||.  ..+.++...+|+......|.    ..+.+..+||..+|+.||.+
T Consensus       189 Vl~k~gH---sfEvDiWSlGcvmYtLL~G~PPFe--tk~vkety~~Ik~~~Y~~P~----~ls~~A~dLI~~lL~~~P~~  259 (592)
T KOG0575|consen  189 VLNKSGH---SFEVDIWSLGCVMYTLLVGRPPFE--TKTVKETYNKIKLNEYSMPS----HLSAEAKDLIRKLLRPNPSE  259 (592)
T ss_pred             HhccCCC---CCchhhhhhhhHHHhhhhCCCCcc--cchHHHHHHHHHhcCccccc----ccCHHHHHHHHHHhcCCccc
Confidence            9987655   899999999999999999999997  34568889999988877775    57889999999999999999


Q ss_pred             CCCHHHHHHH
Q psy1840         177 RPDLRFVHHK  186 (423)
Q Consensus       177 RPt~~~I~~~  186 (423)
                      |||+++|+..
T Consensus       260 Rpsl~~vL~h  269 (592)
T KOG0575|consen  260 RPSLDEVLDH  269 (592)
T ss_pred             CCCHHHHhcC
Confidence            9999999875

>KOG4721|consensus

Probab=99.96  E-value=1.7e-29  Score=249.74  Aligned_cols=188  Identities=25%  Similarity=0.416  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      -+.|..+||.||.|||.++|| |||||+-||||..+-.|||+|||.++.....   .....+.||..|||||++++... 
T Consensus       214 lv~Wsk~IA~GM~YLH~hKII-HRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~---STkMSFaGTVaWMAPEvIrnePc-  288 (904)
T KOG4721|consen  214 LVDWSKGIAGGMNYLHLHKII-HRDLKSPNILISYDDVVKISDFGTSKELSDK---STKMSFAGTVAWMAPEVIRNEPC-  288 (904)
T ss_pred             HHHHHHHhhhhhHHHHHhhHh-hhccCCCceEeeccceEEeccccchHhhhhh---hhhhhhhhhHhhhCHHHhhcCCc-
Confidence            478999999999999999998 9999999999999999999999998876433   33467899999999999999876 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.|+||||||||||||+||..||.+.  ....||.-+-......|  .+..||..+.-||++||+..|..||+|.+|+
T Consensus       289 --sEKVDIwSfGVVLWEmLT~EiPYkdV--dssAIIwGVGsNsL~Lp--vPstcP~GfklL~Kqcw~sKpRNRPSFrqil  362 (904)
T KOG4721|consen  289 --SEKVDIWSFGVVLWEMLTGEIPYKDV--DSSAIIWGVGSNSLHLP--VPSTCPDGFKLLLKQCWNSKPRNRPSFRQIL  362 (904)
T ss_pred             --ccccceehhHHHHHHHHhcCCCcccc--chheeEEeccCCccccc--CcccCchHHHHHHHHHHhcCCCCCccHHHHH
Confidence              99999999999999999999999743  23334444433322222  2347999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHHhhhcccccchhhHHhhccCCCCC
Q psy1840         185 HKLKEMNAGLKANIFDNMLAIMEKYAFNLEGEWTDWTASLRRRPKMG  231 (423)
Q Consensus       185 ~~L~~i~~~~~~~~~d~~~~~~e~~~~~lE~~~~~~~~~~~~~~~~~  231 (423)
                      ..|.-...        .++.+-|+--+...++|++.+...-...+..
T Consensus       363 ~HldIa~p--------ell~~tee~yf~sq~swrEevk~h~~~it~~  401 (904)
T KOG4721|consen  363 LHLDIASP--------ELLSTTEETYFKSQASWREEVKLHFEKITSE  401 (904)
T ss_pred             HHHhhcCH--------HHhcccHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            99865543        3344444433444455777666655554443

>KOG0615|consensus

Probab=99.96  E-value=1.3e-29  Score=242.99  Aligned_cols=156  Identities=22%  Similarity=0.286  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC---ccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~---~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .++.|++.|+.|||+.||+ ||||||+|||+..+   ..+||+|||+|++..   ......+.+||+.|.|||++.++..
T Consensus       280 ~~f~Qll~avkYLH~~GI~-HRDiKPeNILl~~~~e~~llKItDFGlAK~~g---~~sfm~TlCGTpsYvAPEVl~~kg~  355 (475)
T KOG0615|consen  280 LLFKQLLTAVKYLHSQGII-HRDIKPENILLSNDAEDCLLKITDFGLAKVSG---EGSFMKTLCGTPSYVAPEVLASKGV  355 (475)
T ss_pred             HHHHHHHHHHHHHHHcCcc-cccCCcceEEeccCCcceEEEecccchhhccc---cceehhhhcCCccccChhheecCCe
Confidence            5789999999999999999 99999999999766   889999999999864   2233467899999999999998775


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      ..+..++|+||+||++|-+++|..||.+. ..+..+.+++.+|....-+.....++++..+||..+|..||++||++.++
T Consensus       356 ~~~~~kVDiWSlGcvLfvcLsG~pPFS~~-~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~ea  434 (475)
T KOG0615|consen  356 EYYPSKVDIWSLGCVLFVCLSGYPPFSEE-YTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEA  434 (475)
T ss_pred             ecccchheeeeccceEEEEeccCCCcccc-cCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHH
Confidence            44467999999999999999999999753 33445788888887766555667899999999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++.-
T Consensus       435 L~hp  438 (475)
T KOG0615|consen  435 LNHP  438 (475)
T ss_pred             hcCh
Confidence            8754

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.96  E-value=3.3e-28  Score=252.17  Aligned_cols=153  Identities=22%  Similarity=0.383  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+|||++.++.+||+|||+++...............|++.|+|||++.+..+ 
T Consensus       145 ~~~i~~qll~aL~~lH~~~Ii-HrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~-  222 (496)
T PTZ00283        145 AGLLFIQVLLAVHHVHSKHMI-HRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPY-  222 (496)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCC-
Confidence            567899999999999999998 999999999999999999999999876543322222345678999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|+.||..  ....++...+..+...  . .+..+++++.+++.+||+.||.+||++.+++
T Consensus       223 --s~k~DVwSlGvilyeLltG~~Pf~~--~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~li~~~L~~dP~~RPs~~ell  295 (496)
T PTZ00283        223 --SKKADMFSLGVLLYELLTLKRPFDG--ENMEEVMHKTLAGRYD--P-LPPSISPEMQEIVTALLSSDPKRRPSSSKLL  295 (496)
T ss_pred             --CcHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHhcCCCC--C-CCCCCCHHHHHHHHHHcccChhhCcCHHHHH
Confidence              8999999999999999999999974  3445666665544321  1 2235789999999999999999999999987


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      ..
T Consensus       296 ~~  297 (496)
T PTZ00283        296 NM  297 (496)
T ss_pred             hC
Confidence            64

>KOG1026|consensus

Probab=99.95  E-value=2.1e-28  Score=253.47  Aligned_cols=163  Identities=26%  Similarity=0.503  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .+.+.|+.|||.||+||-++.++ ||||..+||||..+..|||+|||+++-.-..+.........-...|||||.+..+.
T Consensus       603 ~q~L~iA~QIAaGM~YLs~~~FV-HRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~k  681 (774)
T KOG1026|consen  603 SQFLHIATQIAAGMEYLSSHHFV-HRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGK  681 (774)
T ss_pred             HHHHHHHHHHHHHHHHHHhCccc-ccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCc
Confidence            44799999999999999999998 99999999999999999999999998654444433222223345699999999876


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   |.+||||||||+|||+++ |.-||.  +.+.+|+++.+.++....   .+.+||.++.+||..||+.+|.+||+|+
T Consensus       682 F---TteSDVWs~GVvLWEIFsyG~QPy~--glSn~EVIe~i~~g~lL~---~Pe~CP~~vY~LM~~CW~~~P~~RPsF~  753 (774)
T KOG1026|consen  682 F---TTESDVWSFGVVLWEIFSYGKQPYY--GLSNQEVIECIRAGQLLS---CPENCPTEVYSLMLECWNENPKRRPSFK  753 (774)
T ss_pred             c---cchhhhhhhhhhhhhhhccccCccc--ccchHHHHHHHHcCCccc---CCCCCCHHHHHHHHHHhhcCcccCCCHH
Confidence            6   999999999999999996 888987  567899999999987532   2458999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q psy1840         182 FVHHKLKEMNAGL  194 (423)
Q Consensus       182 ~I~~~L~~i~~~~  194 (423)
                      +|...|+......
T Consensus       754 eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  754 EIHSRLQAWAQAS  766 (774)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999887644

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.95  E-value=8e-28  Score=237.17  Aligned_cols=160  Identities=26%  Similarity=0.461  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       176 ~~~~~~qi~~aL~~LH~~~iv-HrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  253 (338)
T cd05102         176 LICYSFQVARGMEFLASRKCI-HRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVY-  253 (338)
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-CCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCC-
Confidence            578999999999999999988 999999999999999999999999875432222112223345678999999977655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..... ...+...+..+...++   +..+++.+.+++.+||+.||++|||+.+|
T Consensus       254 --~~~sDiwslG~il~el~~~g~~pf~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~dp~~RPs~~el  327 (338)
T cd05102         254 --TTQSDVWSFGVLLWEIFSLGASPYPGVQI-NEEFCQRLKDGTRMRA---PENATPEIYRIMLACWQGDPKERPTFSAL  327 (338)
T ss_pred             --CcccCHHHHHHHHHHHHhCCCCCCCCCCc-cHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              899999999999999997 9999975433 2344445544433222   23578899999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       328 ~~~l~~~~~  336 (338)
T cd05102         328 VEILGDLLQ  336 (338)
T ss_pred             HHHHHHHHh
Confidence            999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0582|consensus

Probab=99.95  E-value=2.5e-27  Score=229.30  Aligned_cols=165  Identities=22%  Similarity=0.296  Sum_probs=127.7

Q ss_pred             CCCChHHH-HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-ccc-ccccCCccccC
Q psy1840          18 PFNIPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQE-RKLRRRKLYKA   94 (423)
Q Consensus        18 ~~~~p~~~-l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~-~~~~gt~~y~A   94 (423)
                      ||...+.. ..|+.++++||.|||++|.| |||||+.||||+++|.|||+|||.+..+...... ... ....|+++|||
T Consensus       120 ~~Gl~E~~Ia~iLre~LkaL~YLH~~G~I-HRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmA  198 (516)
T KOG0582|consen  120 PDGLEEASIATILREVLKALDYLHQNGHI-HRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMA  198 (516)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhcCce-ecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccC
Confidence            45555554 36789999999999999999 9999999999999999999999997765443321 112 56689999999


Q ss_pred             CccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCC------CCCchHHHHHHHHH
Q psy1840          95 PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS------SLDCAPSIIACMRT  168 (423)
Q Consensus        95 PE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~------~~~~~~~l~~Li~~  168 (423)
                      ||++..... -|+.|+|||||||+..|+.+|..||..  +.+-.++-.-.++.+..+...      ...++.++++++..
T Consensus       199 PEvl~q~~~-GYdfKaDIwSfGITA~ELA~G~aPf~k--~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~  275 (516)
T KOG0582|consen  199 PEVLMQQLH-GYDFKADIWSFGITACELAHGHAPFSK--YPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIAL  275 (516)
T ss_pred             hHHhhhccc-CccchhhhhhhhHHHHHHhcCCCCccc--CChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHH
Confidence            999655432 459999999999999999999999974  444444444344444332221      24567789999999


Q ss_pred             hhhcCCCCCCCHHHHHHH
Q psy1840         169 CWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       169 C~~~dP~~RPt~~~I~~~  186 (423)
                      |+++||.+|||++++++.
T Consensus       276 CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  276 CLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             HhhcCcccCCCHHHHhcc
Confidence            999999999999998764

>KOG0198|consensus

Probab=99.95  E-value=6e-28  Score=232.11  Aligned_cols=161  Identities=21%  Similarity=0.400  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccC-CCcccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAG-QDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~-~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...+..||++||+|||++|++ ||||||+|||++. ++.+||+|||+++.... ...........||+.|||||++..+.
T Consensus       119 v~~ytr~iL~GL~ylHs~g~v-H~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~  197 (313)
T KOG0198|consen  119 VRRYTRQILEGLAYLHSKGIV-HCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGE  197 (313)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-ccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCC
Confidence            358899999999999999998 9999999999999 79999999999886653 11122234578999999999998632


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      .  ...++|||||||++.||+||+.||... ....+.+-.+.... ..|.. +..++.+..+++..|+..||++|||+.+
T Consensus       198 ~--~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~~~~~~~~~ig~~~-~~P~i-p~~ls~~a~~Fl~~C~~~~p~~Rpta~e  272 (313)
T KOG0198|consen  198 V--ARRESDIWSLGCTVVEMLTGKPPWSEF-FEEAEALLLIGRED-SLPEI-PDSLSDEAKDFLRKCFKRDPEKRPTAEE  272 (313)
T ss_pred             c--CCccchhhhcCCEEEeccCCCCcchhh-cchHHHHHHHhccC-CCCCC-CcccCHHHHHHHHHHhhcCcccCcCHHH
Confidence            1  135999999999999999999999753 22223233333222 23333 3468999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy1840         183 VHHKLKEMN  191 (423)
Q Consensus       183 I~~~L~~i~  191 (423)
                      ++.......
T Consensus       273 LL~hpf~~~  281 (313)
T KOG0198|consen  273 LLEHPFLKQ  281 (313)
T ss_pred             HhhChhhhc
Confidence            988764433

>PHA02988 hypothetical protein; Provisional

Probab=99.95  E-value=4.5e-27  Score=226.54  Aligned_cols=156  Identities=22%  Similarity=0.338  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      +++++.|++.||.|||+. +++ ||||||+||+++.++.+||+|||+++......     ....++..|+|||++.+.. 
T Consensus       124 ~~~i~~~i~~~l~~lH~~~~~~-Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~-  196 (283)
T PHA02988        124 KLDMAIDCCKGLYNLYKYTNKP-YKNLTSVSFLVTENYKLKIICHGLEKILSSPP-----FKNVNFMVYFSYKMLNDIF-  196 (283)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-CCcCChhhEEECCCCcEEEcccchHhhhcccc-----ccccCcccccCHHHhhhcc-
Confidence            689999999999999985 777 99999999999999999999999987543221     2345778899999987621 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      ..++.++|||||||++|||++|+.||..  .+..++...+..+.. ++..+ ..+++.+.+++.+||+.||++|||+.++
T Consensus       197 ~~~~~k~Di~SlGvil~el~~g~~Pf~~--~~~~~~~~~i~~~~~-~~~~~-~~~~~~l~~li~~cl~~dp~~Rps~~el  272 (283)
T PHA02988        197 SEYTIKDDIYSLGVVLWEIFTGKIPFEN--LTTKEIYDLIINKNN-SLKLP-LDCPLEIKCIVEACTSHDSIKRPNIKEI  272 (283)
T ss_pred             ccccchhhhhHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcCC-CCCCC-CcCcHHHHHHHHHHhcCCcccCcCHHHH
Confidence            1348999999999999999999999974  345666666644322 22222 3578999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy1840         184 HHKLKEMN  191 (423)
Q Consensus       184 ~~~L~~i~  191 (423)
                      ++.|+.+.
T Consensus       273 l~~l~~~~  280 (283)
T PHA02988        273 LYNLSLYK  280 (283)
T ss_pred             HHHHHHHH
Confidence            99988764

>KOG0592|consensus

Probab=99.95  E-value=1.8e-27  Score=235.09  Aligned_cols=151  Identities=19%  Similarity=0.298  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-----------cccccccCCccccC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-----------GQERKLRRRKLYKA   94 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-----------~~~~~~~gt~~y~A   94 (423)
                      --.+.+|+.|++|||++||| ||||||+|||+|.++++||+|||-++.+......           .....+.||..|.+
T Consensus       177 R~YAAeIldAleylH~~GII-HRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVS  255 (604)
T KOG0592|consen  177 RFYAAEILDALEYLHSNGII-HRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVS  255 (604)
T ss_pred             HHHHHHHHHHHHHHHhcCce-eccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccC
Confidence            35789999999999999999 9999999999999999999999999876543221           11245889999999


Q ss_pred             CccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840          95 PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus        95 PE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      ||++.....   +..+|+|+||||+|.|+.|++||...  +.--+.++|.......|+    +.++.+.+|+++.|..||
T Consensus       256 PElL~~~~~---~~~sDiWAlGCilyQmlaG~PPFra~--NeyliFqkI~~l~y~fp~----~fp~~a~dLv~KLLv~dp  326 (604)
T KOG0592|consen  256 PELLNDSPA---GPSSDLWALGCILYQMLAGQPPFRAA--NEYLIFQKIQALDYEFPE----GFPEDARDLIKKLLVRDP  326 (604)
T ss_pred             HHHhcCCCC---CcccchHHHHHHHHHHhcCCCCCccc--cHHHHHHHHHHhcccCCC----CCCHHHHHHHHHHHccCc
Confidence            999998766   89999999999999999999999743  334456666665544443    567999999999999999


Q ss_pred             CCCCCHHHHHHH
Q psy1840         175 ELRPDLRFVHHK  186 (423)
Q Consensus       175 ~~RPt~~~I~~~  186 (423)
                      .+|+|..+|.++
T Consensus       327 ~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  327 SDRLTSQQIKAH  338 (604)
T ss_pred             cccccHHHHhhC
Confidence            999999998775

>KOG1095|consensus

Probab=99.95  E-value=1.8e-27  Score=254.64  Aligned_cols=166  Identities=28%  Similarity=0.494  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .+-+.|+.|||+|+.||+++++| ||||..+||||+.+.+|||+|||+|+-+.............-...|||||.+..+.
T Consensus       802 ~dLl~~a~dvA~G~~YLe~~~fv-HRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~i  880 (1025)
T KOG1095|consen  802 RDLLAFALDVAKGMNYLESKHFV-HRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGI  880 (1025)
T ss_pred             HHHHHHHHHHhhhhHHHHhCCCc-CcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcc
Confidence            44589999999999999999998 99999999999999999999999998443333322222222234599999999866


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.|+|||||||++||++| |..||++  .+..++...+..+....+   +..|+..+.++|.+||+.+|++||+|.
T Consensus       881 F---tskSDvWsFGVllWEifslG~~PY~~--~~n~~v~~~~~~ggRL~~---P~~CP~~ly~lM~~CW~~~pe~RP~F~  952 (1025)
T KOG1095|consen  881 F---TSKSDVWSFGVLLWEIFSLGATPYPS--RSNFEVLLDVLEGGRLDP---PSYCPEKLYQLMLQCWKHDPEDRPSFR  952 (1025)
T ss_pred             c---ccccchhhhHHHHHHHHhCCCCCCCC--cchHHHHHHHHhCCccCC---CCCCChHHHHHHHHHccCChhhCccHH
Confidence            5   999999999999999998 6789974  556777776666553333   247999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCC
Q psy1840         182 FVHHKLKEMNAGLKAN  197 (423)
Q Consensus       182 ~I~~~L~~i~~~~~~~  197 (423)
                      .|++.+..+.......
T Consensus       953 ~i~~q~~~i~~~~~~~  968 (1025)
T KOG1095|consen  953 TIVEQDPAISNAALGT  968 (1025)
T ss_pred             HHHhhhhhhhhhhccC
Confidence            9999887776654433

>KOG0598|consensus

Probab=99.95  E-value=2e-27  Score=225.96  Aligned_cols=140  Identities=21%  Similarity=0.307  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCCC
Q psy1840          28 VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGT  107 (423)
Q Consensus        28 i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~s  107 (423)
                      .+..|+.||.|||++||| ||||||+|||+|.+|+++|+|||+++......  ..+.+++||+.|||||++.+..+   +
T Consensus       130 YlaEi~lAL~~LH~~gIi-yRDlKPENILLd~~GHi~LtDFgL~k~~~~~~--~~t~tfcGT~eYmAPEil~~~gy---~  203 (357)
T KOG0598|consen  130 YLAEIVLALGYLHSKGII-YRDLKPENILLDEQGHIKLTDFGLCKEDLKDG--DATRTFCGTPEYMAPEILLGKGY---D  203 (357)
T ss_pred             HHHHHHHHHHHHHhCCee-eccCCHHHeeecCCCcEEEeccccchhcccCC--CccccccCCccccChHHHhcCCC---C
Confidence            477999999999999999 99999999999999999999999998543332  23356899999999999998866   9


Q ss_pred             CccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         108 QKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       108 ~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      ..+|.||+|+++|||++|..||..  .+..++++.+..++...++   ...+.+.++++++.+..||++|.
T Consensus       204 ~~vDWWsLGillYeML~G~pPF~~--~~~~~~~~~I~~~k~~~~p---~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  204 KAVDWWSLGILLYEMLTGKPPFYA--EDVKKMYDKILKGKLPLPP---GYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             cccchHhHHHHHHHHhhCCCCCcC--ccHHHHHHHHhcCcCCCCC---ccCCHHHHHHHHHHhccCHHHhc
Confidence            999999999999999999999973  4557788888887632222   23678999999999999999995

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.95  E-value=5.3e-27  Score=224.88  Aligned_cols=156  Identities=26%  Similarity=0.492  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ ||||||+||++++++.+||+|||++................+++.|+|||.+.+..+ 
T Consensus       126 ~~~~~~~l~~al~~lH~~~i~-H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  203 (283)
T cd05048         126 FLHIAIQIAAGMEYLSSHHFV-HRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKF-  203 (283)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcC-
Confidence            578999999999999999987 999999999999999999999999875433222222233455678999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||.+  ....++...+..+...  . .+..++.++.+|+.+||+.||.+||++.+|
T Consensus       204 --~~~sDv~slG~il~el~~~g~~p~~~--~~~~~~~~~i~~~~~~--~-~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i  276 (283)
T cd05048         204 --TTESDIWSFGVVLWEIFSYGLQPYYG--FSNQEVIEMIRSRQLL--P-CPEDCPARVYALMIECWNEIPARRPRFKDI  276 (283)
T ss_pred             --chhhhHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcCCcC--C-CcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              889999999999999998 9999874  3456677776654322  1 234689999999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|+.
T Consensus       277 ~~~l~~  282 (283)
T cd05048         277 HTRLRS  282 (283)
T ss_pred             HHHHhc
Confidence            998864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0201|consensus

Probab=99.94  E-value=1.6e-27  Score=230.40  Aligned_cols=175  Identities=18%  Similarity=0.375  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      .-++.++..|+.|||..+.+ |||||+.|||+..+|.+|++|||++..+......  ..++.||+.|||||++.+..|  
T Consensus       114 ~~ilre~l~~l~ylH~~~ki-HrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~r--r~tfvGTPfwMAPEVI~~~~Y--  188 (467)
T KOG0201|consen  114 AVILREVLKGLDYLHSEKKI-HRDIKAANILLSESGDVKLADFGVAGQLTNTVKR--RKTFVGTPFWMAPEVIKQSGY--  188 (467)
T ss_pred             eeehHHHHHHhhhhhhccee-cccccccceeEeccCcEEEEecceeeeeechhhc--cccccccccccchhhhccccc--
Confidence            45788999999999999998 9999999999999999999999998766433322  267899999999999997665  


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                       +.|+|||||||+.+||.+|.+|+...  .+..++..+..   ..|+.....+++.++++|..|+++||+.||++.++++
T Consensus       189 -~~KADIWSLGITaiEla~GePP~s~~--hPmrvlflIpk---~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  189 -DTKADIWSLGITAIELAKGEPPHSKL--HPMRVLFLIPK---SAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             -cchhhhhhhhHHHHHHhcCCCCCccc--CcceEEEeccC---CCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence             99999999999999999999999743  22222222222   2233333488999999999999999999999999987


Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHhhhc
Q psy1840         186 KLKEMNAGLKANIFDNMLAIMEKYAFN  212 (423)
Q Consensus       186 ~L~~i~~~~~~~~~d~~~~~~e~~~~~  212 (423)
                      . +.+....+.+.+.+++.+..+|-..
T Consensus       263 h-~FIk~a~k~s~L~~~i~r~~~~~~~  288 (467)
T KOG0201|consen  263 H-KFIKRAKKTSELKELIDRYKRWRVK  288 (467)
T ss_pred             h-HHHHhcCCchHHHHHHHHHHHHhhc
Confidence            5 5566677788888999988888765

>KOG0578|consensus

Probab=99.94  E-value=3.7e-27  Score=234.37  Aligned_cols=152  Identities=18%  Similarity=0.318  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      ..++.++++||+|||.+||+ |||||++|||++.+|.+||+|||++..+.....  ...+..||+.|||||++....|  
T Consensus       372 A~Icre~l~aL~fLH~~gIi-HrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~--KR~TmVGTPYWMAPEVvtrk~Y--  446 (550)
T KOG0578|consen  372 AAICREILQGLKFLHARGII-HRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS--KRSTMVGTPYWMAPEVVTRKPY--  446 (550)
T ss_pred             HHHHHHHHHHHHHHHhccee-eeccccceeEeccCCcEEEeeeeeeeccccccC--ccccccCCCCccchhhhhhccc--
Confidence            58999999999999999999 999999999999999999999999876654332  3467889999999999988766  


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                       +.|+||||||++.+||+-|++||..  ..+-.-+..+......... .....++.+.+++.+||+.|+++|+++.++++
T Consensus       447 -G~KVDIWSLGIMaIEMveGEPPYln--E~PlrAlyLIa~ng~P~lk-~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  447 -GPKVDIWSLGIMAIEMVEGEPPYLN--ENPLRALYLIATNGTPKLK-NPEKLSPELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             -CccccchhhhhHHHHHhcCCCCccC--CChHHHHHHHhhcCCCCcC-CccccCHHHHHHHHHHhhcchhcCCCHHHHhc
Confidence             9999999999999999999999963  3344444455443222111 23468999999999999999999999999987


Q ss_pred             H
Q psy1840         186 K  186 (423)
Q Consensus       186 ~  186 (423)
                      +
T Consensus       523 H  523 (550)
T KOG0578|consen  523 H  523 (550)
T ss_pred             C
Confidence            5

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.94  E-value=2.3e-26  Score=220.69  Aligned_cols=156  Identities=23%  Similarity=0.429  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||++|++ ||||||+||+++.++.+||+|||+++...............+++.|+|||.+.+..+ 
T Consensus       126 ~~~~~~ql~~aL~~lH~~gi~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  203 (283)
T cd05091         126 FVHIVTQIAAGMEFLSSHHVV-HKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKF-  203 (283)
T ss_pred             HHHHHHHHHHHHHHHHHcCcc-ccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCC-
Confidence            578999999999999999998 999999999999999999999999876533322222223345678999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....++.+.+..+....   ....++..+.+++.+||+.+|++||++.+|
T Consensus       204 --~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~~~i~~~~~~~---~~~~~~~~~~~li~~cl~~~p~~RP~~~~i  276 (283)
T cd05091         204 --SIDSDIWSYGVVLWEVFSYGLQPYCG--YSNQDVIEMIRNRQVLP---CPDDCPAWVYTLMLECWNEFPSRRPRFKDI  276 (283)
T ss_pred             --CcchhHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcCCcCC---CCCCCCHHHHHHHHHHhCCCcccCCCHHHH
Confidence              889999999999999998 7788864  34566777776654321   234688999999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      +..|+.
T Consensus       277 ~~~l~~  282 (283)
T cd05091         277 HSRLRT  282 (283)
T ss_pred             HHHhhC
Confidence            988763

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.94  E-value=4.2e-26  Score=218.87  Aligned_cols=161  Identities=22%  Similarity=0.401  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+++++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       111 ~~~i~~qi~~~l~~lH~~~ii-H~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~-  188 (279)
T cd05111         111 LLNWCVQIAKGMYYLEEHRMV-HRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRY-  188 (279)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCc-
Confidence            678999999999999999987 999999999999999999999999876533322222233456678999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||.+.  ...++...+..+....   ....++..+..++.+||..+|++||++.++
T Consensus       189 --~~~~Dv~slG~il~el~t~g~~p~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~c~~~~p~~Rps~~el  261 (279)
T cd05111         189 --THQSDVWSYGVTVWEMMSYGAEPYAGM--RPHEVPDLLEKGERLA---QPQICTIDVYMVMVKCWMIDENVRPTFKEL  261 (279)
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHHCCCcCC---CCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence              899999999999999998 99999643  3344444454433221   123467889999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q psy1840         184 HHKLKEMNAGL  194 (423)
Q Consensus       184 ~~~L~~i~~~~  194 (423)
                      .+.|..+....
T Consensus       262 ~~~l~~~~~~~  272 (279)
T cd05111         262 ANEFTRMARDP  272 (279)
T ss_pred             HHHHHHHHhCC
Confidence            99888876543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.94  E-value=2.8e-26  Score=221.39  Aligned_cols=160  Identities=24%  Similarity=0.508  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.||+.|++|||+++++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       125 ~~~i~~~i~~al~~lH~~~i~-H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  202 (291)
T cd05094         125 MLHIASQIASGMVYLASQHFV-HRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKF-  202 (291)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCC-
Confidence            689999999999999999998 999999999999999999999999875433222112223445678999999887654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||..  ....+.++.+..+....   ....++..+.+++.+||+.+|++||++.+|
T Consensus       203 --~~~~Di~slG~il~el~t~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v  275 (291)
T cd05094         203 --TTESDVWSFGVILWEIFTYGKQPWFQ--LSNTEVIECITQGRVLE---RPRVCPKEVYDIMLGCWQREPQQRLNIKEI  275 (291)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHhCCCCCC---CCccCCHHHHHHHHHHcccChhhCcCHHHH
Confidence              889999999999999998 9999863  34455666665543222   123568899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      .+.|..+...
T Consensus       276 ~~~l~~~~~~  285 (291)
T cd05094         276 YKILHALGKA  285 (291)
T ss_pred             HHHHHHHHhh
Confidence            9999988653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.94  E-value=1.5e-26  Score=224.02  Aligned_cols=154  Identities=17%  Similarity=0.258  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-----cccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.|++.||.|||+.+++ ||||||+|||++.++.+||+|||+++........     .......||+.|+|||...
T Consensus       128 ~~~i~~qi~~~l~~lH~~~ii-HrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~  206 (294)
T PHA02882        128 IKNIMKDMLTTLEYIHEHGIS-HGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHN  206 (294)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhC
Confidence            468999999999999999998 9999999999999999999999998765322111     1112346899999999988


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChH-------HHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhc
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDE-------EIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEE  172 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~-------~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~  172 (423)
                      +..+   +.++|||||||++|||++|+.||........       +++..+..+..     ....++..+.+++..||..
T Consensus       207 ~~~~---~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  278 (294)
T PHA02882        207 GACV---TRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKI-----KIKNANKFIYDFIECVTKL  278 (294)
T ss_pred             CCCC---CcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhh-----ccCCCCHHHHHHHHHHHhC
Confidence            7665   8999999999999999999999976532221       22233332221     1235678999999999999


Q ss_pred             CCCCCCCHHHHHHHH
Q psy1840         173 DPELRPDLRFVHHKL  187 (423)
Q Consensus       173 dP~~RPt~~~I~~~L  187 (423)
                      +|++||++.+|.+.+
T Consensus       279 ~~~~rp~~~~l~~~~  293 (294)
T PHA02882        279 SYEEKPDYDALIKIF  293 (294)
T ss_pred             CCCCCCCHHHHHHhh
Confidence            999999999998765

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.94  E-value=5.9e-27  Score=222.59  Aligned_cols=156  Identities=33%  Similarity=0.599  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+++++.||+.||.|||+++++ ||||+++||++++++.+||+|||++....................|+|||.+.+..
T Consensus       103 ~~~~~i~~~i~~~l~~Lh~~~ii-H~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  181 (259)
T PF07714_consen  103 QQRLSIAIQIAEALSYLHSNNII-HGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGE  181 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEE-EST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSE
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34789999999999999999987 99999999999999999999999987653222222223344567799999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++||||||+++||+++ |+.||..  ....++...+..+....   ....++..+.+++.+||+.+|++||++.
T Consensus       182 ~---~~ksDVysfG~~l~ei~~~~~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~C~~~~p~~RPs~~  253 (259)
T PF07714_consen  182 Y---TKKSDVYSFGMLLYEILTLGKFPFSD--YDNEEIIEKLKQGQRLP---IPDNCPKDIYSLIQQCWSHDPEKRPSFQ  253 (259)
T ss_dssp             E---SHHHHHHHHHHHHHHHHTTSSGTTTT--SCHHHHHHHHHTTEETT---SBTTSBHHHHHHHHHHT-SSGGGS--HH
T ss_pred             c---cccccccccccccccccccccccccc--cccccccccccccccce---eccchhHHHHHHHHHHcCCChhhCcCHH
Confidence            4   899999999999999999 6789864  46677788876553322   2236899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         182 FVHHKL  187 (423)
Q Consensus       182 ~I~~~L  187 (423)
                      +|++.|
T Consensus       254 ~i~~~L  259 (259)
T PF07714_consen  254 EILQEL  259 (259)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            998875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.94  E-value=1.9e-26  Score=223.92  Aligned_cols=158  Identities=25%  Similarity=0.410  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       140 ~~~i~~~i~~al~~lH~~~iv-H~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  217 (304)
T cd05096         140 LLHVALQIASGMKYLSSLNFV-HRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKF-  217 (304)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCC-
Confidence            578999999999999999998 999999999999999999999999875433222112223345678999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhC--CCCCCCCCCChHHHHHHHhc----CCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGR--QGPWGHLRMTDEEIITSVTQ----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg--~~Pf~~~~~~~~~i~~~i~~----~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                        +.++||||||+++|||+++  ..||..  .+..+++..+..    .........+..++..+.+++.+||+.+|++||
T Consensus       218 --~~~~Dv~slG~~l~el~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP  293 (304)
T cd05096         218 --TTASDVWAFGVTLWEILMLCKEQPYGE--LTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERP  293 (304)
T ss_pred             --CchhhhHHHHHHHHHHHHccCCCCCCc--CCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCc
Confidence              8899999999999999974  567754  344444443321    111111111235788999999999999999999


Q ss_pred             CHHHHHHHHH
Q psy1840         179 DLRFVHHKLK  188 (423)
Q Consensus       179 t~~~I~~~L~  188 (423)
                      |+.+|.+.|+
T Consensus       294 s~~~i~~~l~  303 (304)
T cd05096         294 SFSDIHAFLT  303 (304)
T ss_pred             CHHHHHHHHh
Confidence            9999988775

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.94  E-value=4e-26  Score=217.37  Aligned_cols=157  Identities=28%  Similarity=0.471  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       114 ~~~~~~~i~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~-  191 (272)
T cd05075         114 LVKFMTDIASGMEYLSSKSFI-HRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVY-  191 (272)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCc-
Confidence            578999999999999999998 999999999999999999999999876533221111122345567999999887654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |+.||..  ....++...+..+.....   ...++..+.+++.+||+.+|++|||+.+|
T Consensus       192 --~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~l  264 (272)
T cd05075         192 --TTKSDVWSFGVTMWEIATRGQTPYPG--VENSEIYDYLRQGNRLKQ---PPDCLDGLYSLMSSCWLLNPKDRPSFETL  264 (272)
T ss_pred             --ChHHHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence              889999999999999999 7889864  345566666665543221   23578899999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      ++.|+.+
T Consensus       265 ~~~l~~~  271 (272)
T cd05075         265 RCELEKA  271 (272)
T ss_pred             HHHHHhh
Confidence            9988763

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0583|consensus

Probab=99.94  E-value=2.9e-26  Score=228.00  Aligned_cols=152  Identities=22%  Similarity=0.343  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-ccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..-.+..|++.|++|+|++|++ ||||||+|+|+|.+ +++||+|||++....  .......+.+|++.|+|||++.+..
T Consensus       121 ~ar~~F~Qlisav~y~H~~gi~-HRDLK~ENilld~~~~~~Kl~DFG~s~~~~--~~~~~l~t~cGsp~Y~aPEvl~~~~  197 (370)
T KOG0583|consen  121 EARKYFRQLISAVAYCHSRGIV-HRDLKPENILLDGNEGNLKLSDFGLSAISP--GEDGLLKTFCGSPAYAAPEVLSGKG  197 (370)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEe-eCCCCHHHEEecCCCCCEEEeccccccccC--CCCCcccCCCCCcccCCHHHhCCCC
Confidence            3568999999999999999998 99999999999999 999999999988763  1223346789999999999999866


Q ss_pred             -CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 -LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 -~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                       +  .+.++||||+||+||.|++|..||.+  .....+...+..+....|....   ++++..|+.+|+..||.+|+++.
T Consensus       198 ~Y--~g~~aDvWS~GViLy~ml~G~~PF~d--~~~~~l~~ki~~~~~~~p~~~~---S~~~~~Li~~mL~~~P~~R~t~~  270 (370)
T KOG0583|consen  198 TY--SGKAADVWSLGVILYVLLCGRLPFDD--SNVPNLYRKIRKGEFKIPSYLL---SPEARSLIEKMLVPDPSTRITLL  270 (370)
T ss_pred             Cc--CCchhhhhhhHHHHHHHHhCCCCCCC--ccHHHHHHHHhcCCccCCCCcC---CHHHHHHHHHHcCCCcccCCCHH
Confidence             4  36899999999999999999999985  4455667777776655554321   89999999999999999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      +|+.
T Consensus       271 ~i~~  274 (370)
T KOG0583|consen  271 EILE  274 (370)
T ss_pred             HHhh
Confidence            9984

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.94  E-value=4.5e-26  Score=222.68  Aligned_cols=160  Identities=21%  Similarity=0.399  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||+|||+.+++ ||||||+||+++.++.+||+|||+++................+..|+|||.+.+..+ 
T Consensus       111 ~~~~~~qi~~~L~~LH~~~ii-H~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~-  188 (316)
T cd05108         111 LLNWCVQIAKGMNYLEERRLV-HRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIY-  188 (316)
T ss_pred             HHHHHHHHHHHHHHHHhcCee-ccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCC-
Confidence            578999999999999999998 999999999999999999999999886543322211122334567999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||.+  ....++...+..+.. .| . ...++.++.+++.+||..+|++||++.++
T Consensus       189 --~~~~Di~slGv~l~el~t~g~~p~~~--~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~li~~cl~~~p~~Rps~~~l  261 (316)
T cd05108         189 --THQSDVWSYGVTVWELMTFGSKPYDG--IPASEISSILEKGER-LP-Q-PPICTIDVYMIMVKCWMIDADSRPKFREL  261 (316)
T ss_pred             --CchhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHhCCCC-CC-C-CCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              899999999999999997 8999964  334444444443321 12 1 23577899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      +..+..+...
T Consensus       262 ~~~l~~~~~~  271 (316)
T cd05108         262 IIEFSKMARD  271 (316)
T ss_pred             HHHHHHHHcC
Confidence            9988777543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.94  E-value=5.7e-26  Score=218.87  Aligned_cols=160  Identities=24%  Similarity=0.531  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||+|||++|++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       122 ~~~~~~ql~~aL~~lH~~~i~-H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  199 (288)
T cd05093         122 MLHIAQQIAAGMVYLASQHFV-HRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKF-  199 (288)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCC-
Confidence            678999999999999999987 999999999999999999999999875432222111223345677999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|+|++ |..||..  ....+....+..+....   ....++.++.+++.+||+.||.+|||+.++
T Consensus       200 --~~~sDiwslG~il~~l~t~g~~p~~~--~~~~~~~~~i~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v  272 (288)
T cd05093         200 --TTESDVWSLGVVLWEIFTYGKQPWYQ--LSNNEVIECITQGRVLQ---RPRTCPKEVYDLMLGCWQREPHMRLNIKEI  272 (288)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCcCC---CCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence              889999999999999998 8889864  34456666766654322   123578899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ...|+.+...
T Consensus       273 ~~~l~~~~~~  282 (288)
T cd05093         273 HSLLQNLAKA  282 (288)
T ss_pred             HHHHHHHHHh
Confidence            9999888754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0983|consensus

Probab=99.94  E-value=3.9e-26  Score=208.79  Aligned_cols=153  Identities=23%  Similarity=0.414  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      ++...+++||.||..+ ++| |||+||+|||+|.+|++|+||||++..+.+....   ....|.+.|||||.+.-...+.
T Consensus       195 k~tva~v~AL~YLKeKH~vi-HRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAh---trsAGC~~YMaPERidp~~~~k  270 (391)
T KOG0983|consen  195 KMTVAIVKALYYLKEKHGVI-HRDVKPSNILLDERGNIKLCDFGISGRLVDSKAH---TRSAGCAAYMAPERIDPPDKPK  270 (391)
T ss_pred             hhHHHHHHHHHHHHHhccee-ecccCccceEEccCCCEEeecccccceeeccccc---ccccCCccccCccccCCCCCCc
Confidence            6778889999999876 666 9999999999999999999999998876544332   3456788999999998776667


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCC-CCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSS-LDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~-~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      +.-.+|||||||.++|+.||+.||.+... +-+.+..+.+..+  |.++. ..+++.+.+++..||..|+.+||...+++
T Consensus       271 YDiRaDVWSlGITlveLaTg~yPy~~c~t-dFe~ltkvln~eP--P~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll  347 (391)
T KOG0983|consen  271 YDIRADVWSLGITLVELATGQYPYKGCKT-DFEVLTKVLNEEP--PLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLL  347 (391)
T ss_pred             cchhhhhhhhccchhhhhcccCCCCCCCc-cHHHHHHHHhcCC--CCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHh
Confidence            79999999999999999999999987544 4566666666433  33332 34899999999999999999999999887


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      ++
T Consensus       348 ~h  349 (391)
T KOG0983|consen  348 EH  349 (391)
T ss_pred             cC
Confidence            64

>KOG0588|consensus

Probab=99.94  E-value=2.4e-26  Score=231.49  Aligned_cols=151  Identities=20%  Similarity=0.289  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+++..||+.|+.|+|..+|+ ||||||+|+|||.++.+||+|||+|..-.   ......+.||++.|.|||++.|..| 
T Consensus       114 aa~ff~QIi~gv~yCH~~~ic-HRDLKpENlLLd~~~nIKIADFGMAsLe~---~gklLeTSCGSPHYA~PEIV~G~pY-  188 (786)
T KOG0588|consen  114 AAHFFRQILDGVSYCHAFNIC-HRDLKPENLLLDVKNNIKIADFGMASLEV---PGKLLETSCGSPHYAAPEIVSGRPY-  188 (786)
T ss_pred             HHHHHHHHHHHHHHHhhhcce-eccCCchhhhhhcccCEeeeccceeeccc---CCccccccCCCcccCCchhhcCCCC-
Confidence            689999999999999999998 99999999999999999999999987532   2233456799999999999999876 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                       .+.++||||.|||||.|++|..||++  .+...++.++++|....|    ..++++.++|+.+|+..||+.|.|+.+|+
T Consensus       189 -dG~~sDVWSCGVILfALLtG~LPFdD--dNir~LLlKV~~G~f~MP----s~Is~eaQdLLr~ml~VDp~~RiT~~eI~  261 (786)
T KOG0588|consen  189 -DGRPSDVWSCGVILFALLTGKLPFDD--DNIRVLLLKVQRGVFEMP----SNISSEAQDLLRRMLDVDPSTRITTEEIL  261 (786)
T ss_pred             -CCCccccchhHHHHHHHHhCCCCCCC--ccHHHHHHHHHcCcccCC----CcCCHHHHHHHHHHhccCccccccHHHHh
Confidence             48999999999999999999999984  456889999999987776    36889999999999999999999999998


Q ss_pred             HHH
Q psy1840         185 HKL  187 (423)
Q Consensus       185 ~~L  187 (423)
                      ++.
T Consensus       262 kHP  264 (786)
T KOG0588|consen  262 KHP  264 (786)
T ss_pred             hCc
Confidence            764

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.94  E-value=4.6e-26  Score=216.33  Aligned_cols=159  Identities=23%  Similarity=0.418  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+++++ ||||||+||+++.++.++|+|||++........  ......++..|+|||.+.+... 
T Consensus       108 ~~~~~~~i~~~l~~LH~~~i~-H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~-  183 (267)
T cd08228         108 VWKYFVQLCSAVEHMHSRRVM-HRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERIHENGY-  183 (267)
T ss_pred             HHHHHHHHHHHHHHHhhCCee-CCCCCHHHEEEcCCCCEEECccccceeccchhH--HHhcCCCCccccChhhhccCCC-
Confidence            578999999999999999998 999999999999999999999999876532221  1123457788999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|||++|..||.....+...+...+....  .|......++..+.+++.+||+.+|++||++.+|+
T Consensus       184 --~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl  259 (267)
T cd08228         184 --NFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCD--YPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVH  259 (267)
T ss_pred             --CchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCC--CCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHH
Confidence              78999999999999999999999765555556666655432  23333345778999999999999999999999999


Q ss_pred             HHHHHHh
Q psy1840         185 HKLKEMN  191 (423)
Q Consensus       185 ~~L~~i~  191 (423)
                      +.++.+.
T Consensus       260 ~~~~~~~  266 (267)
T cd08228         260 QIAKQMH  266 (267)
T ss_pred             HHHHHhc
Confidence            9998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.93  E-value=8.5e-26  Score=216.38  Aligned_cols=160  Identities=23%  Similarity=0.388  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||||+||++++++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       111 ~~~~~~qi~~~L~~lH~~~ii-H~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~-  188 (279)
T cd05109         111 LLNWCVQIAKGMSYLEEVRLV-HRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRF-  188 (279)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCC-
Confidence            688999999999999999988 999999999999999999999999876543222111122234567999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++||+++ |..||..  .....+...+..+....  . ...++.++.+++.+||+.||++||++.++
T Consensus       189 --~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~li~~~l~~dp~~Rp~~~~l  261 (279)
T cd05109         189 --THQSDVWSYGVTVWELMTFGAKPYDG--IPAREIPDLLEKGERLP--Q-PPICTIDVYMIMVKCWMIDSECRPRFREL  261 (279)
T ss_pred             --CchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHCCCcCC--C-CccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999998 8889864  23444555554433221  1 23578899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ++.|..+...
T Consensus       262 ~~~l~~~~~~  271 (279)
T cd05109         262 VDEFSRMARD  271 (279)
T ss_pred             HHHHHHhhcC
Confidence            9988877553

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.93  E-value=1e-25  Score=214.37  Aligned_cols=157  Identities=27%  Similarity=0.474  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||||+||++++++.+||+|||+++................+..|+|||.+.+..+ 
T Consensus       115 ~~~~~~~i~~aL~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~-  192 (273)
T cd05035         115 LLKFMVDIALGMEYLSNRNFI-HRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVY-  192 (273)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCC-
Confidence            578999999999999999998 999999999999999999999999876533322111122234567999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||.+  ....++...+..+...  .. +..++.++.+++.+||+.||++||++.++
T Consensus       193 --~~~~Dv~SlG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~e~  265 (273)
T cd05035         193 --TSKSDVWAFGVTMWEIATRGQTPYPG--VENHEIYDYLRHGNRL--KQ-PEDCLDELYDLMYSCWRADPKDRPTFTKL  265 (273)
T ss_pred             --CcccchHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCC--CC-CcCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999999 8888864  3445666666554322  12 23678999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      ++.|+.+
T Consensus       266 ~~~l~~~  272 (273)
T cd05035         266 REVLENI  272 (273)
T ss_pred             HHHHHhh
Confidence            9998765

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.93  E-value=6.3e-26  Score=227.33  Aligned_cols=158  Identities=22%  Similarity=0.406  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++...............++..|+|||++.+..+ 
T Consensus       214 ~~~i~~qi~~aL~yLH~~gii-HrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  291 (374)
T cd05106         214 LLRFSSQVAQGMDFLASKNCI-HRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVY-  291 (374)
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-eccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCC-
Confidence            578999999999999999998 999999999999999999999999875432221111122334567999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |+.||..... .......+..+.  .+. .+...++++.+++.+||+.||++||++.+|
T Consensus       292 --~~~~DvwSlGvil~ellt~G~~Pf~~~~~-~~~~~~~~~~~~--~~~-~~~~~~~~l~~li~~cl~~dp~~RPs~~~l  365 (374)
T cd05106         292 --TVQSDVWSYGILLWEIFSLGKSPYPGILV-NSKFYKMVKRGY--QMS-RPDFAPPEIYSIMKMCWNLEPTERPTFSQI  365 (374)
T ss_pred             --CccccHHHHHHHHHHHHhCCCCCCccccc-cHHHHHHHHccc--Ccc-CCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              899999999999999997 9999975322 222333333221  111 122467899999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      .+.|+++
T Consensus       366 ~~~l~~~  372 (374)
T cd05106         366 SQLIQRQ  372 (374)
T ss_pred             HHHHHHH
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.93  E-value=8.3e-26  Score=216.10  Aligned_cols=155  Identities=28%  Similarity=0.549  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||++|++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       124 ~~~~~~~i~~~l~~lH~~~i~-h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  201 (280)
T cd05049         124 LLQIAVQIASGMVYLASQHFV-HRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKF-  201 (280)
T ss_pred             HHHHHHHHHHHHHHHhhCCee-ccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCc-
Confidence            578999999999999999988 999999999999999999999999875432221111123344677999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....+....+..+....+   ...++..+.+++.+||+.||++||++.+|
T Consensus       202 --~~~~Di~slG~il~e~~~~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rp~~~ei  274 (280)
T cd05049         202 --TTESDVWSFGVVLWEIFTYGKQPWYG--LSNEEVIECITQGRLLQR---PRTCPSEVYDIMLGCWKRDPQQRINIKDI  274 (280)
T ss_pred             --chhhhHHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCcCCC---CCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence              889999999999999998 9999864  345566666665443222   23578999999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      ++.|+
T Consensus       275 l~~l~  279 (280)
T cd05049         275 HERLQ  279 (280)
T ss_pred             HHHhh
Confidence            98875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG0661|consensus

Probab=99.93  E-value=4.3e-26  Score=222.21  Aligned_cols=155  Identities=19%  Similarity=0.275  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...|+.||++||+|+|++|+. |||+||+|||+..+..+||+|||+|+........   +....|.+|.|||++....  
T Consensus       112 irnim~QilqGL~hiHk~GfF-HRDlKPENiLi~~~~~iKiaDFGLARev~SkpPY---TeYVSTRWYRAPEvLLrs~--  185 (538)
T KOG0661|consen  112 IRNIMYQILQGLAHIHKHGFF-HRDLKPENILISGNDVIKIADFGLAREVRSKPPY---TEYVSTRWYRAPEVLLRSG--  185 (538)
T ss_pred             HHHHHHHHHHHHHHHHhcCcc-cccCChhheEecccceeEecccccccccccCCCc---chhhhcccccchHHhhhcc--
Confidence            469999999999999999998 9999999999999999999999999977554433   4567889999999987654  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--C-----------------CCCCCCCC-------CCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--G-----------------SGLRPDTS-------SLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--~-----------------~~~~p~~~-------~~~~  158 (423)
                      .++.+.|+||+|||++|+.+-+.-|++...  -+.+.++..  |                 ....|...       ...+
T Consensus       186 ~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE--~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~  263 (538)
T KOG0661|consen  186 YYSSPVDMWAVGCIMAELYSLRPLFPGASE--IDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNA  263 (538)
T ss_pred             ccCCchHHHHHHHHHHHHHHhcccCCCCcH--HHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCccc
Confidence            359999999999999999999998986432  222222221  0                 01111111       1347


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHKL  187 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~L  187 (423)
                      +.+..++|.+|+++||++|||+.+.++.-
T Consensus       264 s~~~~~li~~ll~WDP~kRpTA~~al~~p  292 (538)
T KOG0661|consen  264 SSEAASLIERLLAWDPDKRPTASQALQHP  292 (538)
T ss_pred             CHHHHHHHHHHhcCCCccCccHHHHhcCc
Confidence            88999999999999999999999998753

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.93  E-value=1.2e-25  Score=222.11  Aligned_cols=160  Identities=27%  Similarity=0.439  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ..+++.||+.||+|||++|++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       175 ~~~~~~qi~~aL~~lH~~~iv-HrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  252 (337)
T cd05054         175 LISYSFQVARGMEFLASRKCI-HRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVY-  252 (337)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCC-
Confidence            678999999999999999998 999999999999999999999999876533222222233445677999999887655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++||+++ |..||.+... .+.+...+..+..  +.. ...+++++.+++.+||+.+|++||++.+|
T Consensus       253 --~~~~Di~SlGv~l~el~t~g~~p~~~~~~-~~~~~~~~~~~~~--~~~-~~~~~~~~~~l~~~cl~~~p~~RPs~~el  326 (337)
T cd05054         253 --TTQSDVWSFGVLLWEIFSLGASPYPGVQI-DEEFCRRLKEGTR--MRA-PEYATPEIYSIMLDCWHNNPEDRPTFSEL  326 (337)
T ss_pred             --CccccHHHHHHHHHHHHHcCCCCCCCCCc-cHHHHHHHhccCC--CCC-CccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              899999999999999997 9999975322 2233333433322  211 23567899999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       327 l~~l~~~~~  335 (337)
T cd05054         327 VEILGDLLQ  335 (337)
T ss_pred             HHHHHHHHh
Confidence            999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.93  E-value=4e-26  Score=219.76  Aligned_cols=152  Identities=21%  Similarity=0.250  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......   .......+++.|+|||.+.+..+ 
T Consensus       112 ~~~i~~qi~~aL~~lH~~~ii-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~-  186 (290)
T cd07862         112 IKDMMFQLLRGLDFLHSHRVV-HRDLKPQNILVTSSGQIKLADFGLARIYSFQ---MALTSVVVTLWYRAPEVLLQSSY-  186 (290)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eCCCCHHHEEEcCCCCEEEccccceEeccCC---cccccccccccccChHHHhCCCC-
Confidence            578999999999999999998 9999999999999999999999998754322   12234567889999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC-----C--------------CCC----CCCCchHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-----R--------------PDT----SSLDCAPS  161 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~-----~--------------p~~----~~~~~~~~  161 (423)
                        +.++|||||||++|||++|..||...  ...+.+..+......     .              +..    ....+++.
T Consensus       187 --~~~~DiwslG~il~el~~g~~~f~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (290)
T cd07862         187 --ATPVDLWSVGCIFAEMFRRKPLFRGS--SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDEL  262 (290)
T ss_pred             --CCccchHHHHHHHHHHHcCCCCcCCC--CHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHH
Confidence              88999999999999999999999743  233333333221000     0              000    01246778


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         162 IIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       162 l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +.+++.+||+.||++|||+.++++
T Consensus       263 ~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         263 GKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             HHHHHHHHhccCchhcCCHHHHhc
Confidence            899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.93  E-value=1.2e-25  Score=212.69  Aligned_cols=156  Identities=24%  Similarity=0.473  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-ccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.|++.||.|||++|++ ||||||.||+++.++.+||+|||++.......... ......++..|+|||.+.....
T Consensus        97 ~~~i~~qi~~al~~lH~~~i~-H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  175 (257)
T cd05116          97 ITELVHQVSMGMKYLEETNFV-HRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKF  175 (257)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCc
Confidence            679999999999999999987 99999999999999999999999987654332211 1112233567999999876544


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|+|||||++||+++ |..||..  ....++...+..+..  +.. +..+++++.++|.+||+.||++||++.+
T Consensus       176 ---~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~~~i~~~~~--~~~-~~~~~~~l~~li~~~~~~~p~~Rp~~~~  247 (257)
T cd05116         176 ---SSKSDVWSFGVLMWEAFSYGQKPYKG--MKGNEVTQMIESGER--MEC-PQRCPPEMYDLMKLCWTYGVDERPGFAV  247 (257)
T ss_pred             ---CchhHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHCCCC--CCC-CCCCCHHHHHHHHHHhccCchhCcCHHH
Confidence               789999999999999998 9999974  345667777765432  222 2357899999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         183 VHHKLKE  189 (423)
Q Consensus       183 I~~~L~~  189 (423)
                      |.+.|+.
T Consensus       248 i~~~l~~  254 (257)
T cd05116         248 VELRLRN  254 (257)
T ss_pred             HHHHHhc
Confidence            9988865

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.93  E-value=2e-25  Score=216.80  Aligned_cols=159  Identities=27%  Similarity=0.469  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       139 ~~~~~~qi~~al~~LH~~giv-H~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  216 (304)
T cd05101         139 LVSCTYQVARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVY-  216 (304)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCC-
Confidence            578999999999999999998 999999999999999999999999876543222222223345567999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|++++ |..||..  .+..++...+..+...  . ....++..+.+++.+||+.+|++||++.+|
T Consensus       217 --~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~li~~cl~~~p~~Rps~~e~  289 (304)
T cd05101         217 --THQSDVWSFGVLMWEIFTLGGSPYPG--IPVEELFKLLKEGHRM--D-KPANCTNELYMMMRDCWHAIPSHRPTFKQL  289 (304)
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHHcCCcC--C-CCCCCCHHHHHHHHHHcccChhhCCCHHHH
Confidence              889999999999999998 7788863  4556677666554322  1 223678999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+++..
T Consensus       290 l~~l~~~~~  298 (304)
T cd05101         290 VEDLDRILT  298 (304)
T ss_pred             HHHHHHHHH
Confidence            999988764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.93  E-value=2.3e-25  Score=211.60  Aligned_cols=156  Identities=27%  Similarity=0.536  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++......... .......+..|+|||.+.+... 
T Consensus       106 ~~~~~~ql~~~l~~lH~~~i~-H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~-  182 (263)
T cd05052         106 LLYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESLAYNKF-  182 (263)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-ecccCcceEEEcCCCcEEeCCCccccccccceee-ccCCCCCccccCCHHHhccCCC-
Confidence            678999999999999999988 9999999999999999999999998765432211 1112233457999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||.+.  ...+....+..+.  .+. ....++.++.+++.+||+.+|++||++.++
T Consensus       183 --~~~~Dv~slG~il~el~t~g~~p~~~~--~~~~~~~~~~~~~--~~~-~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l  255 (263)
T cd05052         183 --SIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEKGY--RME-RPEGCPPKVYELMRACWQWNPSDRPSFAEI  255 (263)
T ss_pred             --CchhHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHHCCC--CCC-CCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence              889999999999999998 88998743  4455555555432  222 234678999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      .+.|+.+
T Consensus       256 ~~~l~~~  262 (263)
T cd05052         256 HQAFETM  262 (263)
T ss_pred             HHHHHhh
Confidence            9988764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0599|consensus

Probab=99.93  E-value=3.1e-26  Score=209.33  Aligned_cols=155  Identities=19%  Similarity=0.307  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC---C
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP---H  102 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~---~  102 (423)
                      -+|+.|+..|++|||.++|+ ||||||+|||+|++.++||+|||++..+....   .....+||+.|+|||.+...   .
T Consensus       126 R~iMrqlfegVeylHa~~IV-HRDLKpENILlddn~~i~isDFGFa~~l~~Ge---kLrelCGTPgYLAPEtikC~m~e~  201 (411)
T KOG0599|consen  126 RRIMRQLFEGVEYLHARNIV-HRDLKPENILLDDNMNIKISDFGFACQLEPGE---KLRELCGTPGYLAPETIKCSMYEN  201 (411)
T ss_pred             HHHHHHHHHHHHHHHHhhhh-hcccChhheeeccccceEEeccceeeccCCch---hHHHhcCCCcccChhheeeecccC
Confidence            58999999999999999998 99999999999999999999999988765333   33568999999999999742   2


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      .+-++...|+||.|+|+|-++.|..||.+..  .--.+..+..|+.........+++....+||.+|++.||.+|.|..+
T Consensus       202 ~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRk--QmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake  279 (411)
T KOG0599|consen  202 HPGYSKEVDEWACGVIMYTLLAGCPPFWHRK--QMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKE  279 (411)
T ss_pred             CCCccchhhHHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHH
Confidence            3356899999999999999999999997531  12245667778776666667789999999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      ++..
T Consensus       280 ~LaH  283 (411)
T KOG0599|consen  280 ALAH  283 (411)
T ss_pred             HhcC
Confidence            8764

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.93  E-value=1.3e-25  Score=214.86  Aligned_cols=155  Identities=26%  Similarity=0.511  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       121 ~~~~~~~l~~~l~~lH~~~~v-H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  198 (277)
T cd05062         121 MIQMAGEIADGMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVF-  198 (277)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCc-
Confidence            578999999999999999988 999999999999999999999999875432222111122344667999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....+....+..+....   ....++..+.+++.+||+.+|++||++.++
T Consensus       199 --~~~~Di~slG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~e~  271 (277)
T cd05062         199 --TTYSDVWSFGVVLWEIATLAEQPYQG--MSNEQVLRFVMEGGLLD---KPDNCPDMLFELMRMCWQYNPKMRPSFLEI  271 (277)
T ss_pred             --CchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcCCcCC---CCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999998 6888864  34455665555443221   123578899999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      ++.|+
T Consensus       272 l~~l~  276 (277)
T cd05062         272 ISSIK  276 (277)
T ss_pred             HHHhh
Confidence            88764

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.93  E-value=1.4e-25  Score=216.19  Aligned_cols=157  Identities=29%  Similarity=0.479  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       134 ~~~i~~qi~~al~~LH~~~iv-H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  211 (293)
T cd05053         134 LVSFAYQVARGMEFLASKKCI-HRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVY-  211 (293)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCc-
Confidence            678999999999999999998 999999999999999999999999876543322222222334567999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++||+++ |..||..  ....+....+..+..  +. .+..++..+.+++.+||..+|++|||+.++
T Consensus       212 --~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~ei  284 (293)
T cd05053         212 --THQSDVWSFGVLLWEIFTLGGSPYPG--IPVEELFKLLKEGYR--ME-KPQNCTQELYHLMRDCWHEVPSQRPTFKQL  284 (293)
T ss_pred             --CcccceeehhhHHHHHhcCCCCCCCC--CCHHHHHHHHHcCCc--CC-CCCCCCHHHHHHHHHHcccCcccCcCHHHH
Confidence              889999999999999997 8889864  344555555554322  11 123578899999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      ++.|..+
T Consensus       285 l~~l~~~  291 (293)
T cd05053         285 VEDLDRM  291 (293)
T ss_pred             HHHHHHh
Confidence            9998765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.93  E-value=1.9e-25  Score=223.95  Aligned_cols=157  Identities=23%  Similarity=0.415  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       216 ~~~~~~qi~~~l~~lH~~~iv-H~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  293 (375)
T cd05104         216 LLSFSYQVAKGMSFLASKNCI-HRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVY-  293 (375)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCC-
Confidence            679999999999999999988 999999999999999999999999875533222111122334567999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||.... ....+...+..+.  ++.. +...+.++.+++.+||+.||++||++.+|
T Consensus       294 --~~~sDi~slG~~l~ellt~g~~p~~~~~-~~~~~~~~~~~~~--~~~~-~~~~~~~l~~li~~cl~~dP~~RPs~~ei  367 (375)
T cd05104         294 --TFESDVWSYGILLWEIFSLGSSPYPGMP-VDSKFYKMIKEGY--RMLS-PECAPSEMYDIMKSCWDADPLKRPTFKQI  367 (375)
T ss_pred             --CCCCCHHHHHHHHHHHHhcCCCCCCCCC-chHHHHHHHHhCc--cCCC-CCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence              899999999999999998 888986432 2234444444432  1111 22457899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      ++.|++
T Consensus       368 l~~l~~  373 (375)
T cd05104         368 VQLIEQ  373 (375)
T ss_pred             HHHHHh
Confidence            998875

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0585|consensus

Probab=99.93  E-value=5.2e-26  Score=221.49  Aligned_cols=161  Identities=20%  Similarity=0.259  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc---ccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE---TGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~---~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      +-+++.+++.||+|||.+||| ||||||+|+||+++|++||+|||.+........   ........||+.|+|||.+.++
T Consensus       212 Ar~ylrDvv~GLEYLH~Qgii-HRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~  290 (576)
T KOG0585|consen  212 ARKYLRDVVLGLEYLHYQGII-HRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGG  290 (576)
T ss_pred             HHHHHHHHHHHHHHHHhcCee-ccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCC
Confidence            568999999999999999999 999999999999999999999999876532211   1222346899999999999874


Q ss_pred             C-CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         102 H-LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       102 ~-~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      . ....+.+.||||+||+||.++.|+.||.+  ...-++..+|...+...|..+  +..+.+.+||+++|++||++|.++
T Consensus       291 ~~~~~~g~a~DiWalGVTLYCllfG~~PF~~--~~~~~l~~KIvn~pL~fP~~p--e~~e~~kDli~~lL~KdP~~Ri~l  366 (576)
T KOG0585|consen  291 NSFSYSGFALDIWALGVTLYCLLFGQLPFFD--DFELELFDKIVNDPLEFPENP--EINEDLKDLIKRLLEKDPEQRITL  366 (576)
T ss_pred             CCccccchhhhhhhhhhhHHHhhhccCCccc--chHHHHHHHHhcCcccCCCcc--cccHHHHHHHHHHhhcChhheeeh
Confidence            4 33457899999999999999999999963  344667778877665555543  467899999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy1840         181 RFVHHKLKEM  190 (423)
Q Consensus       181 ~~I~~~L~~i  190 (423)
                      .+|.....--
T Consensus       367 ~~ik~Hpwvt  376 (576)
T KOG0585|consen  367 PDIKLHPWVT  376 (576)
T ss_pred             hhheecceec
Confidence            9998766443

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.93  E-value=6.6e-26  Score=218.28  Aligned_cols=150  Identities=23%  Similarity=0.310  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||+|||+.+++ ||||||+||+++.++.+||+|||++.......   ......|+..|+|||.+.+..+ 
T Consensus       104 ~~~~~~qi~~~l~~lH~~~ii-H~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~-  178 (285)
T cd05631         104 AIFYAAELCCGLEDLQRERIV-YRDLKPENILLDDRGHIRISDLGLAVQIPEGE---TVRGRVGTVGYMAPEVINNEKY-  178 (285)
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-eCCCCHHHEEECCCCCEEEeeCCCcEEcCCCC---eecCCCCCCCccCHhhhcCCCC-
Confidence            578899999999999999998 99999999999999999999999987643221   1134468899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCC--hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC---
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD---  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt---  179 (423)
                        +.++|||||||++|||++|+.||......  ...+...+.....    .....+++.+.+|+.+||+.||++||+   
T Consensus       179 --~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05631         179 --TFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQE----EYSEKFSEDAKSICRMLLTKNPKERLGCRG  252 (285)
T ss_pred             --CcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccc----cCCccCCHHHHHHHHHHhhcCHHHhcCCCC
Confidence              88999999999999999999999753321  1223333322211    122357889999999999999999997   


Q ss_pred             --HHHHHH
Q psy1840         180 --LRFVHH  185 (423)
Q Consensus       180 --~~~I~~  185 (423)
                        +.++++
T Consensus       253 ~~~~~~~~  260 (285)
T cd05631         253 NGAAGVKQ  260 (285)
T ss_pred             CCHHHHhc
Confidence              677765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.93  E-value=1.7e-25  Score=214.18  Aligned_cols=159  Identities=26%  Similarity=0.444  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||+|||+++++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       119 ~~~i~~~i~~~l~~LH~~~i~-H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~-  196 (280)
T cd05043         119 LVHMAIQIACGMSYLHKRGVI-HKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEY-  196 (280)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCC-
Confidence            578999999999999999988 999999999999999999999999875433221111122345667999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||..  ....++...+..+..  +.. ...+++++.+++.+||..+|++|||+.++
T Consensus       197 --~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~li~~~l~~~p~~Rps~~~~  269 (280)
T cd05043         197 --SSASDVWSFGVLLWELMTLGQTPYVE--IDPFEMAAYLKDGYR--LAQ-PINCPDELFAVMACCWALDPEERPSFSQL  269 (280)
T ss_pred             --CchhhHHHhHHHHHHHhcCCCCCcCc--CCHHHHHHHHHcCCC--CCC-CCcCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence              899999999999999998 9999964  344555555554322  222 23578999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       270 ~~~l~~~~~  278 (280)
T cd05043         270 VQCLTDFHA  278 (280)
T ss_pred             HHHHHHHHh
Confidence            999988764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.93  E-value=1.8e-25  Score=212.24  Aligned_cols=159  Identities=23%  Similarity=0.412  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ |+||||+||+++.++.++|+|||++........  ......++..|+|||.+.+... 
T Consensus       108 ~~~~~~~i~~~l~~LH~~~i~-H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~ape~~~~~~~-  183 (267)
T cd08229         108 VWKYFVQLCSALEHMHSRRVM-HRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERIHENGY-  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEEcCCCCEEECcchhhhccccCCc--ccccccCCcCccCHHHhcCCCc-
Confidence            578999999999999999998 999999999999999999999999775532221  1123457788999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|+|++|..||........+....+....  .+......+++.+.+++.+||+.+|++|||+.+|.
T Consensus       184 --~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~  259 (267)
T cd08229         184 --NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD--YPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVY  259 (267)
T ss_pred             --cchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCC--CCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHH
Confidence              88999999999999999999999755444445555554332  23333345788999999999999999999999999


Q ss_pred             HHHHHHh
Q psy1840         185 HKLKEMN  191 (423)
Q Consensus       185 ~~L~~i~  191 (423)
                      +.++++.
T Consensus       260 ~~~~~~~  266 (267)
T cd08229         260 DVAKRMH  266 (267)
T ss_pred             HHHhhhc
Confidence            9988764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.93  E-value=2.2e-25  Score=211.39  Aligned_cols=157  Identities=25%  Similarity=0.500  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccc-cccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ-ERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~-~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.|++.||.|||++|++ ||||||+||+++.++.+||+|||++........... .....++..|+|||.+.+..+
T Consensus        97 ~~~~~~~i~~~l~~lH~~~i~-H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  175 (257)
T cd05115          97 VVELMHQVSMGMKYLEGKNFV-HRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKF  175 (257)
T ss_pred             HHHHHHHHHHHHHHHHhcCee-ecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCC
Confidence            679999999999999999987 999999999999999999999999875432221111 111223467999999876554


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++||+++ |..||..  ....++...+..+...  . .+..+++++.+++.+||..+|++||++.+
T Consensus       176 ---~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~li~~c~~~~~~~Rp~~~~  247 (257)
T cd05115         176 ---SSRSDVWSYGITMWEAFSYGQKPYKK--MKGPEVMSFIEQGKRL--D-CPAECPPEMYALMKDCWIYKWEDRPNFAK  247 (257)
T ss_pred             ---CchhhHHHHHHHHHHHhcCCCCCcCc--CCHHHHHHHHHCCCCC--C-CCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence               889999999999999996 9999974  3456666666665322  2 22357899999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1840         183 VHHKLKEM  190 (423)
Q Consensus       183 I~~~L~~i  190 (423)
                      |.+.|+.+
T Consensus       248 i~~~l~~~  255 (257)
T cd05115         248 VEERMRTY  255 (257)
T ss_pred             HHHHHhhh
Confidence            99988764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0593|consensus

Probab=99.93  E-value=4.5e-26  Score=211.08  Aligned_cols=154  Identities=19%  Similarity=0.327  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      -+++.|++.|+.|+|++++| ||||||+||||+.+|.+||||||+|+.+.....  ..+....|.+|.|||.+.+..  .
T Consensus       104 k~~l~Q~l~ai~~cHk~n~I-HRDIKPENILit~~gvvKLCDFGFAR~L~~pgd--~YTDYVATRWYRaPELLvGDt--q  178 (396)
T KOG0593|consen  104 KKYLYQLLKAIHFCHKNNCI-HRDIKPENILITQNGVVKLCDFGFARTLSAPGD--NYTDYVATRWYRAPELLVGDT--Q  178 (396)
T ss_pred             HHHHHHHHHHhhhhhhcCee-cccCChhheEEecCCcEEeccchhhHhhcCCcc--hhhhhhhhhhccChhhhcccC--c
Confidence            58999999999999999998 999999999999999999999999998764322  234567889999999999854  3


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---------------CCC---CC-CCCC--------CCCc
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---------------GSG---LR-PDTS--------SLDC  158 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---------------~~~---~~-p~~~--------~~~~  158 (423)
                      ++..+||||+||++.||++|++-|++.+  +-+.+..|..               .+.   .+ |...        ..+.
T Consensus       179 YG~pVDiWAiGCv~aEl~~G~pL~PG~S--DiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~  256 (396)
T KOG0593|consen  179 YGKPVDIWAIGCVFAELLTGEPLWPGRS--DIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKI  256 (396)
T ss_pred             CCCcccchhhhHHHHHHhcCCcCCCCcc--hHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccc
Confidence            4899999999999999999999997542  2222222221               110   00 1110        1345


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +.-+.++++.|++.||++|++-++++..
T Consensus       257 s~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  257 SNVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             hHHHHHHHHHHhcCCccccccHHHHhcC
Confidence            6678999999999999999999988753

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.93  E-value=2e-25  Score=214.23  Aligned_cols=156  Identities=27%  Similarity=0.496  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       126 ~~~i~~~i~~al~~lH~~~i~-H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  203 (283)
T cd05090         126 FLHIAIQIAAGMEYLSSHFFV-HKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKF-  203 (283)
T ss_pred             HHHHHHHHHHHHHHHHhcCee-hhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCC-
Confidence            578999999999999999988 999999999999999999999999876533322222233345667999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||..  ....++.+.+...... +  ....+++.+.+++.+||+.||.+||++.+|
T Consensus       204 --~~~~Dv~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i  276 (283)
T cd05090         204 --SSDSDIWSFGVVLWEIFSFGLQPYYG--FSNQEVIEMVRKRQLL-P--CSEDCPPRMYSLMTECWQEGPSRRPRFKDI  276 (283)
T ss_pred             --CchhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcCCcC-C--CCCCCCHHHHHHHHHHcccCcccCcCHHHH
Confidence              889999999999999998 8889864  3445666666554322 1  223678999999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|+.
T Consensus       277 ~~~l~~  282 (283)
T cd05090         277 HTRLRS  282 (283)
T ss_pred             HHHhhc
Confidence            888753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.93  E-value=2.4e-25  Score=214.54  Aligned_cols=159  Identities=27%  Similarity=0.459  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|+.|||+.+++ ||||||+||++++++.+||+|||+++...............++..|+|||.+.+... 
T Consensus       129 ~~~i~~~i~~~l~~LH~~~iv-H~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~-  206 (290)
T cd05045         129 LISFAWQISRGMQYLAEMKLV-HRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIY-  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-hhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCc-
Confidence            579999999999999999998 999999999999999999999999875433222111223345567999998876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||..  ....++.+.+..+.  .+. ....++.++.+++.+||+.+|++||++.++
T Consensus       207 --~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i  279 (290)
T cd05045         207 --TTQSDVWSFGVLLWEIVTLGGNPYPG--IAPERLFNLLKTGY--RME-RPENCSEEMYNLMLTCWKQEPDKRPTFADI  279 (290)
T ss_pred             --chHhHHHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHhCCC--CCC-CCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence              899999999999999998 9999964  34566666655432  222 124578899999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      .+.|+++..
T Consensus       280 ~~~l~~~~~  288 (290)
T cd05045         280 SKELEKMMV  288 (290)
T ss_pred             HHHHHHHHh
Confidence            999988754

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG0595|consensus

Probab=99.93  E-value=4.2e-26  Score=219.00  Aligned_cols=150  Identities=23%  Similarity=0.421  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC------ccEEEeccCCcccccCCCcccccccccCCccccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR------WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~------~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l   98 (423)
                      .-.++.||+.||++||+++|| ||||||+||||+..      -.+||+|||+++.+....   ...+.+|++.|||||++
T Consensus       111 ~r~Fm~QLA~alq~L~~~~Ii-HRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~---~a~tlcGSplYMAPEV~  186 (429)
T KOG0595|consen  111 ARHFMQQLASALQFLHENNII-HRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS---MAETLCGSPLYMAPEVI  186 (429)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eccCCcceEEeccCCCCCCCceEEecccchhhhCCchh---HHHHhhCCccccCHHHH
Confidence            458999999999999999998 99999999999764      578999999999876332   33578999999999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      +...|   +.|+|+||.|+|+|++++|+.||.  ..+..++...++.+....|.... .++..+.+++...+..+|.+|.
T Consensus       187 ~~~~Y---dAKADLWSiG~Ilyq~l~g~~Pf~--a~t~~eL~~~~~k~~~~~~~~~~-~~s~~~~~Ll~~ll~~~~~~~~  260 (429)
T KOG0595|consen  187 MSQQY---DAKADLWSIGTILYQCLTGKPPFD--AETPKELLLYIKKGNEIVPVLPA-ELSNPLRELLISLLQRNPKDRI  260 (429)
T ss_pred             Hhccc---cchhhHHHHHHHHHHHHhCCCCcc--ccCHHHHHHHHhccccccCchhh-hccCchhhhhhHHHhcCccccC
Confidence            87766   999999999999999999999997  46778899888888776665543 4556667899999999999998


Q ss_pred             CHHHHH
Q psy1840         179 DLRFVH  184 (423)
Q Consensus       179 t~~~I~  184 (423)
                      ++.+..
T Consensus       261 ~~~~~~  266 (429)
T KOG0595|consen  261 SFEDFF  266 (429)
T ss_pred             chHHhh
Confidence            876543

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.93  E-value=2.1e-25  Score=212.39  Aligned_cols=156  Identities=24%  Similarity=0.452  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.|++.||+|||+.|++ ||||||+||+++.++.+|++|||.+........ .......++..|+|||.+.+..+ 
T Consensus       109 ~~~~~~~i~~al~~lH~~~ii-H~dikp~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~-  185 (266)
T cd05064         109 LMGMLPGLASGMKYLSEMGYV-HKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAI-YTTMSGKSPVLWAAPEAIQYHHF-  185 (266)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-eccccHhhEEEcCCCcEEECCCcccccccccch-hcccCCCCceeecCHHHHhhCCc-
Confidence            689999999999999999988 999999999999999999999998654322111 11112334567999999877655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++||+++ |..||.+  ....+++..+..+...  .. +..++..+.+++.+||+.+|++||++.+|
T Consensus       186 --~~~~Di~slG~~l~ell~~g~~p~~~--~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~li~~c~~~~p~~RP~~~~i  258 (266)
T cd05064         186 --SSASDVWSFGIVMWEVMSYGERPYWD--MSGQDVIKAVEDGFRL--PA-PRNCPNLLHQLMLDCWQKERGERPRFSQI  258 (266)
T ss_pred             --cchhHHHHHHHHHHHHhcCCCCCcCc--CCHHHHHHHHHCCCCC--CC-CCCCCHHHHHHHHHHcCCCchhCCCHHHH
Confidence              889999999999999875 9999974  3456666766654322  22 34688999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      .+.|..+
T Consensus       259 ~~~l~~~  265 (266)
T cd05064         259 HSILSKM  265 (266)
T ss_pred             HHHHHhh
Confidence            9987654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.93  E-value=3e-25  Score=216.65  Aligned_cols=161  Identities=27%  Similarity=0.463  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.|++.||.|||++|++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       136 ~~~~~~qi~~aL~~lH~~gi~-H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  213 (314)
T cd05099         136 LVSCAYQVARGMEYLESRRCI-HRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVY-  213 (314)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCc-
Confidence            578999999999999999998 999999999999999999999999876533221111122234457999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||..  .+..++...+..+...  . ....++.++.+++.+||+.+|++||++.++
T Consensus       214 --~~~~DiwslG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~li~~cl~~~p~~Rps~~~l  286 (314)
T cd05099         214 --THQSDVWSFGILMWEIFTLGGSPYPG--IPVEELFKLLREGHRM--D-KPSNCTHELYMLMRECWHAVPTQRPTFKQL  286 (314)
T ss_pred             --CccchhhHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCC--C-CCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence              889999999999999998 8888863  4456666666554321  1 123678899999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q psy1840         184 HHKLKEMNAGL  194 (423)
Q Consensus       184 ~~~L~~i~~~~  194 (423)
                      ++.|+.+....
T Consensus       287 l~~l~~~~~~~  297 (314)
T cd05099         287 VEALDKVLAAV  297 (314)
T ss_pred             HHHHHHHHHHh
Confidence            99998876544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=2.3e-25  Score=212.74  Aligned_cols=155  Identities=28%  Similarity=0.519  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+... 
T Consensus       121 ~~~~~~~i~~~l~~lH~~~i~-H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  198 (277)
T cd05032         121 FIQMAAEIADGMAYLAAKKFV-HRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVF-  198 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCC-
Confidence            678999999999999999998 999999999999999999999999875543322222223345678999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++||+++ |..||..  .+..+....+..+..  +.. +..++..+.+++.+||+.+|++|||+.++
T Consensus       199 --~~~~Di~slG~il~el~t~g~~p~~~--~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~li~~~l~~~p~~Rpt~~~l  271 (277)
T cd05032         199 --TTKSDVWSFGVVLWEMATLAEQPYQG--LSNEEVLKFVIDGGH--LDL-PENCPDKLLELMRMCWQYNPKMRPTFLEI  271 (277)
T ss_pred             --CcccchHHHHHHHHHhhccCCCCCcc--CCHHHHHHHHhcCCC--CCC-CCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence              889999999999999998 8889863  345666666654322  222 23568999999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      ++.|+
T Consensus       272 ~~~l~  276 (277)
T cd05032         272 VSSLK  276 (277)
T ss_pred             HHHhc
Confidence            98774

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.93  E-value=3.6e-25  Score=214.35  Aligned_cols=160  Identities=29%  Similarity=0.459  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|++|||++|++ ||||||+||+++.++.+||+|||++.......   .......+..|+|||.+.+..+ 
T Consensus       121 ~~~i~~qi~~al~~lH~~~iv-H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~-  195 (297)
T cd05089         121 LLQFASDVATGMQYLSEKQFI-HRDLAARNVLVGENLASKIADFGLSRGEEVYV---KKTMGRLPVRWMAIESLNYSVY-  195 (297)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCcCCcceEEECCCCeEEECCcCCCcccccee---ccCCCCcCccccCchhhccCCC-
Confidence            578999999999999999998 99999999999999999999999975422111   1111223456999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....++...+..+.  .+.. ...++.++.+++.+||+.+|.+||++.+|
T Consensus       196 --~~~~DvwSlG~il~el~t~g~~pf~~--~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  268 (297)
T cd05089         196 --TTKSDVWSFGVLLWEIVSLGGTPYCG--MTCAELYEKLPQGY--RMEK-PRNCDDEVYELMRQCWRDRPYERPPFAQI  268 (297)
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHhcCC--CCCC-CCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999997 9999964  34455666655432  2221 23578999999999999999999999999


Q ss_pred             HHHHHHHhhhcCC
Q psy1840         184 HHKLKEMNAGLKA  196 (423)
Q Consensus       184 ~~~L~~i~~~~~~  196 (423)
                      .+.|..+..+.+.
T Consensus       269 ~~~l~~~~~~~~~  281 (297)
T cd05089         269 SVQLSRMLEARKA  281 (297)
T ss_pred             HHHHHHHHHhhcc
Confidence            9999888765543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>KOG1187|consensus

Probab=99.93  E-value=9.8e-26  Score=223.61  Aligned_cols=168  Identities=26%  Similarity=0.385  Sum_probs=122.9

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccc-cCCccc
Q psy1840          16 LSPFNIPIGSISVNTTASVGMIHLHDSE--IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKL-RRRKLY   92 (423)
Q Consensus        16 ~~~~~~p~~~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~-~gt~~y   92 (423)
                      .++|..   |++|+.++|+||+|||...  .|+||||||+|||+|.++.+||+|||+++..... .... ... .||..|
T Consensus       170 ~L~W~~---R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~-~~~~-~~~~~gt~gY  244 (361)
T KOG1187|consen  170 PLDWET---RLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEG-DTSV-STTVMGTFGY  244 (361)
T ss_pred             CCCHHH---HHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCcc-ccce-eeecCCCCcc
Confidence            347877   9999999999999999864  3559999999999999999999999999665431 1111 122 789999


Q ss_pred             cCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCC-CChHHHHH----HHhcC---CCCCCCCCCC-----Cch
Q psy1840          93 KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR-MTDEEIIT----SVTQG---SGLRPDTSSL-----DCA  159 (423)
Q Consensus        93 ~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~-~~~~~i~~----~i~~~---~~~~p~~~~~-----~~~  159 (423)
                      +|||++..+..   +.|+||||||+++.|+++|+.|..... .....+..    .+..+   ....|.....     ..-
T Consensus       245 ~~PEy~~~g~l---t~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~  321 (361)
T KOG1187|consen  245 LAPEYASTGKL---TEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEV  321 (361)
T ss_pred             CChhhhccCCc---CcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHH
Confidence            99999987655   999999999999999999998876432 11111222    12222   1112222111     123


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHh
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHHKLKEMN  191 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~  191 (423)
                      ..+..+..+|++.+|.+||+|.+|++.|+.+.
T Consensus       322 ~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~  353 (361)
T KOG1187|consen  322 KKLAELALRCLRPDPKERPTMSQVVKELEGIL  353 (361)
T ss_pred             HHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhc
Confidence            44777889999999999999999988885554

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.93  E-value=8.9e-26  Score=222.07  Aligned_cols=160  Identities=19%  Similarity=0.229  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++........ .......++..|+|||++.+.. 
T Consensus       105 ~~~i~~qi~~aL~~LH~~~iv-H~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~-  182 (338)
T cd07859         105 HQFFLYQLLRALKYIHTANVF-HRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFF-  182 (338)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccc-
Confidence            578999999999999999988 9999999999999999999999998754322111 1123456889999999986521 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC-------------hHHHHHHHh------------cCCCCCCCCCCCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-------------DEEIITSVT------------QGSGLRPDTSSLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-------------~~~i~~~i~------------~~~~~~p~~~~~~~  158 (423)
                      ..++.++|||||||++|||++|+.||......             ..+....+.            ...+.........+
T Consensus       183 ~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (338)
T cd07859         183 SKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNA  262 (338)
T ss_pred             cccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCC
Confidence            13488999999999999999999999643210             011111111            10110000011246


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++.+.+++.+||+.||++||++.++++.
T Consensus       263 ~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         263 DPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             ChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            7889999999999999999999999864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.93  E-value=7.7e-26  Score=221.98  Aligned_cols=149  Identities=19%  Similarity=0.293  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||+.|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||.+.+..+ 
T Consensus        97 ~~~~~~qi~~~L~~lH~~~iv-HrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  172 (323)
T cd05571          97 ARFYGAEIVSALGYLHSCDVV-YRDLKLENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPEVLEDNDY-  172 (323)
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-eCCCCHHHEEECCCCCEEEeeCCCCcccccCC--CcccceecCccccChhhhcCCCC-
Confidence            467889999999999999998 99999999999999999999999986432211  11234568999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++|||||||++|||++|..||..  .+...+...+..+....|    ..+++++.+++.+||+.||++||     +
T Consensus       173 --~~~~DiwSlG~il~elltg~~Pf~~--~~~~~~~~~~~~~~~~~p----~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (323)
T cd05571         173 --GRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIRFP----RTLSPEAKSLLAGLLKKDPKQRLGGGPED  244 (323)
T ss_pred             --CccccCcccchhhhhhhcCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHccCCHHHcCCCCCCC
Confidence              8999999999999999999999964  334555555554433222    35788999999999999999999     7


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       245 ~~~ll~  250 (323)
T cd05571         245 AKEIME  250 (323)
T ss_pred             HHHHHc
Confidence            888765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.93  E-value=2.5e-25  Score=213.46  Aligned_cols=155  Identities=27%  Similarity=0.568  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|++|||+.|++ ||||||+||++++++.+||+|||++................+++.|+|||.+.+..+ 
T Consensus       124 ~~~~~~qi~~al~~LH~~~i~-H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  201 (280)
T cd05092         124 MLAIASQIASGMVYLASLHFV-HRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKF-  201 (280)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCc-
Confidence            578999999999999999998 999999999999999999999999865432221111122334567999999887654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....+....+..+...   .....+++.+.+++.+||+.||++||++.+|
T Consensus       202 --~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l  274 (280)
T cd05092         202 --TTESDIWSFGVVLWEIFTYGKQPWYQ--LSNTEAIECITQGREL---ERPRTCPPEVYAIMQGCWQREPQQRMVIKDI  274 (280)
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCCcc--CCHHHHHHHHHcCccC---CCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence              889999999999999998 8889863  3345555555554322   1223678999999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      .+.|+
T Consensus       275 ~~~l~  279 (280)
T cd05092         275 HSRLQ  279 (280)
T ss_pred             HHHHh
Confidence            98775

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.93  E-value=2.3e-25  Score=210.54  Aligned_cols=151  Identities=24%  Similarity=0.492  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||+|||++|++ ||||||+||+++.++.+||+|||++.......     .....+..|+|||.+.+..+ 
T Consensus       104 ~~~~~~~i~~~l~~lH~~~i~-H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~-  176 (256)
T cd05082         104 LLKFSLDVCEAMEYLEANNFV-HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKF-  176 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-ccccchheEEEcCCCcEEecCCccceeccccC-----CCCccceeecCHHHHccCCC-
Confidence            578999999999999999988 99999999999999999999999976543221     12234457999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....++...+..+..  + .....+++.+.+++.+||+.+|++|||+.++
T Consensus       177 --~~~~Dv~slG~i~~~l~~~g~~p~~~--~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l  249 (256)
T cd05082         177 --STKSDVWSFGILLWEIYSFGRVPYPR--IPLKDVVPRVEKGYK--M-DAPDGCPPVVYDVMKQCWHLDAATRPSFLQL  249 (256)
T ss_pred             --CchhhhHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHhcCCC--C-CCCCCCCHHHHHHHHHHhcCChhhCcCHHHH
Confidence              889999999999999997 8999863  344566666654321  2 2234678999999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|+.
T Consensus       250 ~~~l~~  255 (256)
T cd05082         250 REQLEH  255 (256)
T ss_pred             HHHHhc
Confidence            988865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.93  E-value=4.1e-25  Score=209.20  Aligned_cols=158  Identities=25%  Similarity=0.489  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc--ccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE--TGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .+.++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||+++.......  ........++..|+|||.+.+..
T Consensus       100 ~~~~~~~i~~~l~~lH~~~i~-H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  178 (262)
T cd05058         100 LIGFGLQVAKGMEYLASKKFV-HRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQK  178 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCc
Confidence            578899999999999999998 999999999999999999999999865432211  11112334566799999987655


Q ss_pred             CCCCCCccchHHHHHHHHHHHhC-CCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg-~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++|||||||++|||++| ..||..  ....++...+..+...  . ....++..+.+++.+||+.+|++||++.
T Consensus       179 ~---~~~~Di~slG~~l~el~~~~~~~~~~--~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~li~~cl~~~p~~Rp~~~  250 (262)
T cd05058         179 F---TTKSDVWSFGVLLWELMTRGAPPYPD--VDSFDITVYLLQGRRL--L-QPEYCPDPLYEVMLSCWHPKPEMRPTFS  250 (262)
T ss_pred             c---chHHHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHhcCCCC--C-CCCcCCHHHHHHHHHHcCCChhhCCCHH
Confidence            4   8899999999999999995 556653  3445555555544322  1 1234678999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy1840         182 FVHHKLKEMN  191 (423)
Q Consensus       182 ~I~~~L~~i~  191 (423)
                      +|+..|+.+.
T Consensus       251 ~il~~l~~~~  260 (262)
T cd05058         251 ELVSRIEQIF  260 (262)
T ss_pred             HHHHHHHHHh
Confidence            9999988765

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.93  E-value=2.3e-25  Score=230.25  Aligned_cols=152  Identities=20%  Similarity=0.358  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+|||++.++.+||+|||+++...............||+.|+|||++.+..+ 
T Consensus       171 ~~~i~~qi~~aL~~lH~~~iv-HrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-  248 (478)
T PTZ00267        171 VGLLFYQIVLALDEVHSRKMM-HRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRY-  248 (478)
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-ECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCC-
Confidence            567899999999999999988 999999999999999999999999886543322222345578999999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|+.||..  ....++...+..+....   .+..++.++.+++.+||+.||++||++.+++
T Consensus       249 --~~~~Dv~slG~~l~el~tg~~Pf~~--~~~~~~~~~~~~~~~~~---~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l  321 (478)
T PTZ00267        249 --SKKADMWSLGVILYELLTLHRPFKG--PSQREIMQQVLYGKYDP---FPCPVSSGMKALLDPLLSKNPALRPTTQQLL  321 (478)
T ss_pred             --CcHHhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCC---CCccCCHHHHHHHHHHhccChhhCcCHHHHH
Confidence              8999999999999999999999964  34556666665543221   1235788999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      .
T Consensus       322 ~  322 (478)
T PTZ00267        322 H  322 (478)
T ss_pred             h
Confidence            5

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=9.3e-26  Score=220.27  Aligned_cols=146  Identities=21%  Similarity=0.269  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||.+.+..+ 
T Consensus        95 ~~~~~~qi~~~l~~lH~~~i~-HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  170 (312)
T cd05585          95 ARFYTAELLCALENLHKFNVI-YRDLKPENILLDYQGHIALCDFGLCKLNMKDD--DKTNTFCGTPEYLAPELLLGHGY-  170 (312)
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-eCCCCHHHeEECCCCcEEEEECcccccCccCC--CccccccCCcccCCHHHHcCCCC-
Confidence            567899999999999999998 99999999999999999999999987532221  12234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                        +.++|||||||++|||++|..||..  ....+....+.......|    ..+++++.+++.+||+.||.+||++..
T Consensus       171 --~~~~DvwslGvil~el~tg~~pf~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dp~~R~~~~~  240 (312)
T cd05585         171 --TKAVDWWTLGVLLYEMLTGLPPFYD--ENVNEMYRKILQEPLRFP----DGFDRDAKDLLIGLLSRDPTRRLGYNG  240 (312)
T ss_pred             --CCccceechhHHHHHHHhCCCCcCC--CCHHHHHHHHHcCCCCCC----CcCCHHHHHHHHHHcCCCHHHcCCCCC
Confidence              8999999999999999999999974  344556666555433222    357889999999999999999986543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.93  E-value=4.2e-25  Score=209.40  Aligned_cols=159  Identities=23%  Similarity=0.417  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|+.|||+.|++ ||||+|+||+++.++.++|+|||++........  ......++..|+|||.+.+..+ 
T Consensus       108 ~~~~~~~l~~~l~~lh~~~i~-h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~apE~~~~~~~-  183 (267)
T cd08224         108 IWKYFVQLCSALEHMHSKRIM-HRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERIHENGY-  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cCCcChhhEEECCCCcEEEeccceeeeccCCCc--ccceecCCccccCHHHhccCCC-
Confidence            579999999999999999998 999999999999999999999999875432221  1123457788999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|++++|..||.....+..++...+..+.  .+..+...++..+.+++.+||..+|++||++.+|+
T Consensus       184 --~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il  259 (267)
T cd08224         184 --NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCD--YPPLPADHYSEELRDLVSRCINPDPEKRPDISYVL  259 (267)
T ss_pred             --CchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCC--CCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence              88999999999999999999999765555555555555432  22233335788999999999999999999999999


Q ss_pred             HHHHHHh
Q psy1840         185 HKLKEMN  191 (423)
Q Consensus       185 ~~L~~i~  191 (423)
                      +.++.+.
T Consensus       260 ~~~~~~~  266 (267)
T cd08224         260 QVAKEMH  266 (267)
T ss_pred             HHHHHhc
Confidence            9998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.93  E-value=3.1e-25  Score=214.01  Aligned_cols=158  Identities=27%  Similarity=0.465  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ ||||||+||+++.++.++|+|||+++...............++..|+|||.+.+..+ 
T Consensus       132 ~~~~~~~i~~al~~LH~~~i~-H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  209 (296)
T cd05051         132 LLYMATQIASGMRYLESLNFV-HRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKF-  209 (296)
T ss_pred             HHHHHHHHHHHHHHHHHcCcc-ccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCC-
Confidence            578999999999999999998 999999999999999999999999875433322222233445677999999877554 


Q ss_pred             CCCCccchHHHHHHHHHHHh--CCCCCCCCCCChHHHHHHHhcC----CCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG--RQGPWGHLRMTDEEIITSVTQG----SGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt--g~~Pf~~~~~~~~~i~~~i~~~----~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                        +.++|||||||++||+++  +..||..  .+..+++..+...    ...........++.++.+++.+||+.||++||
T Consensus       210 --~~~~Dv~slG~~l~el~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  285 (296)
T cd05051         210 --TTKSDVWAFGVTLWEILTLCREQPYEH--LTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRP  285 (296)
T ss_pred             --CccchhhhhHHHHHHHHhcCCCCCCCC--cChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCC
Confidence              899999999999999998  5667753  3344555444322    11111111235678999999999999999999


Q ss_pred             CHHHHHHHHH
Q psy1840         179 DLRFVHHKLK  188 (423)
Q Consensus       179 t~~~I~~~L~  188 (423)
                      |+.+|++.|+
T Consensus       286 t~~el~~~L~  295 (296)
T cd05051         286 TFREIHLFLQ  295 (296)
T ss_pred             CHHHHHHHhc
Confidence            9999988875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.93  E-value=6.4e-25  Score=208.71  Aligned_cols=157  Identities=27%  Similarity=0.521  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       108 ~~~~~~~l~~~l~~Lh~~~i~-H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~-  185 (266)
T cd05033         108 LVGMLRGIASGMKYLSEMNYV-HRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKF-  185 (266)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCC-
Confidence            679999999999999999998 999999999999999999999999886642222211122334567999999887654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|++++ |..||..  ....++...+..+....   ....++..+.+++.+||+.+|++||++.+|
T Consensus       186 --~~~~Dv~slG~~l~~l~~~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei  258 (266)
T cd05033         186 --TSASDVWSFGIVMWEVMSYGERPYWD--MSNQDVIKAVEDGYRLP---PPMDCPSALYQLMLDCWQKDRNERPTFSQI  258 (266)
T ss_pred             --ccccchHHHHHHHHHHHccCCCCCCC--CCHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence              889999999999999997 9999864  44566666665542221   123678999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      .+.|..+
T Consensus       259 ~~~l~~~  265 (266)
T cd05033         259 VSTLDKM  265 (266)
T ss_pred             HHHHHhh
Confidence            9988764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.93  E-value=4.9e-25  Score=211.02  Aligned_cols=174  Identities=17%  Similarity=0.349  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ |+||+|+||+++.++.++|+|||++........  ......++..|+|||.+.+... 
T Consensus       103 ~~~~~~~l~~~l~~lh~~~iv-H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~apE~~~~~~~-  178 (277)
T cd06640         103 IATMLKEILKGLDYLHSEKKI-HRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIQQSAY-  178 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-CcCCChhhEEEcCCCCEEEcccccceeccCCcc--ccccccCcccccCHhHhccCCC-
Confidence            568899999999999999998 999999999999999999999999865433221  1123456778999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|||++|..||...  ........+..+.   +......++..+.+++.+||+.+|++||++.+++
T Consensus       179 --~~~~Dv~slG~il~el~tg~~p~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  251 (277)
T cd06640         179 --DSKADIWSLGITAIELAKGEPPNSDM--HPMRVLFLIPKNN---PPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELL  251 (277)
T ss_pred             --ccHHHHHHHHHHHHHHHHCCCCCCCc--ChHhHhhhhhcCC---CCCCchhhhHHHHHHHHHHcccCcccCcCHHHHH
Confidence              88999999999999999999999642  3333343333221   2222335788999999999999999999999999


Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHHh
Q psy1840         185 HKLKEMNAGLKANIFDNMLAIMEKY  209 (423)
Q Consensus       185 ~~L~~i~~~~~~~~~d~~~~~~e~~  209 (423)
                      ..--......+.+..+.+.+++++|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~  276 (277)
T cd06640         252 KHKFIVKNAKKTSYLTELIDRFKRW  276 (277)
T ss_pred             hChHhhhcchhhhHHHHHHHHHHhc
Confidence            8877777778899999999999987

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.93  E-value=4.3e-25  Score=214.79  Aligned_cols=160  Identities=28%  Similarity=0.442  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.|++.||+|||+.|++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       142 ~~~~~~qi~~aL~~lH~~gi~-H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  219 (307)
T cd05098         142 LVSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY-  219 (307)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCC-
Confidence            678999999999999999998 999999999999999999999999875432211111122233467999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....++...+..+..  +. ....++.++.+++.+||..+|++||++.+|
T Consensus       220 --~~~~DvwslG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  292 (307)
T cd05098         220 --THQSDVWSFGVLLWEIFTLGGSPYPG--VPVEELFKLLKEGHR--MD-KPSNCTNELYMMMRDCWHAVPSQRPTFKQL  292 (307)
T ss_pred             --CcHHHHHHHHHHHHHHHcCCCCCCCc--CCHHHHHHHHHcCCC--CC-CCCcCCHHHHHHHHHHcccChhhCcCHHHH
Confidence              889999999999999998 7888863  344556666554432  11 223578899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ++.|+++...
T Consensus       293 l~~l~~~~~~  302 (307)
T cd05098         293 VEDLDRILAL  302 (307)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=6.9e-25  Score=207.41  Aligned_cols=157  Identities=25%  Similarity=0.470  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-ccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.|++.|+.|||..+++ ||||||+||+++.++.+||+|||+++......... ......++..|+|||.+.+..+
T Consensus        97 ~~~~~~qi~~~l~~lh~~~i~-H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  175 (257)
T cd05060          97 LKELAHQVAMGMAYLESKHFV-HRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKF  175 (257)
T ss_pred             HHHHHHHHHHHHHHHhhcCee-ccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCC
Confidence            689999999999999999987 99999999999999999999999987553222111 1111223457999999877654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++||+++ |..||..  ....++...+......   .....++..+.+++.+||..+|++||++.+
T Consensus       176 ---~~~~Di~slG~~l~~~~~~g~~p~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~  247 (257)
T cd05060         176 ---SSKSDVWSYGVTLWEAFSYGAKPYGE--MKGAEVIAMLESGERL---PRPEECPQEIYSIMLSCWKYRPEDRPTFSE  247 (257)
T ss_pred             ---CccchHHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHHcCCcC---CCCCCCCHHHHHHHHHHhcCChhhCcCHHH
Confidence               889999999999999998 9999964  3445666666554322   223457889999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1840         183 VHHKLKEM  190 (423)
Q Consensus       183 I~~~L~~i  190 (423)
                      +.+.|+.+
T Consensus       248 l~~~l~~~  255 (257)
T cd05060         248 LESTFRRD  255 (257)
T ss_pred             HHHHHHhc
Confidence            99988764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG4278|consensus

Probab=99.92  E-value=4.4e-25  Score=220.21  Aligned_cols=173  Identities=26%  Similarity=0.500  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      -+.++.||..||+||..+++| ||||..+|||+..+..||++|||++++..+...... ....-..-|+|||.+....+ 
T Consensus       367 LlyMAtQIsSaMeYLEkknFI-HRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAH-AGAKFPIKWTAPEsLAyNtF-  443 (1157)
T KOG4278|consen  367 LLYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAH-AGAKFPIKWTAPESLAYNTF-  443 (1157)
T ss_pred             HHHHHHHHHHHHHHHHHhhhh-hhhhhhhhccccccceEEeeccchhhhhcCCceecc-cCccCcccccCccccccccc-
Confidence            578999999999999999999 999999999999999999999999998866544322 11222345999999987665 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.|+|||+||++||||.| |-.||.+.  +..++...+..+-..  . .+..|++.+.+||.+||+++|.+||+|.+|
T Consensus       444 --SiKSDVWAFGVLLWEIATYGMsPYPGi--dlSqVY~LLEkgyRM--~-~PeGCPpkVYeLMraCW~WsPsDRPsFaei  516 (1157)
T KOG4278|consen  444 --SIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYGLLEKGYRM--D-GPEGCPPKVYELMRACWNWSPSDRPSFAEI  516 (1157)
T ss_pred             --ccchhhHHHHHHHHHHHhcCCCCCCCc--cHHHHHHHHhccccc--c-CCCCCCHHHHHHHHHHhcCCcccCccHHHH
Confidence              899999999999999997 77899854  446667767665322  2 234799999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCChHHHHHHHHHHh
Q psy1840         184 HHKLKEMNAGLKANIFDNMLAIMEKY  209 (423)
Q Consensus       184 ~~~L~~i~~~~~~~~~d~~~~~~e~~  209 (423)
                      .+.++.+...  .++-|.+.+.+.+.
T Consensus       517 HqafEtmf~~--sSisdEV~keLgk~  540 (1157)
T KOG4278|consen  517 HQAFETMFSS--SSISDEVQKELGKN  540 (1157)
T ss_pred             HHHHHHHhcc--ccccHHHHHHHhhc
Confidence            9999988764  35556666655553

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=6.2e-25  Score=209.70  Aligned_cols=175  Identities=18%  Similarity=0.353  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ ||||+|+||++++++.++|+|||++.......  .......++..|+|||.+.+..+ 
T Consensus       100 ~~~~~~ql~~~l~~lh~~~i~-h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~-  175 (274)
T cd06609         100 IAFILREVLLGLEYLHEEGKI-HRDIKAANILLSEEGDVKLADFGVSGQLTSTM--SKRNTFVGTPFWMAPEVIKQSGY-  175 (274)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEEECCCCCEEEcccccceeecccc--cccccccCCccccChhhhccCCC-
Confidence            578999999999999999988 99999999999999999999999987654332  12234467788999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||+++|++++|+.||...  ........+....  .+......++..+.+++.+||..+|++||++.+++
T Consensus       176 --~~~sDv~slG~il~~l~tg~~p~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il  249 (274)
T cd06609         176 --DEKADIWSLGITAIELAKGEPPLSDL--HPMRVLFLIPKNN--PPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELL  249 (274)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCcccC--chHHHHHHhhhcC--CCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence              89999999999999999999999643  2334444444332  22222223788999999999999999999999997


Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHHhh
Q psy1840         185 HKLKEMNAGLKANIFDNMLAIMEKYA  210 (423)
Q Consensus       185 ~~L~~i~~~~~~~~~d~~~~~~e~~~  210 (423)
                      +. .-+....+.+..+.+..++++|.
T Consensus       250 ~~-~~~~~~~~~~~~~~~~~~~~~~~  274 (274)
T cd06609         250 KH-KFIKKAKKTSYLTLLIERIKKWK  274 (274)
T ss_pred             hC-hhhcCCCcccHHHHHHHHHHhcC
Confidence            75 33344455689999999999873

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=2.7e-25  Score=214.74  Aligned_cols=147  Identities=18%  Similarity=0.230  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||+|||++|++ ||||||+||+++.++.+||+|||++......     .....|++.|+|||.+.+..+ 
T Consensus       103 ~~~~~~qi~~~l~~lH~~~i~-H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-  175 (291)
T cd05612         103 GLFYASEIVCALEYLHSKEIV-YRDLKPENILLDKEGHIKLTDFGFAKKLRDR-----TWTLCGTPEYLAPEVIQSKGH-  175 (291)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCCCHHHeEECCCCCEEEEecCcchhccCC-----cccccCChhhcCHHHHcCCCC-
Confidence            578999999999999999998 9999999999999999999999998754322     123468889999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-----  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-----  179 (423)
                        +.++|||||||++|||++|+.||..  ....++...+..+....|    ...+..+.+++++||+.||.+||+     
T Consensus       176 --~~~~DiwSlG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~~~----~~~~~~~~~li~~~l~~dp~~R~~~~~~~  247 (291)
T cd05612         176 --NKAVDWWALGILIYEMLVGYPPFFD--DNPFGIYEKILAGKLEFP----RHLDLYAKDLIKKLLVVDRTRRLGNMKNG  247 (291)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCcCCC----ccCCHHHHHHHHHHcCCCHHHccCCccCC
Confidence              8999999999999999999999974  345666666666543322    245789999999999999999995     


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       248 ~~~~l~h  254 (291)
T cd05612         248 ADDVKNH  254 (291)
T ss_pred             HHHHhcC
Confidence            7776643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0033|consensus

Probab=99.92  E-value=3.6e-25  Score=199.61  Aligned_cols=151  Identities=17%  Similarity=0.257  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc---CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLID---SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld---~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.||+.+|.|+|.+||+ |||+||+|+++.   ...-+||+|||++..+.+.   .......||+.|||||+++..++
T Consensus       114 H~~rQiLeal~yCH~n~Iv-HRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g---~~~~G~~GtP~fmaPEvvrkdpy  189 (355)
T KOG0033|consen  114 HCIQQILEALAYCHSNGIV-HRDLKPENLLLASKAKGAAVKLADFGLAIEVNDG---EAWHGFAGTPGYLSPEVLKKDPY  189 (355)
T ss_pred             HHHHHHHHHHHHHHhcCce-eccCChhheeeeeccCCCceeecccceEEEeCCc---cccccccCCCcccCHHHhhcCCC
Confidence            5789999999999999998 999999999995   3456999999999876522   23356789999999999998766


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +..+|||+-|+|+|-++.|..||.+  .+...+.+.+..+....|......++++.++|+.+|+..||.+|.|+.|.
T Consensus       190 ---~kpvDiW~cGViLfiLL~G~~PF~~--~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EA  264 (355)
T KOG0033|consen  190 ---SKPVDIWACGVILYILLVGYPPFWD--EDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEA  264 (355)
T ss_pred             ---CCcchhhhhhHHHHHHHhCCCCCCC--ccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHH
Confidence               8999999999999999999999974  46688999999998877776677899999999999999999999999988


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       265 L~H  267 (355)
T KOG0033|consen  265 LKH  267 (355)
T ss_pred             hCC
Confidence            764

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=9.3e-25  Score=206.98  Aligned_cols=155  Identities=28%  Similarity=0.483  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.|++ ||||||+||+++.++.+||+|||++......... .......+..|+|||.+.+... 
T Consensus       105 ~~~~~~~i~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~-  181 (261)
T cd05068         105 LIDMAAQVASGMAYLEAQNYI-HRDLAARNVLVGENNICKVADFGLARVIKEDIYE-AREGAKFPIKWTAPEAALYNRF-  181 (261)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-eccCCcceEEEcCCCCEEECCcceEEEccCCccc-ccCCCcCceeccCccccccCCC-
Confidence            689999999999999999988 9999999999999999999999998765422111 1111223356999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |+.||..  .....+...+.....  +. ....++..+.+++.+||+.+|++||++.++
T Consensus       182 --~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l  254 (261)
T cd05068         182 --SIKSDVWSFGILLTEIVTYGRMPYPG--MTNAEVLQQVDQGYR--MP-CPPGCPKELYDIMLDCWKEDPDDRPTFETL  254 (261)
T ss_pred             --CchhhHHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCC--CC-CCCcCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence              889999999999999999 9999964  344556666554322  11 123578899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      ...|+.
T Consensus       255 ~~~l~~  260 (261)
T cd05068         255 QWKLED  260 (261)
T ss_pred             HHHHhc
Confidence            998864

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.92  E-value=5.4e-25  Score=208.48  Aligned_cols=155  Identities=28%  Similarity=0.568  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||+|||+.+++ ||||||+||+++.++.+||+|||++......... ......++..|+|||.+.+... 
T Consensus       105 ~~~~~~~l~~~l~~LH~~~i~-H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~-  181 (261)
T cd05072         105 LIDFSAQIAEGMAYIERKNYI-HRDLRAANVLVSESLMCKIADFGLARVIEDNEYT-AREGAKFPIKWTAPEAINFGSF-  181 (261)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccccchhhEEecCCCcEEECCCccceecCCCcee-ccCCCccceecCCHHHhccCCC-
Confidence            578999999999999999988 9999999999999999999999998765332211 1122334567999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|+|++ |..||..  ....+....+..+... +  ....++.++.+++.+||..+|++||++.++
T Consensus       182 --~~~~Di~slG~~l~~l~t~g~~p~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  254 (261)
T cd05072         182 --TIKSDVWSFGILLYEIVTYGKIPYPG--MSNSDVMSALQRGYRM-P--RMENCPDELYDIMKTCWKEKAEERPTFDYL  254 (261)
T ss_pred             --ChhhhhhhhHHHHHHHHccCCCCCCC--CCHHHHHHHHHcCCCC-C--CCCCCCHHHHHHHHHHccCCcccCcCHHHH
Confidence              889999999999999998 8999964  3445566666544221 1  123578899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|++
T Consensus       255 ~~~l~~  260 (261)
T cd05072         255 QSVLDD  260 (261)
T ss_pred             HHHHhc
Confidence            988864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.92  E-value=3.2e-25  Score=217.05  Aligned_cols=145  Identities=26%  Similarity=0.414  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||.+.+..+ 
T Consensus        98 ~~~~~~qi~~al~~LH~~~iv-H~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (316)
T cd05592          98 ARFYAAEIICGLQFLHKKGII-YRDLKLDNVLLDKDGHIKIADFGMCKENMNGE--GKASTFCGTPDYIAPEILKGQKY-  173 (316)
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-eCCCCHHHeEECCCCCEEEccCcCCeECCCCC--CccccccCCccccCHHHHcCCCC-
Confidence            467899999999999999988 99999999999999999999999987543222  12234568999999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                        +.++|||||||++|||++|..||..  ....++...+....+..|    ..++.++.+++.+||+.||++||++.
T Consensus       174 --~~~~DvwslG~il~ell~G~~Pf~~--~~~~~~~~~i~~~~~~~~----~~~~~~~~~ll~~~l~~~P~~R~~~~  242 (316)
T cd05592         174 --NESVDWWSFGVLLYEMLIGQSPFHG--EDEDELFDSILNDRPHFP----RWISKEAKDCLSKLFERDPTKRLGVD  242 (316)
T ss_pred             --CCcccchhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHccCCHHHcCCCh
Confidence              8899999999999999999999974  344666666655432222    34788999999999999999999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.92  E-value=3.9e-25  Score=212.20  Aligned_cols=160  Identities=27%  Similarity=0.452  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-ccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.|++.|+.|||+++++ ||||||+||+++.++.+||+|||++.......... ......++..|+|||.+.+...
T Consensus       109 ~~~i~~~l~~~l~~lH~~~i~-H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~  187 (283)
T cd05080         109 LLLFAQQICEGMAYLHSQHYI-HRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKF  187 (283)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCC
Confidence            678999999999999999988 99999999999999999999999987654322111 1112234566999999876654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChH-------------HHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhh
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDE-------------EIITSVTQGSGLRPDTSSLDCAPSIIACMRTCW  170 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~-------------~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~  170 (423)
                         +.++||||||+++|||++|..||........             .+...+..+  ..+.. ...++.++.+++.+||
T Consensus       188 ---~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~li~~cl  261 (283)
T cd05080         188 ---SYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERG--MRLPC-PKNCPQEVYILMKNCW  261 (283)
T ss_pred             ---CcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcC--CCCCC-CCCCCHHHHHHHHHHh
Confidence               8899999999999999999999854221111             111111111  11111 2357899999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHh
Q psy1840         171 EEDPELRPDLRFVHHKLKEMN  191 (423)
Q Consensus       171 ~~dP~~RPt~~~I~~~L~~i~  191 (423)
                      +.+|++|||+.+|++.|+.+.
T Consensus       262 ~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         262 ETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             ccChhhCCCHHHHHHHHHHhh
Confidence            999999999999999988764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.92  E-value=7.7e-25  Score=212.72  Aligned_cols=159  Identities=23%  Similarity=0.444  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       111 ~~~~~~qi~~~L~~LH~~~iv-H~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~-  188 (303)
T cd05110         111 LLNWCVQIAKGMMYLEERRLV-HRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKF-  188 (303)
T ss_pred             HHHHHHHHHHHHHHHhhcCee-ccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCC-
Confidence            578999999999999999998 999999999999999999999999876543322212223344667999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |+.||.+.  ...++...+..+... + . ...++..+.+++.+||..+|++||++.++
T Consensus       189 --~~~~DiwslG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~li~~c~~~~p~~Rp~~~~l  261 (303)
T cd05110         189 --THQSDVWSYGVTIWELMTFGGKPYDGI--PTREIPDLLEKGERL-P-Q-PPICTIDVYMVMVKCWMIDADSRPKFKEL  261 (303)
T ss_pred             --ChHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHCCCCC-C-C-CCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999997 88998643  334444444433221 1 1 23467899999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.+..+..
T Consensus       262 ~~~l~~~~~  270 (303)
T cd05110         262 AAEFSRMAR  270 (303)
T ss_pred             HHHHHHHHh
Confidence            998887643

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG2345|consensus

Probab=99.92  E-value=1.4e-25  Score=202.65  Aligned_cols=164  Identities=20%  Similarity=0.307  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-------ccccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSE--IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-------QERKLRRRKLYKA   94 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-------~~~~~~gt~~y~A   94 (423)
                      +.+.++.+|++||++||...  .. ||||||.|||+.+.+.+++.|||.+....-.....       .......|..|.|
T Consensus       128 ~iL~if~gic~gL~~lH~~~~~yA-H~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRA  206 (302)
T KOG2345|consen  128 QILWIFLGICRGLEALHEKEPPYA-HRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRA  206 (302)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccc-ccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccC
Confidence            35899999999999999986  66 99999999999999999999999876432211111       1123356788999


Q ss_pred             CccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840          95 PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus        95 PE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      ||.+.-+.....+.++|||||||++|+|+.|..||.........+.-.+..+....|....  +++.+.++++.|++.||
T Consensus       207 PELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~--yse~l~~lik~mlqvdP  284 (302)
T KOG2345|consen  207 PELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSR--YSEALHQLIKSMLQVDP  284 (302)
T ss_pred             chheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCC--ccHHHHHHHHHHhcCCc
Confidence            9999876655668999999999999999999999963222222223334444445555443  89999999999999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy1840         175 ELRPDLRFVHHKLKEM  190 (423)
Q Consensus       175 ~~RPt~~~I~~~L~~i  190 (423)
                      .+||++.+++..+..+
T Consensus       285 ~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  285 NQRPTIPELLSKLDDL  300 (302)
T ss_pred             ccCCCHHHHHHHHHhh
Confidence            9999999999887654

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.92  E-value=5.9e-25  Score=208.98  Aligned_cols=155  Identities=28%  Similarity=0.537  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-----cEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-----VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-----~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      .+.++.|++.|+.|||+.+++ ||||||+||+++.++     .+|++|||++................++..|+|||.+.
T Consensus       108 ~~~~~~~l~~~l~~lH~~~i~-H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  186 (269)
T cd05044         108 LLDICLDVAKGCVYLEQMHFI-HRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLL  186 (269)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHc
Confidence            678999999999999999987 999999999999887     89999999987543322211112234456799999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      +...   +.++||||||+++|||++ |..||..  ....+....+..+....   ....++..+.+++.+||..+|.+||
T Consensus       187 ~~~~---~~~~Dv~slG~il~ellt~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rp  258 (269)
T cd05044         187 DGKF---TTQSDVWSFGVLMWEILTLGQQPYPA--LNNQEVLQHVTAGGRLQ---KPENCPDKIYQLMTNCWAQDPSERP  258 (269)
T ss_pred             cCCc---ccchhHHHHHHHHHHHHHcCCCCCcc--cCHHHHHHHHhcCCccC---CcccchHHHHHHHHHHcCCCcccCC
Confidence            7655   899999999999999998 9999963  33445555554432221   1235788999999999999999999


Q ss_pred             CHHHHHHHHH
Q psy1840         179 DLRFVHHKLK  188 (423)
Q Consensus       179 t~~~I~~~L~  188 (423)
                      ++.+|.+.|+
T Consensus       259 ~~~~i~~~l~  268 (269)
T cd05044         259 TFDRIQEILQ  268 (269)
T ss_pred             CHHHHHHHHh
Confidence            9999998875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0660|consensus

Probab=99.92  E-value=2e-25  Score=211.62  Aligned_cols=158  Identities=23%  Similarity=0.291  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      --+++||+.||.|+|+.+++ ||||||+|++++.+..+||+|||+++...........+....|.+|.|||++....  .
T Consensus       128 q~f~YQiLrgLKyiHSAnVi-HRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~--~  204 (359)
T KOG0660|consen  128 QYFLYQILRGLKYIHSANVI-HRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSS--E  204 (359)
T ss_pred             HHHHHHHHHhcchhhccccc-ccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccc--c
Confidence            36799999999999999998 99999999999999999999999999775432222335567889999999986543  5


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCC-------------ChHHHHHHHh--------cCCCCCCCCC----CCCchH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRM-------------TDEEIITSVT--------QGSGLRPDTS----SLDCAP  160 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~-------------~~~~i~~~i~--------~~~~~~p~~~----~~~~~~  160 (423)
                      ++++.||||.|||+.||++|++-|.+...             ..++.+..+.        ...+..|..+    -...++
T Consensus       205 Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p  284 (359)
T KOG0660|consen  205 YTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANP  284 (359)
T ss_pred             ccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCH
Confidence            69999999999999999999998875421             1223333332        1112222222    146788


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ...+|+++||..||.+|+|+.+.+..
T Consensus       285 ~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  285 LAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HHHHHHHHHhccCccccCCHHHHhcC
Confidence            99999999999999999999998764

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.92  E-value=3.2e-25  Score=217.01  Aligned_cols=148  Identities=24%  Similarity=0.344  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||+|||+.|++ ||||||+||+++.++.+||+|||+++......  .......|+..|+|||++.+..+ 
T Consensus        98 ~~~~~~qi~~~l~~lH~~~iv-HrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (316)
T cd05620          98 ATFYAAEIVCGLQFLHSKGII-YRDLKLDNVMLDRDGHIKIADFGMCKENVFGD--NRASTFCGTPDYIAPEILQGLKY-  173 (316)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ecCCCHHHeEECCCCCEEeCccCCCeecccCC--CceeccCCCcCccCHHHHcCCCC-
Confidence            568899999999999999998 99999999999999999999999976432111  11234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH-HH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR-FV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~-~I  183 (423)
                        +.++|||||||++|||++|..||..  .+..++.+.+....+..|    ..++.++.+++.+||+.||++||++. ++
T Consensus       174 --~~~~DiwslGvil~el~~g~~Pf~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~dP~~R~~~~~~~  245 (316)
T cd05620         174 --TFSVDWWSFGVLLYEMLIGQSPFHG--DDEDELFESIRVDTPHYP----RWITKESKDILEKLFERDPTRRLGVVGNI  245 (316)
T ss_pred             --CcccchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHccCCHHHcCCChHHH
Confidence              8899999999999999999999964  345566666655433222    24688999999999999999999974 55


Q ss_pred             H
Q psy1840         184 H  184 (423)
Q Consensus       184 ~  184 (423)
                      .
T Consensus       246 ~  246 (316)
T cd05620         246 R  246 (316)
T ss_pred             H
Confidence            4

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.92  E-value=3e-25  Score=218.40  Aligned_cols=150  Identities=19%  Similarity=0.266  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++......  .......|++.|+|||.+.+..+ 
T Consensus        97 ~~~~~~qi~~aL~~LH~~~iv-HrDikp~NIll~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  172 (328)
T cd05593          97 TRFYGAEIVSALDYLHSGKIV-YRDLKLENLMLDKDGHIKITDFGLCKEGITDA--ATMKTFCGTPEYLAPEVLEDNDY-  172 (328)
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-ecccCHHHeEECCCCcEEEecCcCCccCCCcc--cccccccCCcCccChhhhcCCCC-
Confidence            568899999999999999998 99999999999999999999999986532211  11234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++|||||||++|||++|+.||..  ....++...+.......|    ..+++++.+++.+||+.||++||     +
T Consensus       173 --~~~~DiwslGvil~elltG~~Pf~~--~~~~~~~~~~~~~~~~~p----~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (328)
T cd05593         173 --GRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEDIKFP----RTLSADAKSLLSGLLIKDPNKRLGGGPDD  244 (328)
T ss_pred             --CccCCccccchHHHHHhhCCCCCCC--CCHHHHHHHhccCCccCC----CCCCHHHHHHHHHHcCCCHHHcCCCCCCC
Confidence              8999999999999999999999964  234455555544332222    35788999999999999999997     7


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       245 ~~~il~h  251 (328)
T cd05593         245 AKEIMRH  251 (328)
T ss_pred             HHHHhcC
Confidence            8887654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.92  E-value=6.4e-25  Score=210.21  Aligned_cols=155  Identities=26%  Similarity=0.472  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc---cEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~---~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      .+.++.||+.|+.|||+++++ ||||||+||+++.++   .+||+|||+++................+..|+|||.+.+.
T Consensus       118 ~~~~~~qi~~~l~~LH~~~iv-H~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  196 (277)
T cd05036         118 LLFCARDVAKGCKYLEENHFI-HRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDG  196 (277)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcC
Confidence            578999999999999999987 999999999998754   6999999998765322211111122334579999999776


Q ss_pred             CCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .+   +.++|||||||++|||++ |..||..  .+..++...+......  . .+..++..+.+++.+||+.+|++||++
T Consensus       197 ~~---~~~~DiwslG~il~el~~~g~~pf~~--~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~i~~cl~~~p~~Rps~  268 (277)
T cd05036         197 IF---TSKTDVWSFGVLLWEIFSLGYMPYPG--RTNQEVMEFVTGGGRL--D-PPKGCPGPVYRIMTDCWQHTPEDRPNF  268 (277)
T ss_pred             Cc---CchhHHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcCCcC--C-CCCCCCHHHHHHHHHHcCCCcccCcCH
Confidence            55   899999999999999996 8999974  3345555555443221  1 123578899999999999999999999


Q ss_pred             HHHHHHHH
Q psy1840         181 RFVHHKLK  188 (423)
Q Consensus       181 ~~I~~~L~  188 (423)
                      .+|++.|+
T Consensus       269 ~~vl~~l~  276 (277)
T cd05036         269 ATILERIQ  276 (277)
T ss_pred             HHHHHHhh
Confidence            99998875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.92  E-value=9.5e-25  Score=205.69  Aligned_cols=155  Identities=28%  Similarity=0.509  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ ||||||+||+++.++.+||+|||++.................+..|+|||.+.+..+ 
T Consensus        96 ~~~~~~qi~~~L~~lH~~~i~-H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  173 (252)
T cd05084          96 LIQMVENAAAGMEYLESKHCI-HRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRY-  173 (252)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCC-
Confidence            578999999999999999998 999999999999999999999999865432211111111122356999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||..  .+.......+.....  +. ....++..+.+++.+||+.+|++||++.++
T Consensus       174 --~~~~Dv~slG~il~e~~~~~~~p~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~~  246 (252)
T cd05084         174 --SSESDVWSFGILLWEAFSLGAVPYAN--LSNQQTREAIEQGVR--LP-CPELCPDAVYRLMERCWEYDPGQRPSFSTV  246 (252)
T ss_pred             --ChHHHHHHHHHHHHHHHhCCCCCccc--cCHHHHHHHHHcCCC--CC-CcccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999997 8888863  334444444444321  11 223578899999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      .+.|+
T Consensus       247 ~~~l~  251 (252)
T cd05084         247 HQELQ  251 (252)
T ss_pred             HHHHh
Confidence            98775

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.92  E-value=3.7e-25  Score=219.86  Aligned_cols=156  Identities=21%  Similarity=0.297  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||++........  ......|+..|+|||.+....  
T Consensus       170 ~~~i~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~  246 (353)
T PLN00034        170 LADVARQILSGIAYLHRRHIV-HRDIKPSNLLINSAKNVKIADFGVSRILAQTMD--PCNSSVGTIAYMSPERINTDLNH  246 (353)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecCCCHHHEEEcCCCCEEEcccccceecccccc--cccccccCccccCcccccccccc
Confidence            468999999999999999998 999999999999999999999999876532211  113456889999999885421  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      ....+.++|||||||++|||++|+.||..... ....+...+....   +......++.++.++|.+||+.||++||++.
T Consensus       247 ~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~  323 (353)
T PLN00034        247 GAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQ---PPEAPATASREFRHFISCCLQREPAKRWSAM  323 (353)
T ss_pred             CcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccC---CCCCCCccCHHHHHHHHHHccCChhhCcCHH
Confidence            11225689999999999999999999974322 1222333332221   1122336788999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       324 ell~h  328 (353)
T PLN00034        324 QLLQH  328 (353)
T ss_pred             HHhcC
Confidence            99874

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.92  E-value=3.5e-25  Score=217.11  Aligned_cols=145  Identities=19%  Similarity=0.323  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||.+.+..+ 
T Consensus        98 ~~~~~~ql~~~L~~lH~~~iv-H~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (320)
T cd05590          98 ARFYAAEITSALMFLHDKGII-YRDLKLDNVLLDHEGHCKLADFGMCKEGIFNG--KTTSTFCGTPDYIAPEILQEMLY-  173 (320)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eCCCCHHHeEECCCCcEEEeeCCCCeecCcCC--CcccccccCccccCHHHHcCCCC-
Confidence            567899999999999999998 99999999999999999999999976432111  11234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                        +.++|||||||++|||++|+.||..  .+..++...+..+....|    ..++.++.+++.+||+.||++||+..
T Consensus       174 --~~~~DiwslG~il~el~~g~~Pf~~--~~~~~~~~~i~~~~~~~~----~~~~~~~~~li~~~L~~dP~~R~~~~  242 (320)
T cd05590         174 --GPSVDWWAMGVLLYEMLCGHAPFEA--ENEDDLFEAILNDEVVYP----TWLSQDAVDILKAFMTKNPTMRLGSL  242 (320)
T ss_pred             --CCccchhhhHHHHHHHhhCCCCCCC--CCHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHcccCHHHCCCCC
Confidence              8899999999999999999999974  345666777766543333    24688999999999999999999973

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.92  E-value=5.2e-25  Score=216.16  Aligned_cols=149  Identities=24%  Similarity=0.382  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||.+.+..+ 
T Consensus       103 ~~~~~~qi~~al~~lH~~~iv-Hrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~-  178 (324)
T cd05589         103 AVFYAACVVLGLQYLHENKIV-YRDLKLDNLLLDTEGFVKIADFGLCKEGMGFG--DRTSTFCGTPEFLAPEVLTETSY-  178 (324)
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-ecCCCHHHeEECCCCcEEeCcccCCccCCCCC--CcccccccCccccCHhHhcCCCC-
Confidence            678999999999999999998 99999999999999999999999976432211  12234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-----  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-----  179 (423)
                        +.++|||||||++|||++|+.||..  .+..++...+..+....|    ..++..+.+++.+||+.||.+||+     
T Consensus       179 --~~~~DiwslG~il~el~~G~~pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~~L~~dP~~R~~~~~~~  250 (324)
T cd05589         179 --TRAVDWWGLGVLIYEMLVGESPFPG--DDEEEVFDSIVNDEVRYP----RFLSREAISIMRRLLRRNPERRLGSGEKD  250 (324)
T ss_pred             --CcccchhhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHhhcCHhHcCCCCCCC
Confidence              8899999999999999999999974  345566666665543333    256889999999999999999994     


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       251 ~~~l~~  256 (324)
T cd05589         251 AEDVKK  256 (324)
T ss_pred             HHHHhh
Confidence            555543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.92  E-value=3e-25  Score=217.56  Aligned_cols=149  Identities=19%  Similarity=0.330  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++.......  .......|+..|+|||++.+..+ 
T Consensus        98 ~~~~~~qi~~aL~~LH~~~iv-HrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (321)
T cd05591          98 SRFYAAEVTLALMFLHRHGVI-YRDLKLDNILLDAEGHCKLADFGMCKEGILNG--VTTTTFCGTPDYIAPEILQELEY-  173 (321)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCCHHHeEECCCCCEEEeecccceecccCC--ccccccccCccccCHHHHcCCCC-
Confidence            568899999999999999988 99999999999999999999999986532221  11234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP------  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP------  178 (423)
                        +.++|||||||++|||++|+.||..  .+..+....+..+....|    ..++.++.+++.+||+.||++||      
T Consensus       174 --~~~~DvwslG~il~el~tg~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~ll~~~L~~dp~~R~~~~~~~  245 (321)
T cd05591         174 --GPSVDWWALGVLMYEMMAGQPPFEA--DNEDDLFESILHDDVLYP----VWLSKEAVSILKAFMTKNPNKRLGCVASQ  245 (321)
T ss_pred             --CCccceechhHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhccCHHHcCCCCCCC
Confidence              8899999999999999999999974  345667777766543333    24678999999999999999999      


Q ss_pred             -CHHHHHH
Q psy1840         179 -DLRFVHH  185 (423)
Q Consensus       179 -t~~~I~~  185 (423)
                       ++.++++
T Consensus       246 ~~~~~~~~  253 (321)
T cd05591         246 GGEDAIKQ  253 (321)
T ss_pred             CCHHHHhc
Confidence             6666654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.92  E-value=3.8e-25  Score=217.16  Aligned_cols=149  Identities=19%  Similarity=0.293  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++.......  .......|++.|+|||.+.+..+ 
T Consensus        97 ~~~~~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  172 (323)
T cd05595          97 ARFYGAEIVSALEYLHSRDVV-YRDIKLENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPEVLEDNDY-  172 (323)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ecCCCHHHEEEcCCCCEEecccHHhccccCCC--CccccccCCcCcCCcccccCCCC-
Confidence            568899999999999999998 99999999999999999999999976432211  11234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++|||||||++|||++|..||..  .+..+....+.......|    ..+++++.+++.+||+.||++||     +
T Consensus       173 --~~~~DiwSlGvil~ell~g~~Pf~~--~~~~~~~~~~~~~~~~~p----~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (323)
T cd05595         173 --GRAVDWWGLGVVMYEMMCGRLPFYN--QDHERLFELILMEEIRFP----RTLSPEAKSLLAGLLKKDPKQRLGGGPSD  244 (323)
T ss_pred             --CchhchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHccCCHHHhCCCCCCC
Confidence              8899999999999999999999964  334555555544332222    35789999999999999999998     7


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       245 ~~~~l~  250 (323)
T cd05595         245 AKEVME  250 (323)
T ss_pred             HHHHHc
Confidence            777765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0196|consensus

Probab=99.92  E-value=6.2e-26  Score=231.69  Aligned_cols=160  Identities=27%  Similarity=0.535  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccC--CccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRR--RKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~g--t~~y~APE~l~~~  101 (423)
                      +-+.++..|+.||.||-+.+.+ ||||..+|||++++-.+|++|||+++.+.+..+... .+..|  ...|+|||.+...
T Consensus       732 QLVgMLrGIAsGMkYLsdm~YV-HRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~y-tt~GGKIPiRWTAPEAIa~R  809 (996)
T KOG0196|consen  732 QLVGMLRGIASGMKYLSDMNYV-HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAY-TTLGGKIPIRWTAPEAIAYR  809 (996)
T ss_pred             hHHHHHHHHHHHhHHHhhcCch-hhhhhhhheeeccceEEEeccccceeecccCCCccc-cccCCccceeecChhHhhhc
Confidence            3578999999999999999998 999999999999999999999999998765542221 22222  3469999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .+   |.++|||||||++||.++ |..||.  .++.++++..+.++-.+.|+   .+||..|.+||..||++|-..||.|
T Consensus       810 KF---TsASDVWSyGIVmWEVmSyGERPYW--dmSNQdVIkaIe~gyRLPpP---mDCP~aL~qLMldCWqkdR~~RP~F  881 (996)
T KOG0196|consen  810 KF---TSASDVWSYGIVMWEVMSYGERPYW--DMSNQDVIKAIEQGYRLPPP---MDCPAALYQLMLDCWQKDRNRRPKF  881 (996)
T ss_pred             cc---CchhhccccceEEEEecccCCCccc--ccchHHHHHHHHhccCCCCC---CCCcHHHHHHHHHHHHHHhhcCCCH
Confidence            55   999999999999999885 899996  68889999999998665553   4899999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy1840         181 RFVHHKLKEMNAG  193 (423)
Q Consensus       181 ~~I~~~L~~i~~~  193 (423)
                      .+|+..|.++-..
T Consensus       882 ~qiV~~lDklIrn  894 (996)
T KOG0196|consen  882 AQIVSTLDKLIRN  894 (996)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999887654

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=8.8e-25  Score=211.31  Aligned_cols=157  Identities=24%  Similarity=0.469  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       131 ~~~i~~~i~~al~~lH~~~i~-H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  208 (295)
T cd05097         131 LLYMAVQIASGMKYLASLNFV-HRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKF-  208 (295)
T ss_pred             HHHHHHHHHHHHHHHHhcCee-ccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCc-
Confidence            578999999999999999998 999999999999999999999999875432221111222344667999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh--CCCCCCCCCCChHHHHHHHhc-----CCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG--RQGPWGHLRMTDEEIITSVTQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt--g~~Pf~~~~~~~~~i~~~i~~-----~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                        +.++|||||||++|+|++  +..||..  .+..+++..+..     +...... ....+++.+.+++.+||+.+|++|
T Consensus       209 --~~~~DvwSlG~~l~el~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~R  283 (295)
T cd05097         209 --TTASDVWAFGVTLWEMFTLCKEQPYSL--LSDEQVIENTGEFFRNQGRQIYLS-QTPLCPSPVFKLMMRCWSRDIKDR  283 (295)
T ss_pred             --CchhhHHHHHHHHHHHHHcCCCCCCcc--cChHHHHHHHHHhhhhccccccCC-CCCCCCHHHHHHHHHHcCCCchhC
Confidence              899999999999999998  4567753  334444444321     1111111 123468899999999999999999


Q ss_pred             CCHHHHHHHHH
Q psy1840         178 PDLRFVHHKLK  188 (423)
Q Consensus       178 Pt~~~I~~~L~  188 (423)
                      |++.+|++.|+
T Consensus       284 Ps~~~i~~~l~  294 (295)
T cd05097         284 PTFNKIHHFLR  294 (295)
T ss_pred             cCHHHHHHHHh
Confidence            99999998875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.92  E-value=1.1e-24  Score=205.89  Aligned_cols=153  Identities=25%  Similarity=0.493  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||++|++ ||||||+||+++.++.+||+|||.+......... ......++..|+|||.+.+..+ 
T Consensus       102 ~~~~~~~i~~~l~~lH~~~i~-H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~-  178 (256)
T cd05114         102 LLSMCQDVCEGMEYLERNSFI-HRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYT-SSSGAKFPVKWSPPEVFNFSKY-  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccccCcceEEEcCCCeEEECCCCCccccCCCcee-ccCCCCCchhhCChhhcccCcc-
Confidence            689999999999999999998 9999999999999999999999998754322211 1122234557999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |+.||..  ....+....+..+....   .+...+..+.+++.+||+.+|++||++.++
T Consensus       179 --~~~~Di~s~G~~l~el~~~g~~p~~~--~~~~~~~~~i~~~~~~~---~~~~~~~~~~~li~~c~~~~p~~Rps~~~l  251 (256)
T cd05114         179 --SSKSDVWSFGVLMWEVFTEGKMPFEK--KSNYEVVEMISRGFRLY---RPKLASMTVYEVMYSCWHEKPEGRPTFAEL  251 (256)
T ss_pred             --chhhhhHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHCCCCCC---CCCCCCHHHHHHHHHHccCCcccCcCHHHH
Confidence              889999999999999999 8899963  34456666666543221   122457889999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++.|
T Consensus       252 ~~~l  255 (256)
T cd05114         252 LRAI  255 (256)
T ss_pred             HHhh
Confidence            8765

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.92  E-value=1.1e-24  Score=205.06  Aligned_cols=154  Identities=29%  Similarity=0.503  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|++|||+++++ ||||||+||+++.++.+||+|||.+................++..|+|||.+....+ 
T Consensus       107 ~~~~~~~l~~al~~lH~~~i~-H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  184 (262)
T cd00192         107 LLSFAIQIAKGMEYLASKKFV-HRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIF-  184 (262)
T ss_pred             HHHHHHHHHHHHHHHHcCCcc-cCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCc-
Confidence            689999999999999999998 999999999999999999999999876543322222234456778999999877644 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||+|+++||+++ |..||...  ...++...+..+..  +.. ...++.++.+++.+||+.+|++||++.++
T Consensus       185 --~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~~~~~~~--~~~-~~~~~~~~~~li~~~l~~~p~~Rps~~~l  257 (262)
T cd00192         185 --TSKSDVWSFGVLLWEIFTLGATPYPGL--SNEEVLEYLRKGYR--LPK-PEYCPDELYELMLSCWQLDPEDRPTFSEL  257 (262)
T ss_pred             --chhhccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHcCCC--CCC-CccCChHHHHHHHHHccCCcccCcCHHHH
Confidence              899999999999999999 58999753  55667777765322  221 23568999999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++.|
T Consensus       258 ~~~l  261 (262)
T cd00192         258 VERL  261 (262)
T ss_pred             HHhh
Confidence            8876

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.92  E-value=6.2e-25  Score=216.43  Aligned_cols=160  Identities=28%  Similarity=0.447  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.|++.||.|||++|++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       136 ~~~~~~qi~~al~~LH~~giv-H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  213 (334)
T cd05100         136 LVSCAYQVARGMEYLASQKCI-HRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVY-  213 (334)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCc-
Confidence            578999999999999999998 999999999999999999999999875433221111122234467999999977655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||..  .+..++...+..+..  +. ....++.++.+++.+||+.+|++||++.++
T Consensus       214 --~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~li~~cl~~~p~~Rps~~el  286 (334)
T cd05100         214 --THQSDVWSFGVLLWEIFTLGGSPYPG--IPVEELFKLLKEGHR--MD-KPANCTHELYMIMRECWHAVPSQRPTFKQL  286 (334)
T ss_pred             --CchhhhHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCC--CC-CCCCCCHHHHHHHHHHcccChhhCcCHHHH
Confidence              889999999999999998 7888864  345666666654322  11 123578899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      +..|+.+...
T Consensus       287 l~~l~~~~~~  296 (334)
T cd05100         287 VEDLDRVLTV  296 (334)
T ss_pred             HHHHHHHhhh
Confidence            9999888653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.92  E-value=1.1e-24  Score=207.89  Aligned_cols=155  Identities=28%  Similarity=0.459  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|++|||+.|++ ||||||+||+++.++.+||+|||++......   ........+..|+|||.+....+ 
T Consensus       114 ~~~~~~~i~~al~~lH~~~i~-H~dikp~nili~~~~~~kl~dfgl~~~~~~~---~~~~~~~~~~~y~apE~~~~~~~-  188 (270)
T cd05047         114 LLHFAADVARGMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVY-  188 (270)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecccccceEEEcCCCeEEECCCCCccccchh---hhccCCCCccccCChHHHccCCC-
Confidence            679999999999999999998 9999999999999999999999997532111   11111223456999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||..  .+..+....+..+..  +.. ...++.++.+++.+||..+|.+||++.++
T Consensus       189 --~~~~Di~slG~il~el~~~g~~pf~~--~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~li~~~l~~~p~~Rps~~~i  261 (270)
T cd05047         189 --TTNSDVWSYGVLLWEIVSLGGTPYCG--MTCAELYEKLPQGYR--LEK-PLNCDDEVYDLMRQCWREKPYERPSFAQI  261 (270)
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCccc--cCHHHHHHHHhCCCC--CCC-CCcCCHHHHHHHHHHcccChhhCCCHHHH
Confidence              889999999999999997 9999964  344455555544321  111 23567899999999999999999999999


Q ss_pred             HHHHHHHh
Q psy1840         184 HHKLKEMN  191 (423)
Q Consensus       184 ~~~L~~i~  191 (423)
                      +..|..+.
T Consensus       262 l~~l~~~~  269 (270)
T cd05047         262 LVSLNRML  269 (270)
T ss_pred             HHHHHHhh
Confidence            99987763

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.92  E-value=6.7e-25  Score=210.89  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++........ .......+++.|+|||++.+..+ 
T Consensus       102 ~~~~~~qi~~~L~~lH~~~i~-H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~-  178 (287)
T cd07848         102 VRSYIYQLIKAIHWCHKNDIV-HRDIKPENLLISHNDVLKLCDFGFARNLSEGSN-ANYTEYVATRWYRSPELLLGAPY-  178 (287)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEEcCCCcEEEeeccCccccccccc-ccccccccccccCCcHHHcCCCC-
Confidence            568999999999999999998 999999999999999999999999876532221 11233467889999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC---------------C----CCCCCCC---------CC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG---------------S----GLRPDTS---------SL  156 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~---------------~----~~~p~~~---------~~  156 (423)
                        +.++|||||||++|||++|+.||....  ..+....+...               .    ...|...         ..
T Consensus       179 --~~~~DiwslGvil~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (287)
T cd07848         179 --GKAVDMWSVGCILGELSDGQPLFPGES--EIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLG  254 (287)
T ss_pred             --CCchhHHhHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhc
Confidence              889999999999999999999997532  11111111100               0    0001000         11


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .++.++.+++++||+.||++|||+.++++
T Consensus       255 ~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         255 ILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             ccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            35778999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.92  E-value=5e-25  Score=216.24  Aligned_cols=144  Identities=22%  Similarity=0.372  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||++.......  .......|++.|+|||++.+..+ 
T Consensus       103 ~~~~~~qi~~al~~lH~~~iv-H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  178 (324)
T cd05587         103 AVFYAAEIAIGLFFLHSKGII-YRDLKLDNVMLDAEGHIKIADFGMCKENIFGG--KTTRTFCGTPDYIAPEIIAYQPY-  178 (324)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ecCCCHHHeEEcCCCCEEEeecCcceecCCCC--CceeeecCCccccChhhhcCCCC-
Confidence            578899999999999999998 99999999999999999999999976432111  11234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|||||||++|||++|+.||..  ....+....+.......|    ..+++++.+++.+||..||.+|++.
T Consensus       179 --~~~~DiwslGvil~elltG~~pf~~--~~~~~~~~~i~~~~~~~~----~~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         179 --GKSVDWWAFGVLLYEMLAGQPPFDG--EDEDELFQSIMEHNVSYP----KSLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             --CcccchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhhcCHHHcCCC
Confidence              8899999999999999999999974  345666666665433222    2578899999999999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.92  E-value=1.2e-24  Score=207.19  Aligned_cols=160  Identities=28%  Similarity=0.490  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC-
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL-  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-  103 (423)
                      ...++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||++................++..|+|||++.+... 
T Consensus       102 ~~~~~~qi~~al~~lH~~~i~-H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  180 (269)
T cd05087         102 LQRMACEIALGLLHLHKNNFI-HSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGN  180 (269)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhcccccc
Confidence            467899999999999999988 999999999999999999999999865432221111223456778999999864321 


Q ss_pred             ---CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCC--CCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         104 ---PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL--RPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       104 ---~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~--~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                         ...+.++|+||||+++|||++ |..||...  ...+...........  ..+......+..+.+++++|| .+|++|
T Consensus       181 ~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~R  257 (269)
T cd05087         181 LLVVDQTKESNVWSLGVTIWELFELGSQPYRHL--SDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQR  257 (269)
T ss_pred             ccccCCCccchhHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccC
Confidence               124789999999999999996 99999643  223332222221111  111112346788999999999 689999


Q ss_pred             CCHHHHHHHHH
Q psy1840         178 PDLRFVHHKLK  188 (423)
Q Consensus       178 Pt~~~I~~~L~  188 (423)
                      ||+.+|+..|.
T Consensus       258 pt~~~l~~~l~  268 (269)
T cd05087         258 PSAEEVHLLLS  268 (269)
T ss_pred             CCHHHHHHHhc
Confidence            99999987763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.92  E-value=3.5e-25  Score=217.94  Aligned_cols=147  Identities=20%  Similarity=0.245  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++.......     ....|++.|+|||.+.+..+ 
T Consensus       120 ~~~~~~qi~~aL~~LH~~~iv-H~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~-  192 (329)
T PTZ00263        120 AKFYHAELVLAFEYLHSKDII-YRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT-----FTLCGTPEYLAPEVIQSKGH-  192 (329)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCCCHHHEEECCCCCEEEeeccCceEcCCCc-----ceecCChhhcCHHHHcCCCC-
Confidence            457889999999999999998 99999999999999999999999987543221     23568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-----  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-----  179 (423)
                        +.++|||||||++|||++|..||..  ....+..+.+..+....|    ..++..+.+++.+||+.||.+||+     
T Consensus       193 --~~~~DiwslG~il~elltg~~pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~~L~~dP~~R~~~~~~~  264 (329)
T PTZ00263        193 --GKAVDWWTMGVLLYEFIAGYPPFFD--DTPFRIYEKILAGRLKFP----NWFDGRARDLVKGLLQTDHTKRLGTLKGG  264 (329)
T ss_pred             --CCcceeechHHHHHHHHcCCCCCCC--CCHHHHHHHHhcCCcCCC----CCCCHHHHHHHHHHhhcCHHHcCCCCCCC
Confidence              8899999999999999999999964  345566666666543322    246789999999999999999996     


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.+++..
T Consensus       265 ~~~ll~h  271 (329)
T PTZ00263        265 VADVKNH  271 (329)
T ss_pred             HHHHhcC
Confidence            5666543

>KOG0616|consensus

Probab=99.92  E-value=3.5e-25  Score=204.62  Aligned_cols=144  Identities=21%  Similarity=0.326  Sum_probs=125.7

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcc
Q psy1840          18 PFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL   97 (423)
Q Consensus        18 ~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~   97 (423)
                      +|+.|.. .-.+.||+.|++|||+.+|+ +|||||+|||+|.+|.+||+|||+++...+.     +.+.+||+.|+|||+
T Consensus       140 rF~e~~a-rFYAAeivlAleylH~~~ii-YRDLKPENiLlD~~G~iKitDFGFAK~v~~r-----T~TlCGTPeYLAPEi  212 (355)
T KOG0616|consen  140 RFSEPHA-RFYAAEIVLALEYLHSLDII-YRDLKPENLLLDQNGHIKITDFGFAKRVSGR-----TWTLCGTPEYLAPEI  212 (355)
T ss_pred             CCCchhH-HHHHHHHHHHHHHHHhcCee-eccCChHHeeeccCCcEEEEeccceEEecCc-----EEEecCCccccChHH
Confidence            3555443 35789999999999999998 9999999999999999999999999876433     467899999999999


Q ss_pred             ccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840          98 LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus        98 l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                      +..+.+   +.++|-|||||++|||+.|..||..  .++-.+.++|..++...|..    .++++.+|+...++.|-.+|
T Consensus       213 i~sk~y---nkavDWWalGVLIYEMlaG~pPF~~--~~~~~iY~KI~~~~v~fP~~----fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  213 IQSKGY---NKAVDWWALGVLIYEMLAGYPPFYD--DNPIQIYEKILEGKVKFPSY----FSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             hhcCCC---CcchhHHHHHHHHHHHHcCCCCCcC--CChHHHHHHHHhCcccCCcc----cCHHHHHHHHHHHhhhhHhh
Confidence            998876   8999999999999999999999974  44578899999988776653    67899999999999999988

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.92  E-value=9.8e-25  Score=212.09  Aligned_cols=162  Identities=28%  Similarity=0.456  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|++|||+.|++ ||||||+||+++.++.+||+|||++......   ........+..|+|||.+.+..+ 
T Consensus       126 ~~~~~~qi~~al~~LH~~gi~-H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~-  200 (303)
T cd05088         126 LLHFAADVARGMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVY-  200 (303)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccccchheEEecCCCcEEeCccccCcccchh---hhcccCCCcccccCHHHHhccCC-
Confidence            678999999999999999998 9999999999999999999999997532111   11111223456999998876544 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++||+++ |..||..  .+..+....+..+.  .+. ....+++++.+++.+||+.+|++||++.++
T Consensus       201 --~~~~Di~slG~il~ellt~g~~p~~~--~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  273 (303)
T cd05088         201 --TTNSDVWSYGVLLWEIVSLGGTPYCG--MTCAELYEKLPQGY--RLE-KPLNCDDEVYDLMRQCWREKPYERPSFAQI  273 (303)
T ss_pred             --cccccchhhhhHHHHHHhcCCCCccc--CChHHHHHHHhcCC--cCC-CCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999998 9999964  33345555554331  111 123467899999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCh
Q psy1840         184 HHKLKEMNAGLKANI  198 (423)
Q Consensus       184 ~~~L~~i~~~~~~~~  198 (423)
                      +..+..+....+...
T Consensus       274 l~~l~~~~~~~~~~~  288 (303)
T cd05088         274 LVSLNRMLEERKTYV  288 (303)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999988876654433

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.92  E-value=4.1e-25  Score=216.76  Aligned_cols=144  Identities=22%  Similarity=0.379  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++......  .......|++.|+|||++.+..+ 
T Consensus       103 ~~~~~~qi~~aL~~LH~~~iv-HrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  178 (323)
T cd05616         103 AVFYAAEIAIGLFFLHSKGII-YRDLKLDNVMLDSEGHIKIADFGMCKENMWDG--VTTKTFCGTPDYIAPEIIAYQPY-  178 (323)
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-ecCCCHHHeEECCCCcEEEccCCCceecCCCC--CccccCCCChhhcCHHHhcCCCC-
Confidence            678999999999999999988 99999999999999999999999986432111  12234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|||||||++|||++|+.||..  ....++...+.......|    ...+.++.+++.+|++.+|++|++.
T Consensus       179 --~~~~DiwSlGvil~elltg~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         179 --GKSVDWWAFGVLLYEMLAGQAPFEG--EDEDELFQSIMEHNVAYP----KSMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             --CCccchhchhHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCC----CcCCHHHHHHHHHHcccCHHhcCCC
Confidence              8999999999999999999999974  345666666665443333    2578899999999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.92  E-value=6.4e-25  Score=215.46  Aligned_cols=149  Identities=21%  Similarity=0.322  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||++.+... 
T Consensus       102 ~~~~~~qi~~~l~~lH~~~iv-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  177 (323)
T cd05584         102 ACFYLSEISLALEHLHQQGII-YRDLKPENILLDAQGHVKLTDFGLCKESIHEG--TVTHTFCGTIEYMAPEILMRSGH-  177 (323)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHeEECCCCCEEEeeCcCCeecccCC--CcccccCCCccccChhhccCCCC-
Confidence            457889999999999999998 99999999999999999999999986432221  11234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++|||||||++|||++|+.||..  .........+..+....|    ..+++.+.+++.+||+.+|++||     +
T Consensus       178 --~~~~DiwslG~il~ell~G~~pf~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~R~~~~~~~  249 (323)
T cd05584         178 --GKAVDWWSLGALMYDMLTGAPPFTA--ENRKKTIDKILKGKLNLP----PYLTPEARDLLKKLLKRNPSSRLGAGPGD  249 (323)
T ss_pred             --CCcceecccHHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHcccCHhHcCCCCCCC
Confidence              7899999999999999999999974  334555566655433222    24678999999999999999999     7


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      ..++++
T Consensus       250 ~~~l~~  255 (323)
T cd05584         250 AAEVQS  255 (323)
T ss_pred             HHHHhc
Confidence            777655

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0194|consensus

Probab=99.92  E-value=1.9e-25  Score=224.22  Aligned_cols=162  Identities=26%  Similarity=0.461  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      +++.++.+.+.||+|||++++| ||||-.+|||++.++.+||+|||+++... . .........-...|+|||.+..+.+
T Consensus       263 ek~~~~~~AA~Gl~YLh~k~~I-HRDIAARNcL~~~~~~vKISDFGLs~~~~-~-~~~~~~~~klPirWLAPEtl~~~~~  339 (474)
T KOG0194|consen  263 EKLRFCYDAARGLEYLHSKNCI-HRDIAARNCLYSKKGVVKISDFGLSRAGS-Q-YVMKKFLKKLPIRWLAPETLNTGIF  339 (474)
T ss_pred             HHHHHHHHHHhHHHHHHHCCCc-chhHhHHHheecCCCeEEeCccccccCCc-c-eeeccccccCcceecChhhhccCcc
Confidence            4899999999999999999999 99999999999999999999999987543 1 1111111123456999999988755


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++||+++ |..||.  .+...++...+.......+ . +...+..+..++.+||..+|++||+|.+
T Consensus       340 ---s~kTDV~sfGV~~~Eif~~g~~Py~--g~~~~~v~~kI~~~~~r~~-~-~~~~p~~~~~~~~~c~~~~p~~R~tm~~  412 (474)
T KOG0194|consen  340 ---SFKTDVWSFGVLLWEIFENGAEPYP--GMKNYEVKAKIVKNGYRMP-I-PSKTPKELAKVMKQCWKKDPEDRPTMST  412 (474)
T ss_pred             ---ccccchhheeeeEEeeeccCCCCCC--CCCHHHHHHHHHhcCccCC-C-CCCCHHHHHHHHHHhccCChhhccCHHH
Confidence               999999999999999998 788997  4566788888844322222 1 2257889999999999999999999999


Q ss_pred             HHHHHHHHhhhcC
Q psy1840         183 VHHKLKEMNAGLK  195 (423)
Q Consensus       183 I~~~L~~i~~~~~  195 (423)
                      +.+.++.+.....
T Consensus       413 i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  413 IKKKLEALEKKKE  425 (474)
T ss_pred             HHHHHHHHHhccc
Confidence            9999998876543

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.92  E-value=1.3e-24  Score=207.14  Aligned_cols=157  Identities=25%  Similarity=0.476  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|++|||+++++ ||||||+||+++.++.+||+|||+++...............++..|++||.+.+... 
T Consensus       115 ~~~~~~~i~~~l~~lH~~~i~-H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~-  192 (273)
T cd05074         115 LVRFMIDIASGMEYLSSKNFI-HRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVY-  192 (273)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-ecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCcc-
Confidence            578999999999999999987 999999999999999999999999875432221111122344567999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |+.||..  ....++...+..+.....   ...++..+.+++.+||+.+|++||++.++
T Consensus       193 --~~~sDi~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~p~~Rps~~~~  265 (273)
T cd05074         193 --TTHSDVWAFGVTMWEIMTRGQTPYAG--VENSEIYNYLIKGNRLKQ---PPDCLEDVYELMCQCWSPEPKCRPSFQHL  265 (273)
T ss_pred             --chhhhhHHHHHHHHHHhhCCCCCCCC--CCHHHHHHHHHcCCcCCC---CCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              789999999999999998 7888864  334455555554432221   13567899999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      ...|+.+
T Consensus       266 ~~~l~~~  272 (273)
T cd05074         266 RDQLELI  272 (273)
T ss_pred             HHHHHhh
Confidence            9998764

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.92  E-value=4.4e-25  Score=214.31  Aligned_cols=157  Identities=17%  Similarity=0.212  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......  .......+++.|+|||++.+..
T Consensus       103 ~~~~~~~~qi~~al~~lH~~~iv-H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~  179 (303)
T cd07869         103 ENVKLFLFQLLRGLSYIHQRYIL-HRDLKPQNLLISDTGELKLADFGLARAKSVPS--HTYSNEVVTLWYRPPDVLLGST  179 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEECCCCCEEECCCCcceeccCCC--ccCCCCcccCCCCChHHHcCCC
Confidence            33578899999999999999988 99999999999999999999999986543221  1123456788999999986543


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--CC-------------CCCCCC-------------C
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--GS-------------GLRPDT-------------S  154 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--~~-------------~~~p~~-------------~  154 (423)
                        ..+.++||||+||++|||++|..||.+... ..+.+..+..  +.             ...+..             .
T Consensus       180 --~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (303)
T cd07869         180 --EYSTCLDMWGVGCIFVEMIQGVAAFPGMKD-IQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWN  256 (303)
T ss_pred             --CCCcHHHHHHHHHHHHHHHhCCCCCCCCcc-HHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhh
Confidence              237889999999999999999999975432 2222222211  00             000000             0


Q ss_pred             CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       155 ~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ....+..+.+++.+||+.||.+|||+.++++
T Consensus       257 ~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         257 KLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             ccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence            1123467889999999999999999999876

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.92  E-value=1.5e-24  Score=207.54  Aligned_cols=174  Identities=17%  Similarity=0.329  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+++++ |+||+|+||+++.++.++|+|||++........  ......++..|+|||.+.+..+ 
T Consensus       103 ~~~~~~~i~~~l~~lH~~~iv-H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~-  178 (277)
T cd06642         103 IATILREILKGLDYLHSERKI-HRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIKQSAY-  178 (277)
T ss_pred             HHHHHHHHHHHHHHHhcCCee-ccCCChheEEEeCCCCEEEccccccccccCcch--hhhcccCcccccCHHHhCcCCC-
Confidence            568899999999999999998 999999999999999999999999876533211  1123456788999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||+++||+++|..||...  ........+..+.  .+. ....++.++.+++.+||+.+|++||++.+++
T Consensus       179 --~~~~Dv~slG~il~el~tg~~p~~~~--~~~~~~~~~~~~~--~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  251 (277)
T cd06642         179 --DFKADIWSLGITAIELAKGEPPNSDL--HPMRVLFLIPKNS--PPT-LEGQYSKPFKEFVEACLNKDPRFRPTAKELL  251 (277)
T ss_pred             --chhhhHHHHHHHHHHHHhCCCCCccc--chhhHHhhhhcCC--CCC-CCcccCHHHHHHHHHHccCCcccCcCHHHHH
Confidence              88999999999999999999998632  2233333332221  222 2235788999999999999999999999999


Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHHh
Q psy1840         185 HKLKEMNAGLKANIFDNMLAIMEKY  209 (423)
Q Consensus       185 ~~L~~i~~~~~~~~~d~~~~~~e~~  209 (423)
                      ..-.-.....+.+...++..++++|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~  276 (277)
T cd06642         252 KHKFITRYTKKTSFLTELIDRYKRW  276 (277)
T ss_pred             HhHHHHHHhhhHHHHHHHHHHhhcc
Confidence            8654444455667777787777665

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.92  E-value=1.3e-24  Score=219.61  Aligned_cols=159  Identities=21%  Similarity=0.377  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       239 ~~~~~~qi~~aL~~LH~~~iv-H~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  316 (400)
T cd05105         239 LLSFTYQVARGMEFLASKNCV-HRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLY-  316 (400)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-CCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCC-
Confidence            578999999999999999988 999999999999999999999999875533222222223345677999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||.... ....+...+..+.  ++. ....++..+.+++.+||+.+|++||++.+|
T Consensus       317 --~~~~DiwSlGvil~ellt~g~~P~~~~~-~~~~~~~~~~~~~--~~~-~~~~~~~~l~~li~~cl~~dP~~RPt~~~l  390 (400)
T cd05105         317 --TTLSDVWSYGILLWEIFSLGGTPYPGMI-VDSTFYNKIKSGY--RMA-KPDHATQEVYDIMVKCWNSEPEKRPSFLHL  390 (400)
T ss_pred             --CchhhHHHHHHHHHHHHHCCCCCCcccc-hhHHHHHHHhcCC--CCC-CCccCCHHHHHHHHHHCccCHhHCcCHHHH
Confidence              889999999999999997 889986432 2233444444432  222 123578899999999999999999999999


Q ss_pred             HHHHHHHh
Q psy1840         184 HHKLKEMN  191 (423)
Q Consensus       184 ~~~L~~i~  191 (423)
                      .+.|+++.
T Consensus       391 ~~~l~~l~  398 (400)
T cd05105         391 SDIVESLL  398 (400)
T ss_pred             HHHHHHHc
Confidence            99988764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=5.7e-25  Score=216.60  Aligned_cols=151  Identities=21%  Similarity=0.232  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.....     ......|++.|+|||++.+..+ 
T Consensus       103 ~~~~~~qi~~~l~~lH~~~iv-H~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~-  175 (333)
T cd05600         103 ARFYMAEMFEAVDALHELGYI-HRDLKPENFLIDASGHIKLTDFGLSKGIVT-----YANSVVGSPDYMAPEVLRGKGY-  175 (333)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCCHHHEEECCCCCEEEEeCcCCccccc-----ccCCcccCccccChhHhcCCCC-
Confidence            567899999999999999998 999999999999999999999999875432     2234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC--CCCCC--CCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG--LRPDT--SSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~--~~p~~--~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|||||||++|||++|..||..  .+..+....+.....  ..|..  ....++.++.+++.+||..+|++||++
T Consensus       176 --~~~~DvwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~  251 (333)
T cd05600         176 --DFTVDYWSLGCMLYEFLCGFPPFSG--STPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSL  251 (333)
T ss_pred             --CCccceecchHHHhhhhhCCCCCCC--CCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCH
Confidence              8999999999999999999999974  344555555443221  11111  112568899999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       252 ~~ll~h  257 (333)
T cd05600         252 EDIKNH  257 (333)
T ss_pred             HHHHhC
Confidence            998764

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG4257|consensus

Probab=99.92  E-value=2.4e-25  Score=222.34  Aligned_cols=168  Identities=20%  Similarity=0.412  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      -+..+.||+.+|.|||++.++ ||||..+|||+.+...|||+|||+++...+....... ...-..-|||||.+.-..+ 
T Consensus       493 L~ly~~Qi~talaYLeSkrfV-HRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS-~~kLPIKWmaPESINfRrF-  569 (974)
T KOG4257|consen  493 LTLYCYQICTALAYLESKRFV-HRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKAS-RGKLPIKWMAPESINFRRF-  569 (974)
T ss_pred             HHHHHHHHHHHHHHHHhhchh-hhhhhhhheeecCcceeeecccchhhhccccchhhcc-ccccceeecCccccchhcc-
Confidence            367899999999999999998 9999999999999999999999999988765544322 2233445999999876655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||-||+.+||++. |..||.+..  ..+++-.+++|..  ++.+ .+||+.+..||.+||+++|.+||+|.+|
T Consensus       570 --TtASDVWMFgVCmWEIl~lGvkPfqgvk--NsDVI~~iEnGeR--lP~P-~nCPp~LYslmskcWayeP~kRPrftei  642 (974)
T KOG4257|consen  570 --TTASDVWMFGVCMWEILSLGVKPFQGVK--NSDVIGHIENGER--LPCP-PNCPPALYSLMSKCWAYEPSKRPRFTEI  642 (974)
T ss_pred             --cchhhHHHHHHHHHHHHHhcCCcccccc--ccceEEEecCCCC--CCCC-CCCChHHHHHHHHHhccCcccCCcHHHH
Confidence              999999999999999995 889998543  3456666776643  3332 3799999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCChHHHH
Q psy1840         184 HHKLKEMNAGLKANIFDNM  202 (423)
Q Consensus       184 ~~~L~~i~~~~~~~~~d~~  202 (423)
                      ...|.++...-+.+..+++
T Consensus       643 ~~~lsdv~qeek~~~~Eq~  661 (974)
T KOG4257|consen  643 KAILSDVLQEEKINSSEQL  661 (974)
T ss_pred             HHHHHHHHHHhhhhhHHHH
Confidence            9999998876666555554

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.92  E-value=1.3e-24  Score=205.87  Aligned_cols=153  Identities=25%  Similarity=0.500  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.||+.||.|||+.|++ |+||||+||+++.++.+||+|||.++....... .......++..|+|||.+.+..+ 
T Consensus       102 ~~~~~~~i~~~l~~lH~~~i~-H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~y~~pe~~~~~~~-  178 (256)
T cd05113         102 LLEMCKDVCEGMAYLESKQFI-HRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPPEVLLYSKF-  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccccCcceEEEcCCCCEEECCCccceecCCCce-eecCCCccChhhCCHHHHhcCcc-
Confidence            689999999999999999998 999999999999999999999999875432221 11122334567999999976554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||..  ....++...+..+....   .....+..+.+++.+||+.+|++||++.+|
T Consensus       179 --~~~~Di~slG~~l~~l~~~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l  251 (256)
T cd05113         179 --SSKSDVWAFGVLMWEVYSLGKMPYER--FNNSETVEKVSQGLRLY---RPHLASEKVYAIMYSCWHEKAEERPTFQQL  251 (256)
T ss_pred             --cchhHHHHHHHHHHHHhcCCCCCcCc--CCHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence              889999999999999998 8899864  33455666665543221   122467899999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      +..+
T Consensus       252 l~~~  255 (256)
T cd05113         252 LSSI  255 (256)
T ss_pred             HHhh
Confidence            8765

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.92  E-value=1.8e-24  Score=204.91  Aligned_cols=155  Identities=30%  Similarity=0.528  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+++++ ||||||+||+++.++.+||+|||++......... ......++..|+|||.+.+... 
T Consensus       104 ~~~~~~~l~~al~~lH~~~i~-H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~-  180 (260)
T cd05070         104 LVDMAAQVAAGMAYIERMNYI-HRDLRSANILVGDGLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRF-  180 (260)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCccceEEEeCCceEEeCCceeeeeccCcccc-cccCCCCCccccChHHHhcCCC-
Confidence            679999999999999999988 9999999999999999999999998754322211 1122234567999998876544 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|+||||+++||+++ |..||..  ....+....+..+..  +.. ....+..+.+++.+||+.+|++|||+.++
T Consensus       181 --~~~~Di~slG~~l~~l~~~g~~p~~~--~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~li~~~l~~~p~~Rpt~~~l  253 (260)
T cd05070         181 --TIKSDVWSFGILLTELVTKGRVPYPG--MNNREVLEQVERGYR--MPC-PQDCPISLHELMLQCWKKDPEERPTFEYL  253 (260)
T ss_pred             --cchhhhHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCC--CCC-CCcCCHHHHHHHHHHcccCcccCcCHHHH
Confidence              889999999999999999 8889864  344556666654321  222 23578899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|+.
T Consensus       254 ~~~l~~  259 (260)
T cd05070         254 QSFLED  259 (260)
T ss_pred             HHHHhc
Confidence            988764

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.92  E-value=6.5e-25  Score=211.73  Aligned_cols=154  Identities=19%  Similarity=0.210  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||+.|++ ||||||+||+++.++.+||+|||+++.......  ......+++.|+|||.+.+..  
T Consensus       105 ~~~~~~qi~~aL~~LH~~~iv-H~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~--  179 (288)
T cd07871         105 VKIFMFQLLRGLSYCHKRKIL-HRDLKPQNLLINEKGELKLADFGLARAKSVPTK--TYSNEVVTLWYRPPDVLLGST--  179 (288)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEEECCCCCEEECcCcceeeccCCCc--cccCceecccccChHHhcCCc--
Confidence            578899999999999999998 999999999999999999999999875432211  113345788899999987533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-------------------CCCCC-------CCCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-------------------LRPDT-------SSLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-------------------~~p~~-------~~~~~  158 (423)
                      .++.++||||+||++|||++|+.||...  +..+.+..+.....                   ..|..       .....
T Consensus       180 ~~~~~~DiwslG~~l~~l~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (288)
T cd07871         180 EYSTPIDMWGVGCILYEMATGRPMFPGS--TVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRL  257 (288)
T ss_pred             ccCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCC
Confidence            2388999999999999999999999743  22332222211000                   00100       01245


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +.++.+++.+|++.||.+|||+.++++
T Consensus       258 ~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         258 DTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             CHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            778999999999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.92  E-value=5.7e-25  Score=216.38  Aligned_cols=153  Identities=19%  Similarity=0.271  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++....... .......|+..|+|||.+.+..  
T Consensus       107 ~~~~~~qi~~~l~~lH~~~iv-HrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~--  182 (332)
T cd05614         107 VRFYSGEIILALEHLHKLGIV-YRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK-ERTYSFCGTIEYMAPEIIRGKG--  182 (332)
T ss_pred             HHHHHHHHHHHHHHHHHCCcE-ecCCCHHHeEECCCCCEEEeeCcCCccccccCC-CccccccCCccccCHHHhcCCC--
Confidence            567889999999999999998 999999999999999999999999875432221 1223456899999999987643  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP----  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP----  178 (423)
                      ..+.++|||||||++|||++|..||....  .....+...+.......|    ..+++.+.+++.+||+.||++||    
T Consensus       183 ~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~dp~~R~~~~~  258 (332)
T cd05614         183 GHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFP----SFIGPEAQDLLHKLLRKDPKKRLGAGP  258 (332)
T ss_pred             CCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHcCCCHHHcCCCCC
Confidence            23789999999999999999999996432  233444444444332222    24788999999999999999999    


Q ss_pred             -CHHHHHH
Q psy1840         179 -DLRFVHH  185 (423)
Q Consensus       179 -t~~~I~~  185 (423)
                       ++.++++
T Consensus       259 ~~~~~~l~  266 (332)
T cd05614         259 QGASEIKE  266 (332)
T ss_pred             CCHHHHHc
Confidence             6667654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0200|consensus

Probab=99.92  E-value=1e-24  Score=230.75  Aligned_cols=159  Identities=28%  Similarity=0.459  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccc-cCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKL-RRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~-~gt~~y~APE~l~~~~  102 (423)
                      +-++++.||+.||+||++++++ ||||..+|||+..+..+||+|||+++.............. .-...|||||.+....
T Consensus       419 dLlsfa~QIa~GMe~L~~~~~v-HRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~  497 (609)
T KOG0200|consen  419 DLLSFAYQIANGMEYLASVPCV-HRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRV  497 (609)
T ss_pred             HHHHHHHHHHHHHHHHhhCCcc-chhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCc
Confidence            3589999999999999999988 9999999999999999999999999854433332211111 1123499999998855


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++|||||||++|||++ |..||.+.. ...++.+.+..|.....   +..|+.++.++|+.||+.+|++||+|.
T Consensus       498 f---t~kSDVWSfGI~L~EifsLG~~PYp~~~-~~~~l~~~l~~G~r~~~---P~~c~~eiY~iM~~CW~~~p~~RP~F~  570 (609)
T KOG0200|consen  498 F---TSKSDVWSFGILLWEIFTLGGTPYPGIP-PTEELLEFLKEGNRMEQ---PEHCSDEIYDLMKSCWNADPEDRPTFS  570 (609)
T ss_pred             c---cccchhhHHHHHHHHHhhCCCCCCCCCC-cHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHhCCCcccCCCHH
Confidence            5   999999999999999998 778997522 25667777877754332   236899999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1840         182 FVHHKLKEM  190 (423)
Q Consensus       182 ~I~~~L~~i  190 (423)
                      ++.+.+...
T Consensus       571 ~~~~~~~~~  579 (609)
T KOG0200|consen  571 ECVEFFEKH  579 (609)
T ss_pred             HHHHHHHHH
Confidence            999998874

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.92  E-value=1.6e-24  Score=205.43  Aligned_cols=155  Identities=28%  Similarity=0.534  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......... ......++..|+|||...+... 
T Consensus       104 ~~~~~~~l~~al~~lH~~~i~-H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~Pe~~~~~~~-  180 (260)
T cd05069         104 LVDMAAQIADGMAYIERMNYI-HRDLRAANILVGDNLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRF-  180 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-ecccCcceEEEcCCCeEEECCCccceEccCCccc-ccCCCccchhhCCHHHhccCCc-
Confidence            578999999999999999987 9999999999999999999999998765322211 1122345567999998876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||.+  ....+....+..+.  .+.. ....+..+.+++.+||..||++||++.+|
T Consensus       181 --~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~i  253 (260)
T cd05069         181 --TIKSDVWSFGILLTELVTKGRVPYPG--MVNREVLEQVERGY--RMPC-PQGCPESLHELMKLCWKKDPDERPTFEYI  253 (260)
T ss_pred             --ChHHHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCC--CCCC-CcccCHHHHHHHHHHccCCcccCcCHHHH
Confidence              889999999999999999 8889974  34455555555432  1211 23578899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|++
T Consensus       254 ~~~l~~  259 (260)
T cd05069         254 QSFLED  259 (260)
T ss_pred             HHHHhc
Confidence            998864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.92  E-value=7.2e-25  Score=214.58  Aligned_cols=148  Identities=24%  Similarity=0.339  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||++|++ ||||||+||+++.++.+||+|||++.......  .......|+..|+|||++.+..+ 
T Consensus        98 ~~~~~~qi~~al~~LH~~~iv-Hrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (316)
T cd05619          98 ATFYAAEIICGLQFLHSKGIV-YRDLKLDNILLDTDGHIKIADFGMCKENMLGD--AKTCTFCGTPDYIAPEILLGQKY-  173 (316)
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-eCCCCHHHEEECCCCCEEEccCCcceECCCCC--CceeeecCCccccCHHHHcCCCC-
Confidence            568899999999999999998 99999999999999999999999976432111  11234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH-HH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR-FV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~-~I  183 (423)
                        +.++|||||||++|||++|..||..  .+..++...+....+..|    ..++.++.+++.+||+.||++||++. ++
T Consensus       174 --~~~~DvwslG~il~el~~G~~pf~~--~~~~~~~~~i~~~~~~~~----~~~~~~~~~li~~~l~~~P~~R~~~~~~l  245 (316)
T cd05619         174 --NTSVDWWSFGVLLYEMLIGQSPFHG--HDEEELFQSIRMDNPCYP----RWLTREAKDILVKLFVREPERRLGVKGDI  245 (316)
T ss_pred             --CchhhhhhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCC----ccCCHHHHHHHHHHhccCHhhcCCChHHH
Confidence              8999999999999999999999974  345666666665433322    24678999999999999999999986 55


Q ss_pred             H
Q psy1840         184 H  184 (423)
Q Consensus       184 ~  184 (423)
                      .
T Consensus       246 ~  246 (316)
T cd05619         246 R  246 (316)
T ss_pred             H
Confidence            3

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG1024|consensus

Probab=99.92  E-value=1.1e-24  Score=207.59  Aligned_cols=163  Identities=25%  Similarity=0.445  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ++-+.++.|++.||+|||++|+| |.||..+||+||+.-.+||+|=.+++-+...+...-.........||+||.+....
T Consensus       396 ~qlV~masQla~am~hlh~~~Vi-HkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~  474 (563)
T KOG1024|consen  396 IQLVLMASQLAMAMEHLHNHGVI-HKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSH  474 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcc-cchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhh
Confidence            44578999999999999999998 99999999999999999999999988665555443333444556799999999887


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++||||||+++|||+| |+.||.  ..++.|....+++|.....+   .+||.++..+|..||...|++||+++
T Consensus       475 y---ssasDvWsfGVllWELmtlg~~Pya--eIDPfEm~~ylkdGyRlaQP---~NCPDeLf~vMacCWallpeeRPsf~  546 (563)
T KOG1024|consen  475 Y---SSASDVWSFGVLLWELMTLGKLPYA--EIDPFEMEHYLKDGYRLAQP---FNCPDELFTVMACCWALLPEERPSFS  546 (563)
T ss_pred             h---cchhhhHHHHHHHHHHHhcCCCCcc--ccCHHHHHHHHhccceecCC---CCCcHHHHHHHHHHHhcCcccCCCHH
Confidence            6   999999999999999997 888997  46778888888887655443   37999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q psy1840         182 FVHHKLKEMNAGL  194 (423)
Q Consensus       182 ~I~~~L~~i~~~~  194 (423)
                      ++...|.+++...
T Consensus       547 Qlv~cLseF~~ql  559 (563)
T KOG1024|consen  547 QLVICLSEFHTQL  559 (563)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.92  E-value=2.7e-24  Score=207.16  Aligned_cols=157  Identities=26%  Similarity=0.506  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+... 
T Consensus       121 ~~~~~~~l~~~l~~lH~~~i~-H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~-  198 (288)
T cd05061         121 MIQMAAEIADGMAYLNAKKFV-HRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVF-  198 (288)
T ss_pred             HHHHHHHHHHHHHHHHhCCCc-CCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCC-
Confidence            578999999999999999998 999999999999999999999999875433222111122334567999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++||+++ |..||..  ....++...+..+....  . ...+++.+.+++.+||+.+|++||++.++
T Consensus       199 --~~~~DvwslG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~li~~~l~~~p~~Rps~~~l  271 (288)
T cd05061         199 --TTSSDMWSFGVVLWEITSLAEQPYQG--LSNEQVLKFVMDGGYLD--Q-PDNCPERVTDLMRMCWQFNPKMRPTFLEI  271 (288)
T ss_pred             --ChHhHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCCC--C-CCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence              889999999999999998 7888864  34455666555432221  1 23567899999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      ++.++..
T Consensus       272 l~~l~~~  278 (288)
T cd05061         272 VNLLKDD  278 (288)
T ss_pred             HHHHHhh
Confidence            9888764

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.92  E-value=1.8e-24  Score=204.63  Aligned_cols=153  Identities=25%  Similarity=0.501  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||+++........ ......++..|+|||.+.+..+ 
T Consensus       102 ~~~i~~qi~~~l~~lH~~~i~-H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~y~~Pe~~~~~~~-  178 (256)
T cd05059         102 LLDMCSDVCEAMEYLESNGFI-HRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYT-SSQGTKFPVKWAPPEVFDYSRF-  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cccccHhhEEECCCCcEEECCcccceeccccccc-ccCCCCCCccccCHHHhccCCC-
Confidence            578999999999999999988 9999999999999999999999998754322111 1111223456999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||..  .+..+....+..+..  +.. ...++.++.+++.+||..+|++||++.++
T Consensus       179 --~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~li~~cl~~~p~~Rpt~~~~  251 (256)
T cd05059         179 --SSKSDVWSFGVLMWEVFSEGKMPYER--FSNSEVVESVSAGYR--LYR-PKLAPTEVYTIMYSCWHEKPEDRPAFKKL  251 (256)
T ss_pred             --CchhhHHHHHHHHHHHhccCCCCCCC--CCHHHHHHHHHcCCc--CCC-CCCCCHHHHHHHHHHhcCChhhCcCHHHH
Confidence              789999999999999998 7889864  344556666654421  221 23578999999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++.|
T Consensus       252 l~~l  255 (256)
T cd05059         252 LSQL  255 (256)
T ss_pred             HHHh
Confidence            8875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.92  E-value=1.3e-24  Score=206.87  Aligned_cols=159  Identities=25%  Similarity=0.466  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.||+.|++|||+.+++ ||||||+||+++.++.+||+|||++................++..|+|||++....  
T Consensus       102 ~~~~~~qi~~~l~~lH~~~iv-H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  180 (269)
T cd05042         102 LQRMACEVASGLLWLHQADFI-HSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQD  180 (269)
T ss_pred             HHHHHHHHHHHHHHHHhcCEe-cccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhcccc
Confidence            468999999999999999987 99999999999999999999999976432221111112234456799999875421  


Q ss_pred             --CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCC-C-CCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         103 --LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLR-P-DTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       103 --~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~-p-~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                        ....+.++|||||||++|||++ |..||..  ....+............ + ......++..+..++..|| .||++|
T Consensus       181 ~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~R  257 (269)
T cd05042         181 LLPKDQTKKSNIWSLGVTMWELFTAADQPYPD--LSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETR  257 (269)
T ss_pred             ccccccchhhHHHHHHHHHHHHHhCCCCCCCc--CCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccc
Confidence              1134789999999999999998 6778863  23344444433322111 1 1123467888999999999 599999


Q ss_pred             CCHHHHHHHH
Q psy1840         178 PDLRFVHHKL  187 (423)
Q Consensus       178 Pt~~~I~~~L  187 (423)
                      |++.+|.+.|
T Consensus       258 pt~~~v~~~l  267 (269)
T cd05042         258 PTAEEVHELL  267 (269)
T ss_pred             cCHHHHHHHh
Confidence            9999998876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.92  E-value=1.7e-24  Score=204.82  Aligned_cols=154  Identities=29%  Similarity=0.512  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.|+.|||++|++ ||||||+||+++.++.+||+|||++.........  .....++..|+|||.+.+..+ 
T Consensus       106 ~~~~~~~i~~al~~lH~~~i~-h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~PE~~~~~~~-  181 (261)
T cd05148         106 LIDMACQVAEGMAYLEEQNSI-HRDLAARNILVGEDLVCKVADFGLARLIKEDVYL--SSDKKIPYKWTAPEAASHGTF-  181 (261)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccccCcceEEEcCCceEEEccccchhhcCCcccc--ccCCCCceEecCHHHHccCCC-
Confidence            578999999999999999987 9999999999999999999999998765322111  123334567999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|++++ |..||..  ....+....+..+.  ++.. ...+++.+.+++.+||+.+|++|||+.++
T Consensus       182 --~~~~DiwslG~~l~~l~~~g~~p~~~--~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l  254 (261)
T cd05148         182 --STKSDVWSFGILLYEMFTYGQVPYPG--MNNHEVYDQITAGY--RMPC-PAKCPQEIYKIMLECWAAEPEDRPSFKAL  254 (261)
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCCCc--CCHHHHHHHHHhCC--cCCC-CCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence              889999999999999998 8899964  34455666655432  2222 23678999999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|+.
T Consensus       255 ~~~L~~  260 (261)
T cd05148         255 REELDN  260 (261)
T ss_pred             HHHHhc
Confidence            998864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.92  E-value=8.8e-25  Score=209.92  Aligned_cols=151  Identities=23%  Similarity=0.339  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++........  ......|++.|+|||.+.+..+ 
T Consensus        99 ~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~-  174 (280)
T cd05608          99 ACFYTAQIISGLEHLHQRRII-YRDLKPENVLLDNDGNVRISDLGLAVELKDGQS--KTKGYAGTPGFMAPELLQGEEY-  174 (280)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCCEEEeeCccceecCCCCc--cccccCCCcCccCHHHhcCCCC-
Confidence            578999999999999999998 999999999999999999999999865432221  1234568889999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCC--hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP----  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP----  178 (423)
                        +.++|||||||++|||++|+.||......  ..++...+...    +......+++.+.+++.+||+.||++||    
T Consensus       175 --~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  248 (280)
T cd05608         175 --DFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILND----SVTYPDKFSPASKSFCEALLAKDPEKRLGFRD  248 (280)
T ss_pred             --CccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhccc----CCCCcccCCHHHHHHHHHHhcCCHHHhcCCCC
Confidence              88999999999999999999999753221  22333333222    1112235789999999999999999999    


Q ss_pred             -CHHHHHH
Q psy1840         179 -DLRFVHH  185 (423)
Q Consensus       179 -t~~~I~~  185 (423)
                       ++.++++
T Consensus       249 ~~~~~~l~  256 (280)
T cd05608         249 GNCDGLRT  256 (280)
T ss_pred             CCHHHHhc
Confidence             5566654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=2.8e-24  Score=205.83  Aligned_cols=160  Identities=21%  Similarity=0.381  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|++|||+.+++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+....+ 
T Consensus       111 ~~~~~~qi~~~l~~LH~~~i~-H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~-  188 (279)
T cd05057         111 LLNWCVQIAKGMSYLEEKRLV-HRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIY-  188 (279)
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-ecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCc-
Confidence            689999999999999999988 999999999999999999999999876543222111112223457999998876544 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|+||||+++||+++ |..||..  ....++...+..+.....   +..++..+.+++.+||..+|.+||++.++
T Consensus       189 --~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l  261 (279)
T cd05057         189 --THKSDVWSYGVTVWELMTFGAKPYEG--IPAVEIPDLLEKGERLPQ---PPICTIDVYMVLVKCWMIDAESRPTFKEL  261 (279)
T ss_pred             --CchhhHHHHHHHHHHHhcCCCCCCCC--CCHHHHHHHHhCCCCCCC---CCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence              889999999999999998 9999974  345666666665432211   22467899999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      .+.|.++...
T Consensus       262 ~~~l~~~~~~  271 (279)
T cd05057         262 INEFSKMARD  271 (279)
T ss_pred             HHHHHHHHhC
Confidence            9999887553

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.92  E-value=1.5e-24  Score=208.71  Aligned_cols=155  Identities=27%  Similarity=0.497  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ ||||||+||+++.++.+||+|||++.................+..|+|||.+.+..+ 
T Consensus       132 ~~~~~~~i~~aL~~lH~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  209 (288)
T cd05050         132 QLCIAKQVAAGMAYLSERKFV-HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRY-  209 (288)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCC-
Confidence            579999999999999999998 999999999999999999999999765432221111122234567999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||.+  ....++...+..+....   ....++.++.+++.+||+.+|++||++.++
T Consensus       210 --~~~~Dv~slG~il~el~~~~~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rpt~~el  282 (288)
T cd05050         210 --TTESDVWAYGVVLWEIFSYGMQPYYG--MAHEEVIYYVRDGNVLS---CPDNCPLELYNLMRLCWSKLPSDRPSFASI  282 (288)
T ss_pred             --CchhHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence              889999999999999997 7788863  34566666666544321   123578899999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      .+.|+
T Consensus       283 ~~~l~  287 (288)
T cd05050         283 NRILQ  287 (288)
T ss_pred             HHHhh
Confidence            98875

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.92  E-value=1.9e-24  Score=210.01  Aligned_cols=158  Identities=24%  Similarity=0.430  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|+.|||+++++ |+||||+||+++.++.+|++|||+++...............++..|+|||.+.+... 
T Consensus       143 ~~~i~~~i~~~l~~lH~~~iv-H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  220 (302)
T cd05055         143 LLSFSYQVAKGMAFLASKNCI-HRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVY-  220 (302)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-hhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCC-
Confidence            678999999999999999988 999999999999999999999999875533222111122345677999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++||+++ |..||..... .......+..+.  .+. .....++.+.+++.+||+.+|++||++.++
T Consensus       221 --~~~~DiwslGvil~el~t~g~~p~~~~~~-~~~~~~~~~~~~--~~~-~~~~~~~~~~~li~~cl~~~p~~Rpt~~el  294 (302)
T cd05055         221 --TFESDVWSYGILLWEIFSLGSNPYPGMPV-DSKFYKLIKEGY--RMA-QPEHAPAEIYDIMKTCWDADPLKRPTFKQI  294 (302)
T ss_pred             --CcHhHHHHHHHHHHHHHhCCCCCcCCCCc-hHHHHHHHHcCC--cCC-CCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence              889999999999999998 8999875332 233334443332  121 123467899999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      ++.|+++
T Consensus       295 l~~l~~~  301 (302)
T cd05055         295 VQLIGKQ  301 (302)
T ss_pred             HHHHHhh
Confidence            9988764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=1.1e-24  Score=219.45  Aligned_cols=157  Identities=18%  Similarity=0.260  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......||+.|+|||++.+..+ 
T Consensus       184 ~~~i~~qi~~aL~ylH~~~Iv-HrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~-  260 (391)
T PHA03212        184 ILAIERSVLRAIQYLHENRII-HRDIKAENIFINHPGDVCLGDFGAACFPVDINA-NKYYGWAGTIATNAPELLARDPY-  260 (391)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCChHhEEEcCCCCEEEEeCCcccccccccc-cccccccCccCCCChhhhcCCCC-
Confidence            679999999999999999998 999999999999999999999999865332211 12234578999999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC-C----ChHHHHHHHh--------------------------cCCCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR-M----TDEEIITSVT--------------------------QGSGLRPDT  153 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~-~----~~~~i~~~i~--------------------------~~~~~~p~~  153 (423)
                        +.++|||||||++|||++|..||.... .    .....+..+.                          ......+..
T Consensus       261 --~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (391)
T PHA03212        261 --GPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGS  338 (391)
T ss_pred             --CcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCC
Confidence              899999999999999999998764311 0    0111111111                          100111110


Q ss_pred             C-----CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         154 S-----SLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       154 ~-----~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .     ....+.++.+++.+||+.||++|||+.++++.
T Consensus       339 ~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~h  376 (391)
T PHA03212        339 RPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDF  376 (391)
T ss_pred             CCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            0     01346789999999999999999999999863

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.92  E-value=2.6e-24  Score=203.16  Aligned_cols=156  Identities=25%  Similarity=0.461  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+++++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..+
T Consensus        99 ~~~~~~qi~~~L~~lH~~~i~-H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~  177 (257)
T cd05040          99 LCDYAVQIANGMRYLESKRFI-HRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTF  177 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCc
Confidence            578999999999999999998 9999999999999999999999998765432211 11123345678999999877654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||..  .+..++...+...... .. ....++..+.+++.+||+.+|++||++.+
T Consensus       178 ---~~~~Di~slG~~l~el~t~g~~p~~~--~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~  250 (257)
T cd05040         178 ---SHASDVWMFGVTLWEMFTYGEEPWAG--LSGSQILKKIDKEGER-LE-RPEACPQDIYNVMLQCWAHNPADRPTFAA  250 (257)
T ss_pred             ---CchhhhHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHhcCCc-CC-CCccCCHHHHHHHHHHCCCCcccCCCHHH
Confidence               889999999999999998 9999963  3445555555432211 11 12356889999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         183 VHHKLK  188 (423)
Q Consensus       183 I~~~L~  188 (423)
                      +++.|.
T Consensus       251 ~~~~l~  256 (257)
T cd05040         251 LREFLP  256 (257)
T ss_pred             HHHHhc
Confidence            998764

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.92  E-value=2.6e-24  Score=212.98  Aligned_cols=160  Identities=26%  Similarity=0.444  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++................++..|+|||.+.+..+ 
T Consensus       181 ~~~~~~qi~~al~~lH~~~i~-H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  258 (343)
T cd05103         181 LICYSFQVAKGMEFLASRKCI-HRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-  258 (343)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCC-
Confidence            578999999999999999998 999999999999999999999999875432222111122344567999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|++++ |..||..... ...+...+..+....  . +...++++.+++.+||+.+|++||++.+|
T Consensus       259 --~~~~Di~slG~~l~el~~~g~~p~~~~~~-~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~cl~~~p~~Rps~~ei  332 (343)
T cd05103         259 --TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEGTRMR--A-PDYTTPEMYQTMLDCWHGEPSQRPTFSEL  332 (343)
T ss_pred             --CchhhHHHHHHHHHHHHHCCCCCCCCccc-cHHHHHHHhccCCCC--C-CCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              889999999999999997 8899875432 233444444432221  1 12357889999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       333 l~~l~~~~~  341 (343)
T cd05103         333 VEHLGNLLQ  341 (343)
T ss_pred             HHHHHHHHh
Confidence            999988754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.92  E-value=7.6e-25  Score=214.49  Aligned_cols=149  Identities=22%  Similarity=0.314  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++.......  .......|+..|+|||.+.+..+ 
T Consensus        98 ~~~~~~qi~~~l~~LH~~~iv-H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~-  173 (318)
T cd05570          98 ARFYAAEIVLGLQFLHERGII-YRDLKLDNVLLDSEGHIKIADFGMCKEGILGG--VTTSTFCGTPDYIAPEILSYQPY-  173 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-ccCCCHHHeEECCCCcEEecccCCCeecCcCC--CcccceecCccccCHHHhcCCCC-
Confidence            578899999999999999998 99999999999999999999999976432111  11234468889999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL----  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~----  180 (423)
                        +.++|||||||++|+|++|..||..  .+..++...+.......|    ..++..+.+++++||+.||.+||++    
T Consensus       174 --~~~~DiwslGvil~~l~~G~~pf~~--~~~~~~~~~i~~~~~~~~----~~~~~~~~~li~~~l~~dP~~R~s~~~~~  245 (318)
T cd05570         174 --GPAVDWWALGVLLYEMLAGQSPFEG--DDEDELFQSILEDEVRYP----RWLSKEAKSILKSFLTKNPEKRLGCLPTG  245 (318)
T ss_pred             --CcchhhhhHHHHHHHHhhCCCCCCC--CCHHHHHHHHHcCCCCCC----CcCCHHHHHHHHHHccCCHHHcCCCCCCC
Confidence              8899999999999999999999964  345566666655443322    3468899999999999999999998    


Q ss_pred             -HHHHH
Q psy1840         181 -RFVHH  185 (423)
Q Consensus       181 -~~I~~  185 (423)
                       .++++
T Consensus       246 ~~~ll~  251 (318)
T cd05570         246 EQDIKG  251 (318)
T ss_pred             HHHHhc
Confidence             66654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.92  E-value=2.6e-24  Score=204.63  Aligned_cols=157  Identities=25%  Similarity=0.503  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccc-cccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ-ERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~-~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.|++.|++|||+.|++ ||||||+||+++.++.+||+|||++........... ......+..|+|||.+.+..+
T Consensus       109 ~~~~~~~l~~al~~lH~~~i~-H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  187 (268)
T cd05063         109 LVGMLRGIAAGMKYLSDMNYV-HRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKF  187 (268)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCc
Confidence            678999999999999999988 999999999999999999999999875543221111 111223456999999876554


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++||+++ |..||..  .+..++...+..+.. .|  ....++.++.+++.+||+.+|++||++.+
T Consensus       188 ---~~~~Dv~slG~il~ell~~g~~p~~~--~~~~~~~~~i~~~~~-~~--~~~~~~~~~~~li~~c~~~~p~~Rp~~~~  259 (268)
T cd05063         188 ---TSASDVWSFGIVMWEVMSFGERPYWD--MSNHEVMKAINDGFR-LP--APMDCPSAVYQLMLQCWQQDRARRPRFVD  259 (268)
T ss_pred             ---ChHhHHHHHHHHHHHHHhCCCCCCCc--CCHHHHHHHHhcCCC-CC--CCCCCCHHHHHHHHHHcCCCcccCcCHHH
Confidence               889999999999999997 9999964  344566666655321 12  12357899999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1840         183 VHHKLKEM  190 (423)
Q Consensus       183 I~~~L~~i  190 (423)
                      |.+.|.++
T Consensus       260 i~~~l~~~  267 (268)
T cd05063         260 IVNLLDKL  267 (268)
T ss_pred             HHHHHHhh
Confidence            99988764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.92  E-value=3.4e-24  Score=204.14  Aligned_cols=158  Identities=22%  Similarity=0.458  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|++|||+.+++ ||||||+||+++.++.+||+|||+++......... .....++..|+|||.+....+ 
T Consensus       109 ~~~~~~~l~~~l~~lH~~~~~-H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~-  185 (270)
T cd05056         109 LILYSYQLSTALAYLESKRFV-HRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYK-ASKGKLPIKWMAPESINFRRF-  185 (270)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccccChheEEEecCCCeEEccCceeeeccccccee-cCCCCccccccChhhhccCCC-
Confidence            678999999999999999998 99999999999999999999999987654332111 122234457999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||...  +..+....+..+...  .. ...++..+.+++.+||..+|++|||+.++
T Consensus       186 --~~~~Di~slG~il~el~~~g~~pf~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~li~~~l~~~P~~Rpt~~~~  258 (270)
T cd05056         186 --TSASDVWMFGVCMWEILMLGVKPFQGV--KNNDVIGRIENGERL--PM-PPNCPPTLYSLMTKCWAYDPSKRPRFTEL  258 (270)
T ss_pred             --CchhhhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHcCCcC--CC-CCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999996 99999643  334555555554322  11 23578999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      +..|..+..
T Consensus       259 ~~~l~~~~~  267 (270)
T cd05056         259 KAQLSDILQ  267 (270)
T ss_pred             HHHHHHHHh
Confidence            999988754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG0694|consensus

Probab=99.92  E-value=8.2e-25  Score=221.79  Aligned_cols=143  Identities=27%  Similarity=0.403  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      .-++..++.||.|||++||| +||||.+|||+|.+|.+||+|||+++......  ..+.+++||+.|+|||++.+..|  
T Consensus       471 rfyaAev~l~L~fLH~~~II-YRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g--~~TsTfCGTpey~aPEil~e~~Y--  545 (694)
T KOG0694|consen  471 RFYAAEVVLGLQFLHENGII-YRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG--DRTSTFCGTPEFLAPEVLTEQSY--  545 (694)
T ss_pred             HHHHHHHHHHHHHHHhcCce-eeecchhheEEcccCcEEecccccccccCCCC--CccccccCChhhcChhhhccCcc--
Confidence            35688999999999999999 99999999999999999999999998644332  34578999999999999999877  


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                       +.++|-|||||+||||+.|+.||.+  .+.+++...|.......|.    .++.+..++|++++..+|++|.-.
T Consensus       546 -t~aVDWW~lGVLlyeML~Gq~PF~g--ddEee~FdsI~~d~~~yP~----~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  546 -TRAVDWWGLGVLLYEMLVGESPFPG--DDEEEVFDSIVNDEVRYPR----FLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             -cchhhHHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHhcCCCCCCC----cccHHHHHHHHHHhccCcccccCC
Confidence             9999999999999999999999984  4568899998876655553    578999999999999999999654

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.92  E-value=6.6e-25  Score=215.30  Aligned_cols=145  Identities=21%  Similarity=0.241  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++......  .......|++.|+|||++.+..+ 
T Consensus        98 ~~~~~~qi~~~l~~lH~~giv-H~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (323)
T cd05575          98 ARFYAAEIASALGYLHSLNII-YRDLKPENILLDSQGHVVLTDFGLCKEGIEHS--KTTSTFCGTPEYLAPEVLRKQPY-  173 (323)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eCCCCHHHeEECCCCcEEEeccCCCcccccCC--CccccccCChhhcChhhhcCCCC-
Confidence            467899999999999999988 99999999999999999999999986432221  12234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                        +.++|||||||++|||++|..||..  .+..++...+..+....+    ...+..+.+++.+||+.||.+||+..
T Consensus       174 --~~~~DvwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~~----~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         174 --DRTVDWWCLGAVLYEMLYGLPPFYS--RDTAEMYDNILNKPLRLK----PNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             --CccccccccchhhhhhhcCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence              8899999999999999999999974  344566666655432222    24688999999999999999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0597|consensus

Probab=99.92  E-value=5.9e-25  Score=217.75  Aligned_cols=153  Identities=22%  Similarity=0.367  Sum_probs=127.1

Q ss_pred             ChHH-HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          21 IPIG-SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        21 ~p~~-~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      .|++ ...++.|++.||.|||+.+|+ |||+||.|||++..|++|+||||+++....  .........||+.|||||.+.
T Consensus        97 lpEe~v~~~a~~LVsaL~yLhs~ril-hrd~kPqniLl~~~~~~KlcdFg~Ar~m~~--~t~vltsikGtPlYmAPElv~  173 (808)
T KOG0597|consen   97 LPEEQVRAIAYDLVSALYYLHSNRIL-HRDMKPQNILLEKGGTLKLCDFGLARAMST--NTSVLTSIKGTPLYMAPELVE  173 (808)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCcc-cccCCcceeeecCCCceeechhhhhhhccc--CceeeeeccCcccccCHHHHc
Confidence            4555 358999999999999999998 999999999999999999999999986543  334456778999999999999


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +..+   +..+|.||+|||+||++.|++||..  .+.-++++.|...+...|    ...+..+.++++..+.+||.+|.+
T Consensus       174 e~py---d~~sDlWslGcilYE~~~G~PPF~a--~si~~Lv~~I~~d~v~~p----~~~S~~f~nfl~gLL~kdP~~Rlt  244 (808)
T KOG0597|consen  174 EQPY---DHTSDLWSLGCILYELYVGQPPFYA--RSITQLVKSILKDPVKPP----STASSSFVNFLQGLLIKDPAQRLT  244 (808)
T ss_pred             CCCc---cchhhHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHhcCCCCCc----ccccHHHHHHHHHHhhcChhhccc
Confidence            8766   8999999999999999999999963  233445555554333322    367899999999999999999999


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      ..+++.
T Consensus       245 W~~Ll~  250 (808)
T KOG0597|consen  245 WTDLLG  250 (808)
T ss_pred             HHHHhc
Confidence            988765

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=1.3e-24  Score=219.05  Aligned_cols=159  Identities=21%  Similarity=0.244  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||++................||..|+|||++.+..+ 
T Consensus       187 ~~~i~~ql~~aL~~LH~~giv-HrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-  264 (392)
T PHA03207        187 AITIQRRLLEALAYLHGRGII-HRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPY-  264 (392)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCC-
Confidence            689999999999999999998 999999999999999999999999876543332222334578999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCC--hHHH---HHHHhcCC--------------------CCCCCC------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--DEEI---ITSVTQGS--------------------GLRPDT------  153 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--~~~i---~~~i~~~~--------------------~~~p~~------  153 (423)
                        +.++|||||||++|||++|+.||.+....  ...+   +..+....                    ..++..      
T Consensus       265 --~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (392)
T PHA03207        265 --CAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVI  342 (392)
T ss_pred             --CchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchh
Confidence              88999999999999999999999653221  1111   11111000                    011111      


Q ss_pred             CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q psy1840         154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL  187 (423)
Q Consensus       154 ~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L  187 (423)
                      .....+.++.++|.+||..||++||++.+++..-
T Consensus       343 ~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p  376 (392)
T PHA03207        343 RKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLP  376 (392)
T ss_pred             hccCcchhHHHHHHHHhccChhhCCCHHHHhhCc
Confidence            1123567889999999999999999999998753

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.92  E-value=3.1e-24  Score=202.16  Aligned_cols=150  Identities=23%  Similarity=0.399  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......++..|+|||++.+..+ 
T Consensus       103 ~~~i~~~l~~al~~lH~~~i~-h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~-  178 (256)
T cd08529         103 VWRFFIQILLGLAHLHSKKIL-HRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN--FANTIVGTPYYLSPELCEDKPY-  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCcceEEEeCCCCEEEcccccceeccCccc--hhhccccCccccCHHHhcCCCC-
Confidence            578999999999999999998 999999999999999999999999875543221  1133457788999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|+|++|+.||...  ...+....+..+.  .+... ..++.++.+++.+||+.+|++||++.+++
T Consensus       179 --~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll  251 (256)
T cd08529         179 --NEKSDVWALGVVLYECCTGKHPFDAN--NQGALILKIIRGV--FPPVS-QMYSQQLAQLIDQCLTKDYRQRPDTFQLL  251 (256)
T ss_pred             --CCccchHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHcCC--CCCCc-cccCHHHHHHHHHHccCCcccCcCHHHHh
Confidence              78999999999999999999999643  3445555554432  22222 25788999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       252 ~  252 (256)
T cd08529         252 R  252 (256)
T ss_pred             h
Confidence            5

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.92  E-value=3.9e-24  Score=203.25  Aligned_cols=156  Identities=26%  Similarity=0.497  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||.+......... ......++..|+|||...+..+ 
T Consensus       104 ~~~~~~~l~~aL~~lH~~~i~-H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~-  180 (262)
T cd05071         104 LVDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRF-  180 (262)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccccCcccEEEcCCCcEEeccCCceeeccccccc-cccCCcccceecCHhHhccCCC-
Confidence            578999999999999999998 9999999999999999999999998755322211 1122345567999998876554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||..  ....+....+..+..  +. ....++..+.+++.+||+.+|++||++.++
T Consensus       181 --~~~~DvwslG~~l~ellt~g~~p~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~  253 (262)
T cd05071         181 --TIKSDVWSFGILLTELTTKGRVPYPG--MVNREVLDQVERGYR--MP-CPPECPESLHDLMCQCWRKEPEERPTFEYL  253 (262)
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCCCC--CChHHHHHHHhcCCC--CC-CccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence              889999999999999999 7888864  334555555544321  11 123578899999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      .+.|+..
T Consensus       254 ~~~l~~~  260 (262)
T cd05071         254 QAFLEDY  260 (262)
T ss_pred             HHHHHHh
Confidence            9988764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.92  E-value=4.1e-25  Score=216.94  Aligned_cols=150  Identities=19%  Similarity=0.288  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+ .|++ ||||||+|||++.++.+||+|||+++.......  ......|++.|+|||++.+..+
T Consensus        97 ~~~~~~qi~~aL~~lH~~~~iv-HrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~  173 (325)
T cd05594          97 ARFYGAEIVSALDYLHSEKNVV-YRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPEVLEDNDY  173 (325)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEE-ecCCCCCeEEECCCCCEEEecCCCCeecCCCCc--ccccccCCcccCCHHHHccCCC
Confidence            56889999999999997 6887 999999999999999999999999864322211  1234568899999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----  178 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----  178 (423)
                         +.++|||||||++|||++|..||..  ....++...+.......|    ..+++++.+++.+||+.||++|+     
T Consensus       174 ---~~~~DiwslG~il~el~tG~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~~L~~dP~~R~~~~~~  244 (325)
T cd05594         174 ---GRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIRFP----RTLSPEAKSLLSGLLKKDPKQRLGGGPD  244 (325)
T ss_pred             ---CCccccccccceeeeeccCCCCCCC--CCHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHhhcCHHHhCCCCCC
Confidence               8999999999999999999999964  334555555544332222    24688999999999999999996     


Q ss_pred             CHHHHHHH
Q psy1840         179 DLRFVHHK  186 (423)
Q Consensus       179 t~~~I~~~  186 (423)
                      ++.++++.
T Consensus       245 ~~~~il~h  252 (325)
T cd05594         245 DAKEIMQH  252 (325)
T ss_pred             CHHHHhcC
Confidence            88887653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.92  E-value=1.5e-24  Score=208.34  Aligned_cols=152  Identities=20%  Similarity=0.229  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........   .....++..|+|||.+.+..+ 
T Consensus       110 ~~~~~~qi~~al~~lH~~~iv-H~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~-  184 (288)
T cd07863         110 IKDLMRQFLRGLDFLHANCIV-HRDLKPENILVTSGGQVKLADFGLARIYSCQMA---LTPVVVTLWYRAPEVLLQSTY-  184 (288)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEECCCCCEEECccCccccccCccc---CCCccccccccCchHhhCCCC-
Confidence            578999999999999999988 999999999999999999999999876532211   123457888999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC-----------------CCCCC------CCCCCchHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS-----------------GLRPD------TSSLDCAPS  161 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~-----------------~~~p~------~~~~~~~~~  161 (423)
                        +.++|||||||++|||++|..||...  ...+....+....                 ...+.      .....++..
T Consensus       185 --~~~~DiwslG~~l~~l~~g~~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (288)
T cd07863         185 --ATPVDMWSVGCIFAEMFRRKPLFCGN--SEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEES  260 (288)
T ss_pred             --CCcchhhhHHHHHHHHHhCCcCcCCC--CHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHH
Confidence              89999999999999999999998643  2222222221100                 00000      001246778


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         162 IIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       162 l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +.+++.+|++.||++|||+.+++.
T Consensus       261 ~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         261 GAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             HHHHHHHHhccCcccCCCHHHHhc
Confidence            999999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.92  E-value=2.4e-24  Score=208.35  Aligned_cols=157  Identities=24%  Similarity=0.469  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|++|||+.|++ ||||||+||+++.++.++|+|||++................++..|++||...++.+ 
T Consensus       132 ~~~~~~~i~~al~~lH~~~i~-H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~-  209 (296)
T cd05095         132 LIFMATQIASGMKYLSSLNFV-HRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKF-  209 (296)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCc-
Confidence            678999999999999999988 999999999999999999999999875432221111122334567999998776554 


Q ss_pred             CCCCccchHHHHHHHHHHHh--CCCCCCCCCCChHHHHHHHhc-----CCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG--RQGPWGHLRMTDEEIITSVTQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt--g~~Pf~~~~~~~~~i~~~i~~-----~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                        +.++|||||||++|||++  |..||..  .+..+++.....     ....... ....+++.+.+++.+||+.||++|
T Consensus       210 --~~~~DiwSlG~~l~el~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~R  284 (296)
T cd05095         210 --TTASDVWAFGVTLWEILTLCKEQPYSQ--LSDEQVIENTGEFFRDQGRQVYLP-KPALCPDSLYKLMLSCWRRNAKER  284 (296)
T ss_pred             --cchhhhhHHHHHHHHHHHhCCCCCccc--cChHHHHHHHHHHHhhccccccCC-CCCCCCHHHHHHHHHHcCCCcccC
Confidence              889999999999999998  6678753  334444433221     1111111 123577899999999999999999


Q ss_pred             CCHHHHHHHHH
Q psy1840         178 PDLRFVHHKLK  188 (423)
Q Consensus       178 Pt~~~I~~~L~  188 (423)
                      |++.+|.+.|+
T Consensus       285 p~~~~i~~~l~  295 (296)
T cd05095         285 PSFQEIHATLL  295 (296)
T ss_pred             CCHHHHHHHHh
Confidence            99999998875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.92  E-value=2.5e-24  Score=211.94  Aligned_cols=153  Identities=22%  Similarity=0.348  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHhCC-CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSE-IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~-ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+.+ ++ ||||||+||+++.++.+||+|||++.......    .....++..|+|||.+.+..+
T Consensus       105 ~~~~~~~i~~~l~~lH~~~~iv-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~g~~~y~aPE~~~~~~~  179 (331)
T cd06649         105 LGKVSIAVLRGLAYLREKHQIM-HRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHY  179 (331)
T ss_pred             HHHHHHHHHHHHHHHhhcCCEE-cCCCChhhEEEcCCCcEEEccCcccccccccc----cccCCCCcCcCCHhHhcCCCC
Confidence            4688999999999999874 65 99999999999999999999999987543221    234568889999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-------------------------------------
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-------------------------------------  146 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-------------------------------------  146 (423)
                         +.++|||||||++|||++|+.||....  ..++...+...                                     
T Consensus       180 ---~~~~DiwslG~il~el~tg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (331)
T cd06649         180 ---SVQSDIWSMGLSLVELAIGRYPIPPPD--AKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIF  254 (331)
T ss_pred             ---CchHhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHhcccccccccCCccccCcccccccccccccccccccchhHH
Confidence               889999999999999999999996322  22222111100                                     


Q ss_pred             -------CCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q psy1840         147 -------SGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL  187 (423)
Q Consensus       147 -------~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L  187 (423)
                             ....|......+++++.+++.+||+.||++|||+.+|++..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~  302 (331)
T cd06649         255 ELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHT  302 (331)
T ss_pred             HHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence                   00112222234678999999999999999999999998754

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.92  E-value=8.3e-25  Score=223.75  Aligned_cols=154  Identities=19%  Similarity=0.197  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+.+++ ||||||+|||++.++ .+||+|||+++.......   .....+++.|+|||++.+.. 
T Consensus       172 ~~~~~~qi~~gL~yLH~~~Ii-HrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~---~~~~~~t~~y~aPE~~~~~~-  246 (440)
T PTZ00036        172 VKLYSYQLCRALAYIHSKFIC-HRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQR---SVSYICSRFYRAPELMLGAT-  246 (440)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-cCCcCHHHEEEcCCCCceeeeccccchhccCCCC---cccCCCCcCccCHHHhcCCC-
Confidence            467889999999999999988 999999999999664 799999999876543221   12346788999999987643 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--C---------------CCCCCC--------CCCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--S---------------GLRPDT--------SSLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~---------------~~~p~~--------~~~~~  158 (423)
                       .++.++|||||||++|||++|..||.+..  ..+.+..+...  .               ...|..        .+...
T Consensus       247 -~~~~~~DiwSlGvil~elltG~~pf~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~  323 (440)
T PTZ00036        247 -NYTTHIDLWSLGCIIAEMILGYPIFSGQS--SVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGT  323 (440)
T ss_pred             -CCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCC
Confidence             23889999999999999999999997532  22222222110  0               000111        11235


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +.++.+|+.+||..||.+|||+.+++..
T Consensus       324 ~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        324 PDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             CHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence            7889999999999999999999998754

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=3.4e-24  Score=202.85  Aligned_cols=154  Identities=19%  Similarity=0.343  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-ccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.|+.|||+.|++ ||||+|+||+++.++.++|+|||+++......... ......++..|+|||.+.+...
T Consensus       106 ~~~~~~~l~~~l~~lH~~~i~-H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  184 (263)
T cd06625         106 TRKYTRQILEGVEYLHSNMIV-HRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGY  184 (263)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCC
Confidence            578999999999999999998 99999999999999999999999986543221111 1123456778999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++||+++|+.||...  ............. ..+. .+..++..+.+++.+||..+|++|||+.++
T Consensus       185 ---~~~~Di~slG~il~el~~g~~p~~~~--~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l  257 (263)
T cd06625         185 ---GRKADVWSVGCTVVEMLTEKPPWAEF--EAMAAIFKIATQP-TNPQ-LPSHVSPDARNFLRRTFVENAKKRPSAEEL  257 (263)
T ss_pred             ---CchhhhHHHHHHHHHHHhCCCCcccc--chHHHHHHHhccC-CCCC-CCccCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence               89999999999999999999999643  2233333333222 1222 233578899999999999999999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      +..
T Consensus       258 l~~  260 (263)
T cd06625         258 LRH  260 (263)
T ss_pred             hhC
Confidence            764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=8.1e-25  Score=216.58  Aligned_cols=153  Identities=23%  Similarity=0.263  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCC--------------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--------------------------   78 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~--------------------------   78 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......                          
T Consensus       103 ~~~i~~qi~~aL~~LH~~gii-H~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (350)
T cd05573         103 ARFYIAELVLALDSVHKLGFI-HRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHK  181 (350)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccc
Confidence            568899999999999999998 99999999999999999999999987543322                          


Q ss_pred             -cccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CCCCCCCCC
Q psy1840          79 -ETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SGLRPDTSS  155 (423)
Q Consensus        79 -~~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~~~p~~~~  155 (423)
                       .........|++.|+|||++.+..+   +.++|||||||++|||++|+.||...  ...+....+...  ....|..  
T Consensus       182 ~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~DiwSlG~il~ell~g~~Pf~~~--~~~~~~~~i~~~~~~~~~p~~--  254 (350)
T cd05573         182 QRRVRANSTVGTPDYIAPEVLRGTPY---GLECDWWSLGVILYEMLYGFPPFYSD--TLQETYNKIINWKESLRFPPD--  254 (350)
T ss_pred             cccccccccccCccccCHHHHcCCCC---CCceeeEecchhhhhhccCCCCCCCC--CHHHHHHHHhccCCcccCCCC--
Confidence             0011234568899999999988755   89999999999999999999999753  344455555442  1122221  


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCC-HHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPD-LRFVHHK  186 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt-~~~I~~~  186 (423)
                      ..+++++.+++.+||. ||.+||+ +.++++.
T Consensus       255 ~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         255 PPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             CCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            2378999999999997 9999999 9998764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.92  E-value=1.3e-24  Score=209.03  Aligned_cols=157  Identities=21%  Similarity=0.355  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||+|||+. +++ ||||||+||+++.++.+||+|||++........   .....++..|+|||.+.+...
T Consensus       109 ~~~i~~~i~~~l~~lh~~~~i~-H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~  184 (288)
T cd06616         109 LGKIAVATVKALNYLKEELKII-HRDVKPSNILLDRNGNIKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERIDPSAR  184 (288)
T ss_pred             HHHHHHHHHHHHHHHhhcCCee-ccCCCHHHEEEccCCcEEEeecchhHHhccCCc---cccccCccCccCHHHhccccc
Confidence            578999999999999985 777 999999999999999999999999875432221   123357788999999876521


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC-CCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS-GLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~-~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ..++.++||||||+++||+++|+.||.... ...+.+..+..+. +..+......++.++.+++.+||+.+|++|||+.+
T Consensus       185 ~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~  263 (288)
T cd06616         185 DGYDVRSDVWSLGITLYEVATGKFPYPKWN-SVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKE  263 (288)
T ss_pred             cCCcchhhhhHHHHHHHHHHhCCCCchhcc-hHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHH
Confidence            134889999999999999999999996433 1122222222221 11122222357899999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      |+..
T Consensus       264 i~~~  267 (288)
T cd06616         264 LLEH  267 (288)
T ss_pred             HhcC
Confidence            8764

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.91  E-value=1.4e-24  Score=208.13  Aligned_cols=152  Identities=19%  Similarity=0.302  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||+|||+.|++ ||||||+||+++.++.+||+|||++.......   ......++..|+|||++.+..+ 
T Consensus        97 ~~~~~~qi~~al~~lH~~~iv-H~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~-  171 (277)
T cd05607          97 VIHYSAQITCGILHLHSMDIV-YRDMKPENVLLDDQGNCRLSDLGLAVELKDGK---TITQRAGTNGYMAPEILKEEPY-  171 (277)
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-EccCChHhEEEcCCCCEEEeeceeeeecCCCc---eeeccCCCCCccCHHHHccCCC-
Confidence            467899999999999999998 99999999999999999999999987553221   1123467889999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCC--ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRM--TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~--~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                        +.++||||+||++|||++|..||.....  ...++..........   .....++.++.+++.+||+.||++||++.+
T Consensus       172 --~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~L~~~P~~R~~~~~  246 (277)
T cd05607         172 --SYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVK---FEHQNFTEESKDICRLFLAKKPEDRLGSRE  246 (277)
T ss_pred             --CCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccc---cccccCCHHHHHHHHHHhccCHhhCCCCcc
Confidence              8999999999999999999999964322  223333333322211   122357889999999999999999999977


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +.+.
T Consensus       247 ~~~~  250 (277)
T cd05607         247 KNDD  250 (277)
T ss_pred             chhh
Confidence            6543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.91  E-value=2.9e-24  Score=203.47  Aligned_cols=155  Identities=28%  Similarity=0.533  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||+|||+.|++ ||||||+||+++.++.++|+|||++........ .......++..|+|||.+.+... 
T Consensus       104 ~~~i~~~i~~al~~LH~~~i~-H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~~pe~~~~~~~-  180 (260)
T cd05067         104 LIDMAAQIAEGMAFIERKNYI-HRDLRAANILVSETLCCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTF-  180 (260)
T ss_pred             HHHHHHHHHHHHHHHhcCCee-cccccHHhEEEcCCCCEEEccCcceeecCCCCc-ccccCCcccccccCHHHhccCCc-
Confidence            578999999999999999987 999999999999999999999999865432211 11122334567999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||..  .+..+....+..+..  +. ....++.++.+++.+||+.+|++||++.++
T Consensus       181 --~~~~Di~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l  253 (260)
T cd05067         181 --TIKSDVWSFGILLTEIVTYGRIPYPG--MTNPEVIQNLERGYR--MP-RPDNCPEELYELMRLCWKEKPEERPTFEYL  253 (260)
T ss_pred             --CcccchHHHHHHHHHHHhCCCCCCCC--CChHHHHHHHHcCCC--CC-CCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence              889999999999999998 9999974  345566666655422  22 223578899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      ...|+.
T Consensus       254 ~~~l~~  259 (260)
T cd05067         254 RSVLED  259 (260)
T ss_pred             HHHhhc
Confidence            988864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.91  E-value=6.4e-25  Score=215.58  Aligned_cols=147  Identities=20%  Similarity=0.242  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||++.+..+ 
T Consensus        98 ~~~~~~qi~~~L~~lH~~gii-HrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (325)
T cd05602          98 ARFYAAEIASALGYLHSLNIV-YRDLKPENILLDSQGHIVLTDFGLCKENIEHN--GTTSTFCGTPEYLAPEVLHKQPY-  173 (325)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ecCCCHHHeEECCCCCEEEccCCCCcccccCC--CCcccccCCccccCHHHHcCCCC-
Confidence            356889999999999999998 99999999999999999999999986432211  12234568999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++|..||..  ....+....+......    ....++..+.+++.+||+.||.+||+..+.
T Consensus       174 --~~~~DiwslG~il~el~~g~~pf~~--~~~~~~~~~i~~~~~~----~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  244 (325)
T cd05602         174 --DRTVDWWCLGAVLYEMLYGLPPFYS--RNTAEMYDNILNKPLQ----LKPNITNSARHLLEGLLQKDRTKRLGAKDD  244 (325)
T ss_pred             --CCccccccccHHHHHHhcCCCCCCC--CCHHHHHHHHHhCCcC----CCCCCCHHHHHHHHHHcccCHHHCCCCCCC
Confidence              8899999999999999999999974  3445555555543221    123578899999999999999999987643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.91  E-value=2.1e-24  Score=214.86  Aligned_cols=155  Identities=20%  Similarity=0.252  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||++|++ ||||||+||+++.++.+||+|||+++......   ......++..|+|||.+.+..+ 
T Consensus       125 ~~~~~~qi~~~L~~LH~~~iv-HrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~-  199 (359)
T cd07876         125 MSYLLYQMLCGIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGLARTACTNF---MMTPYVVTRYYRAPEVILGMGY-  199 (359)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEEECCCCCEEEecCCCccccccCc---cCCCCcccCCCCCchhccCCCC-
Confidence            457899999999999999998 99999999999999999999999986542221   1233467889999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-------------HHHHH-------HHhcCCCCCCCC-----------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-------------EEIIT-------SVTQGSGLRPDT-----------  153 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-------------~~i~~-------~i~~~~~~~p~~-----------  153 (423)
                        +.++|||||||++|+|++|+.||.......             .++..       ......+..+..           
T Consensus       200 --~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (359)
T cd07876         200 --KENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIF  277 (359)
T ss_pred             --CcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhcccccc
Confidence              889999999999999999999997532100             00000       000111010000           


Q ss_pred             -----CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         154 -----SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       154 -----~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                           .....+..+.+++.+||+.||++|||+.+++..
T Consensus       278 ~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  315 (359)
T cd07876         278 PSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRH  315 (359)
T ss_pred             ccccccccccchhHHHHHHHHhccCcccCCCHHHHhcC
Confidence                 011235678999999999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0596|consensus

Probab=99.91  E-value=7.9e-25  Score=216.58  Aligned_cols=153  Identities=21%  Similarity=0.321  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC-
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL-  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-  103 (423)
                      ...+-.|++.++.++|..||| |.||||.|.|+-+ |.+||+|||++...............+||+.||+||.+..... 
T Consensus       462 lk~ywkqML~aV~~IH~~gIV-HSDLKPANFLlVk-G~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~  539 (677)
T KOG0596|consen  462 LKFYWKQMLLAVKTIHQHGIV-HSDLKPANFLLVK-GRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSS  539 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhcee-ecCCCcccEEEEe-eeEEeeeechhcccCccccceeeccccCcccccCHHHHhhcccc
Confidence            456788999999999999998 9999999998854 7899999999988766655555677899999999999975332 


Q ss_pred             -------CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---C--CCCCCCCCCCCchHHHHHHHHHhhh
Q psy1840         104 -------PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---G--SGLRPDTSSLDCAPSIIACMRTCWE  171 (423)
Q Consensus       104 -------~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---~--~~~~p~~~~~~~~~~l~~Li~~C~~  171 (423)
                             .+.++++||||+|||||+|+.|+.||++.    ...+.++..   .  ....|..+.   ..++.++|+.||+
T Consensus       540 ~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~----~n~~aKl~aI~~P~~~Iefp~~~~---~~~li~~mK~CL~  612 (677)
T KOG0596|consen  540 RENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQI----INQIAKLHAITDPNHEIEFPDIPE---NDELIDVMKCCLA  612 (677)
T ss_pred             ccCCCcceeecCccchhhhhhHHHHHHhcCCchHHH----HHHHHHHHhhcCCCccccccCCCC---chHHHHHHHHHHh
Confidence                   13478999999999999999999999743    223333321   1  112333332   3349999999999


Q ss_pred             cCCCCCCCHHHHHHH
Q psy1840         172 EDPELRPDLRFVHHK  186 (423)
Q Consensus       172 ~dP~~RPt~~~I~~~  186 (423)
                      .||.+||++.++++.
T Consensus       613 rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  613 RDPKKRWSIPELLQH  627 (677)
T ss_pred             cCcccCCCcHHHhcC
Confidence            999999999999874

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.91  E-value=3.3e-24  Score=205.69  Aligned_cols=156  Identities=19%  Similarity=0.254  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++.......  .......++..|+|||.+....  
T Consensus       105 ~~~~~~qi~~~L~~LH~~~i~-H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~  181 (282)
T cd06643         105 IRVVCKQTLEALNYLHENKII-HRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--QRRDSFIGTPYWMAPEVVMCETSK  181 (282)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCCCcccEEEccCCCEEEccccccccccccc--cccccccccccccCHhhccccCCC
Confidence            678999999999999999998 99999999999999999999999986543221  1123446788899999985321  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ....+.++|||||||++|||++|+.||...  +..+....+......... .+..++.++.+++.+||+.+|++||++.+
T Consensus       182 ~~~~~~~~Dv~slGvil~el~~g~~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  258 (282)
T cd06643         182 DRPYDYKADVWSLGITLIEMAQIEPPHHEL--NPMRVLLKIAKSEPPTLA-QPSRWSSEFKDFLKKCLEKNVDARWTTTQ  258 (282)
T ss_pred             CCCCCccchhhhHHHHHHHHccCCCCcccc--CHHHHHHHHhhcCCCCCC-CccccCHHHHHHHHHHccCChhhCcCHHH
Confidence            113478999999999999999999999643  334444444333222111 12357889999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       259 il~~  262 (282)
T cd06643         259 LLQH  262 (282)
T ss_pred             HhcC
Confidence            8754

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.91  E-value=1.2e-24  Score=215.38  Aligned_cols=147  Identities=18%  Similarity=0.210  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||++......     .....||+.|+|||++.+..+ 
T Consensus       133 ~~~~~~qi~~aL~~LH~~~iv-HrDLkp~NILl~~~~~ikL~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-  205 (340)
T PTZ00426        133 GCFYAAQIVLIFEYLQSLNIV-YRDLKPENLLLDKDGFIKMTDFGFAKVVDTR-----TYTLCGTPEYIAPEILLNVGH-  205 (340)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ccCCCHHHEEECCCCCEEEecCCCCeecCCC-----cceecCChhhcCHHHHhCCCC-
Confidence            568899999999999999998 9999999999999999999999998764321     134568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++|||||||++|||++|..||..  .+.......+..+....|    ..+++.+.+++++||+.||++|+     +
T Consensus       206 --~~~~DiwSlGvil~ell~G~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~~l~~dp~~R~~~~~~~  277 (340)
T PTZ00426        206 --GKAADWWTLGIFIYEILVGCPPFYA--NEPLLIYQKILEGIIYFP----KFLDNNCKHLMKKLLSHDLTKRYGNLKKG  277 (340)
T ss_pred             --CccccccchhhHHHHHhcCCCCCCC--CCHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHcccCHHHcCCCCCCC
Confidence              8899999999999999999999974  344556666666543333    24678899999999999999995     7


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       278 ~~~~~~h  284 (340)
T PTZ00426        278 AQNVKEH  284 (340)
T ss_pred             HHHHHcC
Confidence            7777643

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.91  E-value=2.8e-24  Score=213.57  Aligned_cols=154  Identities=19%  Similarity=0.231  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||++|++ ||||||+||+++.++.+||+|||+++......   ......++..|+|||.+.+..+ 
T Consensus       121 ~~~~~~qi~~aL~~LH~~giv-HrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~-  195 (355)
T cd07874         121 MSYLLYQMLCGIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVILGMGY-  195 (355)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCChHHEEECCCCCEEEeeCcccccCCCcc---ccCCccccCCccCHHHHcCCCC-
Confidence            457899999999999999998 99999999999999999999999987543221   1234567889999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHH----------------------hcCCC----CCCC------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSV----------------------TQGSG----LRPD------  152 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i----------------------~~~~~----~~p~------  152 (423)
                        +.++|||||||++|+|++|+.||.+.... ..+...+                      .....    ..+.      
T Consensus       196 --~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (355)
T cd07874         196 --KENVDIWSVGCIMGEMVRHKILFPGRDYI-DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSL  272 (355)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccc
Confidence              88999999999999999999999753211 1111000                      00000    0000      


Q ss_pred             -----CCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         153 -----TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       153 -----~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                           ......+..+.+++.+||+.||++|||+.++++.
T Consensus       273 ~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         273 FPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             cccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence                 0011235678999999999999999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0600|consensus

Probab=99.91  E-value=2.7e-24  Score=211.12  Aligned_cols=167  Identities=22%  Similarity=0.243  Sum_probs=126.8

Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCcccc
Q psy1840          14 NPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK   93 (423)
Q Consensus        14 ~p~~~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~   93 (423)
                      +|.-.|..|.- -.++.||+.||+|+|++|++ |||||.+|||||++|.+||+|||++++........ .+...-|.+|.
T Consensus       210 ~p~vkft~~qI-Kc~mkQLl~Gl~~cH~~gvl-HRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~-~T~rVvTLWYR  286 (560)
T KOG0600|consen  210 SPGVKFTEPQI-KCYMKQLLEGLEYCHSRGVL-HRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAP-YTSRVVTLWYR  286 (560)
T ss_pred             CCCcccChHHH-HHHHHHHHHHHHHHhhcCee-eccccccceEEcCCCCEEeccccceeeccCCCCcc-cccceEEeecc
Confidence            44445666553 48999999999999999998 99999999999999999999999999775544322 34556789999


Q ss_pred             CCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcC--------------CCCCCCCC----
Q psy1840          94 APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQG--------------SGLRPDTS----  154 (423)
Q Consensus        94 APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~--------------~~~~p~~~----  154 (423)
                      |||++.|..  .|+.+.|+||.|||+.||+.|++.|.+... ..-+.|.+++..              ..++|..+    
T Consensus       287 pPELLLG~t--~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~  364 (560)
T KOG0600|consen  287 PPELLLGAT--SYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRR  364 (560)
T ss_pred             ChHHhcCCc--ccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccch
Confidence            999999876  469999999999999999999999975321 111122222211              01111111    


Q ss_pred             ----CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         155 ----SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       155 ----~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                          ....++...+|+..+|..||++|.|+.+++.
T Consensus       365 l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  365 LRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             HHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence                1346788999999999999999999998765

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.91  E-value=4.4e-24  Score=203.24  Aligned_cols=158  Identities=27%  Similarity=0.547  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccc-cc--cCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQER-KL--RRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~-~~--~gt~~y~APE~l~~  100 (423)
                      ..+.++.|++.|+.|||++|++ ||||||+||+++.++.+||+|||++............. ..  ..+..|+|||.+.+
T Consensus       107 ~~~~i~~~l~~al~~lH~~g~~-H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  185 (269)
T cd05065         107 QLVGMLRGIAAGMKYLSEMNYV-HRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAY  185 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEe-ecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhcc
Confidence            3689999999999999999998 99999999999999999999999987653322111111 11  12346999999876


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      ..+   +.++|||||||++||+++ |..||..  ....++...+...... |  ....++..+.+++.+||+.+|++||+
T Consensus       186 ~~~---~~~~DvwslG~~l~e~l~~g~~p~~~--~~~~~~~~~i~~~~~~-~--~~~~~~~~~~~li~~~l~~~p~~Rp~  257 (269)
T cd05065         186 RKF---TSASDVWSYGIVMWEVMSYGERPYWD--MSNQDVINAIEQDYRL-P--PPMDCPTALHQLMLDCWQKDRNARPK  257 (269)
T ss_pred             Ccc---cchhhhhhhHHHHHHHhcCCCCCCCC--CCHHHHHHHHHcCCcC-C--CcccCCHHHHHHHHHHcCCChhhCcC
Confidence            654   889999999999999886 9999964  3345566666543221 1  12367889999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy1840         180 LRFVHHKLKEM  190 (423)
Q Consensus       180 ~~~I~~~L~~i  190 (423)
                      +.+|+..|+.+
T Consensus       258 ~~~i~~~l~~~  268 (269)
T cd05065         258 FGQIVSTLDKM  268 (269)
T ss_pred             HHHHHHHHHhh
Confidence            99999887653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.91  E-value=5.6e-24  Score=200.15  Aligned_cols=155  Identities=27%  Similarity=0.481  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.+++.|+.|||+++++ ||||||+||+++.++.+||+|||++.................+..|+|||.+.+..+ 
T Consensus        95 ~~~~~~~~~~~l~~lH~~~i~-h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~-  172 (251)
T cd05041          95 LLQMSLDAAAGMEYLESKNCI-HRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRY-  172 (251)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-hhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCC-
Confidence            578999999999999999987 999999999999999999999999875432211111112233456999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|+||||+++||+++ |..||...  ........+.....  +. .+..++.++.+++.+||..+|++||++.++
T Consensus       173 --~~~~Di~slG~i~~~l~t~~~~p~~~~--~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~el  245 (251)
T cd05041         173 --TSESDVWSYGILLWETFSLGDTPYPGM--SNQQTRERIESGYR--MP-APQLCPEEIYRLMLQCWAYDPENRPSFSEI  245 (251)
T ss_pred             --CcchhHHHHHHHHHHHHhccCCCCccC--CHHHHHHHHhcCCC--CC-CCccCCHHHHHHHHHHhccChhhCcCHHHH
Confidence              889999999999999998 78888643  33444444444321  11 124578899999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      ++.|+
T Consensus       246 l~~l~  250 (251)
T cd05041         246 YNELQ  250 (251)
T ss_pred             HHHhh
Confidence            98774

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.91  E-value=4.8e-24  Score=201.27  Aligned_cols=150  Identities=25%  Similarity=0.523  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.|++.|+.|||+.|++ ||||||+||+++.++.+||+|||++.......     .....+..|+|||.+.+..+ 
T Consensus       102 ~~~~~~qi~~al~~lH~~~~~-H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~~y~~pe~~~~~~~-  174 (254)
T cd05083         102 LLQFSLDVAEGMEYLESKKLV-HRDLAARNILVSEDGVAKVSDFGLARVGSMGV-----DNSKLPVKWTAPEALKHKKF-  174 (254)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccccCcceEEEcCCCcEEECCCccceeccccC-----CCCCCCceecCHHHhccCCc-
Confidence            578999999999999999998 99999999999999999999999976532211     12233457999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|+||||+++|||++ |..||...  +..+....+..+..  +. ....++..+.+++.+||+.+|++||++.++
T Consensus       175 --~~~~Dv~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l  247 (254)
T cd05083         175 --SSKSDVWSYGVLLWEVFSYGRAPYPKM--SLKEVKECVEKGYR--ME-PPEGCPADVYVLMTSCWETEPKKRPSFHKL  247 (254)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCccC--CHHHHHHHHhCCCC--CC-CCCcCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              889999999999999997 88999643  34555565555422  22 223678999999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      ...|+
T Consensus       248 ~~~l~  252 (254)
T cd05083         248 REKLE  252 (254)
T ss_pred             HHHHc
Confidence            98775

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.91  E-value=2.7e-24  Score=202.92  Aligned_cols=151  Identities=19%  Similarity=0.360  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.|++ |+||||+||+++.++.++++|||.+........  ......++..|+|||.+.+... 
T Consensus       102 ~~~~~~~i~~al~~lH~~~i~-H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~-  177 (255)
T cd08219         102 ILQWFVQMCLGVQHIHEKRVL-HRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA--YACTYVGTPYYVPPEIWENMPY-  177 (255)
T ss_pred             HHHHHHHHHHHHHHHhhCCcc-cCCCCcceEEECCCCcEEEcccCcceeeccccc--ccccccCCccccCHHHHccCCc-
Confidence            578899999999999999998 999999999999999999999999875532221  1123457788999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|+|++|..||..  .+.......+..+...  .. +..++..+.+++.+||+.||++||++.+|+
T Consensus       178 --~~~~Dv~slG~i~~~l~~g~~p~~~--~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~li~~~l~~~P~~Rp~~~~il  250 (255)
T cd08219         178 --NNKSDIWSLGCILYELCTLKHPFQA--NSWKNLILKVCQGSYK--PL-PSHYSYELRSLIKQMFKRNPRSRPSATTIL  250 (255)
T ss_pred             --CchhhhhhhchhheehhhccCCCCC--CCHHHHHHHHhcCCCC--CC-CcccCHHHHHHHHHHHhCCcccCCCHHHHh
Confidence              8899999999999999999999974  3344555555544322  11 235678899999999999999999999987


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      ..
T Consensus       251 ~~  252 (255)
T cd08219         251 SR  252 (255)
T ss_pred             hc
Confidence            53

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.91  E-value=7.1e-24  Score=199.35  Aligned_cols=154  Identities=26%  Similarity=0.492  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|+|+.|++ ||||||+||+++.++.+||+|||++........ .......++..|+|||.+.+..+ 
T Consensus        95 ~~~~~~~i~~~l~~lH~~~~~-H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~-  171 (250)
T cd05085          95 LVKFALDAAAGMAYLESKNCI-HRDLAARNCLVGENNVLKISDFGMSRQEDDGIY-SSSGLKQIPIKWTAPEALNYGRY-  171 (250)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ecccChheEEEcCCCeEEECCCccceecccccc-ccCCCCCCcccccCHHHhccCCC-
Confidence            688999999999999999998 999999999999999999999999865332211 11112233566999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|++++ |..||...  ........+..+.  ++.. ...++..+.+++.+||+.+|++||++.++
T Consensus       172 --~~~~Di~slG~ll~~~~~~g~~p~~~~--~~~~~~~~~~~~~--~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~l  244 (250)
T cd05085         172 --SSESDVWSYGILLWETFSLGVCPYPGM--TNQQAREQVEKGY--RMSC-PQKCPDDVYKVMQRCWDYKPENRPKFSEL  244 (250)
T ss_pred             --CchhHHHHHHHHHHHHhcCCCCCCCCC--CHHHHHHHHHcCC--CCCC-CCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence              889999999999999998 89999743  3445555554432  2222 23578999999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      .+.|.
T Consensus       245 ~~~l~  249 (250)
T cd05085         245 QKELA  249 (250)
T ss_pred             HHHhc
Confidence            88763

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.91  E-value=6.6e-24  Score=202.34  Aligned_cols=158  Identities=23%  Similarity=0.491  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.||+.||.|||+++++ ||||||+||+++.++.+||+|||++................++..|+|||++....  
T Consensus       101 ~~~~~~~i~~al~~lH~~~i~-H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (268)
T cd05086         101 LQRMACEIAAGVTHMHKHNFL-HSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGG  179 (268)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCc
Confidence            357899999999999999988 99999999999999999999999975432221111223445778899999885421  


Q ss_pred             --CCCCCCccchHHHHHHHHHHHhC-CCCCCCCCCChHHHHHHHhcCCC---CCCCCCCCCchHHHHHHHHHhhhcCCCC
Q psy1840         103 --LPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSG---LRPDTSSLDCAPSIIACMRTCWEEDPEL  176 (423)
Q Consensus       103 --~~~~s~ksDVyS~Giil~elltg-~~Pf~~~~~~~~~i~~~i~~~~~---~~p~~~~~~~~~~l~~Li~~C~~~dP~~  176 (423)
                        ....+.++||||||+++|||+++ ..||..  ....+.+..+..+..   .+|.. ....++.+.+++..|| .+|++
T Consensus       180 ~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~c~-~~P~~  255 (268)
T cd05086         180 LITAEQTKPSNVWALGVTLWELFENAAQPYSH--LSDREVLNHVIKDQQVKLFKPQL-ELPYSERWYEVLQFCW-LSPEK  255 (268)
T ss_pred             cccCCCCCcchhHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHhhcccccCCCcc-CCCCcHHHHHHHHHHh-hCccc
Confidence              11347899999999999999974 667753  334455554433221   22322 2357888999999999 67999


Q ss_pred             CCCHHHHHHHH
Q psy1840         177 RPDLRFVHHKL  187 (423)
Q Consensus       177 RPt~~~I~~~L  187 (423)
                      ||++.+|++.|
T Consensus       256 Rp~~~~i~~~l  266 (268)
T cd05086         256 RATAEEVHRLL  266 (268)
T ss_pred             CCCHHHHHHHh
Confidence            99999998876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=1.9e-24  Score=208.20  Aligned_cols=150  Identities=22%  Similarity=0.325  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||++++++.++|+|||++........   .....|+..|+|||.+.+..+ 
T Consensus       104 ~~~~~~qi~~~l~~lH~~~iv-H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~-  178 (285)
T cd05605         104 AVFYAAEITCGLEDLHRERIV-YRDLKPENILLDDYGHIRISDLGLAVEIPEGET---IRGRVGTVGYMAPEVVKNERY-  178 (285)
T ss_pred             HHHHHHHHHHHHHHHHHCCcE-ecCCCHHHEEECCCCCEEEeeCCCceecCCCCc---cccccCCCCccCcHHhcCCCC-
Confidence            578899999999999999998 999999999999999999999999876432211   123467889999999976554 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCCh--HHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD--EEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP----  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~--~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP----  178 (423)
                        +.++||||+|+++||+++|+.||.......  .++...+....    ......++..+.+++.+||+.||.+||    
T Consensus       179 --~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05605         179 --TFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQ----EEYSEKFSEAARSICRQLLTKDPGFRLGCRG  252 (285)
T ss_pred             --CccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcc----cccCcccCHHHHHHHHHHccCCHHHhcCCCC
Confidence              889999999999999999999997532211  22233332221    112235788999999999999999999    


Q ss_pred             -CHHHHHH
Q psy1840         179 -DLRFVHH  185 (423)
Q Consensus       179 -t~~~I~~  185 (423)
                       ++.+++.
T Consensus       253 ~~~~~l~~  260 (285)
T cd05605         253 EGAEEVKA  260 (285)
T ss_pred             CCHHHHhc
Confidence             6777654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=2.8e-24  Score=220.21  Aligned_cols=158  Identities=20%  Similarity=0.223  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++...............||..|+|||++.+..+ 
T Consensus       262 ~~~i~~qi~~aL~yLH~~gIv-HrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~-  339 (461)
T PHA03211        262 VTAVARQLLSAIDYIHGEGII-HRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPY-  339 (461)
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-ECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCC-
Confidence            679999999999999999988 999999999999999999999999876543322222234568999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC------CChHHHHHHHhcCCCC------------------------CCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR------MTDEEIITSVTQGSGL------------------------RPDTS  154 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~------~~~~~i~~~i~~~~~~------------------------~p~~~  154 (423)
                        +.++|||||||++|||++|..|+....      ....++...+......                        ++...
T Consensus       340 --~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  417 (461)
T PHA03211        340 --TPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYT  417 (461)
T ss_pred             --CchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccC
Confidence              899999999999999999876543211      1123333333322110                        00000


Q ss_pred             ------CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         155 ------SLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       155 ------~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                            ....+..+.+|+.+||+.||.+|||+.++++.
T Consensus       418 ~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        418 RPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             CcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence                  01234578999999999999999999999864

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.91  E-value=1.9e-24  Score=212.73  Aligned_cols=146  Identities=18%  Similarity=0.317  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+++++ ||||||+||+++.++.+||+|||+++......  .......|+..|+|||++.+..+ 
T Consensus        98 ~~~i~~qi~~~l~~lH~~~iv-H~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (329)
T cd05618          98 ARFYSAEISLALNYLHERGII-YRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDY-  173 (329)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eCCCCHHHEEECCCCCEEEeeCCccccccCCC--CccccccCCccccCHHHHcCCCC-
Confidence            578999999999999999998 99999999999999999999999986532211  11234578899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCC-------ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-------TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~-------~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                        +.++|||||||++|||++|..||.....       ....+...+.......|    ..++..+.+++++||+.||.+|
T Consensus       174 --~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p----~~~~~~~~~ll~~~L~~dP~~R  247 (329)
T cd05618         174 --GFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP----RSLSVKAASVLKSFLNKDPKER  247 (329)
T ss_pred             --CCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHhcCCHHHc
Confidence              8899999999999999999999953211       11223333333322222    3567899999999999999999


Q ss_pred             CCH
Q psy1840         178 PDL  180 (423)
Q Consensus       178 Pt~  180 (423)
                      |+.
T Consensus       248 ~~~  250 (329)
T cd05618         248 LGC  250 (329)
T ss_pred             CCC
Confidence            984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.91  E-value=2.2e-24  Score=210.60  Aligned_cols=158  Identities=16%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE----cCCccEEEeccCCcccccCCCcc-cccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI----DSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl----d~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||+    +.++.+||+|||+++........ .......+|+.|+|||++.
T Consensus       110 ~~~i~~qi~~al~~LH~~~iv-HrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  188 (317)
T cd07868         110 VKSLLYQILDGIHYLHANWVL-HRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLL  188 (317)
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-cCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHc
Confidence            468999999999999999988 99999999999    46689999999998765432211 1223456788999999987


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-------HHHHHHHhcCC-------------------------
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-------EEIITSVTQGS-------------------------  147 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-------~~i~~~i~~~~-------------------------  147 (423)
                      +..  .++.++||||+||++|||++|+.||.......       ...+..+....                         
T Consensus       189 ~~~--~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (317)
T cd07868         189 GAR--HYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFR  266 (317)
T ss_pred             CCC--CcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhh
Confidence            643  23889999999999999999999996322110       01111111000                         


Q ss_pred             ---CCCC------CCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         148 ---GLRP------DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       148 ---~~~p------~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                         ....      .......+.++.+++.+||+.||.+|||+.++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~  313 (317)
T cd07868         267 RNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ  313 (317)
T ss_pred             ccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhc
Confidence               0000      0001123457889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.91  E-value=5.8e-24  Score=200.60  Aligned_cols=150  Identities=19%  Similarity=0.387  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ..+++.|++.|+.|||+.|++ ||||||+||+++.++.++|+|||++........  ......+++.|+|||.+.+... 
T Consensus       104 ~~~~~~~l~~~l~~lH~~~i~-H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~-  179 (257)
T cd08223         104 VVEWFVQIAMALQYLHEKHIL-HRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD--MASTLIGTPYYMSPELFSNKPY-  179 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccCCCchhEEEecCCcEEEecccceEEecccCC--ccccccCCcCccChhHhcCCCC-
Confidence            679999999999999999998 999999999999999999999999876532221  1234457788999999887654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||++++++++|+.||...  +.......+..+..  +.. ....++.+.+++.+||+.+|++||++.+++
T Consensus       180 --~~~~Dv~slG~il~~l~~g~~~~~~~--~~~~~~~~~~~~~~--~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  252 (257)
T cd08223         180 --NYKSDVWALGCCVYEMATLKHAFNAK--DMNSLVYRIIEGKL--PPM-PKDYSPELGELIATMLSKRPEKRPSVKSIL  252 (257)
T ss_pred             --CchhhhHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHhcCC--CCC-ccccCHHHHHHHHHHhccCcccCCCHHHHh
Confidence              78999999999999999999999643  33444444444322  222 235788999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      .
T Consensus       253 ~  253 (257)
T cd08223         253 R  253 (257)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.91  E-value=8.7e-25  Score=214.93  Aligned_cols=156  Identities=16%  Similarity=0.187  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++......... ......+++.|+|||++....  
T Consensus       104 ~~~~~~qi~~aL~~lH~~~i~-H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~  181 (330)
T cd05601         104 AQFYLAELVLAIHSVHQMGYV-HRDIKPENVLIDRTGHIKLADFGSAARLTANKMV-NSKLPVGTPDYIAPEVLTTMNGD  181 (330)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-cccCchHheEECCCCCEEeccCCCCeECCCCCce-eeecccCCccccCHHHhcccccc
Confidence            457889999999999999998 9999999999999999999999998765432211 223346888999999986421  


Q ss_pred             -CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 -LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 -~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                       ...++.++|||||||++|||++|..||...  +..+....+..............++..+.+++..||. +|.+||++.
T Consensus       182 ~~~~~~~~~DiwslG~il~el~~g~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~  258 (330)
T cd05601         182 GKGTYGVECDWWSLGVIAYEMIYGRSPFHEG--TSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYE  258 (330)
T ss_pred             ccCCCCCcceeecccceeeeeccCCCCCCCC--CHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHH
Confidence             113478999999999999999999999642  3344555554432211111122578899999999997 999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      +++.
T Consensus       259 ~l~~  262 (330)
T cd05601         259 GLCC  262 (330)
T ss_pred             HHhC
Confidence            9875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=7.1e-25  Score=215.64  Aligned_cols=151  Identities=19%  Similarity=0.269  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||+.|++ ||||||+|||++.++.+||+|||++.......  .......|+..|+|||.+.+..  
T Consensus        98 ~~~~~~qil~al~~LH~~~iv-HrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~--  172 (330)
T cd05586          98 AKFYIAELVLALEHLHKYDIV-YRDLKPENILLDATGHIALCDFGLSKANLTDN--KTTNTFCGTTEYLAPEVLLDEK--  172 (330)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eccCCHHHeEECCCCCEEEecCCcCcCCCCCC--CCccCccCCccccCHHHHcCCC--
Confidence            467899999999999999988 99999999999999999999999986532221  1123456889999999987543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC----CH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP----DL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP----t~  180 (423)
                      .++.++|||||||++|||++|..||..  ....+....+..+....|   ...++.++.+++++||+.||.+||    ++
T Consensus       173 ~~~~~~DvwslGvil~elltG~~Pf~~--~~~~~~~~~i~~~~~~~~---~~~~~~~~~~li~~~L~~~P~~R~~~~~~~  247 (330)
T cd05586         173 GYTKHVDFWSLGVLVFEMCCGWSPFYA--EDTQQMYRNIAFGKVRFP---KNVLSDEGRQFVKGLLNRNPQHRLGAHRDA  247 (330)
T ss_pred             CCCCccceeccccEEEEeccCCCCCCC--CCHHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCCCHHHCCCCCCCH
Confidence            237899999999999999999999964  344566666665543322   234688999999999999999998    45


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .++++
T Consensus       248 ~~ll~  252 (330)
T cd05586         248 VELKE  252 (330)
T ss_pred             HHHhc
Confidence            55544

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.91  E-value=3.4e-24  Score=213.74  Aligned_cols=153  Identities=22%  Similarity=0.235  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||++|++ ||||||+||+++.++.+||+|||+++......   ......++..|+|||++.+..+ 
T Consensus       128 ~~~~~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~-  202 (364)
T cd07875         128 MSYLLYQMLCGIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVILGMGY-  202 (364)
T ss_pred             HHHHHHHHHHHHHHHhhCCee-cCCCCHHHEEECCCCcEEEEeCCCccccCCCC---cccCCcccCCcCCHHHHhCCCC-
Confidence            457899999999999999998 99999999999999999999999987543221   1234567889999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-------------------CCCCC------------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-------------------LRPDT------------  153 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-------------------~~p~~------------  153 (423)
                        +.++|||||||++|||++|+.||....  ..+....+.....                   .+|..            
T Consensus       203 --~~~~DiwSlG~il~ell~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (364)
T cd07875         203 --KENVDIWSVGCIMGEMIKGGVLFPGTD--HIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV  278 (364)
T ss_pred             --CchhhHHhHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccc
Confidence              889999999999999999999996432  2222221111000                   00000            


Q ss_pred             -------CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         154 -------SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       154 -------~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                             .....+..+.+++.+|++.||.+|||+.++++.
T Consensus       279 ~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         279 LFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             cccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                   001134578999999999999999999998764

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.91  E-value=2.1e-24  Score=212.38  Aligned_cols=145  Identities=19%  Similarity=0.330  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||++.+..+ 
T Consensus        98 ~~~~~~qi~~~l~~lH~~~iv-H~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (329)
T cd05588          98 ARFYSAEISLALNFLHERGII-YRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPG--DTTSTFCGTPNYIAPEILRGEDY-  173 (329)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ecCCCHHHeEECCCCCEEECcCccccccccCC--CccccccCCccccCHHHHcCCCC-
Confidence            578999999999999999998 99999999999999999999999986422111  12234578899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCC-------ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-------TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~-------~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                        +.++|+|||||++|||++|+.||.....       ....+.+.+.......|    ..++.++.+++.+||+.||.+|
T Consensus       174 --~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~li~~~L~~dP~~R  247 (329)
T cd05588         174 --GFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIP----RSLSVKASSVLKGFLNKDPKER  247 (329)
T ss_pred             --CCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhccCHHHc
Confidence              8899999999999999999999963221       11223333333322222    3568899999999999999999


Q ss_pred             CC
Q psy1840         178 PD  179 (423)
Q Consensus       178 Pt  179 (423)
                      |+
T Consensus       248 ~~  249 (329)
T cd05588         248 LG  249 (329)
T ss_pred             CC
Confidence            97

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.91  E-value=7.8e-24  Score=199.92  Aligned_cols=151  Identities=26%  Similarity=0.556  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+++++ ||||||+||+++.++.+||+|||.++......     .....+..|+|||.+..... 
T Consensus       104 ~~~~~~qi~~~l~~lh~~~i~-H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~-  176 (256)
T cd05039         104 QLGFALDVCEGMEYLEEKNFV-HRDLAARNVLVSEDLVAKVSDFGLAKEASQGQ-----DSGKLPVKWTAPEALREKKF-  176 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-chhcccceEEEeCCCCEEEccccccccccccc-----ccCCCcccccCchhhcCCcC-
Confidence            678999999999999999998 99999999999999999999999987652211     12234456999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||..  .+..++...+..+.  ++.. ...+++.+.+++.+||..+|++||++.++
T Consensus       177 --~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~l  249 (256)
T cd05039         177 --STKSDVWSFGILLWEIYSFGRVPYPR--IPLKDVVPHVEKGY--RMEA-PEGCPPEVYKVMKDCWELDPAKRPTFKQL  249 (256)
T ss_pred             --CcHHHHHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHhcCC--CCCC-ccCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence              789999999999999997 9999864  34455555555432  2222 23578999999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      +..|+.
T Consensus       250 ~~~l~~  255 (256)
T cd05039         250 REQLAL  255 (256)
T ss_pred             HHHHhc
Confidence            998864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>PTZ00284 protein kinase; Provisional

Probab=99.91  E-value=1.4e-24  Score=223.85  Aligned_cols=151  Identities=17%  Similarity=0.229  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCc----------------cEEEeccCCcccccCCCccccccccc
Q psy1840          25 SISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRW----------------VLQIADFGLHAFKAGQDETGQERKLR   87 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~----------------~vKL~DFGla~~~~~~~~~~~~~~~~   87 (423)
                      ...++.||+.||.|||+ .|+| ||||||+|||++.++                .+||+|||.+....     .......
T Consensus       233 ~~~i~~qi~~aL~yLH~~~gIi-HrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~-----~~~~~~~  306 (467)
T PTZ00284        233 LAQIIFQTGVALDYFHTELHLM-HTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDER-----HSRTAIV  306 (467)
T ss_pred             HHHHHHHHHHHHHHHHhcCCee-cCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCc-----ccccccc
Confidence            46899999999999998 4888 999999999998765                49999999865321     1123457


Q ss_pred             CCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC--------------------
Q psy1840          88 RRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS--------------------  147 (423)
Q Consensus        88 gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~--------------------  147 (423)
                      ||+.|+|||++.+..+   +.++|||||||++|||++|+.||....  ..+.+..+....                    
T Consensus       307 gt~~Y~APE~~~~~~~---~~~~DiwSlGvil~elltG~~pf~~~~--~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~  381 (467)
T PTZ00284        307 STRHYRSPEVVLGLGW---MYSTDMWSMGCIIYELYTGKLLYDTHD--NLEHLHLMEKTLGRLPSEWAGRCGTEEARLLY  381 (467)
T ss_pred             CCccccCcHHhhcCCC---CcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHcCCCCHHHHhhccchhHHHHh
Confidence            8999999999987665   899999999999999999999997432  222222111100                    


Q ss_pred             ----CCCCCCC--------------CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         148 ----GLRPDTS--------------SLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       148 ----~~~p~~~--------------~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                          ..++...              .....+.+.+||.+||..||++|||+.+++++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~H  438 (467)
T PTZ00284        382 NSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTH  438 (467)
T ss_pred             hhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcC
Confidence                0000000              00123567899999999999999999999873

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.91  E-value=2.9e-24  Score=210.91  Aligned_cols=144  Identities=23%  Similarity=0.374  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||++.+..+ 
T Consensus       103 ~~~i~~qi~~al~~lH~~~iv-HrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  178 (323)
T cd05615         103 AVFYAAEISVGLFFLHRRGII-YRDLKLDNVMLDSEGHIKIADFGMCKEHMVDG--VTTRTFCGTPDYIAPEIIAYQPY-  178 (323)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCCHHHeEECCCCCEEEeccccccccCCCC--ccccCccCCccccCHHHHcCCCC-
Confidence            678999999999999999998 99999999999999999999999986532221  11234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|||||||++|||++|..||..  .....+...+.......|    ..++.++.+++.+||+.+|.+|++.
T Consensus       179 --~~~~DiwslGvil~elltG~~pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         179 --GKSVDWWAYGVLLYEMLAGQPPFDG--EDEDELFQSIMEHNVSYP----KSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             --CCccchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCC----ccCCHHHHHHHHHHcccCHhhCCCC
Confidence              8899999999999999999999974  345666666665443322    2467899999999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.91  E-value=6.6e-24  Score=214.40  Aligned_cols=158  Identities=26%  Similarity=0.430  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       241 ~~~~~~qi~~aL~~LH~~~iv-Hrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  318 (401)
T cd05107         241 LVGFSYQVANGMEFLASKNCV-HRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLY-  318 (401)
T ss_pred             HHHHHHHHHHHHHHHhcCCcC-cccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCC-
Confidence            578999999999999999998 999999999999999999999999875432221111223346678999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||..... .+.....+..+.  ++.. +..++.++.+++.+||..+|++||++.+|
T Consensus       319 --~~~~DvwslGvil~e~l~~g~~P~~~~~~-~~~~~~~~~~~~--~~~~-p~~~~~~l~~li~~cl~~~P~~RPs~~el  392 (401)
T cd05107         319 --TTLSDVWSFGILLWEIFTLGGTPYPELPM-NEQFYNAIKRGY--RMAK-PAHASDEIYEIMQKCWEEKFEIRPDFSQL  392 (401)
T ss_pred             --CcHhHHHHHHHHHHHHHHcCCCCCCCCCc-hHHHHHHHHcCC--CCCC-CCCCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence              889999999999999998 8889864321 222333333332  2222 23578999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         184 HHKLKEM  190 (423)
Q Consensus       184 ~~~L~~i  190 (423)
                      ++.|+.+
T Consensus       393 l~~L~~~  399 (401)
T cd05107         393 VHLVGDL  399 (401)
T ss_pred             HHHHHHH
Confidence            9998875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.91  E-value=3e-24  Score=214.82  Aligned_cols=158  Identities=15%  Similarity=0.161  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-C
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-L  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-~  103 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||++........ .......|++.|+|||.+.+.. .
T Consensus       144 ~~~~~~qi~~aL~~LH~~~iv-HrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~  221 (370)
T cd05596         144 ARFYTAEVVLALDAIHSMGFI-HRDVKPDNMLLDKSGHLKLADFGTCMKMDANGM-VRCDTAVGTPDYISPEVLKSQGGD  221 (370)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCCHHHEEEcCCCCEEEEeccceeeccCCCc-ccCCCCCCCcCeECHHHhccCCCC
Confidence            467889999999999999998 999999999999999999999999875432211 1123457899999999987543 1


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCC--CCCHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPEL--RPDLR  181 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~--RPt~~  181 (423)
                      ..++.++|||||||++|||++|..||...  +.......+..............++.++.+++.+|++.+|.+  ||++.
T Consensus       222 ~~~~~~~DiwSlGvilyelltG~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~  299 (370)
T cd05596         222 GYYGRECDWWSVGVFLYEMLVGDTPFYAD--SLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVD  299 (370)
T ss_pred             CCCCCceeeeehhHHHHHHHhCCCCcCCC--CHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHH
Confidence            13488999999999999999999999743  334555555543221111112357899999999999999987  99999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      +++..
T Consensus       300 ell~h  304 (370)
T cd05596         300 EIKSH  304 (370)
T ss_pred             HHhcC
Confidence            98765

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.91  E-value=6.7e-24  Score=189.33  Aligned_cols=148  Identities=24%  Similarity=0.363  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+       ||+||+++.++.+|+  ||++......       ...|++.|+|||++.+..+ 
T Consensus        19 ~~~i~~qi~~~L~~lH~~~-------kp~Nil~~~~~~~~~--fG~~~~~~~~-------~~~g~~~y~aPE~~~~~~~-   81 (176)
T smart00750       19 IWAVCLQCLRALRELHRQA-------KSGNILLTWDGLLKL--DGSVAFKTPE-------QSRVDPYFMAPEVIQGQSY-   81 (176)
T ss_pred             HHHHHHHHHHHHHHHHhcC-------CcccEeEcCccceee--ccceEeeccc-------cCCCcccccChHHhcCCCC-
Confidence            6899999999999999865       999999999999999  9998764322       1257889999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-CCCCCC--CCCCCchH--HHHHHHHHhhhcCCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-SGLRPD--TSSLDCAP--SIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-~~~~p~--~~~~~~~~--~l~~Li~~C~~~dP~~RPt  179 (423)
                        +.++|||||||++|||++|+.||...... ......+... ....+.  ......+.  ++.+++.+||+.+|++||+
T Consensus        82 --~~~~DiwSlG~il~elltg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~  158 (176)
T smart00750       82 --TEKADIYSLGITLYEALDYELPYNEEREL-SAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREA  158 (176)
T ss_pred             --cchhhHHHHHHHHHHHHhCCCCccccchh-cHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccC
Confidence              88999999999999999999999643221 2222222221 111111  01112333  6999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy1840         180 LRFVHHKLKEMNA  192 (423)
Q Consensus       180 ~~~I~~~L~~i~~  192 (423)
                      +.++++.+..+..
T Consensus       159 ~~~ll~~~~~~~~  171 (176)
T smart00750      159 ANHYLAHCRALFA  171 (176)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876643

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.91  E-value=1.6e-23  Score=204.83  Aligned_cols=179  Identities=17%  Similarity=0.288  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+++++ ||||+|+||+++.++.+||+|||++......      ....++..|+|||.+......
T Consensus       127 ~~~i~~~i~~~l~~lH~~~i~-H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~  199 (317)
T cd06635         127 IAAITHGALQGLAYLHSHNMI-HRDIKAGNILLTEPGQVKLADFGSASIASPA------NSFVGTPYWMAPEVILAMDEG  199 (317)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCcccEEECCCCCEEEecCCCccccCCc------ccccCCccccChhhhhcCCCC
Confidence            578999999999999999998 9999999999999999999999987643221      234577889999998532212


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      ..+.++||||||+++|||++|..||...  ........+.....  +......+++.+.+++.+||+.+|.+||++.+|+
T Consensus       200 ~~~~~~Dv~slGvil~el~~g~~p~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il  275 (317)
T cd06635         200 QYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQNES--PTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELL  275 (317)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHhccC--CCCCCccccHHHHHHHHHHccCCcccCcCHHHHH
Confidence            3488999999999999999999998643  33344444443322  2222335778899999999999999999999999


Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHHhhhcccc
Q psy1840         185 HKLKEMNAGLKANIFDNMLAIMEKYAFNLEG  215 (423)
Q Consensus       185 ~~L~~i~~~~~~~~~d~~~~~~e~~~~~lE~  215 (423)
                      +.+....... .....+.+...+++..++|.
T Consensus       276 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  305 (317)
T cd06635         276 KHMFVLRERP-ETVLIDLIQRTKDAVRELDN  305 (317)
T ss_pred             hChhhhccCc-ccchhhHHHHHHHHHHHHhh
Confidence            8776655433 33556777888888888886

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.91  E-value=2.5e-24  Score=204.54  Aligned_cols=157  Identities=17%  Similarity=0.231  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+......
T Consensus       108 ~~~~~~qi~~~l~~lH~~~i~-H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~  184 (267)
T cd06646         108 IAYVCRETLQGLAYLHSKGKM-HRDIKGANILLTDNGDVKLADFGVAAKITATIA--KRKSFIGTPYWMAPEVAAVEKNG  184 (267)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCCHHHEEECCCCCEEECcCccceeeccccc--ccCccccCccccCHhHcccccCC
Confidence            578899999999999999998 999999999999999999999999875432211  11234577889999988543222


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC-CCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT-SSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~-~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      ..+.++|||||||++|||++|+.||....  ..+....+.......+.. ....++..+.+++.+||+.+|++||++.+|
T Consensus       185 ~~~~~~Dvws~G~il~el~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i  262 (267)
T cd06646         185 GYNQLCDIWAVGITAIELAELQPPMFDLH--PMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERL  262 (267)
T ss_pred             CCcchhhHHHHHHHHHHHHhCCCCccccc--hhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHH
Confidence            34789999999999999999999985322  121111221211111111 123467899999999999999999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       263 l~~  265 (267)
T cd06646         263 LTH  265 (267)
T ss_pred             hcC
Confidence            764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.91  E-value=1.9e-23  Score=203.20  Aligned_cols=153  Identities=22%  Similarity=0.299  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||+++.++.+||+|||++......      ....++..|+|||.+.+....
T Consensus       117 ~~~~~~ql~~~L~~LH~~~i~-H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~  189 (307)
T cd06607         117 IAAICHGALQGLAYLHSHERI-HRDIKAGNILLTEPGTVKLADFGSASLVSPA------NSFVGTPYWMAPEVILAMDEG  189 (307)
T ss_pred             HHHHHHHHHHHHHHHHHCCce-ecCCCcccEEECCCCCEEEeecCcceecCCC------CCccCCccccCceeeeccCCC
Confidence            678999999999999999998 9999999999999999999999998654322      234567789999988532212


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      ..+.++||||||+++||+++|..||...  ........+...  ..+......++..+.+++.+||+.+|++||++.+|+
T Consensus       190 ~~~~~sDv~s~G~il~el~tg~~p~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  265 (307)
T cd06607         190 QYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQN--DSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELL  265 (307)
T ss_pred             CCCcccchHHHHHHHHHHHcCCCCCCCc--cHHHHHHHHhcC--CCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHh
Confidence            3478999999999999999999998642  333333333322  122333345788999999999999999999999998


Q ss_pred             HHHH
Q psy1840         185 HKLK  188 (423)
Q Consensus       185 ~~L~  188 (423)
                      ....
T Consensus       266 ~~~~  269 (307)
T cd06607         266 KHRF  269 (307)
T ss_pred             cChh
Confidence            7654

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.91  E-value=2.9e-24  Score=211.27  Aligned_cols=147  Identities=17%  Similarity=0.298  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||++.+..+ 
T Consensus        98 ~~~~~~qi~~al~~lH~~~iv-HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (327)
T cd05617          98 ARFYAAEICIALNFLHERGII-YRDLKLDNVLLDADGHIKLTDYGMCKEGLGPG--DTTSTFCGTPNYIAPEILRGEEY-  173 (327)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCCHHHEEEeCCCCEEEeccccceeccCCC--CceecccCCcccCCHHHHCCCCC-
Confidence            578999999999999999998 99999999999999999999999986432211  11234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC----CCh-HHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR----MTD-EEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~----~~~-~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                        +.++|||||||++|||++|..||....    ... ..+...+.......    +...+..+.+++.+||+.||.+|++
T Consensus       174 --~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~li~~~L~~dP~~R~~  247 (327)
T cd05617         174 --GFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRI----PRFLSVKASHVLKGFLNKDPKERLG  247 (327)
T ss_pred             --CchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCC----CCCCCHHHHHHHHHHhccCHHHcCC
Confidence              889999999999999999999995321    112 23333333322222    2346789999999999999999998


Q ss_pred             HH
Q psy1840         180 LR  181 (423)
Q Consensus       180 ~~  181 (423)
                      +.
T Consensus       248 ~~  249 (327)
T cd05617         248 CQ  249 (327)
T ss_pred             CC
Confidence            53

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.91  E-value=6.9e-24  Score=201.74  Aligned_cols=147  Identities=20%  Similarity=0.329  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc-------EEEeccCCcccccCCCcccccccccCCccccCCcc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV-------LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL   97 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~-------vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~   97 (423)
                      .++++.||+.||.|||+++++ ||||||+||+++.++.       +|++|||++......      ....++..|+|||.
T Consensus       107 ~~~i~~qi~~~l~~lH~~~iv-H~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~  179 (262)
T cd05077         107 KFKVAKQLASALSYLEDKDLV-HGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR------QECVERIPWIAPEC  179 (262)
T ss_pred             HHHHHHHHHHHHHHhhhCCeE-CCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCc------ccccccccccChhh
Confidence            689999999999999999998 9999999999987664       899999997644211      22356778999998


Q ss_pred             ccCCCCCCCCCccchHHHHHHHHHHH-hCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCC
Q psy1840          98 LRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPEL  176 (423)
Q Consensus        98 l~~~~~~~~s~ksDVyS~Giil~ell-tg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~  176 (423)
                      +....  ..+.++|||||||++|||+ +|..||....  ..+... ...+.. .   .....+.++.+++.+||+.||++
T Consensus       180 ~~~~~--~~~~~~DiwslG~~l~el~~~~~~p~~~~~--~~~~~~-~~~~~~-~---~~~~~~~~~~~li~~cl~~dp~~  250 (262)
T cd05077         180 VEDSK--NLSIAADKWSFGTTLWEICYNGEIPLKDKT--LAEKER-FYEGQC-M---LVTPSCKELADLMTHCMNYDPNQ  250 (262)
T ss_pred             hcCCC--CCCchhHHHHHHHHHHHHHhCCCCCCCCcc--hhHHHH-HHhcCc-c---CCCCChHHHHHHHHHHcCCChhh
Confidence            86432  2388999999999999998 5788886432  222221 111111 1   11234678999999999999999


Q ss_pred             CCCHHHHHHHH
Q psy1840         177 RPDLRFVHHKL  187 (423)
Q Consensus       177 RPt~~~I~~~L  187 (423)
                      ||++.+|++.+
T Consensus       251 Rp~~~~il~~~  261 (262)
T cd05077         251 RPFFRAIMRDI  261 (262)
T ss_pred             CcCHHHHHHhc
Confidence            99999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.91  E-value=1.2e-24  Score=213.72  Aligned_cols=146  Identities=20%  Similarity=0.247  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++......  .......|+..|+|||.+.+..+ 
T Consensus        98 ~~~~~~qi~~al~~lH~~giv-H~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (325)
T cd05604          98 ARFYAAEIASALGYLHSINIV-YRDLKPENILLDSQGHVVLTDFGLCKEGIAQS--DTTTTFCGTPEYLAPEVIRKQPY-  173 (325)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCCCHHHeEECCCCCEEEeecCCcccCCCCC--CCcccccCChhhCCHHHHcCCCC-
Confidence            567899999999999999998 99999999999999999999999986432221  12234568899999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                        +.++|||||||++|||++|..||..  .+..++...+.......+    ...+..+.+++.+|++.+|.+||++.+
T Consensus       174 --~~~~DvwslG~il~el~~G~~pf~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~ll~~ll~~~p~~R~~~~~  243 (325)
T cd05604         174 --DNTVDWWCLGAVLYEMLYGLPPFYC--RDVAEMYDNILHKPLVLR----PGASLTAWSILEELLEKDRQRRLGAKE  243 (325)
T ss_pred             --CCcCccccccceehhhhcCCCCCCC--CCHHHHHHHHHcCCccCC----CCCCHHHHHHHHHHhccCHHhcCCCCC
Confidence              8899999999999999999999974  344556666655432221    246788999999999999999998753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.91  E-value=4.3e-24  Score=203.39  Aligned_cols=154  Identities=18%  Similarity=0.309  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.|++.|++|||+++++ ||||||+||+++.++.+||+|||++.......  .......++..|+|||.+.+..  
T Consensus       113 ~~~~~~qi~~~l~~LH~~~iv-h~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~  189 (272)
T cd06637         113 IAYICREILRGLSHLHQHKVI-HRDIKGQNVLLTENAEVKLVDFGVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENP  189 (272)
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-cCCCCHHHEEECCCCCEEEccCCCceeccccc--ccCCcccccccccCHhHhccccCc
Confidence            567899999999999999998 99999999999999999999999987543221  1223456788899999986432  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ...++.++|||||||++|||++|..||....  ............  .+......++.++.+++.+||..+|.+||++.+
T Consensus       190 ~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~  265 (272)
T cd06637         190 DATYDFKSDLWSLGITAIEMAEGAPPLCDMH--PMRALFLIPRNP--APRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQ  265 (272)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCccccC--HHHHHHHHhcCC--CCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHH
Confidence            1134789999999999999999999996432  222222222211  122223357889999999999999999999999


Q ss_pred             HHH
Q psy1840         183 VHH  185 (423)
Q Consensus       183 I~~  185 (423)
                      +++
T Consensus       266 il~  268 (272)
T cd06637         266 LMK  268 (272)
T ss_pred             Hhh
Confidence            875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.91  E-value=9.9e-24  Score=199.96  Aligned_cols=155  Identities=27%  Similarity=0.536  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||++|++ ||||||+||+++.++.+||+|||.+........ .......++..|+|||.+..... 
T Consensus       104 ~~~~~~~l~~aL~~lH~~~i~-H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~-  180 (260)
T cd05073         104 LIDFSAQIAEGMAFIEQRNYI-HRDLRAANILVSASLVCKIADFGLARVIEDNEY-TAREGAKFPIKWTAPEAINFGSF-  180 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccccCcceEEEcCCCcEEECCCcceeeccCCCc-ccccCCcccccccCHhHhccCCc-
Confidence            578999999999999999998 999999999999999999999999875432211 11122234567999999976554 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|+||||+++|++++ |..||..  .+...+...+..+...  . .....+.++.+++.+||+.+|++||++.++
T Consensus       181 --~~~~Di~slG~~l~~l~t~g~~p~~~--~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l  253 (260)
T cd05073         181 --TIKSDVWSFGILLMEIVTYGRIPYPG--MSNPEVIRALERGYRM--P-RPENCPEELYNIMMRCWKNRPEERPTFEYI  253 (260)
T ss_pred             --CccccchHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHhCCCCC--C-CcccCCHHHHHHHHHHcccCcccCcCHHHH
Confidence              889999999999999998 8889974  3345555555554222  1 123578899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|+.
T Consensus       254 ~~~L~~  259 (260)
T cd05073         254 QSVLDD  259 (260)
T ss_pred             HHHHhc
Confidence            988764

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.91  E-value=8.9e-24  Score=203.04  Aligned_cols=159  Identities=25%  Similarity=0.423  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.|++.||+|||++|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..+
T Consensus       111 ~~~i~~~i~~aL~~lH~~gi~-H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~  189 (284)
T cd05079         111 QLKYAVQICKGMDYLGSRQYV-HRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKF  189 (284)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCC
Confidence            689999999999999999998 9999999999999999999999998765432221 11123445667999999877654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCC-------------CCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhh
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHL-------------RMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCW  170 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~-------------~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~  170 (423)
                         +.++||||||+++||++++..|+...             ..........+..+..  .+ ....++..+.+++.+||
T Consensus       190 ---~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~~l  263 (284)
T cd05079         190 ---YIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKR--LP-RPPNCPEEVYQLMRKCW  263 (284)
T ss_pred             ---CccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCcc--CC-CCCCCCHHHHHHHHHHc
Confidence               88999999999999999987664211             0111222222323221  11 12357899999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHH
Q psy1840         171 EEDPELRPDLRFVHHKLKEM  190 (423)
Q Consensus       171 ~~dP~~RPt~~~I~~~L~~i  190 (423)
                      +.+|++||++.++++.++.+
T Consensus       264 ~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         264 EFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             cCCcccCcCHHHHHHHHHhh
Confidence            99999999999999988765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG0589|consensus

Probab=99.91  E-value=2.2e-24  Score=213.04  Aligned_cols=156  Identities=19%  Similarity=0.343  Sum_probs=132.9

Q ss_pred             CChHHH-HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccc
Q psy1840          20 NIPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        20 ~~p~~~-l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l   98 (423)
                      ..|+++ ..+..|++.|+.|||++.|. |||||+.||+++.++.+||+|||+++......  ....+..||+.|++||++
T Consensus       102 ~f~E~~i~~~~~Q~~~av~ylH~~~iL-HRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~--~~a~tvvGTp~YmcPEil  178 (426)
T KOG0589|consen  102 LFPEERILKWFVQILLAVNYLHENRVL-HRDLKCANIFLTKDKKVKLGDFGLAKILNPED--SLASTVVGTPYYMCPEIL  178 (426)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhhhh-cccchhhhhhccccCceeecchhhhhhcCCch--hhhheecCCCcccCHHHh
Confidence            345665 58999999999999988887 99999999999999999999999999875443  233578899999999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      .+.++   +.|+|||||||++|||++-+.+|...  +..+++.++.++... |  .+..++.++..+|+.|+..+|+.||
T Consensus       179 ~d~pY---n~KSDiWsLGC~~yEm~~lk~aF~a~--~m~~Li~ki~~~~~~-P--lp~~ys~el~~lv~~~l~~~P~~RP  250 (426)
T KOG0589|consen  179 SDIPY---NEKSDIWSLGCCLYEMCTLKPAFKAS--NMSELILKINRGLYS-P--LPSMYSSELRSLVKSMLRKNPEHRP  250 (426)
T ss_pred             CCCCC---CccCcchhhcchHHHHHhcccccCcc--chHHHHHHHhhccCC-C--CCccccHHHHHHHHHHhhcCCccCC
Confidence            99876   99999999999999999999999754  457788888776521 1  1236789999999999999999999


Q ss_pred             CHHHHHHH
Q psy1840         179 DLRFVHHK  186 (423)
Q Consensus       179 t~~~I~~~  186 (423)
                      ++.+++..
T Consensus       251 sa~~LL~~  258 (426)
T KOG0589|consen  251 SALELLRR  258 (426)
T ss_pred             CHHHHhhC
Confidence            99999875

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.91  E-value=1.1e-24  Score=213.32  Aligned_cols=146  Identities=22%  Similarity=0.324  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++.......  .......|+..|+|||.+.+..+ 
T Consensus       100 ~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~-  175 (318)
T cd05582         100 VKFYLAELALALDHLHSLGII-YRDLKPENILLDEEGHIKLTDFGLSKESIDHE--KKAYSFCGTVEYMAPEVVNRRGH-  175 (318)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-cCCCCHHHeEECCCCcEEEeeccCCcccCCCC--CceecccCChhhcCHHHHcCCCC-
Confidence            578899999999999999988 99999999999999999999999987543221  12234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                        +.++|||||||++|||++|+.||..  .+..+....+.......|    ..+++.+.+++.+||+.||++||++.+
T Consensus       176 --~~~~DiwslG~il~el~tg~~p~~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         176 --TQSADWWSFGVLMFEMLTGSLPFQG--KDRKETMTMILKAKLGMP----QFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             --CCccceeccceEeeeeccCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence              8899999999999999999999974  344556666655433222    246889999999999999999999544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG1094|consensus

Probab=99.91  E-value=3e-24  Score=213.43  Aligned_cols=160  Identities=27%  Similarity=0.481  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      -++++.||+.||+||.+.+++ ||||.++|||+|.++++||+|||+++.+-............-...|||+|.+..+.+ 
T Consensus       639 ~vsi~tqiasgmaYLes~nfV-Hrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkF-  716 (807)
T KOG1094|consen  639 GVSICTQIASGMAYLESLNFV-HRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKF-  716 (807)
T ss_pred             hHHHHHHHHHHHHHHHhhchh-hccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccc-
Confidence            478999999999999999998 999999999999999999999999987655554444444455567999999987766 


Q ss_pred             CCCCccchHHHHHHHHHHHh--CCCCCCCCCCChHHHHHHHhcC---CCCC-CCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG--RQGPWGHLRMTDEEIITSVTQG---SGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt--g~~Pf~~~~~~~~~i~~~i~~~---~~~~-p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                        +.++|||+||+++||+++  ++.||.  .++++++++....-   .+.. -...+.-|+.++.++|.+||..+.++||
T Consensus       717 --ttaSDvWafgvTlwE~~~~C~e~Py~--~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~RP  792 (807)
T KOG1094|consen  717 --TTASDVWAFGVTLWEVFMLCREQPYS--QLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQRP  792 (807)
T ss_pred             --cchhhhhhhHHHHHHHHHHHhhCchh--hhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcCC
Confidence              999999999999999885  678997  46667777665421   1111 0111346899999999999999999999


Q ss_pred             CHHHHHHHHHHH
Q psy1840         179 DLRFVHHKLKEM  190 (423)
Q Consensus       179 t~~~I~~~L~~i  190 (423)
                      +|+++...|++.
T Consensus       793 sFe~lh~~lq~~  804 (807)
T KOG1094|consen  793 SFEQLHLFLQED  804 (807)
T ss_pred             CHHHHHHHHHHh
Confidence            999999888754

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.91  E-value=7.5e-24  Score=199.56  Aligned_cols=152  Identities=18%  Similarity=0.343  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ ||||+|+||+++.++.+||+|||++........  ......++..|+|||.+.+... 
T Consensus       101 ~~~~~~~l~~~l~~lh~~~i~-H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~-  176 (256)
T cd06612         101 IAAILYQTLKGLEYLHSNKKI-HRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGY-  176 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCcceEEECCCCcEEEcccccchhcccCcc--ccccccCCccccCHHHHhcCCC-
Confidence            678999999999999999998 999999999999999999999999876543221  1223456788999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||+++|+|++|+.||....  .......+........ .....++..+.+++.+||+.+|++||++.+|+
T Consensus       177 --~~~~Di~s~G~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il  251 (256)
T cd06612         177 --NNKADIWSLGITAIEMAEGKPPYSDIH--PMRAIFMIPNKPPPTL-SDPEKWSPEFNDFVKKCLVKDPEERPSAIQLL  251 (256)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCcc--hhhhhhhhccCCCCCC-CchhhcCHHHHHHHHHHHhcChhhCcCHHHHh
Confidence              889999999999999999999997432  2222222222111111 11234678999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      .
T Consensus       252 ~  252 (256)
T cd06612         252 Q  252 (256)
T ss_pred             c
Confidence            5

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.91  E-value=3.3e-24  Score=210.07  Aligned_cols=145  Identities=20%  Similarity=0.236  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++......  .......|++.|+|||.+.+..+ 
T Consensus        98 ~~~~~~qi~~~L~~lH~~~iv-H~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  173 (321)
T cd05603          98 ARFYAAEVASAIGYLHSLNII-YRDLKPENILLDSQGHVVLTDFGLCKEGVEPE--ETTSTFCGTPEYLAPEVLRKEPY-  173 (321)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eccCCHHHeEECCCCCEEEccCCCCccCCCCC--CccccccCCcccCCHHHhcCCCC-
Confidence            457899999999999999998 99999999999999999999999976432211  12234568899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                        +.++|||||||++|||++|..||...  +..++...+.......|    ...+..+.+++.+||+.+|.+||+..
T Consensus       174 --~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~----~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         174 --DRTVDWWCLGAVLYEMLYGLPPFYSR--DVSQMYDNILHKPLQLP----GGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             --CCcCcccccchhhhhhhcCCCCCCCC--CHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHccCCHhhcCCCC
Confidence              88999999999999999999999743  34555666655432222    24678899999999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0658|consensus

Probab=99.91  E-value=3.6e-24  Score=203.54  Aligned_cols=152  Identities=20%  Similarity=0.229  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-ccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      -...||.+||.|||+.||+ ||||||.|+|+|.+ |.+||||||-|+.+......   .+...+..|.|||.+.|..  .
T Consensus       129 LYt~Qlfrgl~yLh~~~Ic-HRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epn---iSYicSRyYRaPELifga~--~  202 (364)
T KOG0658|consen  129 LYTYQLFRGLAYLHSHGIC-HRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPN---ISYICSRYYRAPELIFGAT--E  202 (364)
T ss_pred             HHHHHHHHHHHHHHhcCcc-cCCCChheEEEcCCCCeEEeccCCcceeeccCCCc---eeEEEeccccCHHHHcCcc--c
Confidence            4689999999999999998 99999999999966 99999999999977544433   3456678899999998865  4


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh--------------cC--CCCCCCC--------CCCCchHH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT--------------QG--SGLRPDT--------SSLDCAPS  161 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~--------------~~--~~~~p~~--------~~~~~~~~  161 (423)
                      ++.+.||||.|||+.||+.|+.-|.+.. ...++.+-+.              ..  ....|..        .....+++
T Consensus       203 Yt~~IDiWSaGCV~aELl~g~plFpG~s-~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d  281 (364)
T KOG0658|consen  203 YTTSIDIWSAGCVMAELLKGQPLFPGDS-SVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPD  281 (364)
T ss_pred             cCceeEEhhhhHHHHHHhcCCcccCCCC-HHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHH
Confidence            6999999999999999999999997632 1122211111              00  0001111        22457899


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         162 IIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       162 l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..+++.+++..+|.+|.+..+++.
T Consensus       282 ~~dll~~~L~Y~P~~R~~~~~~l~  305 (364)
T KOG0658|consen  282 ALDLLSKLLQYSPSKRLSALEALA  305 (364)
T ss_pred             HHHHHHHHhccChhhcCCHHHHhc
Confidence            999999999999999999988765

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=5e-24  Score=212.16  Aligned_cols=155  Identities=19%  Similarity=0.239  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++......   ......|+..|+|||++.+..+ 
T Consensus       159 ~~~i~~qi~~aL~~LH~~~iv-HrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~-  233 (357)
T PHA03209        159 ALIIEKQILEGLRYLHAQRII-HRDVKTENIFINDVDQVCIGDLGAAQFPVVAP---AFLGLAGTVETNAPEVLARDKY-  233 (357)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEECCCCCEEEecCccccccccCc---ccccccccccccCCeecCCCCC-
Confidence            678999999999999999998 99999999999999999999999987532221   1234568889999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCC-CCCCCCh--------HHHHHHHhcC---CCCCC---------------------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPW-GHLRMTD--------EEIITSVTQG---SGLRP---------------------  151 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf-~~~~~~~--------~~i~~~i~~~---~~~~p---------------------  151 (423)
                        +.++|||||||++|||+++..|+ .......        ..+...+...   ....+                     
T Consensus       234 --~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (357)
T PHA03209        234 --NSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQP  311 (357)
T ss_pred             --CchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCc
Confidence              89999999999999999865544 3221111        1111111110   00000                     


Q ss_pred             -----CCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         152 -----DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       152 -----~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                           ......++..+..+|.+||+.||.+|||+.+++..
T Consensus       312 ~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~h  351 (357)
T PHA03209        312 YTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNY  351 (357)
T ss_pred             ccccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcC
Confidence                 00112456677789999999999999999998764

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.91  E-value=6e-24  Score=205.54  Aligned_cols=153  Identities=17%  Similarity=0.288  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+... 
T Consensus       120 ~~~~~~qi~~~l~~LH~~~iv-H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~-  195 (292)
T cd06658         120 IATVCLSVLRALSYLHNQGVI-HRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP--KRKSLVGTPYWMAPEVISRLPY-  195 (292)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecCCCHHHEEEcCCCCEEEccCcchhhcccccc--cCceeecCccccCHHHHccCCC-
Confidence            679999999999999999988 999999999999999999999999865432221  1233467888999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||+++||+++|..||...  ...+....+......... .....+..+.+++.+||..||.+|||+.+++
T Consensus       196 --~~~~Dv~slGvil~el~~g~~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il  270 (292)
T cd06658         196 --GTEVDIWSLGIMVIEMIDGEPPYFNE--PPLQAMRRIRDNLPPRVK-DSHKVSSVLRGFLDLMLVREPSQRATAQELL  270 (292)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhcCCCccc-cccccCHHHHHHHHHHccCChhHCcCHHHHh
Confidence              88999999999999999999999642  333344444332111111 1224678899999999999999999999998


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       271 ~~  272 (292)
T cd06658         271 QH  272 (292)
T ss_pred             hC
Confidence            75

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.91  E-value=4.5e-24  Score=210.97  Aligned_cols=152  Identities=18%  Similarity=0.214  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++......     .....+++.|+|||.+.+..  
T Consensus       120 ~~~i~~qi~~aL~~LH~~~iv-Hrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~--  191 (343)
T cd07878         120 VQFLIYQLLRGLKYIHSAGII-HRDLKPSNVAVNEDCELRILDFGLARQADDE-----MTGYVATRWYRAPEIMLNWM--  191 (343)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cccCChhhEEECCCCCEEEcCCccceecCCC-----cCCccccccccCchHhcCCc--
Confidence            568999999999999999998 9999999999999999999999998754321     13346788999999987632  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------------CCCCCCC----CCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------------SGLRPDT----SSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------------~~~~p~~----~~~~  157 (423)
                      .++.++|||||||++|+|++|+.||....  ..+.+..+...                       .+..+..    ....
T Consensus       192 ~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T cd07878         192 HYNQTVDIWSVGCIMAELLKGKALFPGND--YIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRG  269 (343)
T ss_pred             cCCchhhhHhHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccC
Confidence            23889999999999999999999996432  11111111110                       0000000    0123


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .++.+.+++.+||..||++|||+.+++..
T Consensus       270 ~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         270 ANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             CCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            46678999999999999999999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.91  E-value=5.6e-24  Score=204.87  Aligned_cols=150  Identities=22%  Similarity=0.295  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++.......   ......|+..|+|||.+.+..+ 
T Consensus       104 ~~~~~~ql~~~l~~lH~~~ii-H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~---~~~~~~g~~~~~aPE~~~~~~~-  178 (285)
T cd05632         104 ALFYAAEILCGLEDLHRENTV-YRDLKPENILLDDYGHIRISDLGLAVKIPEGE---SIRGRVGTVGYMAPEVLNNQRY-  178 (285)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ecCCCHHHEEECCCCCEEEecCCcceecCCCC---cccCCCCCcCccChHHhcCCCC-
Confidence            578999999999999999998 99999999999999999999999986543221   1123467889999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCC--hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC---
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD---  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt---  179 (423)
                        +.++|+||||+++||+++|..||......  ...+...+.....    .....++.++.+++..||+.||++||+   
T Consensus       179 --~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05632         179 --TLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEE----VYSAKFSEEAKSICKMLLTKDPKQRLGCQE  252 (285)
T ss_pred             --CcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhcccc----ccCccCCHHHHHHHHHHccCCHhHcCCCcc
Confidence              88999999999999999999999743211  1122222222211    122357889999999999999999999   


Q ss_pred             --HHHHHH
Q psy1840         180 --LRFVHH  185 (423)
Q Consensus       180 --~~~I~~  185 (423)
                        +.+++.
T Consensus       253 ~~~~~l~~  260 (285)
T cd05632         253 EGAGEVKR  260 (285)
T ss_pred             cChHHHHc
Confidence              555554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.91  E-value=1.1e-23  Score=202.08  Aligned_cols=159  Identities=25%  Similarity=0.405  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-ccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||++|++ ||||||+||+++.++.+||+|||++.......... ......++..|+|||.+.+..+
T Consensus       110 ~~~~~~~l~~aL~~LH~~~i~-H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  188 (284)
T cd05081         110 LLLYASQICKGMEYLGSKRYV-HRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKF  188 (284)
T ss_pred             HHHHHHHHHHHHHHHHHCCce-eccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCc
Confidence            578999999999999999998 99999999999999999999999987654322211 1111223445999999877654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC--------------hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHh
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--------------DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTC  169 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--------------~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C  169 (423)
                         +.++||||||+++|||++|..|+......              ...+...+....  .+. ....++.++.+++.+|
T Consensus       189 ---~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~li~~c  262 (284)
T cd05081         189 ---SVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNG--RLP-APPGCPAEIYAIMKEC  262 (284)
T ss_pred             ---ChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCC--cCC-CCCCCCHHHHHHHHHH
Confidence               88999999999999999987665321100              011112222221  111 1235788999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHH
Q psy1840         170 WEEDPELRPDLRFVHHKLKEM  190 (423)
Q Consensus       170 ~~~dP~~RPt~~~I~~~L~~i  190 (423)
                      |+.+|++|||+.+|...|..+
T Consensus       263 l~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         263 WNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             ccCChhhCCCHHHHHHHHHhc
Confidence            999999999999999988754

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.91  E-value=6.6e-24  Score=211.70  Aligned_cols=154  Identities=19%  Similarity=0.235  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc------------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET------------------------   80 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~------------------------   80 (423)
                      ...++.|++.||+|||+.|++ ||||||+|||++.++.+||+|||+++........                        
T Consensus       103 ~~~~~~qi~~aL~~lH~~giv-HrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (363)
T cd05628         103 TQFYIAETVLAIDSIHQLGFI-HRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRK  181 (363)
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-ecCCCHHHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccc
Confidence            578899999999999999998 9999999999999999999999998654221100                        


Q ss_pred             ---------cccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC--C
Q psy1840          81 ---------GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG--L  149 (423)
Q Consensus        81 ---------~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~--~  149 (423)
                               .......||+.|+|||++.+..+   +.++|||||||++|||++|..||..  .+..+....+.....  .
T Consensus       182 ~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~---~~~~DvwSlGvil~ell~G~~Pf~~--~~~~~~~~~i~~~~~~~~  256 (363)
T cd05628         182 AETWKRNRRQLAFSTVGTPDYIAPEVFMQTGY---NKLCDWWSLGVIMYEMLIGYPPFCS--ETPQETYKKVMNWKETLI  256 (363)
T ss_pred             cchhhhccccccccccCCccccCHHHHcCCCC---CCchhhhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCcCccc
Confidence                     00123478999999999987655   8899999999999999999999974  345566666654321  1


Q ss_pred             CCCCCCCCchHHHHHHHHHhhh--cCCCCCCCHHHHHHH
Q psy1840         150 RPDTSSLDCAPSIIACMRTCWE--EDPELRPDLRFVHHK  186 (423)
Q Consensus       150 ~p~~~~~~~~~~l~~Li~~C~~--~dP~~RPt~~~I~~~  186 (423)
                      .|.  ...+++++.+++.+++.  .++..||++.+|++.
T Consensus       257 ~p~--~~~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         257 FPP--EVPISEKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             CCC--cCCCCHHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            222  12467889999987543  334456899998764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0199|consensus

Probab=99.91  E-value=3.2e-24  Score=216.77  Aligned_cols=154  Identities=23%  Similarity=0.458  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-ccccccCCccccCCccccCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ..++.||+.||.||.++++| ||||..+|+|+-..-.|||+|||+.+.+....... ......-...|+|||.++...+ 
T Consensus       215 cdya~QiA~aM~YLeskrlv-HRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kF-  292 (1039)
T KOG0199|consen  215 CDYAMQIAKAMQYLESKRLV-HRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKF-  292 (1039)
T ss_pred             HHHHHHHHHHHHHHhhhhhh-hhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccc-
Confidence            47899999999999999998 99999999999999999999999998776444322 1122233456999999998766 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||+|||++|||++ |+.||.+  ...-.|++.+..+..+..   +..|++.+.++|++||..+|.+||||..|
T Consensus       293 --ShaSDvWmyGVTiWEMFtyGEePW~G--~~g~qIL~~iD~~erLpR---Pk~csedIY~imk~cWah~paDRptFsai  365 (1039)
T KOG0199|consen  293 --SHASDVWMYGVTIWEMFTYGEEPWVG--CRGIQILKNIDAGERLPR---PKYCSEDIYQIMKNCWAHNPADRPTFSAI  365 (1039)
T ss_pred             --cccchhhhhhhhHHhhhccCCCCCCC--CCHHHHHHhccccccCCC---CCCChHHHHHHHHHhccCCccccccHHHH
Confidence              999999999999999997 7889974  566788888886543321   23699999999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      .+.+-
T Consensus       366 r~~~~  370 (1039)
T KOG0199|consen  366 REDLV  370 (1039)
T ss_pred             HHhHH
Confidence            85543

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.91  E-value=6.2e-24  Score=212.54  Aligned_cols=156  Identities=22%  Similarity=0.312  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......++..|+|||.+.+..  
T Consensus       105 ~~~~~~qi~~aL~~LH~~~iv-H~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~--  180 (372)
T cd07853         105 VKVFLYQILRGLKYLHSAGIL-HRDIKPGNLLVNSNCVLKICDFGLARVEEPDES-KHMTQEVVTQYYRAPEILMGSR--  180 (372)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-CCCCChHHEEECCCCCEEeccccceeecccCcc-ccCCCCCcCCCcCCHHHHcCCC--
Confidence            568899999999999999998 999999999999999999999999875432211 1122345678899999987643  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh-----------------------cCCCCCCC-----CCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-----------------------QGSGLRPD-----TSSL  156 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~-----------------------~~~~~~p~-----~~~~  156 (423)
                      .++.++|||||||++|||++|+.||....  ..+.+..+.                       ......+.     ....
T Consensus       181 ~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (372)
T cd07853         181 HYTSAVDIWSVGCIFAELLGRRILFQAQS--PIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSS  258 (372)
T ss_pred             CCCcHHHHHhHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCC
Confidence            23789999999999999999999996432  222222211                       11111111     0113


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ..++++.+++.+||+.||++|||+.+++..
T Consensus       259 ~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         259 QATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             CCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence            457889999999999999999999998764

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.91  E-value=8.7e-24  Score=204.74  Aligned_cols=154  Identities=18%  Similarity=0.290  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+.+...
T Consensus       117 ~~~~i~~ql~~aL~~LH~~gi~-H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  193 (296)
T cd06654         117 QIAAVCRECLQALEFLHSNQVI-HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAY  193 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEEcCCCCEEECccccchhcccccc--ccCcccCCccccCHHHHcCCCC
Confidence            3678999999999999999988 999999999999999999999999765432211  1123467788999999877554


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|||||||++|+|++|+.||..... ...+........  .+.......+..+.+++.+||..+|++||++.+|
T Consensus       194 ---~~~~Dv~s~Gvil~~l~~g~~pf~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~ei  267 (296)
T cd06654         194 ---GPKVDIWSLGIMAIEMIEGEPPYLNENP-LRALYLIATNGT--PELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKEL  267 (296)
T ss_pred             ---CccchHHHHHHHHHHHHhCCCCCCCCCH-HHhHHHHhcCCC--CCCCCccccCHHHHHHHHHHCcCCcccCcCHHHH
Confidence               7899999999999999999999964321 122222222211  1111223577889999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      +..
T Consensus       268 l~~  270 (296)
T cd06654         268 LQH  270 (296)
T ss_pred             hhC
Confidence            873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.91  E-value=1.6e-23  Score=200.54  Aligned_cols=174  Identities=16%  Similarity=0.340  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.|++ |+||+|+||+++.++.++|+|||++.......  .......++..|+|||.+.+... 
T Consensus       103 ~~~~~~~l~~~l~~lh~~~i~-h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~-  178 (277)
T cd06641         103 IATILREILKGLDYLHSEKKI-HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ--IKRNTFVGTPFWMAPEVIKQSAY-  178 (277)
T ss_pred             HHHHHHHHHHHHHHHccCCee-cCCCCHHhEEECCCCCEEEeecccceecccch--hhhccccCCccccChhhhccCCC-
Confidence            678999999999999999998 99999999999999999999999986543221  11223456778999999876544 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+|||||++|++++|..||..  .........+..+.  .+. ....++.++.+++.+||+.+|++||++.+++
T Consensus       179 --~~~~Dv~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l  251 (277)
T cd06641         179 --DSKADIWSLGITAIELAKGEPPHSE--LHPMKVLFLIPKNN--PPT-LEGNYSKPLKEFVEACLNKEPSFRPTAKELL  251 (277)
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCCc--cchHHHHHHHhcCC--CCC-CCcccCHHHHHHHHHHccCChhhCcCHHHHH
Confidence              7899999999999999999999964  23344444443322  222 2335788999999999999999999999999


Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHHh
Q psy1840         185 HKLKEMNAGLKANIFDNMLAIMEKY  209 (423)
Q Consensus       185 ~~L~~i~~~~~~~~~d~~~~~~e~~  209 (423)
                      ..--......+.+...++++.+++|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~  276 (277)
T cd06641         252 KHKFIVRFAKKTSYLTELIDRYKRW  276 (277)
T ss_pred             hCHHHhhhhhccchHHHHHHHhhcc
Confidence            8644444555677788888887665

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.91  E-value=1.4e-23  Score=199.75  Aligned_cols=157  Identities=25%  Similarity=0.521  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccc-cccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ-ERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~-~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||++........... .....++..|+|||.+.+..+
T Consensus       108 ~~~i~~~i~~~l~~lH~~~i~-h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~  186 (267)
T cd05066         108 LVGMLRGIASGMKYLSDMGYV-HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKF  186 (267)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCcc
Confidence            688999999999999999988 999999999999999999999999876543221111 111223457999999987554


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|+||||+++||+++ |..||...  ...+....+..+.  +++. ...+++.+.+++.+||+.+|++||++.+
T Consensus       187 ---~~~~Dv~slG~~l~ell~~g~~p~~~~--~~~~~~~~~~~~~--~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~  258 (267)
T cd05066         187 ---TSASDVWSYGIVMWEVMSYGERPYWEM--SNQDVIKAIEEGY--RLPA-PMDCPAALHQLMLDCWQKDRNERPKFEQ  258 (267)
T ss_pred             ---CchhhhHHHHHHHHHHhcCCCCCcccC--CHHHHHHHHhCCC--cCCC-CCCCCHHHHHHHHHHcccCchhCCCHHH
Confidence               889999999999999886 99999643  3445556665542  2222 2357889999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1840         183 VHHKLKEM  190 (423)
Q Consensus       183 I~~~L~~i  190 (423)
                      +++.|+.+
T Consensus       259 i~~~l~~~  266 (267)
T cd05066         259 IVSILDKL  266 (267)
T ss_pred             HHHHHHhh
Confidence            99988764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.91  E-value=1.2e-23  Score=198.46  Aligned_cols=148  Identities=23%  Similarity=0.372  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-------cEEEeccCCcccccCCCcccccccccCCccccCCcc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-------VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL   97 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-------~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~   97 (423)
                      ++.++.||+.||.|||+.|++ ||||||+||+++.++       .+||+|||++......      ....++..|+|||.
T Consensus       103 ~~~~~~~i~~~l~~LH~~~i~-H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~y~aPE~  175 (259)
T cd05037         103 KLDVAKQLASALHYLEDKKLV-HGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSR------EERVERIPWIAPEC  175 (259)
T ss_pred             HHHHHHHHHHHHHHHhhCCee-cccCccceEEEecCccccCCceeEEeCCCCcccccccc------cccccCCCccChhh
Confidence            688999999999999999998 999999999999888       8999999998754321      22345567999999


Q ss_pred             ccCCCCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCC
Q psy1840          98 LRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPEL  176 (423)
Q Consensus        98 l~~~~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~  176 (423)
                      +.+.. ...+.++||||||+++||+++ |..||....  ..+......... ..+.    .....+.+++.+||..+|++
T Consensus       176 ~~~~~-~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~~li~~~l~~~p~~  247 (259)
T cd05037         176 IRNGQ-ASLTIAADKWSFGTTLLEICSNGEEPLSTLS--SSEKERFYQDQH-RLPM----PDCAELANLINQCWTYDPTK  247 (259)
T ss_pred             hcCCC-CCcchhhHHHHHHHHHHHHHhCCCCCcccCC--chhHHHHHhcCC-CCCC----CCchHHHHHHHHHhccChhh
Confidence            87752 134889999999999999999 577776443  222222222211 1111    12378999999999999999


Q ss_pred             CCCHHHHHHHH
Q psy1840         177 RPDLRFVHHKL  187 (423)
Q Consensus       177 RPt~~~I~~~L  187 (423)
                      ||++.+|++.|
T Consensus       248 Rpt~~~il~~l  258 (259)
T cd05037         248 RPSFRAILRDL  258 (259)
T ss_pred             CCCHHHHHHhc
Confidence            99999998865

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0594|consensus

Probab=99.91  E-value=6.7e-24  Score=201.56  Aligned_cols=155  Identities=23%  Similarity=0.252  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .-+++.||+.||+|||+++|+ ||||||+|+||+++|.+||+|||+++...-..  .......+|.+|.|||++.+..  
T Consensus       122 ik~~m~Qll~gl~~~H~~~Il-HRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~--~~yt~evvTlWYRaPEvLlGs~--  196 (323)
T KOG0594|consen  122 IKSFMRQLLRGLAFLHSHGIL-HRDLKPQNLLISSSGVLKLADFGLARAFSIPM--RTYTPEVVTLWYRAPEVLLGST--  196 (323)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cccCCcceEEECCCCcEeeeccchHHHhcCCc--ccccccEEEeeccCHHHhcCCC--
Confidence            468999999999999999998 99999999999999999999999998543222  2234567888999999999875  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--C----------------CCCCCCCC-C-------CCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--G----------------SGLRPDTS-S-------LDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--~----------------~~~~p~~~-~-------~~~  158 (423)
                      .++...||||+|||+.||++++.-|.+..  ..+.+..+-.  |                +...+... .       ...
T Consensus       197 ~Ys~~vDiWs~GcIfaEm~~~~~LFpG~s--e~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~  274 (323)
T KOG0594|consen  197 SYSTSVDIWSLGCIFAEMFTRRPLFPGDS--EIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKL  274 (323)
T ss_pred             cCCCCcchHhHHHHHHHHHhCCCCCCCCc--HHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhcccc
Confidence            25899999999999999999999887532  2332322221  0                00001000 1       122


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .+...+++..|++.+|.+|.++..++.+
T Consensus       275 ~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  275 DPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             CccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            3578999999999999999999988765

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.91  E-value=1.3e-23  Score=198.92  Aligned_cols=155  Identities=28%  Similarity=0.516  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+++++ ||||||+||+++.++.+||+|||++........ ........+..|+|||.+.+... 
T Consensus       105 ~~~~~~~i~~al~~lh~~~i~-h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~-  181 (261)
T cd05034         105 LVDMAAQIAEGMAYLESRNYI-HRDLAARNILVGENLVCKIADFGLARLIEDDEY-TAREGAKFPIKWTAPEAANYGRF-  181 (261)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCcchheEEEcCCCCEEECccccceeccchhh-hhhhccCCCccccCHHHhccCCc-
Confidence            578999999999999999988 999999999999999999999999875532211 11112234467999999887654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|+||||+++||+++ |+.||..  .+.......+..+..  +.. ...++.++.+++.+||+.+|++||++.++
T Consensus       182 --~~~~Di~slG~il~~l~t~g~~p~~~--~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l  254 (261)
T cd05034         182 --TIKSDVWSFGILLTEIVTYGRVPYPG--MTNREVLEQVERGYR--MPR-PPNCPEELYDLMLQCWDKDPEERPTFEYL  254 (261)
T ss_pred             --CchhHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCC--CCC-CCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence              889999999999999998 8999963  345556666654321  111 23468899999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      .+.|+.
T Consensus       255 ~~~l~~  260 (261)
T cd05034         255 QSFLED  260 (261)
T ss_pred             HHHHhc
Confidence            988764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG0659|consensus

Probab=99.91  E-value=9.4e-24  Score=192.60  Aligned_cols=157  Identities=20%  Similarity=0.253  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      -..-+++.++.+|++|||++.|+ ||||||.|+|++++|.+||+|||+++..........  ...-|.+|.|||.+.|..
T Consensus       101 a~iK~y~~m~LkGl~y~H~~~Il-HRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~--~~V~TRWYRAPELLfGsr  177 (318)
T KOG0659|consen  101 ADIKSYMLMTLKGLAYCHSKWIL-HRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQT--HQVVTRWYRAPELLFGSR  177 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh-cccCCccceEEcCCCcEEeecccchhccCCCCcccc--cceeeeeccChHHhccch
Confidence            33458999999999999999998 999999999999999999999999998765443322  226688999999998865


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--C---C---------------CCCCCC----CCCc
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--S---G---------------LRPDTS----SLDC  158 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~---~---------------~~p~~~----~~~~  158 (423)
                        .++...||||.|||+.||+-|.+-|.+.  ++-+.+..+-..  .   .               ..|..+    -..+
T Consensus       178 --~Yg~~VDmWavGCI~AELllr~P~fpG~--sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aa  253 (318)
T KOG0659|consen  178 --QYGTGVDMWAVGCIFAELLLRVPFFPGD--SDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAA  253 (318)
T ss_pred             --hcCCcchhhhHHHHHHHHHccCCCCCCC--chHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccc
Confidence              4589999999999999999988777643  222222222110  0   0               001111    1346


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +.+..+|+..+|..||.+|+++++.+++
T Consensus       254 s~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  254 SSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             cHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            7788999999999999999999998765

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.91  E-value=1.5e-23  Score=203.26  Aligned_cols=154  Identities=18%  Similarity=0.292  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.|+.|||+.|++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..+
T Consensus       116 ~~~~i~~~l~~al~~LH~~~i~-H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  192 (296)
T cd06655         116 QIAAVCRECLQALEFLHANQVI-HRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAY  192 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCCEEEccCccchhcccccc--cCCCcCCCccccCcchhcCCCC
Confidence            3689999999999999999998 999999999999999999999999775432221  1123457788999999877654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|||||||++|++++|..||....  ..+....+.... ..+......+++.+.+++.+||..||++||++.+|
T Consensus       193 ---~~~~Dv~slGvil~~lltg~~pf~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~i  266 (296)
T cd06655         193 ---GPKVDIWSLGIMAIEMVEGEPPYLNEN--PLRALYLIATNG-TPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKEL  266 (296)
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhcC-CcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHH
Confidence               789999999999999999999996432  222222232221 11111234578899999999999999999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      +..
T Consensus       267 l~~  269 (296)
T cd06655         267 LQH  269 (296)
T ss_pred             hhC
Confidence            763

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=4.9e-24  Score=212.40  Aligned_cols=155  Identities=17%  Similarity=0.233  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-----------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-----------------------   81 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-----------------------   81 (423)
                      ...++.||+.||+|||+.|++ ||||||+|||++.++.+||+|||++..........                       
T Consensus       103 ~~~~~~qi~~aL~~lH~~~iv-H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (364)
T cd05599         103 TRFYIAETILAIDSIHKLGYI-HRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSS  181 (364)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eccCCHHHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccc
Confidence            567899999999999999998 99999999999999999999999986532211000                       


Q ss_pred             -------------ccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC
Q psy1840          82 -------------QERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG  148 (423)
Q Consensus        82 -------------~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~  148 (423)
                                   ......||+.|+|||++.+..+   +.++|||||||++|||++|..||...  +..+....+.....
T Consensus       182 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~DiwSlG~il~el~~G~~Pf~~~--~~~~~~~~i~~~~~  256 (364)
T cd05599         182 KRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGY---NKECDWWSLGVIMYEMLVGYPPFCSD--NPQETYRKIINWKE  256 (364)
T ss_pred             cccccchhhcccccccccccCccccCHHHHcCCCC---CCeeeeecchhHHHHhhcCCCCCCCC--CHHHHHHHHHcCCC
Confidence                         0112458999999999977655   89999999999999999999999743  34555555544322


Q ss_pred             CCCCCCCCCchHHHHHHHHHhhhcCCCCCCC---HHHHHHH
Q psy1840         149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPD---LRFVHHK  186 (423)
Q Consensus       149 ~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt---~~~I~~~  186 (423)
                      ..+......+++++.+++.+|+. +|.+|++   +.+++..
T Consensus       257 ~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h  296 (364)
T cd05599         257 TLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSH  296 (364)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcC
Confidence            21111223568899999999996 9999998   7777653

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.91  E-value=1.1e-23  Score=200.29  Aligned_cols=157  Identities=18%  Similarity=0.254  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.|+.|||+.|++ |+||||+||+++.++.+||+|||++.......  .......++..|+|||.+.....
T Consensus       107 ~~~~~~~~i~~~l~~lH~~~i~-H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~  183 (267)
T cd06645         107 QIAYVSRETLQGLYYLHSKGKM-HRDIKGANILLTDNGHVKLADFGVSAQITATI--AKRKSFIGTPYWMAPEVAAVERK  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEECCCCCEEECcceeeeEccCcc--cccccccCcccccChhhhccccC
Confidence            3578999999999999999998 99999999999999999999999976543221  11234467889999998753221


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC-CCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT-SSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~-~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ...+.++|+|||||++|++++|..||....  ...............+.. ....++..+.+++.+||+.+|++||++.+
T Consensus       184 ~~~~~~~DvwSlG~il~~l~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  261 (267)
T cd06645         184 GGYNQLCDIWAVGITAIELAELQPPMFDLH--PMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEK  261 (267)
T ss_pred             CCCCchhhhHHHHHHHHHHhcCCCCccccc--chhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHH
Confidence            234789999999999999999999986432  122222222222111111 12356788999999999999999999998


Q ss_pred             HHH
Q psy1840         183 VHH  185 (423)
Q Consensus       183 I~~  185 (423)
                      |++
T Consensus       262 ll~  264 (267)
T cd06645         262 LLQ  264 (267)
T ss_pred             Hhc
Confidence            875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.90  E-value=1.3e-23  Score=198.28  Aligned_cols=151  Identities=19%  Similarity=0.353  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.|++ ||||+|+||+++.++.+||+|||++........  ......++..|+|||.+.+... 
T Consensus       103 ~~~~~~~l~~~l~~lh~~~i~-h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~-  178 (256)
T cd08221         103 VLWYLFQIVSAVSYIHKAGIL-HRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS--MAETVVGTPYYMSPELCQGVKY-  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccCCChHhEEEeCCCCEEECcCcceEEcccccc--cccccCCCccccCHhhcCCCCC-
Confidence            678999999999999999988 999999999999999999999999875533221  1234567889999999877554 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||+++|||++|..||..  ....+....+..+... +  ....++.++.+++.+||..+|++||++.+++
T Consensus       179 --~~~~Dv~slG~i~~~l~~g~~~~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll  251 (256)
T cd08221         179 --NFKSDIWALGCVLYELLTLKRTFDA--TNPLNLVVKIVQGNYT-P--VVSVYSSELISLVHSLLQQDPEKRPTADEVL  251 (256)
T ss_pred             --CCcchhHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCCCC-C--CccccCHHHHHHHHHHcccCcccCCCHHHHh
Confidence              7899999999999999999999964  3345555555544322 1  1245788999999999999999999999987


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       252 ~~  253 (256)
T cd08221         252 DQ  253 (256)
T ss_pred             hC
Confidence            64

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.90  E-value=1.6e-23  Score=200.55  Aligned_cols=155  Identities=19%  Similarity=0.308  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||++ +++ ||||||+||+++.++.+||+|||++.......   ......++..|+|||.+.+...
T Consensus       105 ~~~~~~qi~~~l~~lH~~~~i~-h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~  180 (283)
T cd06617         105 LGKIAVSIVKALEYLHSKLSVI-HRDVKPSNVLINRNGQVKLCDFGISGYLVDSV---AKTIDAGCKPYMAPERINPELN  180 (283)
T ss_pred             HHHHHHHHHHHHHHHhhcCCee-cCCCCHHHEEECCCCCEEEeeccccccccccc---ccccccCCccccChhhcCCccc
Confidence            569999999999999997 887 99999999999999999999999987543221   1122456778999998865321


Q ss_pred             -CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 -PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 -~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                       ...+.++|+||||+++|+|++|+.||.......+.+...+ .+  ..+..+...++.++.+++.+||..+|++||++.+
T Consensus       181 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~  257 (283)
T cd06617         181 QKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVV-EE--PSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPE  257 (283)
T ss_pred             ccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHH-hc--CCCCCCccccCHHHHHHHHHHccCChhhCcCHHH
Confidence             2347899999999999999999999964333333333322 22  2233333457899999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      |++.
T Consensus       258 il~~  261 (283)
T cd06617         258 LLQH  261 (283)
T ss_pred             HhcC
Confidence            9874

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.90  E-value=1.4e-23  Score=199.27  Aligned_cols=152  Identities=22%  Similarity=0.399  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc----cccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET----GQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~----~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.|++.||.|||+.|++ ||||+|+||++++++.+||+|||.++........    .......++..|+|||.+.+
T Consensus       108 ~~~~~~~l~~~l~~lH~~~iv-H~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~  186 (267)
T cd06628         108 VRNFVRQILKGLNYLHNRGII-HRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQ  186 (267)
T ss_pred             HHHHHHHHHHHHHHHHhcCcc-cccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhcc
Confidence            468999999999999999998 9999999999999999999999998765422111    11123457788999999877


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+   +.++|+||||+++|+|++|..||...  .....+..+..  ...+.. +..++..+.+++++||+.+|.+||++
T Consensus       187 ~~~---~~~~Dv~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~--~~~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~  258 (267)
T cd06628         187 TSY---TRKADIWSLGCLVVEMLTGKHPFPDC--TQLQAIFKIGE--NASPEI-PSNISSEAIDFLEKTFEIDHNKRPTA  258 (267)
T ss_pred             CCC---CchhhhHHHHHHHHHHhhCCCCCCCc--cHHHHHHHHhc--cCCCcC-CcccCHHHHHHHHHHccCCchhCcCH
Confidence            654   78999999999999999999999743  22222333322  122322 23578999999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .+|++
T Consensus       259 ~~il~  263 (267)
T cd06628         259 AELLK  263 (267)
T ss_pred             HHHhh
Confidence            99875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=9.3e-24  Score=199.58  Aligned_cols=156  Identities=19%  Similarity=0.294  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||+++.++.+||+|||++........  ......++..|+|||.+.+....
T Consensus       103 ~~~~~~ql~~~l~~lh~~~i~-h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~Pe~~~~~~~~  179 (262)
T cd06613         103 IAYVCRETLKGLAYLHETGKI-HRDIKGANILLTEDGDVKLADFGVSAQLTATIA--KRKSFIGTPYWMAPEVAAVERKG  179 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCCce-ecCCChhhEEECCCCCEEECccccchhhhhhhh--ccccccCCccccCchhhcccccC
Confidence            578999999999999999998 999999999999999999999999865432211  11234577789999998765212


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC-CCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT-SSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~-~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      ..+.++|+||||+++|||++|..||....  ..+....+.......+.. .....+.++.+++.+||..+|.+|||+.+|
T Consensus       180 ~~~~~~Di~slG~~l~~~~tg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i  257 (262)
T cd06613         180 GYDGKCDIWALGITAIELAELQPPMFDLH--PMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKL  257 (262)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHH
Confidence            33789999999999999999999997533  223333333221111111 123457889999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      +.
T Consensus       258 l~  259 (262)
T cd06613         258 LQ  259 (262)
T ss_pred             hc
Confidence            74

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.90  E-value=1.1e-23  Score=202.09  Aligned_cols=153  Identities=17%  Similarity=0.323  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ |+||||+||+++.++.+||+|||++......    ......++..|+|||.+.+..+ 
T Consensus        97 ~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~-  170 (279)
T cd06619          97 LGRIAVAVVKGLTYLWSLKIL-HRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS----IAKTYVGTNAYMAPERISGEQY-  170 (279)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-eCCCCHHHEEECCCCCEEEeeCCcceecccc----cccCCCCChhhcCceeecCCCC-
Confidence            468999999999999999998 9999999999999999999999998754322    1233567889999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCC-----ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-----TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~-----~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                        +.++|+||||+++|+|++|+.||.....     ...+....+....  .+.......++++.+++.+||+.+|++||+
T Consensus       171 --~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~  246 (279)
T cd06619         171 --GIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDED--PPVLPVGQFSEKFVHFITQCMRKQPKERPA  246 (279)
T ss_pred             --CCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccC--CCCCCCCcCCHHHHHHHHHHhhCChhhCCC
Confidence              8899999999999999999999964221     1122222222221  222223346789999999999999999999


Q ss_pred             HHHHHHHH
Q psy1840         180 LRFVHHKL  187 (423)
Q Consensus       180 ~~~I~~~L  187 (423)
                      +.++++..
T Consensus       247 ~~eil~~~  254 (279)
T cd06619         247 PENLMDHP  254 (279)
T ss_pred             HHHHhcCc
Confidence            99998753

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.90  E-value=2.1e-23  Score=201.20  Aligned_cols=156  Identities=19%  Similarity=0.271  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||++.......  .......++..|+|||.+.+..  
T Consensus       112 ~~~~~~ql~~~l~~lH~~~i~-H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~  188 (292)
T cd06644         112 IQVICRQMLEALQYLHSMKII-HRDLKAGNVLLTLDGDIKLADFGVSAKNVKTL--QRRDSFIGTPYWMAPEVVMCETMK  188 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCCee-ecCCCcceEEEcCCCCEEEccCccceeccccc--cccceecCCccccCceeecccccc
Confidence            678999999999999999998 99999999999999999999999876432211  1113345778899999986422  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ....+.++|||||||++|||++|..||....  ..+....+........ .....++.++.+++.+||+.+|++||++.+
T Consensus       189 ~~~~~~~~Dv~slG~il~el~~g~~p~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  265 (292)
T cd06644         189 DTPYDYKADIWSLGITLIEMAQIEPPHHELN--PMRVLLKIAKSEPPTL-SQPSKWSMEFRDFLKTALDKHPETRPSAAQ  265 (292)
T ss_pred             CCCCCchhhhHhHHHHHHHHhcCCCCCcccc--HHHHHHHHhcCCCccC-CCCcccCHHHHHHHHHHhcCCcccCcCHHH
Confidence            1134789999999999999999999996432  3333333333221111 123357789999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       266 il~~  269 (292)
T cd06644         266 LLEH  269 (292)
T ss_pred             HhcC
Confidence            8763

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.90  E-value=6.8e-24  Score=203.36  Aligned_cols=155  Identities=18%  Similarity=0.182  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++.......  .......+++.|+|||.+.+..  
T Consensus       103 ~~~~~~qi~~~L~~lH~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~--  177 (285)
T cd07861         103 VKSYLYQILQGILFCHSRRVL-HRDLKPQNLLIDNKGVIKLADFGLARAFGIPV--RVYTHEVVTLWYRAPEVLLGSP--  177 (285)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ecCCCHHHEEEcCCCcEEECcccceeecCCCc--ccccCCcccccccChHHhcCCC--
Confidence            467999999999999999998 99999999999999999999999986543221  1112335677899999886543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC------------------------CCCCCCCCCCCchH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG------------------------SGLRPDTSSLDCAP  160 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~------------------------~~~~p~~~~~~~~~  160 (423)
                      ..+.++|||||||++|+|++|+.||..... ...........                        ...........+++
T Consensus       178 ~~~~~~Dv~slG~il~~l~tg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (285)
T cd07861         178 RYSTPVDIWSIGTIFAEMATKKPLFHGDSE-IDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDE  256 (285)
T ss_pred             CcCcHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCH
Confidence            237899999999999999999999964321 11111111100                        00000001234688


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++.+++++||+.||++|||+.+|+.
T Consensus       257 ~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         257 DGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HHHHHHHHHhcCChhhCCCHHHHhc
Confidence            9999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.90  E-value=1.3e-23  Score=199.80  Aligned_cols=153  Identities=22%  Similarity=0.374  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+ .+++ ||||+|+||+++.++.+||+|||++.......   ......++..|+|||.+.+..+
T Consensus       115 ~~~~~~~l~~~l~~lh~~~~i~-H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~  190 (269)
T cd08528         115 IWNIFVQMVLALRYLHKEKRIV-HRDLTPNNIMLGEDDKVTITDFGLAKQKQPES---KLTSVVGTILYSCPEIVKNEPY  190 (269)
T ss_pred             HHHHHHHHHHHHHHhccCCcee-ecCCCHHHEEECCCCcEEEecccceeeccccc---ccccccCcccCcChhhhcCCCC
Confidence            57899999999999996 5676 99999999999999999999999987643322   2234567888999999987554


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++||+++|..||...  ........+..+... | .....+++.+.+++.+||+.||++||++.++
T Consensus       191 ---~~~~Dv~slG~ll~~l~~g~~p~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~  263 (269)
T cd08528         191 ---GEKADVWAFGCILYQMCTLQPPFYST--NMLSLATKIVEAVYE-P-LPEGMYSEDVTDVITSCLTPDAEARPDIIQV  263 (269)
T ss_pred             ---chHHHHHHHHHHHHHHHhCCCccccc--CHHHHHHHHhhccCC-c-CCcccCCHHHHHHHHHHCCCCCccCCCHHHH
Confidence               88999999999999999999999632  233444444443221 2 2223578899999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      ...++
T Consensus       264 ~~~~~  268 (269)
T cd08528         264 SAMIS  268 (269)
T ss_pred             HHHhc
Confidence            88764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.90  E-value=2e-23  Score=196.44  Aligned_cols=153  Identities=32%  Similarity=0.567  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ ||||||+||++++++.++|+|||++........... ....++..|+|||.+.+... 
T Consensus       105 ~~~~~~ql~~~l~~lh~~~~~-h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~~Pe~~~~~~~-  181 (258)
T smart00219      105 LLSFALQIARGMEYLESKNFI-HRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKK-KGGKLPIRWMAPESLKDGKF-  181 (258)
T ss_pred             HHHHHHHHHHHHHHHhcCCee-ecccccceEEEccCCeEEEcccCCceeccccccccc-ccCCCcccccChHHhccCCC-
Confidence            578999999999999999998 999999999999999999999999876543321111 12235678999999866544 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||+|+++++|++ |..||..  .....+...+..+...  .. ...++.++.+++.+||..+|++|||+.++
T Consensus       182 --~~~~Di~slG~i~~~l~~~g~~p~~~--~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l  254 (258)
T smart00219      182 --TSKSDVWSFGVLLWEIFTLGESPYPG--MSNEEVLEYLKKGYRL--PK-PENCPPEIYKLMLQCWAEDPEDRPTFSEL  254 (258)
T ss_pred             --CcchhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHhcCCCC--CC-CCcCCHHHHHHHHHHCcCChhhCcCHHHH
Confidence              899999999999999998 7788864  4556666666654322  11 23478999999999999999999999998


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++.|
T Consensus       255 l~~l  258 (258)
T smart00219      255 VEIL  258 (258)
T ss_pred             HhhC
Confidence            8753

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.90  E-value=6.4e-24  Score=206.75  Aligned_cols=155  Identities=16%  Similarity=0.191  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       106 ~~~~~~qi~~aL~~lH~~~iv-H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~--  180 (309)
T cd07872         106 VKIFLYQILRGLAYCHRRKVL-HRDLKPQNLLINERGELKLADFGLARAKSVPTK--TYSNEVVTLWYRPPDVLLGSS--  180 (309)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEECCCCCEEECccccceecCCCcc--ccccccccccccCCHHHhCCC--
Confidence            567899999999999999998 999999999999999999999999865432211  112345678899999886543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC---C----------------CCCCCC-------CCCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG---S----------------GLRPDT-------SSLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~---~----------------~~~p~~-------~~~~~  158 (423)
                      ..+.++|||||||++|||++|+.||.....  .+....+...   .                ...+..       ....+
T Consensus       181 ~~~~~~DiwslG~il~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (309)
T cd07872         181 EYSTQIDMWGVGCIFFEMASGRPLFPGSTV--EDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRL  258 (309)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCC
Confidence            237899999999999999999999975322  2222211110   0                000000       01246


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++++.+++.+||+.||.+|||+.++++.
T Consensus       259 ~~~~~~li~~~L~~dp~~R~t~~e~l~h  286 (309)
T cd07872         259 DTEGIELLTKFLQYESKKRISAEEAMKH  286 (309)
T ss_pred             CHHHHHHHHHhccCChhhCCCHHHHhcC
Confidence            7889999999999999999999999763

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.90  E-value=1.3e-23  Score=203.71  Aligned_cols=155  Identities=15%  Similarity=0.276  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++.......  .......++..|+|||.+.+..+ 
T Consensus       119 ~~~~~~qi~~~L~~LH~~~iv-H~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~-  194 (297)
T cd06659         119 IATVCESVLQALCYLHSQGVI-HRDIKSDSILLTLDGRVKLSDFGFCAQISKDV--PKRKSLVGTPYWMAPEVISRTPY-  194 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHeEEccCCcEEEeechhHhhccccc--ccccceecCccccCHHHHccCCC-
Confidence            578999999999999999988 99999999999999999999999976543221  11234567889999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|..||..  ....+....+......... .....+..+.+++.+||+.+|++||++.+++
T Consensus       195 --~~~~Dv~slG~il~el~~g~~p~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll  269 (297)
T cd06659         195 --GTEVDIWSLGIMVIEMVDGEPPYFS--DSPVQAMKRLRDSPPPKLK-NAHKISPVLRDFLERMLTREPQERATAQELL  269 (297)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHhccCCCCcc-ccCCCCHHHHHHHHHHhcCCcccCcCHHHHh
Confidence              8899999999999999999999964  2334444444433222111 2235678999999999999999999999998


Q ss_pred             HHHH
Q psy1840         185 HKLK  188 (423)
Q Consensus       185 ~~L~  188 (423)
                      +.--
T Consensus       270 ~~~~  273 (297)
T cd06659         270 DHPF  273 (297)
T ss_pred             hChh
Confidence            8543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG0579|consensus

Probab=99.90  E-value=7.7e-24  Score=211.76  Aligned_cols=155  Identities=19%  Similarity=0.283  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--CC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--LP  104 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--~~  104 (423)
                      -+++|++.+|.|||+++|| |||||..|||++-+|.++|+|||++....  .......++.||++|||||+.....  -.
T Consensus       134 vvc~q~ldALn~LHs~~iI-HRDLKAGNiL~TldGdirLADFGVSAKn~--~t~qkRDsFIGTPYWMAPEVvmCET~KD~  210 (1187)
T KOG0579|consen  134 VVCYQVLDALNWLHSQNII-HRDLKAGNILLTLDGDIRLADFGVSAKNK--STRQKRDSFIGTPYWMAPEVVMCETFKDQ  210 (1187)
T ss_pred             HHHHHHHHHHHHHhhcchh-hhhccccceEEEecCcEeeecccccccch--hHHhhhccccCCcccccchheeeccccCC
Confidence            5689999999999999998 99999999999999999999999975432  1222346789999999999887543  22


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      +|..++|||||||.|.||..+.+|...  .++-.++-++....+.-. ..+..++..+.+++++||..||+.||+..+++
T Consensus       211 PYDykaDiWSlGITLIEMAqiEPPHhe--lnpMRVllKiaKSePPTL-lqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll  287 (1187)
T KOG0579|consen  211 PYDYKADIWSLGITLIEMAQIEPPHHE--LNPMRVLLKIAKSEPPTL-LQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLL  287 (1187)
T ss_pred             CchhhhhHHhhhhHHHHHhccCCCccc--cchHHHHHHHhhcCCCcc-cCcchhhhHHHHHHHHHHhcCCccCCCHHHHh
Confidence            468999999999999999999999763  455566666655432211 22457889999999999999999999999998


Q ss_pred             HHH
Q psy1840         185 HKL  187 (423)
Q Consensus       185 ~~L  187 (423)
                      +.-
T Consensus       288 ~Hp  290 (1187)
T KOG0579|consen  288 KHP  290 (1187)
T ss_pred             hCc
Confidence            764

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=9.9e-24  Score=199.69  Aligned_cols=149  Identities=22%  Similarity=0.306  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||+++.++.+||+|||++.....      .....++..|+|||.+.+..+ 
T Consensus        99 ~~~i~~qi~~aL~~lH~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~------~~~~~~~~~y~~pe~~~~~~~-  170 (260)
T cd05611          99 AKQYIAEVVLGVEDLHQRGII-HRDIKPENLLIDQTGHLKLTDFGLSRNGLE------NKKFVGTPDYLAPETILGVGD-  170 (260)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHeEECCCCcEEEeecccceeccc------cccCCCCcCccChhhhcCCCC-
Confidence            578999999999999999998 999999999999999999999999765322      123456778999999877653 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||+++|++++|..||..  .+..+....+..+....+......++..+.+++.+||+.+|++||++.++.
T Consensus       171 --~~~~Dv~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~  246 (260)
T cd05611         171 --DKMSDWWSLGCVIFEFLFGYPPFHA--ETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQ  246 (260)
T ss_pred             --cchhhhHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHH
Confidence              8899999999999999999999964  334555555554433333333335789999999999999999999765443


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       247 ~  247 (260)
T cd05611         247 E  247 (260)
T ss_pred             H
Confidence            3

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG1035|consensus

Probab=99.90  E-value=8.7e-24  Score=224.97  Aligned_cols=158  Identities=29%  Similarity=0.407  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCccccc----C------------CCcccccccc
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKA----G------------QDETGQERKL   86 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~----~------------~~~~~~~~~~   86 (423)
                      ....++..+|+.||.|+|+.|+| ||||||.||++|++..|||+|||++....    .            .......+..
T Consensus       697 d~~wrLFreIlEGLaYIH~~giI-HRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~  775 (1351)
T KOG1035|consen  697 DEAWRLFREILEGLAYIHDQGII-HRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQ  775 (1351)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcee-eccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccc
Confidence            33578999999999999999987 99999999999999999999999987621    0            0111234567


Q ss_pred             cCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHH
Q psy1840          87 RRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACM  166 (423)
Q Consensus        87 ~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li  166 (423)
                      .||..|+|||++.+.....++.|+|+||+|||++||+.   ||. ..|....++..++.+....|.....+--+.-..+|
T Consensus       776 VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~-TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI  851 (1351)
T KOG1035|consen  776 VGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFG-TSMERASILTNLRKGSIPEPADFFDPEHPEEASLI  851 (1351)
T ss_pred             cceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCC-chHHHHHHHHhcccCCCCCCcccccccchHHHHHH
Confidence            89999999999987653457999999999999999985   565 35667778888887655444222333345667899


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q psy1840         167 RTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       167 ~~C~~~dP~~RPt~~~I~~  185 (423)
                      +.+++.||.+|||+.+++.
T Consensus       852 ~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  852 RWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             HHHhcCCCccCCCHHHHhh
Confidence            9999999999999999875

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=2.7e-23  Score=198.60  Aligned_cols=153  Identities=16%  Similarity=0.336  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.|++ ||||+|+||+++.++.++|+|||++........  ......++..|+|||.+.++.  
T Consensus       103 ~~~i~~~i~~~l~~lh~~~i~-H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~--  177 (277)
T cd06917         103 ISVIIREVLVALKYIHKVGVI-HRDIKAANILVTNTGNVKLCDFGVAALLNQNSS--KRSTFVGTPYWMAPEVITEGK--  177 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCcCHHHEEEcCCCCEEEccCCceeecCCCcc--ccccccCCcceeCHHHhccCC--
Confidence            678999999999999999998 999999999999999999999999876543321  123345788899999986543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      ..+.++|+||||+++|+|++|..||...  ........+...  ..+......++.++.+++.+||+.||++||++.+++
T Consensus       178 ~~~~~~Dv~slG~~l~~ll~g~~p~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il  253 (277)
T cd06917         178 YYDTKADIWSLGITIYEMATGNPPYSDV--DAFRAMMLIPKS--KPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELL  253 (277)
T ss_pred             ccccchhHHHHHHHHHHHHhCCCCCCCC--ChhhhhhccccC--CCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHh
Confidence            2378999999999999999999999743  222222222221  222333334788999999999999999999999997


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      ..
T Consensus       254 ~~  255 (277)
T cd06917         254 KS  255 (277)
T ss_pred             hC
Confidence            74

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.90  E-value=1e-23  Score=201.75  Aligned_cols=159  Identities=23%  Similarity=0.411  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||+|||++|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+...
T Consensus       111 ~~~~~~~l~~aL~~lH~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~  189 (284)
T cd05038         111 LLLFSSQICKGMDYLGSQRYI-HRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKF  189 (284)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCC
Confidence            578999999999999999987 9999999999999999999999998765422211 11112234456999999876644


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC-------------hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhh
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-------------DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCW  170 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-------------~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~  170 (423)
                         +.++||||||+++|||++|..|+......             ...+...+.....  .. ....++.++.+++.+||
T Consensus       190 ---~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~li~~cl  263 (284)
T cd05038         190 ---SSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGER--LP-RPPSCPDEVYDLMKLCW  263 (284)
T ss_pred             ---CcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCc--CC-CCccCCHHHHHHHHHHh
Confidence               88999999999999999999988542111             1222233332221  11 12357789999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHH
Q psy1840         171 EEDPELRPDLRFVHHKLKEM  190 (423)
Q Consensus       171 ~~dP~~RPt~~~I~~~L~~i  190 (423)
                      +.+|++||++.+|++.|+.+
T Consensus       264 ~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         264 EAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             ccChhhCCCHHHHHHHHhhc
Confidence            99999999999999998765

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.90  E-value=2e-23  Score=196.93  Aligned_cols=153  Identities=26%  Similarity=0.550  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|++|||+.+++ ||||||+||+++.++.+||+|||++........ .......++..|+|||.+.+..+ 
T Consensus       102 ~~~~~~~l~~~l~~lH~~~i~-h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~~~aPe~~~~~~~-  178 (256)
T cd05112         102 LLGMCLDVCEGMAYLESSNVI-HRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY-TSSTGTKFPVKWSSPEVFSFSKY-  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccccccceEEEcCCCeEEECCCcceeecccCcc-cccCCCccchhhcCHhHhccCCc-
Confidence            578999999999999999988 999999999999999999999999875432211 11122234567999999887654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++||+++ |..||..  ....++...+..+....   .+...+..+.+++.+||+.+|++||++.++
T Consensus       179 --~~~~Dv~slG~~l~el~~~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~  251 (256)
T cd05112         179 --SSKSDVWSFGVLMWEVFSEGKTPYEN--RSNSEVVETINAGFRLY---KPRLASQSVYELMQHCWKERPEDRPSFSLL  251 (256)
T ss_pred             --ChHHHHHHHHHHHHHHHcCCCCCCCc--CCHHHHHHHHhCCCCCC---CCCCCCHHHHHHHHHHcccChhhCCCHHHH
Confidence              789999999999999998 8899863  33455666665442211   122367899999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++.|
T Consensus       252 l~~l  255 (256)
T cd05112         252 LHQL  255 (256)
T ss_pred             HHhh
Confidence            8876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.90  E-value=1.4e-23  Score=198.83  Aligned_cols=156  Identities=22%  Similarity=0.332  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc--ccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG--QERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~--~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.|++.|+.|||+.|++ ||||+|+||+++.++.+||+|||++..........  ......++..|+|||.+....
T Consensus       104 ~~~~~~ql~~al~~lh~~~i~-h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~  182 (267)
T cd06610         104 IATVLKEVLKGLEYLHSNGQI-HRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVH  182 (267)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHcccc
Confidence            568899999999999999988 99999999999999999999999987654332221  223445788899999987652


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC-CCCC-CCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT-SSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~-~p~~-~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        ..+.++|+||||+++|+|++|+.||...  +..+........... .+.. ....+++.+.+++.+||..||++||++
T Consensus       183 --~~~~~~Dv~slG~i~~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  258 (267)
T cd06610         183 --GYDFKADIWSFGITAIELATGAAPYSKY--PPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTA  258 (267)
T ss_pred             --CcCcccchHhHhHHHHHHHhCCCCcccc--ChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCH
Confidence              2388999999999999999999999643  222333333332211 1111 113578899999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .+|+.
T Consensus       259 ~~ll~  263 (267)
T cd06610         259 EELLK  263 (267)
T ss_pred             HHHhh
Confidence            99875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0603|consensus

Probab=99.90  E-value=8.1e-24  Score=213.40  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE-cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLI-DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl-d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .+..|+.+|+.++.|||.+|++ ||||||+|||+ ++.++++|+|||.++.....     ....+-|..|.|||++....
T Consensus       416 e~~~w~~~lv~Av~~LH~~gvv-hRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~-----~~tp~~t~~y~APEvl~~~~  489 (612)
T KOG0603|consen  416 EASQWAAELVSAVDYLHEQGVV-HRDLKPGNILLDGSAGHLRLTYFGFWSELERS-----CDTPALTLQYVAPEVLAIQE  489 (612)
T ss_pred             HHHHHHHHHHHHHHHHHhcCee-ecCCChhheeecCCCCcEEEEEechhhhCchh-----hcccchhhcccChhhhccCC
Confidence            3567999999999999999998 99999999999 69999999999998765433     23445677899999998665


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.++|+||||++||+|++|+.||..- ....++..++..++..      ..++...++|+..||+.||.+||++.+
T Consensus       490 y---t~acD~WSLGvlLy~ML~G~tp~~~~-P~~~ei~~~i~~~~~s------~~vS~~AKdLl~~LL~~dP~~Rl~~~~  559 (612)
T KOG0603|consen  490 Y---TEACDWWSLGVLLYEMLTGRTLFAAH-PAGIEIHTRIQMPKFS------ECVSDEAKDLLQQLLQVDPALRLGADE  559 (612)
T ss_pred             C---CcchhhHHHHHHHHHHHhCCCccccC-CchHHHHHhhcCCccc------cccCHHHHHHHHHhccCChhhCcChhh
Confidence            5   99999999999999999999999632 2234666666553321      468899999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +...
T Consensus       560 i~~h  563 (612)
T KOG0603|consen  560 IGAH  563 (612)
T ss_pred             hccC
Confidence            8654

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.90  E-value=2.4e-24  Score=203.19  Aligned_cols=156  Identities=21%  Similarity=0.355  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcccc-CCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR-QPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~-~~~  102 (423)
                      ....++.|++.||.|||+++++ |+||||+||+++.++.++|+|||.+....  ..........++..|+|||.+. +..
T Consensus        99 ~~~~~~~qi~~~L~~Lh~~~i~-H~dikp~NIl~~~~~~~~l~Dfg~~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~  175 (260)
T PF00069_consen   99 EILKIAYQILEALAYLHSKGIV-HRDIKPENILLDENGEVKLIDFGSSVKLS--ENNENFNPFVGTPEYMAPEVLQQGKK  175 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-ESSBSGGGEEESTTSEEEESSGTTTEEST--STTSEBSSSSSSGGGSCHHHHTTTSS
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence            3689999999999999999998 99999999999999999999999986531  1122234556788899999988 444


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCC-CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR-MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~-~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .   +.++||||+|+++|+|++|..||.... .........................+..+.+++.+||+.||++||++.
T Consensus       176 ~---~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~  252 (260)
T PF00069_consen  176 Y---TRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAE  252 (260)
T ss_dssp             B---STHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHH
T ss_pred             c---cccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHH
Confidence            4   899999999999999999999997531 112222222222111111111112358999999999999999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      ++++
T Consensus       253 ~l~~  256 (260)
T PF00069_consen  253 ELLK  256 (260)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.90  E-value=1e-23  Score=202.10  Aligned_cols=154  Identities=17%  Similarity=0.283  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.||+.|+.|||+.+++ ||||+|+||+++.++.++|+|||++........  ......++..|+|||.+....  
T Consensus       123 ~~~~~~qi~~al~~LH~~~iv-H~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~l~~~~~~  199 (282)
T cd06636         123 IAYICREILRGLAHLHAHKVI-HRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENP  199 (282)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCCEEEeeCcchhhhhcccc--CCCcccccccccCHhhcCcccCc
Confidence            467889999999999999998 999999999999999999999999765432111  123356788899999886321  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ...++.++|||||||++|||++|..||....  ..+.+..+...  ..+......++.++.++|.+||+.||.+||++.+
T Consensus       200 ~~~~~~~~DvwslG~~l~el~~g~~p~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~e  275 (282)
T cd06636         200 DATYDYRSDIWSLGITAIEMAEGAPPLCDMH--PMRALFLIPRN--PPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQ  275 (282)
T ss_pred             CcCCCcccchhHHHHHHHHHHhCCCCccccC--HHhhhhhHhhC--CCCCCcccccCHHHHHHHHHHhCCChhhCcCHHH
Confidence            1234789999999999999999999996432  22222222221  1222233467899999999999999999999999


Q ss_pred             HHH
Q psy1840         183 VHH  185 (423)
Q Consensus       183 I~~  185 (423)
                      |++
T Consensus       276 ll~  278 (282)
T cd06636         276 LLK  278 (282)
T ss_pred             Hhc
Confidence            864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.90  E-value=1.1e-23  Score=205.46  Aligned_cols=158  Identities=17%  Similarity=0.224  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE----cCCccEEEeccCCcccccCCCcc-cccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI----DSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl----d~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~   99 (423)
                      ..+++.||+.||.|||+.+++ ||||||+||++    +.++.+||+|||+++........ .......++..|+|||.+.
T Consensus       110 ~~~i~~qi~~aL~~lH~~~iv-H~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  188 (317)
T cd07867         110 VKSLLYQILDGIHYLHANWVL-HRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLL  188 (317)
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-cCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhc
Confidence            468999999999999999988 99999999999    56789999999998765432211 1223456788899999987


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC--------hHHHHHHHh--------------cCCC--------C
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--------DEEIITSVT--------------QGSG--------L  149 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--------~~~i~~~i~--------------~~~~--------~  149 (423)
                      +..  .++.++|||||||++|||++|..||......        ...+.....              ....        .
T Consensus       189 ~~~--~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (317)
T cd07867         189 GAR--HYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFR  266 (317)
T ss_pred             CCC--ccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhc
Confidence            643  2388999999999999999999999642211        011110000              0000        0


Q ss_pred             CC-----------CCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         150 RP-----------DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       150 ~p-----------~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..           .......+..+.+|+.+|++.||.+|||+.++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~  313 (317)
T cd07867         267 RTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQ  313 (317)
T ss_pred             ccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhc
Confidence            00           0001123456888999999999999999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.90  E-value=1.1e-23  Score=211.38  Aligned_cols=156  Identities=21%  Similarity=0.244  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-------------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-------------------------   79 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-------------------------   79 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++++||+|||++........                         
T Consensus       103 ~~~~~~qi~~aL~~LH~~giv-HrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (381)
T cd05626         103 ARFYIAELTLAIESVHKMGFI-HRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVS  181 (381)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCccccccccc
Confidence            456788999999999999998 999999999999999999999999753210000                         


Q ss_pred             --------------------ccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHH
Q psy1840          80 --------------------TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI  139 (423)
Q Consensus        80 --------------------~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i  139 (423)
                                          ........||+.|+|||.+.+..+   +.++|||||||++|||++|..||...  +..+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~---~~~~DiwSlG~il~elltG~~Pf~~~--~~~~~  256 (381)
T cd05626         182 NCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGY---TQLCDWWSVGVILFEMLVGQPPFLAP--TPTET  256 (381)
T ss_pred             ccccccccchhhccccccccccccccccCCccccCHHHHcCCCC---CCccceeehhhHHHHHHhCCCCCcCC--CHHHH
Confidence                                000123468999999999987654   88999999999999999999999743  23333


Q ss_pred             HHHHhcCCCCCCCCCCCCchHHHHHHHHH--hhhcCCCCCCCHHHHHHH
Q psy1840         140 ITSVTQGSGLRPDTSSLDCAPSIIACMRT--CWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       140 ~~~i~~~~~~~p~~~~~~~~~~l~~Li~~--C~~~dP~~RPt~~~I~~~  186 (423)
                      ...+..............+++++.+++.+  |+..+|..||++.+++..
T Consensus       257 ~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         257 QLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             HHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            33333221111111123578899999988  556677779999998764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.90  E-value=2.1e-23  Score=200.85  Aligned_cols=152  Identities=16%  Similarity=0.291  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||+|+||+++.++.++|+|||++........  ......++..|+|||.+.+..+ 
T Consensus       117 ~~~~~~ql~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~-  192 (285)
T cd06648         117 IATVCLAVLKALSFLHAQGVI-HRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEVISRLPY-  192 (285)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCChhhEEEcCCCcEEEcccccchhhccCCc--ccccccCCccccCHHHhcCCCC-
Confidence            578999999999999999998 999999999999999999999998765432211  1233457888999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||+++||+++|+.||..  ....+....+......... ....++..+.+++.+||+.+|++||++.+++
T Consensus       193 --~~~~Dv~slGv~l~ell~g~~p~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il  267 (285)
T cd06648         193 --GTEVDIWSLGIMVIEMVDGEPPYFN--EPPLQAMKRIRDNLPPKLK-NLHKVSPRLRSFLDRMLVRDPAQRATAAELL  267 (285)
T ss_pred             --CCcccHHHHHHHHHHHHhCCCCCcC--CCHHHHHHHHHhcCCCCCc-ccccCCHHHHHHHHHHcccChhhCcCHHHHc
Confidence              8899999999999999999999864  2334445555544221111 1223778999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       268 ~  268 (285)
T cd06648         268 N  268 (285)
T ss_pred             c
Confidence            5

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.90  E-value=2.5e-23  Score=197.14  Aligned_cols=147  Identities=20%  Similarity=0.361  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc--------EEEeccCCcccccCCCcccccccccCCccccCCc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV--------LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPE   96 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~--------vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE   96 (423)
                      .+.++.||+.||+|||+.|++ ||||||+||+++.++.        +|++|||++......      ....++..|+|||
T Consensus       102 ~~~~~~qi~~~l~~lH~~~ii-H~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE  174 (258)
T cd05078         102 KLEVAKQLAWALHFLEDKGLT-HGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPK------EILLERIPWVPPE  174 (258)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCccceEEEecccccccCCCceEEecccccccccCCc------hhccccCCccCch
Confidence            678999999999999999998 9999999999987664        699999987543211      2345677899999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCC-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCC
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ-GPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~-~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                      .+.+..  ..+.++||||||+++||+++|. .||...  +.......... ....|    ...+.++.+++.+||+.+|+
T Consensus       175 ~~~~~~--~~~~~~DiwslG~~l~~l~~g~~~~~~~~--~~~~~~~~~~~-~~~~~----~~~~~~~~~li~~~l~~~p~  245 (258)
T cd05078         175 CIENPQ--NLSLAADKWSFGTTLWEIFSGGDKPLSAL--DSQKKLQFYED-RHQLP----APKWTELANLINQCMDYEPD  245 (258)
T ss_pred             hccCCC--CCCchhhHHHHHHHHHHHHcCCCCChhhc--cHHHHHHHHHc-cccCC----CCCcHHHHHHHHHHhccChh
Confidence            997643  2378999999999999999985 565432  22222222221 11111    23457899999999999999


Q ss_pred             CCCCHHHHHHHH
Q psy1840         176 LRPDLRFVHHKL  187 (423)
Q Consensus       176 ~RPt~~~I~~~L  187 (423)
                      +|||+.+|++.|
T Consensus       246 ~Rps~~~il~~l  257 (258)
T cd05078         246 FRPSFRAIIRDL  257 (258)
T ss_pred             hCCCHHHHHHhc
Confidence            999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.90  E-value=2.6e-23  Score=200.33  Aligned_cols=156  Identities=19%  Similarity=0.261  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC-
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL-  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-  103 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++.........  .....++..|+|||.+..... 
T Consensus       130 ~~~~~~qi~~al~~lH~~~iv-H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~  206 (291)
T cd06639         130 ISYILYGALLGLQHLHNNRII-HRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLR--RNTSVGTPFWMAPEVIACEQQY  206 (291)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccCCCHHHEEEcCCCCEEEeecccchhccccccc--ccCccCCccccChhhhcCCCCc
Confidence            568999999999999999998 9999999999999999999999998754322211  123457788999999865321 


Q ss_pred             -CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 -PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 -~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                       ...+.++|||||||++|||++|+.||...  ...+.+..+......... .....+..+.+++.+||+.+|++||++.+
T Consensus       207 ~~~~~~~~Di~slGvi~~el~~g~~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rps~~~  283 (291)
T cd06639         207 DYSYDARCDVWSLGITAIELGDGDPPLFDM--HPVKTLFKIPRNPPPTLL-HPEKWCRSFNHFISQCLIKDFEARPSVTH  283 (291)
T ss_pred             ccccCCccchHHHHHHHHHHhhCCCCCCCC--cHHHHHHHHhcCCCCCCC-cccccCHHHHHHHHHHhhcChhhCcCHHH
Confidence             12478999999999999999999999642  333333344333221111 12346678999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       284 il~~  287 (291)
T cd06639         284 LLEH  287 (291)
T ss_pred             HhcC
Confidence            8753

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.90  E-value=9.9e-24  Score=203.25  Aligned_cols=152  Identities=22%  Similarity=0.340  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||||+||+++.++.++|+|||++........   .....|+..|+|||.+.+..+ 
T Consensus       104 ~~~~~~qi~~~l~~lH~~~ii-H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---~~~~~g~~~y~aPE~~~~~~~-  178 (285)
T cd05630         104 AVFYAAEICCGLEDLHQERIV-YRDLKPENILLDDHGHIRISDLGLAVHVPEGQT---IKGRVGTVGYMAPEVVKNERY-  178 (285)
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-eCCCCHHHEEECCCCCEEEeeccceeecCCCcc---ccCCCCCccccChHHHcCCCC-
Confidence            578899999999999999998 999999999999999999999999865432211   123467889999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCC-hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD----  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt----  179 (423)
                        +.++||||||+++|+|++|..||...... ..+.........   +......+++++.+++.+||+.||++|||    
T Consensus       179 --~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~  253 (285)
T cd05630         179 --TFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV---QEEYSEKFSPDARSLCKMLLCKDPKERLGCQGG  253 (285)
T ss_pred             --CCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhh---hhhcCccCCHHHHHHHHHHhhcCHHHccCCCCC
Confidence              88999999999999999999999753221 112222221111   11122357889999999999999999999    


Q ss_pred             -HHHHHHH
Q psy1840         180 -LRFVHHK  186 (423)
Q Consensus       180 -~~~I~~~  186 (423)
                       +.++++.
T Consensus       254 ~~~~~~~h  261 (285)
T cd05630         254 GAREVKEH  261 (285)
T ss_pred             chHHHHcC
Confidence             7777653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.90  E-value=2.6e-23  Score=205.06  Aligned_cols=152  Identities=22%  Similarity=0.318  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+. +++ ||||||+||+++.++.+||+|||++.......    .....++..|+|||.+.+..+
T Consensus       105 ~~~~~~~l~~~l~~lH~~~~iv-H~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~  179 (333)
T cd06650         105 LGKVSIAVIKGLTYLREKHKIM-HRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHY  179 (333)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEE-ecCCChhhEEEcCCCCEEEeeCCcchhhhhhc----cccCCCCccccCHHHhcCCCC
Confidence            468999999999999986 566 99999999999999999999999986543221    123467889999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh---c-----------------------------------
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT---Q-----------------------------------  145 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~---~-----------------------------------  145 (423)
                         +.++|||||||++||+++|+.||.....  .++...+.   .                                   
T Consensus       180 ---~~~~DvwslG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (333)
T cd06650         180 ---SVQSDIWSMGLSLVEMAIGRYPIPPPDA--KELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFEL  254 (333)
T ss_pred             ---CcHHHHHHHHHHHHHHHHCCCCCCCcch--hHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHH
Confidence               8899999999999999999999964221  11111110   0                                   


Q ss_pred             ----CCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         146 ----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       146 ----~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                          .....|.......+.++.+++.+||+.||++|||+.+++..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h  299 (333)
T cd06650         255 LDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVH  299 (333)
T ss_pred             HHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhC
Confidence                00011111122356789999999999999999999999754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.90  E-value=2.4e-23  Score=202.27  Aligned_cols=157  Identities=19%  Similarity=0.225  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-------------ccccccccCCcc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-------------TGQERKLRRRKL   91 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-------------~~~~~~~~gt~~   91 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||+++.......             ........++..
T Consensus       103 ~~~~~~~i~~~l~~lH~~~i~-H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (305)
T cd05609         103 ARMYFAETVLALEYLHNYGIV-HRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPE  181 (305)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCcc
Confidence            467889999999999999998 999999999999999999999998764211100             000112346778


Q ss_pred             ccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhh
Q psy1840          92 YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWE  171 (423)
Q Consensus        92 y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~  171 (423)
                      |+|||.+.+...   +.++|+||||+++||+++|..||.+  ....++......+....|.... .++.++.+++.+||+
T Consensus       182 y~aPE~~~~~~~---~~~~Di~slG~vl~el~~g~~pf~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~l~  255 (305)
T cd05609         182 YIAPEVILRQGY---GKPVDWWAMGIILYEFLVGCVPFFG--DTPEELFGQVISDDIEWPEGDE-ALPADAQDLISRLLR  255 (305)
T ss_pred             ccCchhccCCCC---CchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcccCCCCccc-cCCHHHHHHHHHHhc
Confidence            999999876554   8999999999999999999999964  3456666666554433333322 578899999999999


Q ss_pred             cCCCCCCCHHHHHHHHH
Q psy1840         172 EDPELRPDLRFVHHKLK  188 (423)
Q Consensus       172 ~dP~~RPt~~~I~~~L~  188 (423)
                      .+|++||++.++.+.++
T Consensus       256 ~~P~~R~~~~~~~~ll~  272 (305)
T cd05609         256 QNPLERLGTGGAFEVKQ  272 (305)
T ss_pred             cChhhccCccCHHHHHh
Confidence            99999999765555443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.90  E-value=1.6e-23  Score=200.84  Aligned_cols=155  Identities=16%  Similarity=0.120  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       101 ~~~~~~qi~~al~~LH~~~i~-H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~--  175 (284)
T cd07839         101 VKSFMFQLLKGLAFCHSHNVL-HRDLKPQNLLINKNGELKLADFGLARAFGIPVR--CYSAEVVTLWYRPPDVLFGAK--  175 (284)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-cCCCCHHHEEEcCCCcEEECccchhhccCCCCC--CcCCCccccCCcChHHHhCCc--
Confidence            579999999999999999988 999999999999999999999999875432211  112345678899999987643  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC---------------C--CCCCCC--------CCCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG---------------S--GLRPDT--------SSLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~---------------~--~~~p~~--------~~~~~~  159 (423)
                      ..+.++|||||||++|||++|..|+.... +..+....+...               .  ...+..        ....++
T Consensus       176 ~~~~~~DiwslG~il~~l~tg~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (284)
T cd07839         176 LYSTSIDMWSAGCIFAELANAGRPLFPGN-DVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLN  254 (284)
T ss_pred             ccCcHHHHHHHHHHHHHHHhcCCCCcCCC-CHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCC
Confidence            23789999999999999999998864322 222222222110               0  000000        012467


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +++.+++++||+.||.+|||+.+++.
T Consensus       255 ~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         255 STGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             HHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            88999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.90  E-value=9.2e-24  Score=200.15  Aligned_cols=152  Identities=23%  Similarity=0.365  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.|++|||+ .+++ ||||||+||+++.++.+||+|||.+........    ....++..|+|||.+.+..+
T Consensus       102 ~~~~~~~l~~~l~~lH~~~~i~-H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~----~~~~~~~~y~~PE~~~~~~~  176 (265)
T cd06605         102 LGKIAVAVLKGLTYLHEKHKII-HRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLA----KTFVGTSSYMAPERIQGNDY  176 (265)
T ss_pred             HHHHHHHHHHHHHHHcCCCCee-cCCCCHHHEEECCCCCEEEeecccchhhHHHHh----hcccCChhccCHHHHcCCCC
Confidence            46899999999999999 8987 999999999999999999999999765432111    12567788999999877654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCC---CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLR---MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~---~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                         +.++||||||+++|++++|..||....   ....+....+...  ..+..+...++.++.++|.+||..+|++|||+
T Consensus       177 ---~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  251 (265)
T cd06605         177 ---SVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNE--PPPRLPSGKFSPDFQDFVNLCLIKDPRERPSY  251 (265)
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcC--CCCCCChhhcCHHHHHHHHHHcCCCchhCcCH
Confidence               899999999999999999999996432   1222333333332  22233332378899999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .+++..
T Consensus       252 ~~ll~~  257 (265)
T cd06605         252 KELLEH  257 (265)
T ss_pred             HHHhhC
Confidence            998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG0577|consensus

Probab=99.90  E-value=9.5e-24  Score=209.94  Aligned_cols=151  Identities=21%  Similarity=0.324  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...|+.+.+.||.|||+.+.| |||||..|||++..|.|||+|||.+......      .++.||+.|||||++..-.-.
T Consensus       128 IAAi~~gaL~gLaYLHS~~~I-HRDiKAGNILLse~g~VKLaDFGSAsi~~PA------nsFvGTPywMAPEVILAMDEG  200 (948)
T KOG0577|consen  128 IAAITHGALQGLAYLHSHNRI-HRDIKAGNILLSEPGLVKLADFGSASIMAPA------NSFVGTPYWMAPEVILAMDEG  200 (948)
T ss_pred             HHHHHHHHHHHHHHHHHhhHH-hhhccccceEecCCCeeeeccccchhhcCch------hcccCCccccchhHheecccc
Confidence            468899999999999999999 9999999999999999999999987765332      568999999999999754433


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      .++-++||||+||++.|+.-+++|+.  .|+.-..+..|.+..  .|......++..+.+++..|++.-|.+|||..+++
T Consensus       201 qYdgkvDvWSLGITCIELAERkPPlF--nMNAMSALYHIAQNe--sPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll  276 (948)
T KOG0577|consen  201 QYDGKVDVWSLGITCIELAERKPPLF--NMNAMSALYHIAQNE--SPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELL  276 (948)
T ss_pred             ccCCccceeeccchhhhhhhcCCCcc--CchHHHHHHHHHhcC--CCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHh
Confidence            45899999999999999999999975  455555566666543  34555567899999999999999999999999887


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      ..
T Consensus       277 ~H  278 (948)
T KOG0577|consen  277 KH  278 (948)
T ss_pred             hc
Confidence            64

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.90  E-value=2e-23  Score=216.93  Aligned_cols=157  Identities=17%  Similarity=0.202  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++........ ......|+..|+|||++.+..+ 
T Consensus       269 ~~~i~~ql~~aL~yLH~~gIi-HrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~-  345 (501)
T PHA03210        269 TRAIMKQLLCAVEYIHDKKLI-HRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREA-FDYGWVGTVATNSPEILAGDGY-  345 (501)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEECCCCCEEEEeCCCceecCccccc-ccccccCCcCCCCchhhcCCCC-
Confidence            457999999999999999998 9999999999999999999999998765432221 1234568999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCC-CCCCCCCCh-HHHHHHHhcCC---CCCC------------------------CCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTD-EEIITSVTQGS---GLRP------------------------DTSS  155 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~-Pf~~~~~~~-~~i~~~i~~~~---~~~p------------------------~~~~  155 (423)
                        +.++|||||||++|||++|.. |+....... .++...+....   ...|                        ....
T Consensus       346 --~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~  423 (501)
T PHA03210        346 --CEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRN  423 (501)
T ss_pred             --CcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHh
Confidence              899999999999999999875 444322222 22222221100   0000                        0011


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ...+..+.+++.+|++.||.+|||+.+++..
T Consensus       424 ~~~~~~~~~li~kmL~~DP~~Rpsa~elL~h  454 (501)
T PHA03210        424 LGLPADFEYPLVKMLTFDWHLRPGAAELLAL  454 (501)
T ss_pred             cCCChHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            2355678888999999999999999999864

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.90  E-value=1.4e-23  Score=210.02  Aligned_cols=158  Identities=17%  Similarity=0.189  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-C
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-L  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-~  103 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++........ .......||+.|+|||++.+.. .
T Consensus       144 ~~~~~~qi~~aL~~LH~~~iv-HrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~-~~~~~~~gt~~y~aPE~l~~~~~~  221 (371)
T cd05622         144 ARFYTAEVVLALDAIHSMGFI-HRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGM-VRCDTAVGTPDYISPEVLKSQGGD  221 (371)
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-eCCCCHHHEEECCCCCEEEEeCCceeEcCcCCc-ccccCcccCccccCHHHHhccCCC
Confidence            467889999999999999998 999999999999999999999999876532211 1223457899999999987543 1


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCC---CCCH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPEL---RPDL  180 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~---RPt~  180 (423)
                      ..++.++|||||||++|||++|..||..  .+.......+.......+......++..+.+++..|+. +|..   ||++
T Consensus       222 ~~~~~~~DiwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~-~~~~r~~r~~~  298 (371)
T cd05622         222 GYYGRECDWWSVGVFLYEMLVGDTPFYA--DSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLT-DREVRLGRNGV  298 (371)
T ss_pred             ccCCCccceeehhHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcC-ChhhhcCCCCH
Confidence            1247899999999999999999999974  33445555555433221111223578999999999998 4444   6788


Q ss_pred             HHHHHHH
Q psy1840         181 RFVHHKL  187 (423)
Q Consensus       181 ~~I~~~L  187 (423)
                      .+|++..
T Consensus       299 ~ei~~h~  305 (371)
T cd05622         299 EEIKRHL  305 (371)
T ss_pred             HHHhcCc
Confidence            8887643

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.90  E-value=3.1e-23  Score=197.90  Aligned_cols=155  Identities=25%  Similarity=0.470  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      +..++.|++.||.|||+.+++ ||||||+||+++.++.++++|||++........ .......++..|+|||.+.+... 
T Consensus       119 ~~~~~~~l~~~l~~LH~~~i~-H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~-  195 (275)
T cd05046         119 KVALCTQIALGMDHLSNARFV-HRDLAARNCLVSSQREVKVSLLSLSKDVYNSEY-YKLRNALIPLRWLAPEAVQEDDF-  195 (275)
T ss_pred             HHHHHHHHHHHHHHhhhcCcc-cCcCccceEEEeCCCcEEEcccccccccCcccc-cccCCceeEEeecChhhhccCCC-
Confidence            688999999999999999988 999999999999999999999999765432211 11123345667999999876654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|++++ |..||..  .....+...+..+....+  ....++..+.+++.+||+.+|++||++.++
T Consensus       196 --~~~~Di~slG~~l~~l~~~~~~p~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~  269 (275)
T cd05046         196 --STKSDVWSFGVLMWEVFTQGELPFYG--LSDEEVLNRLQAGKLELP--VPEGCPSRLYKLMTRCWAVNPKDRPSFSEL  269 (275)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCccc--cchHHHHHHHHcCCcCCC--CCCCCCHHHHHHHHHHcCCCcccCCCHHHH
Confidence              789999999999999998 7788863  344555666554432222  123578999999999999999999999999


Q ss_pred             HHHHH
Q psy1840         184 HHKLK  188 (423)
Q Consensus       184 ~~~L~  188 (423)
                      +..|.
T Consensus       270 l~~l~  274 (275)
T cd05046         270 VSALG  274 (275)
T ss_pred             HHHhc
Confidence            88764

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG1989|consensus

Probab=99.90  E-value=1.2e-23  Score=219.04  Aligned_cols=161  Identities=19%  Similarity=0.285  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-------ccccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSE--IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-------QERKLRRRKLYKAP   95 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-------~~~~~~gt~~y~AP   95 (423)
                      .++|+.|+++|+.+||..+  +| |||||-+||||+.++..||||||-+.-........       ..-....|+.|.||
T Consensus       146 VLkIf~dv~~AVa~mH~~~pPiI-HRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsP  224 (738)
T KOG1989|consen  146 VLKIFYDVCEAVAAMHYLKPPII-HRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSP  224 (738)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccc-hhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccCh
Confidence            6999999999999999975  66 99999999999999999999999875332211110       01123578899999


Q ss_pred             ccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCC
Q psy1840          96 ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus        96 E~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                      |++.-......+.|+|||+|||+||-|++...||.+.+      .-.|..+.+..|..+  .++..+.+||..||+.||+
T Consensus       225 EMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg------~laIlng~Y~~P~~p--~ys~~l~~LI~~mL~~nP~  296 (738)
T KOG1989|consen  225 EMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG------KLAILNGNYSFPPFP--NYSDRLKDLIRTMLQPNPD  296 (738)
T ss_pred             HHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc------ceeEEeccccCCCCc--cHHHHHHHHHHHHhccCcc
Confidence            99864332245899999999999999999999997532      124556666666653  5889999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q psy1840         176 LRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       176 ~RPt~~~I~~~L~~i~~~~  194 (423)
                      +||++.+|+..+.++....
T Consensus       297 ~RPnI~Qv~~~~~~l~~~~  315 (738)
T KOG1989|consen  297 ERPNIYQVLEEIFELANKP  315 (738)
T ss_pred             cCCCHHHHHHHHHHHhcCC
Confidence            9999999999998887643

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.90  E-value=3e-23  Score=196.95  Aligned_cols=154  Identities=17%  Similarity=0.319  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCC----cccccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD----ETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~----~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.|++.||+|||+.+++ |+||+|+||++++++.+||+|||++.......    .........++..|+|||.+.+
T Consensus       104 ~~~~~~qi~~~l~~lH~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~  182 (265)
T cd06631         104 FCKYTKQILDGVAYLHNNCVV-HRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINE  182 (265)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcC
Confidence            457899999999999999987 99999999999999999999999977542211    1111223457888999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ...   +.++||||||+++|++++|..||....  .......+.......+.. ...++.++.+++++||+.+|++||++
T Consensus       183 ~~~---~~~~Dv~slG~~~~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~p~~Rp~~  256 (265)
T cd06631         183 SGY---GRKSDIWSIGCTVFEMATGKPPLASMD--RLAAMFYIGAHRGLMPRL-PDSFSAAAIDFVTSCLTRDQHERPSA  256 (265)
T ss_pred             CCC---cchhhHHHHHHHHHHHHhCCCccccCC--hHHHHHHhhhccCCCCCC-CCCCCHHHHHHHHHHhcCCcccCCCH
Confidence            654   789999999999999999999996432  222222222222222322 23578999999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .+++.
T Consensus       257 ~~~l~  261 (265)
T cd06631         257 LQLLR  261 (265)
T ss_pred             HHHhc
Confidence            98865

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.90  E-value=1.1e-23  Score=210.72  Aligned_cols=158  Identities=14%  Similarity=0.151  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC-
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL-  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-  103 (423)
                      ...++.||+.||+|||+.+++ ||||||+|||++.++.+||+|||++........ .......||+.|+|||++.+... 
T Consensus       144 ~~~~~~qil~aL~~LH~~~Iv-HrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~~~  221 (370)
T cd05621         144 AKFYTAEVVLALDAIHSMGLI-HRDVKPDNMLLDKHGHLKLADFGTCMKMDETGM-VRCDTAVGTPDYISPEVLKSQGGD  221 (370)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ecCCCHHHEEECCCCCEEEEecccceecccCCc-eecccCCCCcccCCHHHHhccCCC
Confidence            567899999999999999998 999999999999999999999999876532211 12235578999999999875431 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCC--CCCCHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPE--LRPDLR  181 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~--~RPt~~  181 (423)
                      ...+.++||||+||++|||++|..||...  +..+....+..............++..+.+++..|+..++.  .|+++.
T Consensus       222 ~~~~~~~DiwSlG~ilyell~G~~Pf~~~--~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~  299 (370)
T cd05621         222 GYYGRECDWWSVGVFLFEMLVGDTPFYAD--SLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVE  299 (370)
T ss_pred             CCCCcccCEEeehHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHH
Confidence            12478999999999999999999999743  34455555554322111111235688999999999985554  388999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       300 e~l~h  304 (370)
T cd05621         300 EIKQH  304 (370)
T ss_pred             HHhcC
Confidence            88764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.90  E-value=3.3e-23  Score=198.48  Aligned_cols=147  Identities=21%  Similarity=0.314  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-------cEEEeccCCcccccCCCcccccccccCCccccCCcc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-------VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL   97 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-------~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~   97 (423)
                      ++.++.||+.||+|||+++++ ||||||+||+++..+       .+|++|||++......      ....++..|+|||.
T Consensus       119 ~~~i~~qi~~~l~~lH~~~ii-H~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~------~~~~~~~~~~aPe~  191 (274)
T cd05076         119 KITVAQQLASALSYLEDKNLV-HGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR------EERVERIPWIAPEC  191 (274)
T ss_pred             HHHHHHHHHHHHHHHHcCCcc-CCCCCcccEEEeccCcccCccceeeecCCccccccccc------cccccCCcccCchh
Confidence            789999999999999999998 999999999997643       4899999987543211      12345677999998


Q ss_pred             ccCCCCCCCCCccchHHHHHHHHHHH-hCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCC
Q psy1840          98 LRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPEL  176 (423)
Q Consensus        98 l~~~~~~~~s~ksDVyS~Giil~ell-tg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~  176 (423)
                      +.+..  ..+.++||||||+++||++ +|..||...  ...+......... ..|    ....+.+.+++.+||+.+|++
T Consensus       192 ~~~~~--~~~~~~Dv~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~~-~~~----~~~~~~~~~li~~cl~~~p~~  262 (274)
T cd05076         192 VPGGN--SLSTAADKWSFGTTLLEICFDGEVPLKER--TPSEKERFYEKKH-RLP----EPSCKELATLISQCLTYEPTQ  262 (274)
T ss_pred             hcCCC--CCCcHHHHHHHHHHHHHHHhCCCCCcccc--ChHHHHHHHHhcc-CCC----CCCChHHHHHHHHHcccChhh
Confidence            87642  2489999999999999995 688898643  2233322222211 111    123568999999999999999


Q ss_pred             CCCHHHHHHHH
Q psy1840         177 RPDLRFVHHKL  187 (423)
Q Consensus       177 RPt~~~I~~~L  187 (423)
                      ||++.+|++.|
T Consensus       263 Rps~~~il~~L  273 (274)
T cd05076         263 RPSFRTILRDL  273 (274)
T ss_pred             CcCHHHHHHhh
Confidence            99999998876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=2.5e-23  Score=197.65  Aligned_cols=155  Identities=17%  Similarity=0.276  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||+++.++.+||+|||++.......  .......++..|+|||.+....  
T Consensus       115 ~~~~~~ql~~al~~lH~~~i~-H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~  191 (275)
T cd06608         115 IAYILRETLRGLAYLHENKVI-HRDIKGQNILLTKNAEVKLVDFGVSAQLDSTL--GRRNTFIGTPYWMAPEVIACDEQP  191 (275)
T ss_pred             HHHHHHHHHHHHHHHhcCCcc-cCCCCHHHEEEccCCeEEECCCccceecccch--hhhcCccccccccCHhHhcccccc
Confidence            568999999999999999998 99999999999999999999999976543221  1123445788899999886432  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ....+.++||||||+++|++++|..||...  ........+........ .....++..+.+++.+||..||++|||+.+
T Consensus       192 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~  268 (275)
T cd06608         192 DASYDARSDVWSLGITAIELADGKPPLCDM--HPMRALFKIPRNPPPTL-KSPENWSKKFNDFISECLIKNYEQRPFMEE  268 (275)
T ss_pred             cCCccccccHHHhHHHHHHHHhCCCCcccc--chHHHHHHhhccCCCCC-CchhhcCHHHHHHHHHHhhcChhhCcCHHH
Confidence            123478899999999999999999999642  22233333333221111 112246789999999999999999999999


Q ss_pred             HHH
Q psy1840         183 VHH  185 (423)
Q Consensus       183 I~~  185 (423)
                      +++
T Consensus       269 ll~  271 (275)
T cd06608         269 LLE  271 (275)
T ss_pred             Hhc
Confidence            875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.90  E-value=3e-23  Score=202.08  Aligned_cols=159  Identities=19%  Similarity=0.292  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ ||||+|+||+++.++.+||+|||++......      ....++..|+|||.+.+....
T Consensus       117 ~~~~~~~l~~~l~~LH~~~i~-H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~  189 (308)
T cd06634         117 IAAVTHGALQGLAYLHSHNMI-HRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NXFVGTPYWMAPEVILAMDEG  189 (308)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCHHhEEECCCCcEEECCcccceeecCc------ccccCCccccCHHHHhhcccC
Confidence            578899999999999999998 9999999999999999999999997654321      234567789999997532211


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      ..+.++|||||||++|+|++|..||...  ...+....+..+.  .+......++..+.+++.+||+.+|++||++.+++
T Consensus       190 ~~~~~~Di~slG~il~el~~g~~p~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll  265 (308)
T cd06634         190 QYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQNE--SPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL  265 (308)
T ss_pred             CCCcccchHHHHHHHHHHHcCCCCCccc--cHHHHHHHHhhcC--CCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHh
Confidence            3478999999999999999999998642  2333333333322  22223345788999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q psy1840         185 HKLKEMNAGL  194 (423)
Q Consensus       185 ~~L~~i~~~~  194 (423)
                      ..........
T Consensus       266 ~~~~~~~~~~  275 (308)
T cd06634         266 KHRFVLRERP  275 (308)
T ss_pred             hCccccccCC
Confidence            8765555433

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.90  E-value=1.8e-23  Score=198.81  Aligned_cols=152  Identities=19%  Similarity=0.293  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-ccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++........ ........++..|+|||.+.+..+
T Consensus       108 ~~~~~~qi~~~l~~LH~~~i~-H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  186 (266)
T cd06651         108 TRKYTRQILEGMSYLHSNMIV-HRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGY  186 (266)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-eCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCC
Confidence            568999999999999999987 999999999999999999999999875432111 111123457788999999977654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|||||||++||+++|+.||...  ...+.+..... ....|..+ ..+++.+..++ +||..+|++||++.+|
T Consensus       187 ---~~~~Dv~slG~i~~el~~g~~pf~~~--~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~li-~~~~~~p~~Rp~~~ei  258 (266)
T cd06651         187 ---GRKADVWSLGCTVVEMLTEKPPWAEY--EAMAAIFKIAT-QPTNPQLP-SHISEHARDFL-GCIFVEARHRPSAEEL  258 (266)
T ss_pred             ---CchhhhHHHHHHHHHHHHCCCCcccc--chHHHHHHHhc-CCCCCCCc-hhcCHHHHHHH-HHhcCChhhCcCHHHH
Confidence               88999999999999999999999743  22222222222 11223222 24577888888 7888999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       259 l~  260 (266)
T cd06651         259 LR  260 (266)
T ss_pred             hc
Confidence            75

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.90  E-value=6.2e-24  Score=212.77  Aligned_cols=155  Identities=21%  Similarity=0.185  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCC--------------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--------------------------   78 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~--------------------------   78 (423)
                      ...++.||+.||+|||+.|++ ||||||+||+++.++.+||+|||++.......                          
T Consensus       103 ~~~~~~qi~~al~~lH~~~iv-HrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (376)
T cd05598         103 ARFYIAELTCAIESVHKMGFI-HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEID  181 (376)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccc
Confidence            356789999999999999998 99999999999999999999999974221000                          


Q ss_pred             ---------------cccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHH
Q psy1840          79 ---------------ETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSV  143 (423)
Q Consensus        79 ---------------~~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i  143 (423)
                                     .........||+.|+|||++.+..+   +.++|||||||++|||++|+.||...  ...+....+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~DiwSlGvilyell~G~~Pf~~~--~~~~~~~~i  256 (376)
T cd05598         182 RCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGY---TQLCDWWSVGVILYEMLVGQPPFLAD--TPAETQLKV  256 (376)
T ss_pred             cccccchhhhhhhhcccccccccCCCccccCHHHHcCCCC---CcceeeeeccceeeehhhCCCCCCCC--CHHHHHHHH
Confidence                           0000123468999999999987655   88999999999999999999999743  334444444


Q ss_pred             hcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC---CHHHHHHH
Q psy1840         144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP---DLRFVHHK  186 (423)
Q Consensus       144 ~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP---t~~~I~~~  186 (423)
                      .......+......+++++.+++.+|+ .+|.+|+   ++.+++..
T Consensus       257 ~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         257 INWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             hccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCC
Confidence            432222221122357889999999987 5999999   88888654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.90  E-value=3.7e-23  Score=197.09  Aligned_cols=158  Identities=21%  Similarity=0.396  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||+|+||+++.++.++|+|||++................++..|+|||.+.... .
T Consensus       110 ~~~~~~qi~~~l~~lH~~~i~-H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~-~  187 (272)
T cd06629         110 VRFFTEQVLEGLAYLHSKGIL-HRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYS-Q  187 (272)
T ss_pred             HHHHHHHHHHHHHHHhhCCee-ecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhcccc-C
Confidence            467899999999999999988 99999999999999999999999987543222222223445778899999987644 1


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ..+.++|+||||+++|++++|..||....  ..+....+...  ....+......++.++.+++.+||..+|++||++.+
T Consensus       188 ~~~~~~Dv~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  265 (272)
T cd06629         188 GYSAKVDIWSLGCVVLEMFAGRRPWSDEE--AIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARE  265 (272)
T ss_pred             CCCccchhHHHHHHHHHHHhCCCCCcCcc--hHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHH
Confidence            24889999999999999999999996322  22222222111  111122222356889999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      |++.
T Consensus       266 il~~  269 (272)
T cd06629         266 LLQH  269 (272)
T ss_pred             HhhC
Confidence            8753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.90  E-value=2.9e-23  Score=200.74  Aligned_cols=157  Identities=22%  Similarity=0.351  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-  102 (423)
                      ...++.|++.||.|||+. |++ ||||+|+||++++++.+||+|||++.........   ....++..|+|||.+.+.. 
T Consensus       116 ~~~i~~~i~~~l~~lH~~~~i~-H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~  191 (296)
T cd06618         116 LGKMTVAIVKALHYLKEKHGVI-HRDVKPSNILLDASGNVKLCDFGISGRLVDSKAK---TRSAGCAAYMAPERIDPPDP  191 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhCCEe-cCCCcHHHEEEcCCCCEEECccccchhccCCCcc---cCCCCCccccCHhhcCCCCC
Confidence            568999999999999974 776 9999999999999999999999998654322111   2234667899999987543 


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ....+.++||||||+++|+|++|+.||.... ...+....+......... ....++.++.+++.+||+.||++||++.+
T Consensus       192 ~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rp~~~~  269 (296)
T cd06618         192 NPKYDIRADVWSLGISLVELATGQFPYKNCK-TEFEVLTKILQEEPPSLP-PNEGFSPDFCSFVDLCLTKDHRKRPKYRE  269 (296)
T ss_pred             ccccccchhHHHHHHHHHHHHhCCCCCCcch-hHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHHHHccCChhhCCCHHH
Confidence            1234789999999999999999999996422 223334444333211111 11247889999999999999999999999


Q ss_pred             HHHHH
Q psy1840         183 VHHKL  187 (423)
Q Consensus       183 I~~~L  187 (423)
                      ++...
T Consensus       270 il~~~  274 (296)
T cd06618         270 LLQHP  274 (296)
T ss_pred             HhcCh
Confidence            97653

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=3.6e-23  Score=198.16  Aligned_cols=156  Identities=20%  Similarity=0.299  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.++|+|||++........  ......++..|+|||.+....  
T Consensus       105 ~~~~~~ql~~~l~~lh~~~i~-h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~  181 (280)
T cd06611         105 IRYVCRQMLEALNFLHSHKVI-HRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ--KRDTFIGTPYWMAPEVVACETFK  181 (280)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCChhhEEECCCCCEEEccCccchhhccccc--ccceeecchhhcCHHHHhhcccC
Confidence            578999999999999999998 999999999999999999999998765432211  112345788899999986332  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ....+.++|+||||+++|||++|..||...  ...+....+..+...... .+..++.++.+++.+||+.+|++||++.+
T Consensus       182 ~~~~~~~sDi~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~  258 (280)
T cd06611         182 DNPYDYKADIWSLGITLIELAQMEPPHHEL--NPMRVLLKILKSEPPTLD-QPSKWSSSFNDFLKSCLVKDPDDRPTAAE  258 (280)
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCcccC--CHHHHHHHHhcCCCCCcC-CcccCCHHHHHHHHHHhccChhhCcCHHH
Confidence            112477999999999999999999999643  334444555443222111 12357889999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       259 il~~  262 (280)
T cd06611         259 LLKH  262 (280)
T ss_pred             HhcC
Confidence            9764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.90  E-value=3.2e-23  Score=198.94  Aligned_cols=156  Identities=19%  Similarity=0.270  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+....  
T Consensus       126 ~~~~~~~i~~~l~~lH~~~i~-H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~  202 (286)
T cd06638         126 IAYILHEALMGLQHLHVNKTI-HRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRL--RRNTSVGTPFWMAPEVIACEQQL  202 (286)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccCCCHHhEEECCCCCEEEccCCceeecccCCC--ccccccCCCcccChhhhchhhhc
Confidence            457899999999999999998 999999999999999999999999875532211  123346788899999986432  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ...++.++|||||||++|||++|+.||....  ............... ......++..+.+++.+||+.+|++||++.+
T Consensus       203 ~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  279 (286)
T cd06638         203 DSTYDARCDVWSLGITAIELGDGDPPLADLH--PMRALFKIPRNPPPT-LHQPELWSNEFNDFIRKCLTKDYEKRPTVSD  279 (286)
T ss_pred             cccccchhhhhhHHHHHHHHhcCCCCCCCCc--hhHHHhhccccCCCc-ccCCCCcCHHHHHHHHHHccCCcccCCCHHH
Confidence            1134789999999999999999999996432  222222222221111 1112346788999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      |++.
T Consensus       280 ll~~  283 (286)
T cd06638         280 LLQH  283 (286)
T ss_pred             Hhhc
Confidence            9864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.90  E-value=3.7e-23  Score=195.15  Aligned_cols=151  Identities=20%  Similarity=0.377  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.|+.|||+.+++ |+||+|+||+++.++.++|+|||++.........  .....++..|+|||.+.+... 
T Consensus       103 ~~~~~~~l~~~l~~lh~~~i~-h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~pe~~~~~~~-  178 (256)
T cd08218         103 ILDWFVQICLALKHVHDRKIL-HRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVEL--ARTCIGTPYYLSPEICENRPY-  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cCCCCHHHEEEcCCCCEEEeeccceeecCcchhh--hhhccCCccccCHHHhCCCCC-
Confidence            578999999999999999988 9999999999999999999999998754322211  123457788999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||++++++++|..||..  ....+....+..+..  +.. ...++.++.+++.+||+.+|++||++.+|+
T Consensus       179 --~~~~Dv~slG~i~~~l~~g~~~~~~--~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl  251 (256)
T cd08218         179 --NNKSDIWALGCVLYEMCTLKHAFEA--GNMKNLVLKIIRGSY--PPV-SSHYSYDLRNLVSQLFKRNPRDRPSVNSIL  251 (256)
T ss_pred             --CCccchhHHHHHHHHHHcCCCCccC--CCHHHHHHHHhcCCC--CCC-cccCCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence              7899999999999999999999963  234555555544432  222 235788999999999999999999999997


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       252 ~~  253 (256)
T cd08218         252 EK  253 (256)
T ss_pred             hC
Confidence            63

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG0611|consensus

Probab=99.90  E-value=2.8e-23  Score=198.78  Aligned_cols=150  Identities=20%  Similarity=0.350  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .-.|..||++++.|+|+++++ |||||.+|||+|.++++||+|||++.......   ...+++|++.|.+||++.|..| 
T Consensus       155 aRhfFRQIvSAVhYCHknrVv-HRDLKLENILLD~N~NiKIADFGLSNly~~~k---fLqTFCGSPLYASPEIvNG~PY-  229 (668)
T KOG0611|consen  155 ARHFFRQIVSAVHYCHKNRVV-HRDLKLENILLDQNNNIKIADFGLSNLYADKK---FLQTFCGSPLYASPEIVNGTPY-  229 (668)
T ss_pred             HHHHHHHHHHHHHHHhhccce-ecccchhheeecCCCCeeeeccchhhhhcccc---HHHHhcCCcccCCccccCCCCC-
Confidence            468999999999999999998 99999999999999999999999987764332   2367899999999999998876 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                       -++.+|.||+|++||-++.|..||++  .+...++.++..|....|..+     .....||..||-.||+.|-|+.+|.
T Consensus       230 -~GPEVDsWsLGvLLYtLVyGtMPFDG--~Dhk~lvrQIs~GaYrEP~~P-----SdA~gLIRwmLmVNP~RRATieDiA  301 (668)
T KOG0611|consen  230 -KGPEVDSWSLGVLLYTLVYGTMPFDG--RDHKRLVRQISRGAYREPETP-----SDASGLIRWMLMVNPERRATIEDIA  301 (668)
T ss_pred             -CCCccchhhHHHHHHHHhhcccccCC--chHHHHHHHhhcccccCCCCC-----chHHHHHHHHHhcCcccchhHHHHh
Confidence             37899999999999999999999984  456788999999988777653     4677899999999999999999997


Q ss_pred             HHH
Q psy1840         185 HKL  187 (423)
Q Consensus       185 ~~L  187 (423)
                      ...
T Consensus       302 sHW  304 (668)
T KOG0611|consen  302 SHW  304 (668)
T ss_pred             hhh
Confidence            754

>KOG0605|consensus

Probab=99.90  E-value=1.1e-23  Score=208.43  Aligned_cols=153  Identities=19%  Similarity=0.238  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCC-------------------C--ccc---
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ-------------------D--ETG---   81 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~-------------------~--~~~---   81 (423)
                      -..+.+++.|++-||+.|+| ||||||+|+|||..|++||+||||+.-+...                   .  ...   
T Consensus       244 rfYiaE~vlAI~~iH~~gyI-HRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (550)
T KOG0605|consen  244 RFYIAETVLAIESIHQLGYI-HRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFN  322 (550)
T ss_pred             HHHHHHHHHHHHHHHHcCcc-cccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccc
Confidence            35678999999999999999 9999999999999999999999997432110                   0  000   


Q ss_pred             --c-------------------cccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHH
Q psy1840          82 --Q-------------------ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEII  140 (423)
Q Consensus        82 --~-------------------~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~  140 (423)
                        .                   .....|||-|+|||++.+..+   +..+|.||+|||+|||+.|-+||.  ..++.+..
T Consensus       323 ~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY---~~~cDwWSLG~ImyEmLvGyPPF~--s~tp~~T~  397 (550)
T KOG0605|consen  323 TPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGY---GKECDWWSLGCIMYEMLVGYPPFC--SETPQETY  397 (550)
T ss_pred             cccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCC---CccccHHHHHHHHHHHHhCCCCCC--CCCHHHHH
Confidence              0                   123578999999999999876   999999999999999999999997  45678888


Q ss_pred             HHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC---HHHHHH
Q psy1840         141 TSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD---LRFVHH  185 (423)
Q Consensus       141 ~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt---~~~I~~  185 (423)
                      .++..............++.+..+||.+|+. ||++|.-   +.||.+
T Consensus       398 rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~  444 (550)
T KOG0605|consen  398 RKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKK  444 (550)
T ss_pred             HHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhc
Confidence            8887654222222234577999999999999 9999964   566644

>KOG4279|consensus

Probab=99.90  E-value=3.4e-24  Score=216.27  Aligned_cols=152  Identities=23%  Similarity=0.362  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      -...||++||.|||.+.|+ |||||-.||||+ -.|.+||+|||.++.+.+-.+  .+.++.||..|||||++..+.. -
T Consensus       679 fYtkQILeGLkYLHen~IV-HRDIKGDNVLvNTySGvlKISDFGTsKRLAginP--~TETFTGTLQYMAPEvIDqG~R-G  754 (1226)
T KOG4279|consen  679 FYTKQILEGLKYLHENKIV-HRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINP--CTETFTGTLQYMAPEVIDQGPR-G  754 (1226)
T ss_pred             HHHHHHHHHhhhhhhccee-eccccCCcEEEeeccceEEecccccchhhccCCc--cccccccchhhhChHhhccCCc-C
Confidence            3478999999999999998 999999999996 689999999999988765543  3457889999999999987653 4


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++.++|||||||++.||.||++||...+..... .-++-.-+ ..|+. +...+.+.+++|.+|+..+|.+||++.+++.
T Consensus       755 YG~aADIWS~GCT~vEMATGrPPF~ElgspqAA-MFkVGmyK-vHP~i-Peelsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  755 YGKAADIWSFGCTMVEMATGRPPFVELGSPQAA-MFKVGMYK-VHPPI-PEELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             CCchhhhhhccceeEeeccCCCCeeecCChhHh-hhhhccee-cCCCC-cHHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            589999999999999999999999765543322 22222211 12333 3467889999999999999999999999876

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.90  E-value=7.5e-23  Score=193.62  Aligned_cols=157  Identities=24%  Similarity=0.403  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccc--cccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ--ERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~--~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||+++.++.+||+|||++...........  .....++..|+|||.+.+..
T Consensus       101 ~~~i~~~i~~~l~~lh~~~i~-H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~  179 (264)
T cd06626         101 IRVYTLQLLEGLAYLHSHGIV-HRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGK  179 (264)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCC
Confidence            578899999999999999998 999999999999999999999999876543322111  12345678899999998754


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCC-CCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS-SLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~-~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      ....+.++||||||+++|++++|+.||.... ........+..+  ..+..+ ...+++.+.+++.+||+.+|++||++.
T Consensus       180 ~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  256 (264)
T cd06626         180 GKGHGRAADIWSLGCVVLEMATGKRPWSELD-NEFQIMFHVGAG--HKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTAS  256 (264)
T ss_pred             CCCCCcccchHHHHHHHHHHHhCCCCccCCc-chHHHHHHHhcC--CCCCCCcccccCHHHHHHHHHHccCCcccCCCHH
Confidence            2234899999999999999999999996433 222333333322  122221 224588999999999999999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      +++.
T Consensus       257 ~i~~  260 (264)
T cd06626         257 ELLQ  260 (264)
T ss_pred             HHhc
Confidence            9864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.90  E-value=3.4e-23  Score=195.49  Aligned_cols=155  Identities=25%  Similarity=0.358  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc------ccccccccCCccccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE------TGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~------~~~~~~~~gt~~y~APE~l   98 (423)
                      +..++.|++.||.|||+.+++ ||||+|+||+++.++.+||+|||++........      ........++..|+|||..
T Consensus        95 ~~~i~~qi~~~L~~lH~~~i~-H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~  173 (265)
T cd05579          95 ARIYIAEIVLALEYLHSNGII-HRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVI  173 (265)
T ss_pred             HHHHHHHHHHHHHHHHHcCee-cCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHh
Confidence            678999999999999999988 999999999999999999999999765432211      1122334567789999998


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      .....   +.++||||||+++|++++|..||..  ....+....+..+....|..  ...+..+.+++.+||+.+|.+||
T Consensus       174 ~~~~~---~~~~Dv~slG~~~~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~l~~~p~~Rp  246 (265)
T cd05579         174 LGQGH---SKTVDWWSLGCILYEFLVGIPPFHG--ETPEEIFQNILNGKIEWPED--VEVSDEAIDLISKLLVPDPEKRL  246 (265)
T ss_pred             cCCCC---CcchhhHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHhcCCcCCCcc--ccCCHHHHHHHHHHhcCCHhhcC
Confidence            77554   8899999999999999999999963  34556666665544333322  12488999999999999999999


Q ss_pred             CHHHHHHHH
Q psy1840         179 DLRFVHHKL  187 (423)
Q Consensus       179 t~~~I~~~L  187 (423)
                      |+..+.+.|
T Consensus       247 t~~~~~~~l  255 (265)
T cd05579         247 GAKSIEEIK  255 (265)
T ss_pred             CCccHHHHh
Confidence            995555443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.90  E-value=3.1e-23  Score=204.51  Aligned_cols=157  Identities=18%  Similarity=0.225  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc---cccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~---~~~~~~~gt~~y~APE~l~~~  101 (423)
                      +..++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++.........   .......++..|+|||.+.+.
T Consensus       109 ~~~i~~qi~~~L~~LH~~~i~-H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  187 (337)
T cd07852         109 KRYIMYQLLKALKYIHSGNVI-HRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGS  187 (337)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeecc
Confidence            567999999999999999998 9999999999999999999999998765433211   122334578889999988653


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---------------------------CCCCCCCCC
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---------------------------GSGLRPDTS  154 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---------------------------~~~~~p~~~  154 (423)
                      .  ..+.++||||||+++|+|++|+.||....  ..+....+..                           .....+...
T Consensus       188 ~--~~~~~sDi~slG~~l~el~tg~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (337)
T cd07852         188 T--RYTKGVDMWSVGCILGEMLLGKPLFPGTS--TLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDEL  263 (337)
T ss_pred             c--cccccchHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhh
Confidence            3  23789999999999999999999996422  1111111111                           000111111


Q ss_pred             CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       155 ~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ...++.++.+++.+||+.+|++|||+.++++.
T Consensus       264 ~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         264 LPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             ccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            12368899999999999999999999998863

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.89  E-value=5.1e-23  Score=195.84  Aligned_cols=154  Identities=21%  Similarity=0.356  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.|+.|||+.|++ ||||||+||+++. ++.+||+|||++........  ......++..|+|||.+.+...
T Consensus       110 ~~~~~~qi~~al~~lH~~~i~-h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~  186 (268)
T cd06624         110 IIFYTKQILEGLKYLHDNQIV-HRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINP--CTETFTGTLQYMAPEVIDKGPR  186 (268)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecCCCHHHEEEcCCCCeEEEecchhheecccCCC--ccccCCCCccccChhhhccccc
Confidence            567889999999999999988 9999999999986 67999999999865432221  1123356788999999865431


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                       ..+.++||||||+++|++++|..||........... .... ....+.. +..+++++.+++.+||+.+|++||++.++
T Consensus       187 -~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~-~~~~-~~~~~~~-~~~~~~~~~~li~~~l~~~p~~Rpt~~~l  262 (268)
T cd06624         187 -GYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMF-KVGM-FKIHPEI-PESLSAEAKNFILRCFEPDPDKRASAHDL  262 (268)
T ss_pred             -cCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHh-hhhh-hccCCCC-CcccCHHHHHHHHHHcCCCchhCCCHHHH
Confidence             247899999999999999999999965332222111 1111 1112222 23578899999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      +.
T Consensus       263 l~  264 (268)
T cd06624         263 LQ  264 (268)
T ss_pred             Hh
Confidence            75

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.89  E-value=1.9e-23  Score=209.72  Aligned_cols=154  Identities=22%  Similarity=0.222  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-------------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-------------------------   79 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-------------------------   79 (423)
                      ...++.||+.||+|||+.|++ ||||||+|||++.++.+||+|||++........                         
T Consensus       103 ~~~~~~qi~~al~~lH~~~iv-HrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (382)
T cd05625         103 ARFYIAELTCAVESVHKMGFI-HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPA  181 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccc
Confidence            356789999999999999988 999999999999999999999999643210000                         


Q ss_pred             --------------------ccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHH
Q psy1840          80 --------------------TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI  139 (423)
Q Consensus        80 --------------------~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i  139 (423)
                                          ........||+.|+|||++.+..+   +.++|||||||++|||++|+.||...  +..+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~---~~~~DiwSlGvil~elltG~~Pf~~~--~~~~~  256 (382)
T cd05625         182 NCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGY---TQLCDWWSVGVILYEMLVGQPPFLAQ--TPLET  256 (382)
T ss_pred             cccccccccchhhhhccccccccccccccCcccCCHHHhcCCCC---CCeeeEEechHHHHHHHhCCCCCCCC--CHHHH
Confidence                                000123468899999999987655   88999999999999999999999742  33444


Q ss_pred             HHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC---HHHHHH
Q psy1840         140 ITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD---LRFVHH  185 (423)
Q Consensus       140 ~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt---~~~I~~  185 (423)
                      ...+.......+.......++++.+++.+++ .+|++|++   +.+++.
T Consensus       257 ~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  304 (382)
T cd05625         257 QMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKA  304 (382)
T ss_pred             HHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhc
Confidence            4444432211111122356889999998876 59999987   776654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.89  E-value=5.4e-23  Score=194.86  Aligned_cols=152  Identities=20%  Similarity=0.320  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ |+||+|+||+++.++.+||+|||++.......   ......++..|++||.+.+..+ 
T Consensus        95 ~~~~~~~i~~~l~~lH~~~~~-h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~---~~~~~~~~~~~~~PE~~~~~~~-  169 (262)
T cd05572          95 ARFYIACVVLAFEYLHNRGII-YRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ---KTWTFCGTPEYVAPEIILNKGY-  169 (262)
T ss_pred             HHHHHHHHHHHHHHHhhCCcc-cCCCCHHHEEEcCCCCEEEeeCCcccccCccc---ccccccCCcCccChhHhcCCCC-
Confidence            567899999999999999998 99999999999999999999999987654332   1123457788999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-----  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-----  179 (423)
                        +.++|+||||+++|++++|..||........++...+..+.. .+.. +...+.++.+++.+||+.+|++||+     
T Consensus       170 --~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~  245 (262)
T cd05572         170 --DFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNG-KLEF-PNYIDKAAKDLIKQLLRRNPEERLGNLKGG  245 (262)
T ss_pred             --CChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCC-CCCC-CcccCHHHHHHHHHHccCChhhCcCCcccC
Confidence              889999999999999999999997654334555555553221 1222 2234789999999999999999999     


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       246 ~~~l~~  251 (262)
T cd05572         246 IKDIKK  251 (262)
T ss_pred             HHHHhc
Confidence            777665

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.89  E-value=4.6e-23  Score=197.12  Aligned_cols=152  Identities=18%  Similarity=0.253  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||+++. +.+||+|||++.........   ....++..|+|||.+....  
T Consensus       102 ~~~~~~qi~~~L~~LH~~~i~-H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~--  174 (282)
T cd07831         102 VKSYMYQLLKSLDHMHRNGIF-HRDIKPENILIKD-DILKLADFGSCRGIYSKPPY---TEYISTRWYRAPECLLTDG--  174 (282)
T ss_pred             HHHHHHHHHHHHHHHHHCCce-ecccCHHHEEEcC-CCeEEEecccccccccCCCc---CCCCCCcccCChhHhhcCC--
Confidence            678999999999999999998 9999999999999 99999999998765322211   2345678899999775433  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---------------CCCC---CCCCC-------CCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---------------GSGL---RPDTS-------SLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---------------~~~~---~p~~~-------~~~~~  159 (423)
                      ..+.++|||||||++|||++|..||...  +..+.+..+..               ....   .|...       ...++
T Consensus       175 ~~~~~~Di~slGv~l~el~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (282)
T cd07831         175 YYGPKMDIWAVGCVFFEILSLFPLFPGT--NELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNAS  252 (282)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCcCCCCC--CHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHccccc
Confidence            2378999999999999999999999643  22222222211               0000   00000       12457


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .++.+++.+||+.+|++||++.+++.
T Consensus       253 ~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         253 AEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             HHHHHHHHHHhccCcccccCHHHHhh
Confidence            89999999999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.89  E-value=4e-23  Score=198.01  Aligned_cols=154  Identities=19%  Similarity=0.298  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       102 ~~~~~~ql~~~l~~LH~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~--  176 (286)
T cd07847         102 IKKIIWQTLQAVNFCHKHNCI-HRDVKPENILITKQGQIKLCDFGFARILTGPGD--DYTDYVATRWYRAPELLVGDT--  176 (286)
T ss_pred             HHHHHHHHHHHHHHHHHCCce-ecCCChhhEEEcCCCcEEECccccceecCCCcc--cccCcccccccCCHHHHhCCC--
Confidence            689999999999999999998 999999999999999999999999876543321  112334677899999987533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC---------------C----CCCCCCC--------CCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG---------------S----GLRPDTS--------SLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~---------------~----~~~p~~~--------~~~  157 (423)
                      ..+.++||||||+++|||++|..||....  ..+....+...               .    ...|...        ...
T Consensus       177 ~~~~~~Di~slG~i~~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (286)
T cd07847         177 QYGPPVDVWAIGCVFAELLTGQPLWPGKS--DVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPN  254 (286)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhcc
Confidence            23789999999999999999999997532  22222211110               0    0000000        124


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .+..+.+++.+||+.+|++||++.+++.
T Consensus       255 ~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         255 ISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             CCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            5788999999999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.89  E-value=7.6e-23  Score=193.13  Aligned_cols=151  Identities=17%  Similarity=0.352  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHHH-----hCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLH-----DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH-----~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      .+.++.||+.|+.|||     +.+++ ||||+|+||+++.++.+||+|||++.........  .....++..|+|||.+.
T Consensus       107 ~~~~~~~i~~~l~~lH~~~~~~~~i~-h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~pE~~~  183 (265)
T cd08217         107 IWRILTQLLLALYECHNRSDPGNTVL-HRDLKPANIFLDANNNVKLGDFGLAKILGHDSSF--AKTYVGTPYYMSPEQLN  183 (265)
T ss_pred             HHHHHHHHHHHHHHHhcCccccCcce-ecCCCHHHEEEecCCCEEEecccccccccCCccc--ccccccCCCccChhhhc
Confidence            6789999999999999     88888 9999999999999999999999998765433211  12346788899999987


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +...   +.++|+||||+++|++++|..||...  ...++...+..+..  +. .....+..+.+++.+||+.+|++||+
T Consensus       184 ~~~~---~~~~Dv~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~p~~Rp~  255 (265)
T cd08217         184 HMSY---DEKSDIWSLGCLIYELCALSPPFTAR--NQLQLASKIKEGKF--RR-IPYRYSSELNEVIKSMLNVDPDKRPS  255 (265)
T ss_pred             CCCC---CchhHHHHHHHHHHHHHHCCCcccCc--CHHHHHHHHhcCCC--CC-CccccCHHHHHHHHHHccCCcccCCC
Confidence            7654   88999999999999999999999753  24556666655432  11 22357889999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.+|++.
T Consensus       256 ~~~il~~  262 (265)
T cd08217         256 TEELLQL  262 (265)
T ss_pred             HHHHhhC
Confidence            9998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.89  E-value=7.4e-23  Score=196.59  Aligned_cols=155  Identities=19%  Similarity=0.290  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+. +++ ||||||+||+++.++.+||+|||++.......    .....++..|+|||.+.+...
T Consensus       104 ~~~~~~~i~~~l~~LH~~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~  178 (286)
T cd06622         104 LRRITYAVVKGLKFLKEEHNII-HRDVKPTNVLVNGNGQVKLCDFGVSGNLVASL----AKTNIGCQSYMAPERIKSGGP  178 (286)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEe-eCCCCHHHEEECCCCCEEEeecCCcccccCCc----cccCCCccCccCcchhcCCCC
Confidence            578999999999999974 777 99999999999999999999999986543221    123356778999999865421


Q ss_pred             ---CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         104 ---PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       104 ---~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                         ...+.++|+|||||++|++++|..||....  .......+.......+......++.++.+++.+||+.+|++||++
T Consensus       179 ~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  256 (286)
T cd06622         179 NQNPTYTVQSDVWSLGLSILEMALGRYPYPPET--YANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTY  256 (286)
T ss_pred             CccCCCCcccchHhHHHHHHHHHhCCCCCCCcc--hhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCH
Confidence               123789999999999999999999996432  222222222111111112223578999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .+++..
T Consensus       257 ~~l~~~  262 (286)
T cd06622         257 AQLLEH  262 (286)
T ss_pred             HHHhcC
Confidence            999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0604|consensus

Probab=99.89  E-value=2.1e-23  Score=193.13  Aligned_cols=155  Identities=18%  Similarity=0.264  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc---CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID---SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld---~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      .-.|+.||+.++.|||+.+|- ||||||+|+|..   .+..+||+|||+++....   .....+.+-|+.|.|||++...
T Consensus       163 a~eI~~qI~~Av~~lH~~nIA-HRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~---~~~L~TPc~TPyYvaPevlg~e  238 (400)
T KOG0604|consen  163 ASEIMKQIGLAVRYLHSMNIA-HRDLKPENLLYTTTSPNAPLKLTDFGFAKETQE---PGDLMTPCFTPYYVAPEVLGPE  238 (400)
T ss_pred             HHHHHHHHHHHHHHHHhcchh-hccCChhheeeecCCCCcceEecccccccccCC---CccccCCcccccccCHHHhCch
Confidence            468999999999999999998 999999999996   466899999999986432   2333566789999999999776


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      .+   ...+|+||+|+++|-|++|.+||....  --......++..|....|...+..+++...++|+.+|..+|.+|.|
T Consensus       239 Ky---dkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlT  315 (400)
T KOG0604|consen  239 KY---DKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLT  315 (400)
T ss_pred             hc---CCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhhee
Confidence            55   899999999999999999999996432  1235677888899999998888889999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++...
T Consensus       316 I~~~m~h  322 (400)
T KOG0604|consen  316 IEEVMDH  322 (400)
T ss_pred             HHHhhcC
Confidence            9998764

>KOG4645|consensus

Probab=99.89  E-value=4.6e-24  Score=228.11  Aligned_cols=154  Identities=21%  Similarity=0.400  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc--ccccccccCCccccCCccccCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE--TGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+-.|++.|+.|||++||+ ||||||.||+++.+|.+|++|||.+..+.+...  ........||+.|||||++.+....
T Consensus      1338 vyt~qll~gla~LH~~gIV-HRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~k 1416 (1509)
T KOG4645|consen 1338 VYTKQLLEGLAYLHEHGIV-HRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGK 1416 (1509)
T ss_pred             HHHHHHHHHHHHHHhcCce-ecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccC
Confidence            4567999999999999998 999999999999999999999999887654432  2233567899999999999886543


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      -...++||||+|||+.||+||+.||.... +.-.+...+..|  ..|+.+. ..+.+-.+++.+|+..||.+|.++.+++
T Consensus      1417 G~~~A~DiWslGCVVlEM~tGkrPW~~~d-ne~aIMy~V~~g--h~Pq~P~-~ls~~g~dFle~Cl~~dP~~Rw~~~qll 1492 (1509)
T KOG4645|consen 1417 GHGGAADIWSLGCVVLEMATGKRPWAELD-NEWAIMYHVAAG--HKPQIPE-RLSSEGRDFLEHCLEQDPKMRWTASQLL 1492 (1509)
T ss_pred             CCCcchhhhcccceEEEeecCCCchhhcc-chhHHHhHHhcc--CCCCCch-hhhHhHHHHHHHHHhcCchhhhHHHHHH
Confidence            34689999999999999999999997542 234566666654  3454444 4889999999999999999998887766


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus      1493 e 1493 (1509)
T KOG4645|consen 1493 E 1493 (1509)
T ss_pred             H
Confidence            5

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.89  E-value=5.3e-23  Score=197.57  Aligned_cols=152  Identities=19%  Similarity=0.298  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++.......    .....++..|+|||.+.++.  
T Consensus        99 ~~~i~~qi~~al~~lH~~~iv-H~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~--  171 (279)
T cd05633          99 MRFYATEIILGLEHMHNRFVV-YRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVLQKGT--  171 (279)
T ss_pred             HHHHHHHHHHHHHHHHHCCcC-CCCCCHHHEEECCCCCEEEccCCcceeccccC----ccCcCCCcCccCHHHhcCCC--
Confidence            578999999999999999988 99999999999999999999999976443221    12346788999999886432  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                      ..+.++|||||||++||+++|..||..........+......  ..+. .+..++.++.+++.+||..||.+||     +
T Consensus       172 ~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~  248 (279)
T cd05633         172 AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT--VNVE-LPDSFSPELKSLLEGLLQRDVSKRLGCLGRG  248 (279)
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhc--CCcC-CccccCHHHHHHHHHHhcCCHHHhcCCCCCC
Confidence            237899999999999999999999965432222222222211  1111 2235788999999999999999999     5


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       249 ~~~~~~h  255 (279)
T cd05633         249 AQEVKEH  255 (279)
T ss_pred             HHHHHhC
Confidence            8887664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.89  E-value=4.7e-23  Score=199.79  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       106 ~~~~~~qi~~aL~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~--  180 (301)
T cd07873         106 VKLFLFQLLRGLNYCHRRKVL-HRDLKPQNLLINERGELKLADFGLARAKSIPTK--TYSNEVVTLWYRPPDILLGST--  180 (301)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-CCCCCHHHEEECCCCcEEECcCcchhccCCCCC--cccccceeecccCcHHHhCCC--
Confidence            467899999999999999998 999999999999999999999999865432211  112335678899999887543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC---------------C----CCCCC-------CCCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS---------------G----LRPDT-------SSLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~---------------~----~~p~~-------~~~~~  158 (423)
                      ..+.++||||||+++|||++|+.||...  +..+....+....               .    ..|..       ....+
T Consensus       181 ~~~~~~Dv~slG~~l~el~tg~~~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (301)
T cd07873         181 DYSTQIDMWGVGCIFYEMSTGRPLFPGS--TVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRL  258 (301)
T ss_pred             CCccHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCC
Confidence            2378999999999999999999999743  2222222221100               0    00100       11246


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +..+.+++.+||+.||.+|||+.++++.
T Consensus       259 ~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         259 DSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             CHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            7889999999999999999999998763

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.89  E-value=3.2e-23  Score=200.90  Aligned_cols=154  Identities=16%  Similarity=0.268  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+.+...
T Consensus       116 ~~~~~~~~l~~~L~~LH~~~i~-H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  192 (297)
T cd06656         116 QIAAVCRECLQALDFLHSNQVI-HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAY  192 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCCEEECcCccceEccCCcc--CcCcccCCccccCHHHHcCCCC
Confidence            3678999999999999999998 999999999999999999999999865432221  1123457788999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|+||||+++|++++|..||.....  ......+.... ..+.......+..+.+++.+||..+|++||++.+|
T Consensus       193 ---~~~~Di~slGvil~~l~tg~~pf~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  266 (297)
T cd06656         193 ---GPKVDIWSLGIMAIEMVEGEPPYLNENP--LRALYLIATNG-TPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKEL  266 (297)
T ss_pred             ---CcHHHHHHHHHHHHHHHhCCCCCCCCCc--chheeeeccCC-CCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence               7899999999999999999999964321  11111111111 11111233567889999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       267 l~~  269 (297)
T cd06656         267 LQH  269 (297)
T ss_pred             hcC
Confidence            873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.89  E-value=1e-22  Score=191.76  Aligned_cols=149  Identities=22%  Similarity=0.389  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-ccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.|+.|||++|++ ||||+|+||+++.+ +.+||+|||.+........   .....++..|+|||.+.+...
T Consensus       103 ~~~~~~~i~~~l~~lh~~~i~-h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~  178 (256)
T cd08220         103 ILHFFVQILLALHHVHTKLIL-HRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK---AYTVVGTPCYISPELCEGKPY  178 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc---ccccccCCcccCchhccCCCC
Confidence            578899999999999999997 99999999999854 5689999999876533221   123457778999999976544


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|++++|..||...  ........+..+..  +. ....++..+.+++.+||+.+|++|||+.++
T Consensus       179 ---~~~~Dv~slG~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~--~~-~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l  250 (256)
T cd08220         179 ---NQKSDIWALGCVLYELASLKRAFEAA--NLPALVLKIMSGTF--AP-ISDRYSPDLRQLILSMLNLDPSKRPQLSQI  250 (256)
T ss_pred             ---CcccchHHHHHHHHHHHhCCCCcccC--chHHHHHHHHhcCC--CC-CCCCcCHHHHHHHHHHccCChhhCCCHHHH
Confidence               88999999999999999999999743  23344444443221  11 123578899999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      +.
T Consensus       251 l~  252 (256)
T cd08220         251 MA  252 (256)
T ss_pred             hh
Confidence            75

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.89  E-value=1.9e-23  Score=208.07  Aligned_cols=154  Identities=18%  Similarity=0.215  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc------------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET------------------------   80 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~------------------------   80 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++.........                        
T Consensus       103 ~~~~~~qi~~~L~~lH~~giv-HrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (360)
T cd05627         103 TQFYIAETVLAIDAIHQLGFI-HRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRK  181 (360)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccc
Confidence            467899999999999999998 9999999999999999999999997644211100                        


Q ss_pred             ---------cccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCC
Q psy1840          81 ---------GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP  151 (423)
Q Consensus        81 ---------~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p  151 (423)
                               .......||+.|+|||++.+..+   +.++|||||||++|||++|..||..  .+..+....+........
T Consensus       182 ~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~---~~~~DiwSlGvilyel~tG~~Pf~~--~~~~~~~~~i~~~~~~~~  256 (360)
T cd05627         182 AETWKKNRRQLAYSTVGTPDYIAPEVFMQTGY---NKLCDWWSLGVIMYEMLIGYPPFCS--ETPQETYRKVMNWKETLV  256 (360)
T ss_pred             cccccccccccccccCCCccccCHHHHcCCCC---CCcceeccccceeeecccCCCCCCC--CCHHHHHHHHHcCCCcee
Confidence                     00123468999999999987655   8899999999999999999999974  344555555554221111


Q ss_pred             CCCCCCchHHHHHHHHHhhhcCCCCCCC---HHHHHH
Q psy1840         152 DTSSLDCAPSIIACMRTCWEEDPELRPD---LRFVHH  185 (423)
Q Consensus       152 ~~~~~~~~~~l~~Li~~C~~~dP~~RPt---~~~I~~  185 (423)
                      ......+++++.+++.+++ .||.+|++   +.++++
T Consensus       257 ~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  292 (360)
T cd05627         257 FPPEVPISEKAKDLILRFC-TDSENRIGSNGVEEIKS  292 (360)
T ss_pred             cCCCCCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhc
Confidence            1111246789999999876 49999985   555543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=3e-23  Score=207.93  Aligned_cols=155  Identities=17%  Similarity=0.198  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc------------cc-----------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE------------TG-----------   81 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~------------~~-----------   81 (423)
                      ...++.|++.||+|||+.|++ ||||||+|||++.++.+||+|||+++.......            ..           
T Consensus       103 ~~~~~~ql~~aL~~LH~~giv-HrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (377)
T cd05629         103 TRFYMAECVLAIEAVHKLGFI-HRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAV  181 (377)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccCCCHHHEEECCCCCEEEeeccccccccccccccccccccccccccccccccccccc
Confidence            356899999999999999998 999999999999999999999999853211000            00           


Q ss_pred             ----------------------ccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHH
Q psy1840          82 ----------------------QERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI  139 (423)
Q Consensus        82 ----------------------~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i  139 (423)
                                            ......||+.|+|||++.+..+   +.++|||||||++|||++|..||...  ...+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~DiwSlGvil~elltG~~Pf~~~--~~~~~  256 (377)
T cd05629         182 DSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGY---GQECDWWSLGAIMFECLIGWPPFCSE--NSHET  256 (377)
T ss_pred             ccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCC---CCceeeEecchhhhhhhcCCCCCCCC--CHHHH
Confidence                                  0012468899999999987655   89999999999999999999999643  33444


Q ss_pred             HHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC---CCHHHHHHH
Q psy1840         140 ITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR---PDLRFVHHK  186 (423)
Q Consensus       140 ~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R---Pt~~~I~~~  186 (423)
                      ...+..............++.++.+++.+|+. +|.+|   +++.+++..
T Consensus       257 ~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         257 YRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             HHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence            44444321111111112467899999999997 77775   588887664

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=6.4e-23  Score=200.12  Aligned_cols=153  Identities=17%  Similarity=0.228  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc------------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET------------------------   80 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~------------------------   80 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.++|+|||++.........                        
T Consensus       105 ~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (316)
T cd05574         105 ARFYAAEVLLALEYLHLLGIV-YRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSE  183 (316)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcc
Confidence            568899999999999999987 9999999999999999999999997654221110                        


Q ss_pred             ---cccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCC
Q psy1840          81 ---GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLD  157 (423)
Q Consensus        81 ---~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~  157 (423)
                         .......|+..|+|||.+.+...   +.++||||||+++|+|++|..||...  ...+....+.......+..  ..
T Consensus       184 ~~~~~~~~~~g~~~y~aPE~~~~~~~---~~~~Di~slG~ll~~l~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~--~~  256 (316)
T cd05574         184 EPSFRSNSFVGTEEYIAPEVISGDGH---GSAVDWWTLGILLYEMLYGTTPFKGS--NRDETFSNILKKEVTFPGS--PP  256 (316)
T ss_pred             cccCCCCCCcCccCCcCHHHHcCCCC---CchHHHHHHHHHHHHHhhCCCCCCCC--chHHHHHHHhcCCccCCCc--cc
Confidence               01113356788999999987654   88999999999999999999999643  2333334443332222221  23


Q ss_pred             chHHHHHHHHHhhhcCCCCCCC----HHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPD----LRFVHH  185 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt----~~~I~~  185 (423)
                      .+..+.+++++||+.+|++||+    +.+++.
T Consensus       257 ~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         257 VSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             cCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence            6889999999999999999999    666654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.89  E-value=5.6e-23  Score=221.29  Aligned_cols=162  Identities=20%  Similarity=0.265  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc----------------ccccccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE----------------TGQERKLRR   88 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~----------------~~~~~~~~g   88 (423)
                      .++++.||+.||+|||+.|++ ||||||+||+++.++.+||+|||++........                ........|
T Consensus       115 iL~I~~QIa~AL~yLHs~GII-HRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vG  193 (932)
T PRK13184        115 FLSIFHKICATIEYVHSKGVL-HRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVG  193 (932)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCC
Confidence            478999999999999999998 999999999999999999999999876521110                001123468


Q ss_pred             CccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHH
Q psy1840          89 RKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRT  168 (423)
Q Consensus        89 t~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~  168 (423)
                      |+.|+|||.+.+...   +.++|||||||++|||++|..||....  ...+........+. ...+...+++.+.+++.+
T Consensus       194 T~~YmAPE~l~g~~~---S~kSDIWSLGVILyELLTG~~PF~~~~--~~ki~~~~~i~~P~-~~~p~~~iP~~L~~LI~r  267 (932)
T PRK13184        194 TPDYMAPERLLGVPA---SESTDIYALGVILYQMLTLSFPYRRKK--GRKISYRDVILSPI-EVAPYREIPPFLSQIAMK  267 (932)
T ss_pred             CCCCCCHHHhcCCCC---CcHhHHHHHHHHHHHHHHCCCCCCCcc--hhhhhhhhhccChh-hccccccCCHHHHHHHHH
Confidence            999999999987655   899999999999999999999996422  12222111111111 011123578899999999


Q ss_pred             hhhcCCCCCC-CHHHHHHHHHHHhhh
Q psy1840         169 CWEEDPELRP-DLRFVHHKLKEMNAG  193 (423)
Q Consensus       169 C~~~dP~~RP-t~~~I~~~L~~i~~~  193 (423)
                      ||+.||++|| ++.++.+.|+....+
T Consensus       268 cL~~DP~kR~ss~eeLl~~Le~~lq~  293 (932)
T PRK13184        268 ALAVDPAERYSSVQELKQDLEPHLQG  293 (932)
T ss_pred             HccCChhhCcCHHHHHHHHHHHHHhc
Confidence            9999999996 467777777666543

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.89  E-value=1.1e-22  Score=190.18  Aligned_cols=150  Identities=21%  Similarity=0.365  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||..|++ ||||+|+||+++.++.++|+|||.+........   .....++..|+|||.+.+... 
T Consensus       100 ~~~i~~~i~~~l~~lh~~~i~-h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~~~~PE~~~~~~~-  174 (253)
T cd05122         100 IAYVCKELLKGLEYLHSNGII-HRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA---RNTMVGTPYWMAPEVINGKPY-  174 (253)
T ss_pred             HHHHHHHHHHHHHHhhcCCEe-cCCCCHHHEEEccCCeEEEeecccccccccccc---ccceecCCcccCHHHHcCCCC-
Confidence            578999999999999999987 999999999999999999999999876543321   234567788999999887654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCC-CCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS-SLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~-~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|+||||++++++++|+.||....  ..+........  ..+... ...++..+.+++.+||+.||++|||+.++
T Consensus       175 --~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~  248 (253)
T cd05122         175 --DYKADIWSLGITAIELAEGKPPYSELP--PMKALFKIATN--GPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQL  248 (253)
T ss_pred             --CccccHHHHHHHHHHHHhCCCCCCCCc--hHHHHHHHHhc--CCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHH
Confidence              889999999999999999999997432  22223232221  111111 22347899999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       249 l~  250 (253)
T cd05122         249 LK  250 (253)
T ss_pred             hc
Confidence            75

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.89  E-value=9.6e-23  Score=194.49  Aligned_cols=149  Identities=14%  Similarity=0.201  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|+++|+.|||+.|++ ||||||+||+++.++ .++|+|||++......      ....++..|+|||.+.+..+
T Consensus       111 ~~~~~~qi~~~l~~lH~~~i~-H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~  183 (267)
T PHA03390        111 VKKIIRQLVEALNDLHKHNII-HNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP------SCYDGTLDYFSPEKIKGHNY  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-eCCCCHHHEEEeCCCCeEEEecCccceecCCC------ccCCCCCcccChhhhcCCCC
Confidence            578999999999999999987 999999999999998 9999999997654322      23357788999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-HHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-LRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-~~~  182 (423)
                         +.++||||||+++||+++|..||.......-. ...+.......+ .....+++.+.+++.+||+.+|.+||+ +++
T Consensus       184 ---~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~  258 (267)
T PHA03390        184 ---DVSFDWWAVGVLTYELLTGKHPFKEDEDEELD-LESLLKRQQKKL-PFIKNVSKNANDFVQSMLKYNINYRLTNYNE  258 (267)
T ss_pred             ---CchhhHHHHHHHHHHHHHCCCCCCCCCcchhh-HHHHHHhhcccC-CcccccCHHHHHHHHHHhccChhhCCchHHH
Confidence               78999999999999999999999743221111 111111111111 122357899999999999999999995 688


Q ss_pred             HHH
Q psy1840         183 VHH  185 (423)
Q Consensus       183 I~~  185 (423)
                      +++
T Consensus       259 ~l~  261 (267)
T PHA03390        259 IIK  261 (267)
T ss_pred             Hhc
Confidence            764

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.89  E-value=1e-22  Score=195.29  Aligned_cols=156  Identities=18%  Similarity=0.259  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.+++ ||||+|+||+++.++.+||+|||++........ .......++..|+|||.+.+.. 
T Consensus       101 ~~~~~~~~i~~~l~~LH~~~i~-H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~~PE~~~~~~-  177 (288)
T cd07833         101 AVRSYIWQLLQAIAYCHSHNII-HRDIKPENILVSESGVLKLCDFGFARALRARPA-SPLTDYVATRWYRAPELLVGDT-  177 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCCHHHeEECCCCCEEEEeeecccccCCCcc-ccccCcccccCCcCCchhcCCC-
Confidence            3578999999999999999987 999999999999999999999999876543322 1123345678899999998762 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC---------------C---C-CCCC---------CCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG---------------S---G-LRPD---------TSS  155 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~---------------~---~-~~p~---------~~~  155 (423)
                       ..+.++||||||+++|++++|..||.....  .+....+...               .   . ..+.         ...
T Consensus       178 -~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (288)
T cd07833         178 -NYGKPVDVWAIGCIMAELLDGEPLFPGDSD--IDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYP  254 (288)
T ss_pred             -CcCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcC
Confidence             238899999999999999999999964321  1111111100               0   0 0000         011


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..++.++.+++++||..+|++||++.++++
T Consensus       255 ~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         255 GKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             CccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            234788999999999999999999998865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.89  E-value=9.7e-23  Score=191.99  Aligned_cols=151  Identities=21%  Similarity=0.371  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.|++ ||||+|+||+++.++.+||+|||++.......   ......++..|+|||.+....  
T Consensus       104 ~~~~~~~i~~~l~~lH~~~i~-H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~---~~~~~~~~~~y~~pe~~~~~~--  177 (258)
T cd06632         104 IRLYTRQILLGLEYLHDRNTV-HRDIKGANILVDTNGVVKLADFGMAKQVVEFS---FAKSFKGSPYWMAPEVIAQQG--  177 (258)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCCEEEccCccceeccccc---cccccCCCcceeCHHHhcCCC--
Confidence            568899999999999999998 99999999999999999999999977643322   123455778899999987654  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      ..+.++|+||||+++|++++|+.||....  ..+....+.... ..+.. ...+++.+.+++.+||+.+|++||++.+++
T Consensus       178 ~~~~~~D~~slG~~l~~l~~g~~pf~~~~--~~~~~~~~~~~~-~~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  253 (258)
T cd06632         178 GYGLAADIWSLGCTVLEMATGKPPWSQLE--GVAAVFKIGRSK-ELPPI-PDHLSDEAKDFILKCLQRDPSLRPTAAELL  253 (258)
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCcccCc--HHHHHHHHHhcc-cCCCc-CCCcCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence            23889999999999999999999997532  222222322211 12222 235789999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      .
T Consensus       254 ~  254 (258)
T cd06632         254 E  254 (258)
T ss_pred             c
Confidence            5

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.89  E-value=6.7e-23  Score=196.43  Aligned_cols=155  Identities=19%  Similarity=0.193  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.+++ ||||+|+||+++.++.++|+|||++.........  .....++..|+|||.+.+..  
T Consensus       101 ~~~~~~~i~~~L~~lH~~~~~-H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~--  175 (283)
T cd07835         101 IKSYLYQLLQGIAYCHSHRVL-HRDLKPQNLLIDREGALKLADFGLARAFGVPVRT--YTHEVVTLWYRAPEILLGSR--  175 (283)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-CCCCCHHHEEEcCCCcEEEeecccccccCCCccc--cCccccccCCCCCceeecCc--
Confidence            689999999999999999988 9999999999999999999999998654322111  12234577899999886543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc------------------------CCCCCCCCCCCCchH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ------------------------GSGLRPDTSSLDCAP  160 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~------------------------~~~~~p~~~~~~~~~  160 (423)
                      ..+.++|+||||+++|+|++|+.||..... ..++......                        .....+.......+.
T Consensus       176 ~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T cd07835         176 QYSTPVDIWSIGCIFAEMVNRRPLFPGDSE-IDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDE  254 (283)
T ss_pred             ccCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCH
Confidence            237899999999999999999999964321 1111111110                        000001111235678


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .+.+++.+||+.+|.+||++.+++.
T Consensus       255 ~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         255 DGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHhc
Confidence            8999999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0032|consensus

Probab=99.89  E-value=1.1e-22  Score=202.39  Aligned_cols=153  Identities=23%  Similarity=0.287  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC----ccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR----WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~----~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.|++.++.|||+.|++ ||||||+|+|+...    +.+|++|||++.....   .......+||+.|+|||++..
T Consensus       137 a~~~~~~il~av~~lH~~gvv-HrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~---~~~~~~~~Gtp~y~APEvl~~  212 (382)
T KOG0032|consen  137 AAGIIRQILEAVKYLHSLGVV-HRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP---GERLHTIVGTPEYVAPEVLGG  212 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCCce-eccCCHHHeeeccccCCCCcEEEeeCCCceEccC---CceEeeecCCccccCchhhcC
Confidence            578999999999999999998 99999999999643    5799999999987654   223457789999999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+   +..+||||+|+++|.|++|..||.+  .+..+....+..+....+......++..+.+++..|+..||..|+|+
T Consensus       213 ~~y---~~~~DiWS~Gvi~yiLL~G~~PF~~--~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta  287 (382)
T KOG0032|consen  213 RPY---GDEVDVWSIGVILYILLSGVPPFWG--ETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTA  287 (382)
T ss_pred             CCC---CcccchhHHHHHHHHHhhCCCCCcC--CChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCH
Confidence            665   9999999999999999999999974  44456666888887766666677889999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       288 ~~~L~H  293 (382)
T KOG0032|consen  288 AQALQH  293 (382)
T ss_pred             HHHhcC
Confidence            999885

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.89  E-value=1.2e-22  Score=194.64  Aligned_cols=152  Identities=20%  Similarity=0.253  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ |+||+|+||+++.++.+||+|||++........   .....++..|+|||.+.+... 
T Consensus       109 ~~~~~~~i~~al~~LH~~~i~-h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~PE~~~~~~~-  183 (287)
T cd07838         109 IKDLMRQLLRGVDFLHSHRIV-HRDLKPQNILVTSDGQVKIADFGLARIYSFEMA---LTSVVVTLWYRAPEVLLQSSY-  183 (287)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eccCChhhEEEccCCCEEEeccCcceeccCCcc---cccccccccccChHHhccCCC-
Confidence            689999999999999999987 999999999999999999999999876532221   123346778999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC----------------CCCC-------CCCCCchHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG----------------LRPD-------TSSLDCAPS  161 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~----------------~~p~-------~~~~~~~~~  161 (423)
                        +.++|+|||||++|||++|..||...  +..+....+.....                ..+.       ......++.
T Consensus       184 --~~~~Di~s~G~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (287)
T cd07838         184 --ATPVDMWSVGCIFAELFRRRPLFRGT--SEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEE  259 (287)
T ss_pred             --CCcchhhhHHHHHHHHHhCCCcccCC--ChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHH
Confidence              88999999999999999999998643  23333333221000                0000       001134577


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         162 IIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       162 l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +.+++.+||+.||.+||++.+++.
T Consensus       260 ~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         260 GLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             HHHHHHHHhccCCccCCCHHHHhc
Confidence            889999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.89  E-value=1.4e-22  Score=194.87  Aligned_cols=153  Identities=21%  Similarity=0.351  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ |+||+|+||+++.++.++|+|||++........  ......++..|+|||.+.+..+ 
T Consensus       118 ~~~i~~~i~~~L~~lH~~gi~-H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~-  193 (286)
T cd06614         118 IAYVCREVLQGLEYLHSQNVI-HRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS--KRNSVVGTPYWMAPEVIKRKDY-  193 (286)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-eCCCChhhEEEcCCCCEEECccchhhhhccchh--hhccccCCcccCCHhHhcCCCC-
Confidence            678999999999999999998 999999999999999999999998765432211  1123456778999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|++++|..||...  ........+..... .+......++..+.+++.+||+.+|.+||++.+|+
T Consensus       194 --~~~~Dv~slGvil~~l~~g~~p~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il  268 (286)
T cd06614         194 --GPKVDIWSLGIMCIEMAEGEPPYLRE--PPLRALFLITTKGI-PPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELL  268 (286)
T ss_pred             --CCccccHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhcCC-CCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHh
Confidence              88999999999999999999999642  33333333332221 11112234788999999999999999999999997


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      ..
T Consensus       269 ~~  270 (286)
T cd06614         269 QH  270 (286)
T ss_pred             hC
Confidence            63

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.89  E-value=9.9e-23  Score=195.34  Aligned_cols=155  Identities=17%  Similarity=0.174  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||+|||+.+++ ||||+|+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       102 ~~~~~~~i~~~l~~lh~~~i~-H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~--  176 (284)
T cd07860         102 IKSYLFQLLQGLAFCHSHRVL-HRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRAPEILLGCK--  176 (284)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEECCCCCEEEeeccchhhcccCcc--ccccccccccccCCeEEecCC--
Confidence            578999999999999999988 999999999999999999999999765432211  112234577899999887643  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-----------------CCCC-------CCCCCchH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-----------------LRPD-------TSSLDCAP  160 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-----------------~~p~-------~~~~~~~~  160 (423)
                      ..+.++||||||+++|||++|+.||..... .......+.....                 ..+.       .....+++
T Consensus       177 ~~~~~~Dv~slG~il~~l~tg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (284)
T cd07860         177 YYSTAVDIWSLGCIFAEMVTRRALFPGDSE-IDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDE  255 (284)
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCH
Confidence            237889999999999999999999964321 1222211111000                 0000       00123577


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++.+++.+||+.||.+||++.+++.
T Consensus       256 ~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         256 DGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             HHHHHHHHhcCCCcccCCCHHHHhc
Confidence            8999999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.89  E-value=1.6e-22  Score=194.63  Aligned_cols=154  Identities=21%  Similarity=0.358  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||+|.||+++.++.++|+|||++........    ....++..|+|||.+.+..+ 
T Consensus       107 ~~~i~~~i~~~L~~lH~~~i~-H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~y~~pE~~~~~~~-  180 (287)
T cd06621         107 LGKIAESVLKGLSYLHSRKII-HRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA----GTFTGTSFYMAPERIQGKPY-  180 (287)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEEecCCeEEEeecccccccccccc----ccccCCccccCHHHhcCCCC-
Confidence            568999999999999999998 999999999999999999999999765432211    23456778999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC---CChHHHHHHHhcCCCCC-CCCC--CCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR---MTDEEIITSVTQGSGLR-PDTS--SLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~---~~~~~i~~~i~~~~~~~-p~~~--~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                        +.++||||||+++|+|++|..||....   ....+....+....... +...  ....++.+.+++.+||..+|++||
T Consensus       181 --~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  258 (287)
T cd06621         181 --SITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRP  258 (287)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCC
Confidence              889999999999999999999997542   23344444444322111 1111  124578899999999999999999


Q ss_pred             CHHHHHHH
Q psy1840         179 DLRFVHHK  186 (423)
Q Consensus       179 t~~~I~~~  186 (423)
                      |+.+++..
T Consensus       259 t~~eil~~  266 (287)
T cd06621         259 TPWDMLEH  266 (287)
T ss_pred             CHHHHHhC
Confidence            99999874

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.89  E-value=1.3e-22  Score=199.25  Aligned_cols=158  Identities=15%  Similarity=0.256  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-----cccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.|++.||.|||+++++ ||||||+||+++.++.++++|||...........     .......++..|+|||.+.
T Consensus       103 ~~~i~~qi~~~L~~LH~~~ii-H~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  181 (327)
T cd08227         103 IAYILQGVLKALDYIHHMGYV-HRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQ  181 (327)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-cCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhh
Confidence            578999999999999999988 9999999999999999999999864432211110     0011234566799999987


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC-C------------------------------
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS-G------------------------------  148 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~-~------------------------------  148 (423)
                      +... .++.++|||||||++|||++|..||.....  .........+. +                              
T Consensus       182 ~~~~-~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (327)
T cd08227         182 QNLQ-GYDAKSDIYSVGITACELANGHVPFKDMPA--TQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGEST  258 (327)
T ss_pred             cccC-CCCchhhHHHHHHHHHHHHHCCCCCCCcch--hHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCccc
Confidence            6321 248899999999999999999999974321  11111111100 0                              


Q ss_pred             ----CCCC-------CCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         149 ----LRPD-------TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       149 ----~~p~-------~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                          .++.       .....+++.+.+++.+||+.||++|||+.++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~  307 (327)
T cd08227         259 TVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  307 (327)
T ss_pred             ccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcC
Confidence                0000       0012346789999999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.89  E-value=1.5e-22  Score=194.99  Aligned_cols=156  Identities=20%  Similarity=0.207  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ |+||||+||+++.++.+||+|||+++........  .....++..|+|||.+.+..  
T Consensus       105 ~~~~~~qi~~~L~~lH~~~i~-H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~--  179 (291)
T cd07870         105 VRLFMFQLLRGLAYIHGQHIL-HRDLKPQNLLISYLGELKLADFGLARAKSIPSQT--YSSEVVTLWYRPPDVLLGAT--  179 (291)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCChHHEEEcCCCcEEEeccccccccCCCCCC--CCCccccccccCCceeecCC--
Confidence            567899999999999999988 9999999999999999999999998654322111  12334678899999987532  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc-C-------------CCCC--------CCC-----CCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ-G-------------SGLR--------PDT-----SSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~-~-------------~~~~--------p~~-----~~~~  157 (423)
                      ..+.++||||||+++|||++|..||.......+.+...... +             ....        +..     ....
T Consensus       180 ~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (291)
T cd07870         180 DYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLS  259 (291)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccC
Confidence            23778999999999999999999997543221222111110 0             0000        000     0112


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .+..+.+++.+|+..||.+|||+.+++.
T Consensus       260 ~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         260 RPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             CChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence            3578899999999999999999998864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.89  E-value=1e-22  Score=195.31  Aligned_cols=154  Identities=19%  Similarity=0.291  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||++++++.++|+|||++........  ......++..|+|||.+.+..  
T Consensus       102 ~~~~~~~i~~~l~~LH~~~i~-h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~--  176 (286)
T cd07846         102 VRKYLFQILRGIEFCHSHNII-HRDIKPENILVSQSGVVKLCDFGFARTLAAPGE--VYTDYVATRWYRAPELLVGDT--  176 (286)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCCHHHEEECCCCcEEEEeeeeeeeccCCcc--ccCcccceeeccCcHHhcccc--
Confidence            688999999999999999988 999999999999999999999999876533221  112345678899999986533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-------------------CCCCCCC--------CCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-------------------SGLRPDT--------SSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-------------------~~~~p~~--------~~~~  157 (423)
                      ..+.++||||||+++|||++|..||....  ..+....+...                   ....+..        ....
T Consensus       177 ~~~~~~Dv~slG~~l~el~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (286)
T cd07846         177 KYGRAVDIWAVGCLVTEMLTGEPLFPGDS--DIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPK  254 (286)
T ss_pred             ccCchHhHHHHHHHHHHHHcCCCCCCCCc--hHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCC
Confidence            23788999999999999999999986432  11111111100                   0000100        0124


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++..+.+++.+||+.+|++||++.+|++
T Consensus       255 ~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         255 LSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             cCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            6788999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.89  E-value=1.2e-22  Score=195.74  Aligned_cols=154  Identities=20%  Similarity=0.251  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++. ++.+||+|||++........  ......+++.|+|||.+.+.. 
T Consensus       112 ~~~~~~qi~~~L~~LH~~~i~-H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~-  187 (295)
T cd07837         112 IKSFMYQLLKGVAHCHKHGVM-HRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVK--SYTHEIVTLWYRAPEVLLGST-  187 (295)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCCChHHEEEecCCCeEEEeecccceecCCCcc--ccCCcccccCCCChHHhhCCC-
Confidence            678999999999999999998 9999999999998 89999999999875432211  112234567899999886532 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC----C-----------------CCCC---CCCCCCch
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG----S-----------------GLRP---DTSSLDCA  159 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~----~-----------------~~~p---~~~~~~~~  159 (423)
                       ..+.++|+||||+++|+|++|..||....  ..+....+...    .                 ...+   ......++
T Consensus       188 -~~~~~~Di~slG~~l~~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (295)
T cd07837         188 -HYSTPVDIWSVGCIFAEMSRKQPLFPGDS--ELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLS  264 (295)
T ss_pred             -CCCchHHHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccC
Confidence             23789999999999999999999996432  22211111110    0                 0000   00112467


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .++.+++.+||..||.+||++.+++.
T Consensus       265 ~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         265 PEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             HHHHHHHHHHccCChhhcCCHHHHhc
Confidence            88999999999999999999998875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.89  E-value=1.3e-22  Score=195.70  Aligned_cols=154  Identities=23%  Similarity=0.291  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+++++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       108 ~~~i~~qi~~aL~~LH~~~i~-H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~--  182 (293)
T cd07843         108 VKCLMLQLLSGVAHLHDNWIL-HRDLKTSNLLLNNRGILKICDFGLAREYGSPLK--PYTQLVVTLWYRAPELLLGAK--  182 (293)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eccCCHHHEEECCCCcEEEeecCceeeccCCcc--ccccccccccccCchhhcCCc--
Confidence            679999999999999999988 999999999999999999999999875543211  112345677899999987643  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC----------------------------CCCCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS----------------------------GLRPDTSSL  156 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~----------------------------~~~p~~~~~  156 (423)
                      ..+.++|+||||+++|||++|..||....  ..+....+....                            ......+..
T Consensus       183 ~~~~~~Di~slG~~l~~l~~g~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (293)
T cd07843         183 EYSTAIDMWSVGCIFAELLTKKPLFPGKS--EIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPAL  260 (293)
T ss_pred             cccchhhHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhcccccc
Confidence            23789999999999999999999996432  222222221100                            000011111


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..++.+.+++++||+.+|++|||+.+++.
T Consensus       261 ~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         261 SLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             CCChHHHHHHHHHhccCccccCCHHHHhc
Confidence            14788999999999999999999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.89  E-value=1.9e-22  Score=190.68  Aligned_cols=155  Identities=23%  Similarity=0.360  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.|++.|+.|||+ .+++ ||||+|+||+++.++.++|+|||.+.........  .....++..|+|||.+.+..
T Consensus       100 ~~~~~~~~l~~~l~~lh~~~~~~-H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~y~~pE~~~~~~  176 (264)
T cd06623         100 VLAYIARQILKGLDYLHTKRHII-HRDIKPSNLLINSKGEVKIADFGISKVLENTLDQ--CNTFVGTVTYMSPERIQGES  176 (264)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCc-cCCCCHHHEEECCCCCEEEccCccceecccCCCc--ccceeecccccCHhhhCCCC
Confidence            368999999999999999 9998 9999999999999999999999998755322221  12345677899999987764


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .   +.++|+||||+++|++++|..||..... ...+....+....  .+......++..+.+++.+||..+|++||++.
T Consensus       177 ~---~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~  251 (264)
T cd06623         177 Y---SYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGP--PPSLPAEEFSPEFRDFISACLQKDPKKRPSAA  251 (264)
T ss_pred             C---CchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCC--CCCCCcccCCHHHHHHHHHHccCChhhCCCHH
Confidence            4   8899999999999999999999975431 3344555544321  22222222789999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       252 ~ll~~  256 (264)
T cd06623         252 ELLQH  256 (264)
T ss_pred             HHHhC
Confidence            99764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.89  E-value=1.3e-22  Score=194.13  Aligned_cols=155  Identities=23%  Similarity=0.257  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||+|||+.|++ |+||+|+||++++++.+||+|||++......... ......++..|+|||.+.+..  
T Consensus       102 ~~~i~~~i~~al~~LH~~~~~-h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~--  177 (287)
T cd07840         102 IKCYMKQLLEGLQYLHSNGIL-HRDIKGSNILINNDGVLKLADFGLARPYTKRNSA-DYTNRVITLWYRPPELLLGAT--  177 (287)
T ss_pred             HHHHHHHHHHHHHHHHHCCce-eccCcHHHeEEcCCCCEEEccccceeeccCCCcc-cccccccccccCCceeeEccc--
Confidence            579999999999999999988 9999999999999999999999998765433211 112334567899999876543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-----CCCC----------------------CCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-----LRPD----------------------TSSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-----~~p~----------------------~~~~~  157 (423)
                      ..+.++||||||+++|||++|..||....  .......+.....     ..+.                      .....
T Consensus       178 ~~~~~~Dv~slG~~l~el~t~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (287)
T cd07840         178 RYGPEVDMWSVGCILAELFLGKPIFQGST--ELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHL  255 (287)
T ss_pred             cCChHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhccc
Confidence            23789999999999999999999996432  2222222211000     0000                      00111


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++..+.+++.+||+.+|++||++.++++
T Consensus       256 ~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         256 IDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            3788999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.88  E-value=5.2e-23  Score=202.90  Aligned_cols=159  Identities=18%  Similarity=0.306  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+.. 
T Consensus       108 ~~~i~~ql~~aL~~LH~~~iv-H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  185 (336)
T cd07849         108 IQYFLYQILRGLKYIHSANVL-HRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSK-  185 (336)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCC-
Confidence            467899999999999999988 9999999999999999999999998754322211 1122346788899999875532 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-------------HHHHHHHhc--------CCCCCCCCC----CCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-------------EEIITSVTQ--------GSGLRPDTS----SLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-------------~~i~~~i~~--------~~~~~p~~~----~~~~  158 (423)
                       ..+.++|||||||++|+|++|+.||.......             .+....+..        ..+..+...    ....
T Consensus       186 -~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (336)
T cd07849         186 -GYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNA  264 (336)
T ss_pred             -CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhccc
Confidence             23789999999999999999999996432100             000110000        000001000    1234


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +.++.+++.+||+.+|++|||+.++++.
T Consensus       265 ~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         265 DPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             CcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            6789999999999999999999998765

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0584|consensus

Probab=99.88  E-value=3.6e-23  Score=208.09  Aligned_cols=149  Identities=21%  Similarity=0.355  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          26 ISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      -+|+.||++||.|||++ +.|+|||||-.||+|+. -|.|||+|+|+|........    ....|||.|||||+.-. .|
T Consensus       146 k~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~a----ksvIGTPEFMAPEmYEE-~Y  220 (632)
T KOG0584|consen  146 KSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHA----KSVIGTPEFMAPEMYEE-NY  220 (632)
T ss_pred             HHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhcccc----ceeccCccccChHHHhh-hc
Confidence            48999999999999997 44559999999999975 58999999999987643322    34789999999999874 34


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +..+||||||++++||+|+..||.. ...+.+|..++..|.  .|.....--.++++++|.+|+.. ...||++.++
T Consensus       221 ---nE~VDVYaFGMCmLEMvT~eYPYsE-C~n~AQIYKKV~SGi--KP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eL  293 (632)
T KOG0584|consen  221 ---NELVDVYAFGMCMLEMVTSEYPYSE-CTNPAQIYKKVTSGI--KPAALSKVKDPEVREFIEKCLAT-KSERLSAKEL  293 (632)
T ss_pred             ---chhhhhhhhhHHHHHHHhccCChhh-hCCHHHHHHHHHcCC--CHHHhhccCCHHHHHHHHHHhcC-chhccCHHHH
Confidence               8999999999999999999999975 567889999998874  33333323478999999999999 9999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      +..
T Consensus       294 L~d  296 (632)
T KOG0584|consen  294 LKD  296 (632)
T ss_pred             hhC
Confidence            763

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.88  E-value=1.9e-22  Score=194.41  Aligned_cols=146  Identities=21%  Similarity=0.297  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||+|+||+++.++.+||+|||++......     .....+++.|+|||.+.+... 
T Consensus       103 ~~~~~~qil~~l~~lH~~~i~-H~dl~p~nili~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~-  175 (290)
T cd05580         103 ARFYAAQVVLALEYLHSLDIV-YRDLKPENLLLDSDGYIKITDFGFAKRVKGR-----TYTLCGTPEYLAPEIILSKGY-  175 (290)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-cCCCCHHHEEECCCCCEEEeeCCCccccCCC-----CCCCCCCccccChhhhcCCCC-
Confidence            568899999999999999998 9999999999999999999999998765433     234467888999999876544 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++||||||+++|+|++|..||....  ..+....+..+....|    ...+..+.+++.+||..||.+|+     +
T Consensus       176 --~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~~p~~R~~~~~~~  247 (290)
T cd05580         176 --GKAVDWWALGILIYEMLAGYPPFFDDN--PIQIYEKILEGKVRFP----SFFSPDAKDLIRNLLQVDLTKRLGNLKNG  247 (290)
T ss_pred             --CccccHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHhcCCccCC----ccCCHHHHHHHHHHccCCHHHccCcccCC
Confidence              789999999999999999999997432  4445555554433222    24578999999999999999998     6


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.+++.
T Consensus       248 ~~~l~~  253 (290)
T cd05580         248 VNDIKN  253 (290)
T ss_pred             HHHHHc
Confidence            666653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.88  E-value=2e-22  Score=193.40  Aligned_cols=150  Identities=19%  Similarity=0.275  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ ||||||+||+++.++.+||+|||++.......    .....|+..|+|||.+.++.  
T Consensus        99 ~~~~~~ql~~~l~~lH~~~i~-H~di~p~nili~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~--  171 (278)
T cd05606          99 MRFYAAEIILGLEHMHNRFVV-YRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVLQKGV--  171 (278)
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-cCCCCHHHEEECCCCCEEEccCcCccccCccC----CcCcCCCcCCcCcHHhcCCC--
Confidence            678999999999999999987 99999999999999999999999976543221    12346788999999987542  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-HHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-EEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----  178 (423)
                      .++.++||||+|+++|||++|..||....... ..+.......   .+.. +..++.++.+++.+||..+|.+||     
T Consensus       172 ~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~-~~~~s~~~~~li~~~l~~~p~~R~~~~~~  247 (278)
T cd05606         172 AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM---AVEL-PDSFSPELRSLLEGLLQRDVNRRLGCLGR  247 (278)
T ss_pred             CCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhcc---CCCC-CCcCCHHHHHHHHHHhhcCHHhccCCCCC
Confidence            23789999999999999999999997542222 2222222221   1222 224688999999999999999999     


Q ss_pred             CHHHHHH
Q psy1840         179 DLRFVHH  185 (423)
Q Consensus       179 t~~~I~~  185 (423)
                      ++.++++
T Consensus       248 ~~~~ll~  254 (278)
T cd05606         248 GAQEVKE  254 (278)
T ss_pred             CHHHHHh
Confidence            8888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.88  E-value=2.1e-22  Score=188.87  Aligned_cols=154  Identities=21%  Similarity=0.387  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ ||||+|+||+++.++.++|+|||.+................++..|+|||.+.+... 
T Consensus       103 ~~~~~~~l~~~l~~lh~~~~~-h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~-  180 (260)
T cd06606         103 IRKYTRQILEGLAYLHSNGIV-HRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEY-  180 (260)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCC-
Confidence            679999999999999999988 999999999999999999999999876544332111234567788999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||++++++++|..||.... ........+.... ..+. .+...+..+.+++.+||+.+|++||++.+++
T Consensus       181 --~~~~Dv~slG~il~~l~~g~~p~~~~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll  255 (260)
T cd06606         181 --GRAADIWSLGCTVIEMATGKPPWSELG-NPMAALYKIGSSG-EPPE-IPEHLSEEAKDFLRKCLRRDPKKRPTADELL  255 (260)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCCC-chHHHHHhccccC-CCcC-CCcccCHHHHHHHHHhCcCChhhCCCHHHHh
Confidence              899999999999999999999997544 2233333333211 1122 2235688999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      .
T Consensus       256 ~  256 (260)
T cd06606         256 Q  256 (260)
T ss_pred             h
Confidence            5

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.88  E-value=1.2e-22  Score=194.44  Aligned_cols=150  Identities=23%  Similarity=0.328  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.|++ ||||+|+||+++.++.+||+|||++.......   ......++..|+|||.+.+..+ 
T Consensus        97 ~~~~~~ql~~~l~~lH~~~i~-H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~y~~PE~~~~~~~-  171 (277)
T cd05577          97 AIFYAAQIICGLEHLHQRRIV-YRDLKPENVLLDDHGNVRISDLGLAVELKGGK---KIKGRAGTPGYMAPEVLQGEVY-  171 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEEECCCCCEEEccCcchhhhccCC---ccccccCCCCcCCHHHhcCCCC-
Confidence            577899999999999999998 99999999999999999999999986543211   1123456778999999877654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCC--ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRM--TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP----  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~--~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP----  178 (423)
                        +.++||||||+++|++++|+.||.....  ...++...+..    .+......+++.+.+++.+||+.+|++||    
T Consensus       172 --~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         172 --DFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLE----MAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             --CchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhcccc----ccccCCccCCHHHHHHHHHHccCChhHccCCCc
Confidence              8899999999999999999999965432  22233222222    12222235688999999999999999999    


Q ss_pred             -CHHHHHH
Q psy1840         179 -DLRFVHH  185 (423)
Q Consensus       179 -t~~~I~~  185 (423)
                       ++.+++.
T Consensus       246 ~~~~~ll~  253 (277)
T cd05577         246 GSADEVRE  253 (277)
T ss_pred             ccHHHHHh
Confidence             5555543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.88  E-value=1.4e-22  Score=197.16  Aligned_cols=155  Identities=23%  Similarity=0.210  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.|++ ||||||+||+++.++.+||+|||++.........  .....++..|+|||.+.+..  
T Consensus       110 ~~~~~~qi~~~l~~lH~~~i~-H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~--  184 (309)
T cd07845         110 VKCLMLQLLRGLQYLHENFII-HRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKP--MTPKVVTLWYRAPELLLGCT--  184 (309)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEECCCCCEEECccceeeecCCccCC--CCcccccccccChhhhcCCC--
Confidence            578999999999999999988 9999999999999999999999998765432111  12223467799999987533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC-------------------CCCCC-------CCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-------------------RPDTS-------SLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~-------------------~p~~~-------~~~~  158 (423)
                      ..+.++|||||||++|||++|..||..  .+..+....+......                   .+...       ....
T Consensus       185 ~~~~~~DvwslG~il~el~~g~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (309)
T cd07845         185 TYTTAIDMWAVGCILAELLAHKPLLPG--KSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWL  262 (309)
T ss_pred             CcCchHHHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhcccc
Confidence            237899999999999999999999974  3334444333321000                   00000       0124


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++++.++|.+||+.||++|||+.+++..
T Consensus       263 ~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         263 SEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             CHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            7788999999999999999999998864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.88  E-value=1.3e-22  Score=219.45  Aligned_cols=151  Identities=17%  Similarity=0.297  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHhCC-------CeeecCCCCCCEEEcC-----------------CccEEEeccCCcccccCCCcc
Q psy1840          25 SISVNTTASVGMIHLHDSE-------IISHGNLRSSNCLIDS-----------------RWVLQIADFGLHAFKAGQDET   80 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~-------ii~HrDLkp~NILld~-----------------~~~vKL~DFGla~~~~~~~~~   80 (423)
                      .+.|+.||+.||.|||+.+       |+ ||||||+||||+.                 .+.+||+|||++.......  
T Consensus       120 Il~Ia~QIL~ALaYLHs~g~~~~~k~IV-HRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s--  196 (1021)
T PTZ00266        120 IVDITRQLLHALAYCHNLKDGPNGERVL-HRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIES--  196 (1021)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCce-eccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccc--
Confidence            5789999999999999854       66 9999999999964                 3459999999987543221  


Q ss_pred             cccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchH
Q psy1840          81 GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAP  160 (423)
Q Consensus        81 ~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~  160 (423)
                       ......+++.|+|||++.+... .++.++||||||||+|||++|..||... .....++..+..+.    ..+....+.
T Consensus       197 -~~~s~vGTp~YmAPEvL~ge~~-~~s~KSDVWSLG~ILYELLTGk~PF~~~-~~~~qli~~lk~~p----~lpi~~~S~  269 (1021)
T PTZ00266        197 -MAHSCVGTPYYWSPELLLHETK-SYDDKSDMWALGCIIYELCSGKTPFHKA-NNFSQLISELKRGP----DLPIKGKSK  269 (1021)
T ss_pred             -cccccCCCccccCHHHHhccCC-CCCchhHHHHHHHHHHHHHHCCCCCCcC-CcHHHHHHHHhcCC----CCCcCCCCH
Confidence             1234568999999999865321 2488999999999999999999999643 23344555544432    222235688


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++.+||..||+.+|.+||++.+++.
T Consensus       270 eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        270 ELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             HHHHHHHHHhcCChhHCcCHHHHhc
Confidence            9999999999999999999999984

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.88  E-value=1.8e-22  Score=191.72  Aligned_cols=152  Identities=17%  Similarity=0.289  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .++++.|++.||.|||+++++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+...
T Consensus       108 ~~~~~~~l~~~l~~lH~~~i~-H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  186 (265)
T cd06652         108 TRKYTRQILEGVSYLHSNMIV-HRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGY  186 (265)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCC
Confidence            578999999999999999987 9999999999999999999999998754322111 11223457788999999876554


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++||+++|+.||...  .....+...... ...+.. +...+..+.+++.+||. +|++||++.+|
T Consensus       187 ---~~~~Dv~slG~il~el~~g~~p~~~~--~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~i~~~l~-~p~~Rp~~~~i  258 (265)
T cd06652         187 ---GRKADIWSVGCTVVEMLTEKPPWAEF--EAMAAIFKIATQ-PTNPVL-PPHVSDHCRDFLKRIFV-EAKLRPSADEL  258 (265)
T ss_pred             ---CcchhHHHHHHHHHHHhhCCCCCCcc--chHHHHHHHhcC-CCCCCC-chhhCHHHHHHHHHHhc-ChhhCCCHHHH
Confidence               88999999999999999999999643  222222333221 122222 23456788999999995 99999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       259 l~  260 (265)
T cd06652         259 LR  260 (265)
T ss_pred             hc
Confidence            75

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.88  E-value=2.2e-22  Score=196.03  Aligned_cols=159  Identities=14%  Similarity=0.223  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-----ccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-----TGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-----~~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.|++.||+|||+++++ ||||||+||+++.++.+||+|||.+........     ........++..|+|||.+.
T Consensus       103 ~~~~~~~l~~~L~~LH~~~iv-H~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  181 (314)
T cd08216         103 IAFILKDVLNALDYIHSKGFI-HRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQ  181 (314)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhc
Confidence            467899999999999999988 999999999999999999999998764432211     11112334667799999987


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC-----------------------------C
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-----------------------------R  150 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~-----------------------------~  150 (423)
                      .... .++.++|+|||||++|||++|..||..... .....+.+......                             .
T Consensus       182 ~~~~-~~~~~~Diws~G~il~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (314)
T cd08216         182 QNLQ-GYNEKSDIYSVGITACELANGHVPFKDMPA-TQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSV  259 (314)
T ss_pred             CCCC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhh
Confidence            6421 247899999999999999999999975321 22222222211000                             0


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       151 p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +.......+.++.+++.+||..||++|||+.++++.
T Consensus       260 ~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         260 DHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             hcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence            000011234678899999999999999999999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.88  E-value=1.8e-22  Score=195.69  Aligned_cols=158  Identities=19%  Similarity=0.224  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||++|++ |+||||+||+++.++.+||+|||++.........  .......++..|+|||.+.+..
T Consensus       121 ~~~i~~qi~~al~~lH~~~i~-H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  199 (310)
T cd07865         121 IKKVMKMLLNGLYYIHRNKIL-HRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGER  199 (310)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCc
Confidence            578999999999999999988 9999999999999999999999998755332211  1112334677899999886543


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC-hHHHHHHHhcCCC--C--------------CCC---------CCCC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-DEEIITSVTQGSG--L--------------RPD---------TSSL  156 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-~~~i~~~i~~~~~--~--------------~p~---------~~~~  156 (423)
                        ..+.++||||||+++|||++|..||...... ....+..+....+  .              .+.         ....
T Consensus       200 --~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  277 (310)
T cd07865         200 --DYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPY  277 (310)
T ss_pred             --ccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccc
Confidence              2378999999999999999999998643211 0111122111000  0              000         0011


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..+..+.+++.+||..||++|||+.++++
T Consensus       278 ~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         278 VKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             cCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence            23467789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.88  E-value=3e-22  Score=188.43  Aligned_cols=148  Identities=22%  Similarity=0.365  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||+|.||+++.++.+||+|||++......    ......++..|+|||.+.+..+ 
T Consensus       105 ~~~~~~~l~~al~~lh~~~i~-h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~~-  178 (256)
T cd08530         105 IWRIFIQLLRGLQALHEQKIL-HRDLKSANILLVANDLVKIGDLGISKVLKKN----MAKTQIGTPHYMAPEVWKGRPY-  178 (256)
T ss_pred             HHHHHHHHHHHHHHHhhCCcc-cCCCCcceEEEecCCcEEEeeccchhhhccC----CcccccCCccccCHHHHCCCCC-
Confidence            568999999999999999998 9999999999999999999999998765433    1123456788999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|++++|..||...  +..++...+..+.  .+... ..++.++.+++.+||+.+|++||++.+++
T Consensus       179 --~~~~D~~slG~~~~~l~~g~~p~~~~--~~~~~~~~~~~~~--~~~~~-~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  251 (256)
T cd08530         179 --SYKSDIWSLGCLLYEMATFAPPFEAR--SMQDLRYKVQRGK--YPPIP-PIYSQDLQNFIRSMLQVKPKLRPNCDKIL  251 (256)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHhcCC--CCCCc-hhhCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence              78999999999999999999999743  3445555554432  22222 25788999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       252 ~  252 (256)
T cd08530         252 A  252 (256)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.88  E-value=1.1e-22  Score=201.94  Aligned_cols=155  Identities=21%  Similarity=0.256  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||+|||++|++ ||||||+||+++.++.+||+|||++........   .....++..|+|||.+.+..+ 
T Consensus       120 ~~~~~~ql~~aL~~LH~~gi~-H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~-  194 (353)
T cd07850         120 MSYLLYQMLCGIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGY-  194 (353)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-eCCCCHHHEEECCCCCEEEccCccceeCCCCCC---CCCCcccccccCHHHHhCCCC-
Confidence            457899999999999999998 999999999999999999999999875432211   223456788999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCC-------------hHHHHHHH--------hcCCCC-------------C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-------------DEEIITSV--------TQGSGL-------------R  150 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-------------~~~i~~~i--------~~~~~~-------------~  150 (423)
                        +.++|||||||++|+|++|+.||......             ..++...+        ......             .
T Consensus       195 --~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (353)
T cd07850         195 --KENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLF  272 (353)
T ss_pred             --CCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCccccc
Confidence              89999999999999999999999643210             01111100        000000             0


Q ss_pred             CCC---CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         151 PDT---SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       151 p~~---~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +..   .....+..+.+++.+||+.||++|||+.+++..
T Consensus       273 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         273 PPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             CcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            000   011346678999999999999999999999764

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.88  E-value=1.6e-22  Score=196.92  Aligned_cols=153  Identities=22%  Similarity=0.344  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+. +++ ||||||+||+++.++.+||+|||++......    ......++..|+|||.+.+..+
T Consensus       101 ~~~~~~~i~~~l~~lH~~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~----~~~~~~~~~~~~aPE~~~~~~~  175 (308)
T cd06615         101 LGKISIAVLRGLTYLREKHKIM-HRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MANSFVGTRSYMSPERLQGTHY  175 (308)
T ss_pred             HHHHHHHHHHHHHHHHhhCCEE-ECCCChHHEEEecCCcEEEccCCCccccccc----ccccCCCCcCccChhHhcCCCC
Confidence            568999999999999984 776 9999999999999999999999997654322    1134567888999999876544


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC----------------------------------CCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG----------------------------------SGL  149 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~----------------------------------~~~  149 (423)
                         +.++|+||||+++|++++|..||....  .......+...                                  ...
T Consensus       176 ---~~~~DiwslG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (308)
T cd06615         176 ---TVQSDIWSLGLSLVEMAIGRYPIPPPD--AKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEP  250 (308)
T ss_pred             ---CccchHHHHHHHHHHHHhCCCCCCCcc--hhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCC
Confidence               889999999999999999999985322  11111111100                                  001


Q ss_pred             CCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q psy1840         150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL  187 (423)
Q Consensus       150 ~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L  187 (423)
                      .|..+...++.++.+++.+||..+|++||++.+|++..
T Consensus       251 ~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  288 (308)
T cd06615         251 PPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHP  288 (308)
T ss_pred             CccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence            12222224678899999999999999999999998764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.88  E-value=2e-22  Score=189.92  Aligned_cols=150  Identities=22%  Similarity=0.376  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++ .+||+|||.+........  ......++..|+|||.+.+...
T Consensus       103 ~~~~~~~l~~~l~~lh~~~i~-H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~ape~~~~~~~  179 (257)
T cd08225         103 ILSWFVQISLGLKHIHDRKIL-HRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSME--LAYTCVGTPYYLSPEICQNRPY  179 (257)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cccCCHHHEEEcCCCCeEEecccccchhccCCcc--cccccCCCccccCHHHHcCCCC
Confidence            678999999999999999998 999999999999875 569999999876533221  1123457888999998876544


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|+||||+++||+++|..||...  ...+....+..+.  .+.. ....+.++.+++.+||..+|++||++.++
T Consensus       180 ---~~~~Dv~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l  251 (257)
T cd08225         180 ---NNKTDIWSLGCVLYELCTLKHPFEGN--NLHQLVLKICQGY--FAPI-SPNFSRDLRSLISQLFKVSPRDRPSITSI  251 (257)
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHhccc--CCCC-CCCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence               88999999999999999999999643  3334444433322  1111 22467899999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      +.
T Consensus       252 l~  253 (257)
T cd08225         252 LK  253 (257)
T ss_pred             hh
Confidence            75

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.88  E-value=2.4e-22  Score=188.76  Aligned_cols=150  Identities=20%  Similarity=0.375  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.+++.||.|||+.|++ ||||+|+||+++.++.++|+|||.+.......  .......+++.|+|||.+.+... 
T Consensus       105 ~~~i~~~i~~~l~~lh~~~~~-H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~y~~pe~~~~~~~-  180 (258)
T cd08215         105 ILDWFVQLCLALKYLHSRKIL-HRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV--DLAKTVVGTPYYLSPELCQNKPY-  180 (258)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cccCChHHeEEcCCCcEEECCccceeecccCc--ceecceeeeecccChhHhccCCC-
Confidence            689999999999999999998 99999999999999999999999987654332  11233467788999998876654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||+|++++++++|..||...  ...++........  .+.. +..++..+.+++.+||..+|++||++.+++
T Consensus       181 --~~~~Dv~slG~~~~~l~~g~~p~~~~--~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll  253 (258)
T cd08215         181 --NYKSDIWSLGCVLYELCTLKHPFEGE--NLLELALKILKGQ--YPPI-PSQYSSELRNLVSSLLQKDPEERPSIAQIL  253 (258)
T ss_pred             --CccccHHHHHHHHHHHHcCCCCCCCC--cHHHHHHHHhcCC--CCCC-CCCCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence              88999999999999999999999643  3455555554432  1222 236788999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       254 ~  254 (258)
T cd08215         254 Q  254 (258)
T ss_pred             c
Confidence            5

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.88  E-value=1.8e-22  Score=198.16  Aligned_cols=157  Identities=24%  Similarity=0.297  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-ccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+.|++ ||||||.||+++.++.++|+|||++........ ........++..|+|||.+.+.. 
T Consensus       105 ~~~i~~~l~~~l~~LH~~gi~-H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  182 (330)
T cd07834         105 IQYFLYQILRGLKYLHSANVI-HRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSS-  182 (330)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeeccc-
Confidence            567999999999999999987 999999999999999999999999876543321 01123345678899999998763 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCC-----------------------CC----CCCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR-----------------------PD----TSSL  156 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~-----------------------p~----~~~~  156 (423)
                       ..+.++|+||||+++|+|++|..||....  ..+....+.......                       ..    ....
T Consensus       183 -~~~~~sDi~slG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (330)
T cd07834         183 -RYTKAIDIWSVGCIFAELLTRKPLFPGRD--YIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFP  259 (330)
T ss_pred             -CCCcchhHHHHHHHHHHHHcCCCCcCCCC--HHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcc
Confidence             23889999999999999999999996432  222222222110000                       00    0012


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ..+..+.+++.+||+.+|++||++.+++..
T Consensus       260 ~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  289 (330)
T cd07834         260 GASPEAIDLLEKMLVFDPKKRITADEALAH  289 (330)
T ss_pred             cCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            357889999999999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.88  E-value=1.9e-22  Score=192.87  Aligned_cols=154  Identities=21%  Similarity=0.255  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||.+.......  .......++..|+|||.+.+..  
T Consensus       100 ~~~~~~~i~~~l~~LH~~~i~-H~dl~p~nili~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~~PE~~~~~~--  174 (283)
T cd05118         100 IKSYLYQLLQGLAFCHSHGIL-HRDLKPENLLINTEGVLKLADFGLARSFGSPV--RPYTHYVVTRWYRAPELLLGDK--  174 (283)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCcCHHHEEECCCCcEEEeeeeeeEecCCCc--ccccCccCcccccCcHHHhcCC--
Confidence            678999999999999999988 99999999999999999999999987654332  1112345677899999987652  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc-CCC------------------CCCC-------CCCCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ-GSG------------------LRPD-------TSSLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~-~~~------------------~~p~-------~~~~~~  158 (423)
                      ..+.++|+||||+++|++++|+.||....  ..+.+..+.. ...                  ..+.       .....+
T Consensus       175 ~~~~~~Di~slG~~l~~l~tg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (283)
T cd05118         175 GYSTPVDIWSVGCIFAELLSRRPLFPGKS--EIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNA  252 (283)
T ss_pred             CCCchhHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhh
Confidence            23889999999999999999999996432  1222211111 000                  0000       001246


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +.++.+++.+||+.||.+||++.+++.
T Consensus       253 ~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         253 SPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             CHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            788999999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.88  E-value=2.9e-22  Score=193.82  Aligned_cols=153  Identities=17%  Similarity=0.279  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|++|||+.|++ ||||+|+||+++.++.++|+|||++.......  .......++..|+|||.+.+..+ 
T Consensus       118 ~~~~~~ql~~~l~~lH~~giv-H~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~~pE~~~~~~~-  193 (292)
T cd06657         118 IAAVCLAVLKALSVLHAQGVI-HRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--PRRKSLVGTPYWMAPELISRLPY-  193 (292)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEECCCCCEEEcccccceeccccc--ccccccccCccccCHHHhcCCCC-
Confidence            578999999999999999988 99999999999999999999999876543221  11233457788999998876544 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|++++|..||...  ...+....+....+.... ....+++.+.+++.+||+.+|.+||++.+++
T Consensus       194 --~~~~Dv~slGvil~el~tg~~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll  268 (292)
T cd06657         194 --GPEVDIWSLGIMVIEMVDGEPPYFNE--PPLKAMKMIRDNLPPKLK-NLHKVSPSLKGFLDRLLVRDPAQRATAAELL  268 (292)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhhCCcccC-CcccCCHHHHHHHHHHHhCCcccCcCHHHHh
Confidence              78999999999999999999999642  233333444332211111 1234678999999999999999999999988


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      ..
T Consensus       269 ~~  270 (292)
T cd06657         269 KH  270 (292)
T ss_pred             cC
Confidence            74

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.88  E-value=1.6e-22  Score=199.02  Aligned_cols=156  Identities=21%  Similarity=0.270  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++.........  .......++..|+|||.+.+..
T Consensus       107 ~~~~~~qi~~aL~~LH~~giv-H~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~  185 (332)
T cd07857         107 FQSFIYQILCGLKYIHSANVL-HRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQ  185 (332)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCC
Confidence            578999999999999999998 9999999999999999999999998754322111  1123346788899999876532


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---------------------------CCCCCCCCCC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---------------------------GSGLRPDTSS  155 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---------------------------~~~~~p~~~~  155 (423)
                        ..+.++|+||||+++|++++|..||....  .......+..                           ..........
T Consensus       186 --~~~~~~Di~slGv~l~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (332)
T cd07857         186 --SYTKAIDVWSVGCILAELLGRKPVFKGKD--YVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIF  261 (332)
T ss_pred             --CCCcHHHHHHHHHHHHHHHhCCcCCCCCC--HHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhC
Confidence              23889999999999999999999986432  1111111110                           0000000011


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..++..+.+++.+||+.||++|||+.+++.
T Consensus       262 ~~~~~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         262 PNANPLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             CCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            235788999999999999999999998864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.88  E-value=3.8e-22  Score=194.90  Aligned_cols=151  Identities=21%  Similarity=0.316  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.|+.|||++|++ ||||+|+||+++.++.+||+|||++.....      .....++..|+|||.+......
T Consensus       123 ~~~~~~qi~~al~~LH~~gi~-H~dl~p~nili~~~~~~kL~dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~  195 (313)
T cd06633         123 IAAITHGALQGLAYLHSHNMI-HRDIKAGNILLTEPGQVKLADFGSASKSSP------ANSFVGTPYWMAPEVILAMDEG  195 (313)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCChhhEEECCCCCEEEeecCCCcccCC------CCCccccccccChhhccccCCC
Confidence            678999999999999999988 999999999999999999999998754221      1234677889999998532112


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      ..+.++||||||+++|+|++|..||...  ........+....  .+......++..+.+++.+||+.+|.+||++.+++
T Consensus       196 ~~~~~sDv~slGvil~el~~g~~p~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l  271 (313)
T cd06633         196 QYDGKVDVWSLGITCIELAERKPPLFNM--NAMSALYHIAQND--SPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELL  271 (313)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHhcC--CCCCCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence            3478999999999999999999998643  2233333333221  23233345678899999999999999999999988


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      ..
T Consensus       272 ~~  273 (313)
T cd06633         272 RH  273 (313)
T ss_pred             cC
Confidence            64

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.88  E-value=1.2e-22  Score=195.19  Aligned_cols=157  Identities=20%  Similarity=0.337  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.+++.|+.|||+ .+++ ||||||+||+++.++.++|+|||++.......    .....++..|+|||.+.+...
T Consensus       105 ~~~~~~~i~~~l~~LH~~~~i~-H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~----~~~~~~~~~~~aPE~~~~~~~  179 (284)
T cd06620         105 LGKIAVAVVEGLTYLYNVHRIM-HRDIKPSNILVNSRGQIKLCDFGVSGELINSI----ADTFVGTSTYMSPERIQGGKY  179 (284)
T ss_pred             HHHHHHHHHHHHHHHHHhcCee-ccCCCHHHEEECCCCcEEEccCCcccchhhhc----cCccccCcccCCHHHHccCCC
Confidence            46899999999999997 4776 99999999999999999999999976432211    123467888999999876644


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCC------ChH---HHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM------TDE---EIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~------~~~---~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                         +.++|+|||||++|++++|..||.....      ...   +....+....  .+......++.++.+++.+||+.||
T Consensus       180 ---~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~dp  254 (284)
T cd06620         180 ---TVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP--PPRLPSSDFPEDLRDFVDACLLKDP  254 (284)
T ss_pred             ---CccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc--CCCCCchhcCHHHHHHHHHHhcCCc
Confidence               8899999999999999999999974322      111   2222222221  2222223478899999999999999


Q ss_pred             CCCCCHHHHHHHHHHHh
Q psy1840         175 ELRPDLRFVHHKLKEMN  191 (423)
Q Consensus       175 ~~RPt~~~I~~~L~~i~  191 (423)
                      ++||++.++++....+.
T Consensus       255 ~~Rpt~~e~~~~~~~~~  271 (284)
T cd06620         255 TERPTPQQLCAMPPFIQ  271 (284)
T ss_pred             ccCcCHHHHhcCccccc
Confidence            99999999987654433

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.88  E-value=1.9e-22  Score=190.70  Aligned_cols=150  Identities=19%  Similarity=0.245  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.+++ |+||+|+||++++++.++|+|||++.......   ......++..|+|||.+.+...
T Consensus       101 ~~~~~~~~i~~~l~~lh~~~i~-h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~y~~PE~~~~~~~  176 (258)
T cd05578         101 QVKFWICEIVLALEYLHSKGII-HRDIKPDNILLDEQGHVHITDFNIATKVTPDT---LTTSTSGTPGYMAPEVLCRQGY  176 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-ccCCCHHHeEEcCCCCEEEeecccccccCCCc---cccccCCChhhcCHHHHcccCC
Confidence            3678999999999999999987 99999999999999999999999977543322   1234457778999999877654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC-hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH--
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL--  180 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~--  180 (423)
                         +.++|+||||+++|++++|..||...... ...+........   +. .+...+..+.+++.+||..||.+||++  
T Consensus       177 ---~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~i~~~l~~~p~~R~~~~~  249 (258)
T cd05578         177 ---SVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETAD---VL-YPATWSTEAIDAINKLLERDPQKRLGDNL  249 (258)
T ss_pred             ---CCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcccc---cc-CcccCcHHHHHHHHHHccCChhHcCCccH
Confidence               88999999999999999999999754322 233333322211   11 223567899999999999999999999  


Q ss_pred             HHHH
Q psy1840         181 RFVH  184 (423)
Q Consensus       181 ~~I~  184 (423)
                      .+++
T Consensus       250 ~~l~  253 (258)
T cd05578         250 KDLK  253 (258)
T ss_pred             HHHh
Confidence            5543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.88  E-value=2.4e-22  Score=192.58  Aligned_cols=156  Identities=23%  Similarity=0.305  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ |+||||+||+++.++.++|+|||++........ .......++..|+|||.+.+..  
T Consensus       101 ~~~~~~~i~~~l~~lH~~~i~-H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~--  176 (286)
T cd07832         101 VKSYMRMLLKGVAYMHANGIM-HRDLKPANLLISADGVLKIADFGLARLFSEEEP-RLYSHQVATRWYRAPELLYGAR--  176 (286)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCcCHHHEEEcCCCcEEEeeeeecccccCCCC-CccccccCcccccCceeeeccc--
Confidence            678999999999999999988 999999999999999999999999876543221 1122346788899999986543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-------------------CCCCC-------CCCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-------------------LRPDT-------SSLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-------------------~~p~~-------~~~~~  158 (423)
                      ..+.++||||+|++++||++|..||...  ...+....+.....                   ..+..       ...+.
T Consensus       177 ~~~~~~Di~slG~~l~~l~tg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (286)
T cd07832         177 KYDPGVDLWAVGCIFAELLNGSPLFPGE--NDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDA  254 (286)
T ss_pred             cCCchhHHHHHHHHHHHHHcCCcCcCCC--CHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCc
Confidence            2378999999999999999998777532  22222222211000                   00000       01245


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +..+.+++++||..+|++||++.+++..
T Consensus       255 ~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         255 SPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             cHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            6899999999999999999999998753

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.88  E-value=2.1e-22  Score=194.62  Aligned_cols=155  Identities=23%  Similarity=0.232  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||++||.|||++|++ ||||||+||+++.++.+||+|||++.........  .....++..|+|||.+.+..  
T Consensus       104 ~~~~~~qi~~al~~lH~~~i~-H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~--  178 (298)
T cd07841         104 IKSYMLMTLRGLEYLHSNWIL-HRDLKPNNLLIASDGVLKLADFGLARSFGSPNRK--MTHQVVTRWYRAPELLFGAR--  178 (298)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ecCCChhhEEEcCCCCEEEccceeeeeccCCCcc--ccccccceeeeCHHHHhCCC--
Confidence            578999999999999999988 9999999999999999999999998765332211  12234567799999886533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC---------------CC-----CCCC----CCCCchH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS---------------GL-----RPDT----SSLDCAP  160 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~---------------~~-----~p~~----~~~~~~~  160 (423)
                      ..+.++|||||||++||+++|..||....  ..+....+....               ..     .+..    .....+.
T Consensus       179 ~~~~~~Dv~slG~il~e~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (298)
T cd07841         179 HYGVGVDMWSVGCIFAELLLRVPFLPGDS--DIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASD  256 (298)
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCccccCCc--cHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccH
Confidence            23789999999999999999977775422  222222221100               00     0000    0123567


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .+.+++.+||+.+|++||++.+++..
T Consensus       257 ~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         257 DALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             HHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            89999999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.88  E-value=2.4e-22  Score=194.46  Aligned_cols=155  Identities=19%  Similarity=0.249  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||++++++.+||+|||++......... ......++..|+|||.+.+..  
T Consensus       118 ~~~i~~qi~~aL~~LH~~~i~-H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~--  193 (302)
T cd07864         118 IKSFMKQLLEGLNYCHKKNFL-HRDIKCSNILLNNKGQIKLADFGLARLYNSEESR-PYTNKVITLWYRPPELLLGEE--  193 (302)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEECCCCcEEeCcccccccccCCccc-ccccceeccCccChHHhcCCC--
Confidence            679999999999999999998 9999999999999999999999998765433211 112234566799999886533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---CC--CCCCC---------------------CCCCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---GS--GLRPD---------------------TSSLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---~~--~~~p~---------------------~~~~~~  158 (423)
                      ..+.++|||||||++|||++|+.||....  ..+....+..   ..  ...|.                     .....+
T Consensus       194 ~~~~~~Di~slG~~~~el~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (302)
T cd07864         194 RYGPAIDVWSCGCILGELFTKKPIFQANQ--ELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFI  271 (302)
T ss_pred             CCCchhHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCC
Confidence            23789999999999999999999996422  2222222221   10  00000                     011236


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +..+.+++.+||+.+|++||++.+++.
T Consensus       272 ~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         272 PTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            789999999999999999999998875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.88  E-value=1.5e-22  Score=199.35  Aligned_cols=158  Identities=15%  Similarity=0.156  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++........ .......|++.|+|||++.+..  
T Consensus       104 ~~~~~~qi~~al~~lH~~~ii-HrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~  181 (332)
T cd05623         104 ARFYLAEMVIAIDSVHQLHYV-HRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT-VQSSVAVGTPDYISPEILQAMEDG  181 (332)
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-ecCCCHHHEEECCCCCEEEeecchheecccCCc-ceecccccCccccCHHHHhccccC
Confidence            457889999999999999998 999999999999999999999999865432211 1123356899999999986321  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC-CCCCCCCCchHHHHHHHHHhhhcCCC--CCCC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPE--LRPD  179 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~-~p~~~~~~~~~~l~~Li~~C~~~dP~--~RPt  179 (423)
                      ...++.++|||||||++|||++|+.||..  .+..+....+...... ..+.....+++++.+++.+|+..+++  .|++
T Consensus       182 ~~~~~~~~DvwSlGvil~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~  259 (332)
T cd05623         182 KGKYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNG  259 (332)
T ss_pred             CCCCCCcCCEEeeHHHHHHHhcCCCCCCC--CCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCCC
Confidence            11348899999999999999999999974  3445555555543221 11112235789999999998865444  3678


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       260 ~~~~~~h  266 (332)
T cd05623         260 IEDFKQH  266 (332)
T ss_pred             HHHHhCC
Confidence            8888754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.88  E-value=2e-22  Score=194.94  Aligned_cols=152  Identities=18%  Similarity=0.316  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||++|++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..+ 
T Consensus       117 ~~~i~~~l~~al~~LH~~gi~-H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~-  192 (293)
T cd06647         117 IAAVCRECLQALEFLHSNQVI-HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAY-  192 (293)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-eccCCHHHEEEcCCCCEEEccCcceeccccccc--ccccccCChhhcCchhhccCCC-
Confidence            578999999999999999987 999999999999999999999998765432221  1123457788999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC-CCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT-SSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~-~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|+||||+++|++++|..||....  ..+....+....  .+.. .....+..+.+++.+||+.+|++||++.++
T Consensus       193 --~~~~Dv~slG~ll~~ll~g~~pf~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~i  266 (293)
T cd06647         193 --GPKVDIWSLGIMAIEMVEGEPPYLNEN--PLRALYLIATNG--TPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKEL  266 (293)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCCC--hhhheeehhcCC--CCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence              889999999999999999999996432  112111121111  1111 123467889999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      +..
T Consensus       267 l~h  269 (293)
T cd06647         267 LQH  269 (293)
T ss_pred             hcC
Confidence            865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG0667|consensus

Probab=99.88  E-value=1.2e-22  Score=205.77  Aligned_cols=110  Identities=22%  Similarity=0.400  Sum_probs=90.7

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC--CccEEEeccCCcccccCCCcccccccccCCc
Q psy1840          13 PNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS--RWVLQIADFGLHAFKAGQDETGQERKLRRRK   90 (423)
Q Consensus        13 ~~p~~~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~--~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~   90 (423)
                      .+.+.++.++. -..|+.||+.||.+||+.+|| |+||||+||||-.  +..+||+|||.+.+.....     .+...+.
T Consensus       280 ~n~f~Glsl~~-ir~~~~Qil~~L~~L~~l~II-HcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~v-----ytYiQSR  352 (586)
T KOG0667|consen  280 NNKFRGLSLPL-VRKFAQQILTALLFLHELGII-HCDLKPENILLKDPKRSRIKVIDFGSSCFESQRV-----YTYIQSR  352 (586)
T ss_pred             hcCCCCCCHHH-HHHHHHHHHHHHHHHHhCCee-eccCChhheeeccCCcCceeEEecccccccCCcc-----eeeeecc
Confidence            34445565554 358999999999999999999 9999999999963  4579999999987653222     2556778


Q ss_pred             cccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q psy1840          91 LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHL  132 (423)
Q Consensus        91 ~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~  132 (423)
                      .|.|||++.|..+   +.+.||||||||+.||++|.+-|.+.
T Consensus       353 fYRAPEVILGlpY---~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  353 FYRAPEVILGLPY---DTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             ccccchhhccCCC---CCccceeehhhhHHhHhcCccccCCC
Confidence            8999999999877   99999999999999999998777653

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.88  E-value=2.7e-22  Score=193.14  Aligned_cols=156  Identities=17%  Similarity=0.193  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       105 ~~~~~~ql~~al~~lH~~~i~-H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~--  179 (291)
T cd07844         105 VRLFLFQLLRGLAYCHQRRVL-HRDLKPQNLLISERGELKLADFGLARAKSVPSK--TYSNEVVTLWYRPPDVLLGST--  179 (291)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cccCCHHHEEEcCCCCEEECccccccccCCCCc--cccccccccccCCcHHhhcCc--
Confidence            578899999999999999988 999999999999999999999999764322111  112234567899999887533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh---cC---------------C----CCCCCC---CCCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT---QG---------------S----GLRPDT---SSLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~---~~---------------~----~~~p~~---~~~~~~  159 (423)
                      ..+.++||||+|+++|+|++|..||.......+.+.....   ..               .    ...+..   ......
T Consensus       180 ~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (291)
T cd07844         180 EYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLD  259 (291)
T ss_pred             ccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCC
Confidence            2378999999999999999999999654322222111110   00               0    000000   001123


Q ss_pred             --HHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         160 --PSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       160 --~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                        ..+.+++.+||+.+|++||++.+++.
T Consensus       260 ~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         260 RIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             CchhHHHHHHHHhccCcccccCHHHHhc
Confidence              78889999999999999999998864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.88  E-value=1.6e-22  Score=199.56  Aligned_cols=155  Identities=22%  Similarity=0.283  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+++++ ||||||+||+++.++.+||+|||++.......  .......++..|+|||.+....  
T Consensus       110 ~~~i~~qi~~aL~~LH~~~i~-H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~--  184 (337)
T cd07858         110 CQYFLYQLLRGLKYIHSANVL-HRDLKPSNLLLNANCDLKICDFGLARTTSEKG--DFMTEYVVTRWYRAPELLLNCS--  184 (337)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cCCCCHHHEEEcCCCCEEECcCccccccCCCc--ccccccccccCccChHHHhcCC--
Confidence            578999999999999999988 99999999999999999999999987553221  1112345678899999886532  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh-----------------------cCCCCCCC----CCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-----------------------QGSGLRPD----TSSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~-----------------------~~~~~~p~----~~~~~  157 (423)
                      ..+.++|||||||++|+|++|+.||.....  .+....+.                       ......+.    .....
T Consensus       185 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (337)
T cd07858         185 EYTTAIDVWSVGCIFAELLGRKPLFPGKDY--VHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPH  262 (337)
T ss_pred             CCCCcccHHHHHHHHHHHHcCCCCCCCCCh--HHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHccc
Confidence            138899999999999999999999964321  11111110                       00000000    01135


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +++++.+++++||+.+|++||++.++++.
T Consensus       263 ~~~~~~~li~~~l~~~P~~Rps~~ell~h  291 (337)
T cd07858         263 ANPLAIDLLEKMLVFDPSKRITVEEALAH  291 (337)
T ss_pred             CCHHHHHHHHHHhcCChhhccCHHHHHcC
Confidence            78899999999999999999999999875

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.88  E-value=1.9e-22  Score=198.65  Aligned_cols=159  Identities=21%  Similarity=0.293  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||++.........  .......++..|+|||.+.+..
T Consensus       109 ~~~i~~qi~~aL~~LH~~~iv-H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  187 (334)
T cd07855         109 IRYFLYQLLRGLKYIHSANVI-HRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLP  187 (334)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCc
Confidence            678999999999999999988 9999999999999999999999998754322211  1112346778899999986532


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-------------HHHHHHH--------hcCCCCCCCCC----CCC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-------------EEIITSV--------TQGSGLRPDTS----SLD  157 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-------------~~i~~~i--------~~~~~~~p~~~----~~~  157 (423)
                        ..+.++||||||+++|||++|..||.......             .++...+        .......+...    ...
T Consensus       188 --~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (334)
T cd07855         188 --EYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPK  265 (334)
T ss_pred             --ccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHccc
Confidence              23889999999999999999999996432110             0111000        00001111110    124


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .+.++.+++++||+.+|++||++.+++..
T Consensus       266 ~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  294 (334)
T cd07855         266 ASPEALDLLSQMLQFDPEERITVEQALQH  294 (334)
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            67899999999999999999999998764

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.88  E-value=2.4e-22  Score=195.47  Aligned_cols=158  Identities=20%  Similarity=0.189  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC----CccEEEeccCCcccccCCCc-ccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS----RWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~----~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.    ++.+||+|||++........ ........++..|+|||.+.
T Consensus       110 ~~~i~~qi~~~l~~lH~~~i~-h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  188 (316)
T cd07842         110 VKSLLWQILNGVHYLHSNWVL-HRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLL  188 (316)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-eCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHh
Confidence            468999999999999999988 9999999999999    99999999999876533222 11223345678899999886


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-----------HHHHHHHhcC-------------------CCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-----------EEIITSVTQG-------------------SGL  149 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-----------~~i~~~i~~~-------------------~~~  149 (423)
                      +..  ..+.++||||||+++++|++|..||.......           ..+...+...                   ...
T Consensus       189 ~~~--~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  266 (316)
T cd07842         189 GAR--HYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFK  266 (316)
T ss_pred             CCC--CCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhcc
Confidence            643  23789999999999999999999996432211           0111111000                   000


Q ss_pred             CCCCC----------CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         150 RPDTS----------SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       150 ~p~~~----------~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .....          ....+.++.+++.+||+.||++|||+.+++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         267 TKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             CCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            00000          0145678999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.88  E-value=2.6e-22  Score=198.59  Aligned_cols=152  Identities=18%  Similarity=0.238  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||+++.....     .....++..|+|||.+.+..  
T Consensus       119 ~~~~~~qi~~aL~~LH~~~i~-H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~--  190 (342)
T cd07879         119 VQYLVYQMLCGLKYIHSAGII-HRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRWYRAPEVILNWM--  190 (342)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCCEEEeeCCCCcCCCCC-----CCCceeeecccChhhhcCcc--
Confidence            467899999999999999988 9999999999999999999999998654221     12335677899999987632  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------------CCCCCCCC----CCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------------SGLRPDTS----SLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------------~~~~p~~~----~~~  157 (423)
                      ..+.++|||||||++|||++|+.||....  ....+..+...                       .+..+...    ...
T Consensus       191 ~~~~~~Dv~slGvil~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (342)
T cd07879         191 HYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPK  268 (342)
T ss_pred             ccCchHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcC
Confidence            23789999999999999999999997532  11112211110                       00000000    123


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .+..+.+++.+||+.||++||++.+++..
T Consensus       269 ~~~~~~~li~~~l~~dP~~R~~~~e~l~h  297 (342)
T cd07879         269 ASPQAVDLLEKMLELDVDKRLTATEALEH  297 (342)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            56789999999999999999999999753

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=4.1e-22  Score=196.28  Aligned_cols=158  Identities=16%  Similarity=0.173  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.||+.||+|||+++++ ||||||+|||++.++.+||+|||++........ .......|++.|+|||++....  
T Consensus       104 ~~~~~~qi~~~l~~lH~~~iv-H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~  181 (331)
T cd05597         104 ARFYLAEMVLAIDSVHQLGYV-HRDIKPDNVLLDKNGHIRLADFGSCLRLLADGT-VQSNVAVGTPDYISPEILQAMEDG  181 (331)
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-ECCCCHHHEEECCCCCEEEEECCceeecCCCCC-ccccceeccccccCHHHHhhcccc
Confidence            467899999999999999998 999999999999999999999999865432221 1112346889999999987421  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-CCCCCCCCCchHHHHHHHHHhhhcCC--CCCCC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDP--ELRPD  179 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-~~p~~~~~~~~~~l~~Li~~C~~~dP--~~RPt  179 (423)
                      ....+.++|||||||++|||++|+.||...  +..+....+..... .........++..+.+++++|+..++  ..||+
T Consensus       182 ~~~~~~~~DiwslG~~l~el~~g~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~  259 (331)
T cd05597         182 KGRYGPECDWWSLGVCMYEMLYGETPFYAE--SLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNG  259 (331)
T ss_pred             ccCCCCcceeehhhhHHHHHhhCCCCCCCC--CHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCcccccCCCC
Confidence            113478999999999999999999999743  33444444443221 11111123478899999999886433  34788


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.+++..
T Consensus       260 ~~~~l~h  266 (331)
T cd05597         260 LQDFKDH  266 (331)
T ss_pred             HHHHhcC
Confidence            8888764

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.87  E-value=5.7e-22  Score=188.13  Aligned_cols=155  Identities=28%  Similarity=0.420  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcc--cccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.|++.||.|||++|++ |+||+|+||+++.++ .+||+|||.+.........  .......++..|+|||.+.+.
T Consensus       105 ~~~~~~ql~~al~~LH~~~i~-H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~  183 (268)
T cd06630         105 IINYTEQLLRGLSYLHENQII-HRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGE  183 (268)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccC
Confidence            578899999999999999998 999999999998775 6999999998765432111  111234577889999998765


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .+   +.++|+||+|+++|++++|..||..... .....+..+.... ..+. .+...++++.+++.+||..+|++||++
T Consensus       184 ~~---~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~i~~~l~~~p~~R~~~  258 (268)
T cd06630         184 QY---GRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASAT-TAPS-IPEHLSPGLRDVTLRCLELQPEDRPPS  258 (268)
T ss_pred             CC---CcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccC-CCCC-CchhhCHHHHHHHHHHcCCCcccCcCH
Confidence            54   8899999999999999999999964322 1222222222211 1122 223567899999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .+++.
T Consensus       259 ~~ll~  263 (268)
T cd06630         259 RELLK  263 (268)
T ss_pred             HHHhc
Confidence            99874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.87  E-value=6.3e-22  Score=194.50  Aligned_cols=158  Identities=22%  Similarity=0.307  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-----cccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.|++.||+|||+.|++ ||||||+||+++.++.+|++|||...........     .......++..|+|||.+.
T Consensus       103 ~~~~~~qi~~aL~~lH~~~iv-HrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  181 (328)
T cd08226         103 IGNILFGALRGLNYLHQNGYI-HRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLR  181 (328)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhc
Confidence            358999999999999999998 9999999999999999999999864322111100     0001123455699999997


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCC----------------------------
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP----------------------------  151 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p----------------------------  151 (423)
                      +... .++.++|||||||++||+++|..||..... .......+. .....|                            
T Consensus       182 ~~~~-~~~~~~DiwslG~~l~el~~g~~p~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (328)
T cd08226         182 QDLY-GYNVKSDIYSVGITACELATGRVPFQDMLR-TQMLLQKLK-GPPYSPLDITTFPCEESRMKNSQSGVDSGIGESV  258 (328)
T ss_pred             CCCC-CCCchhhHHHHHHHHHHHHhCCCCCCCcCh-HHHHHHHhc-CCCCCCccccccchhhhhhccchhhhhcccccch
Confidence            6432 347899999999999999999999975321 122222211 111100                            


Q ss_pred             ---------------CCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         152 ---------------DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       152 ---------------~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                     ......++..+.+++.+||+.||++|||+.++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~  308 (328)
T cd08226         259 VAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSH  308 (328)
T ss_pred             hccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                           00012356789999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG0663|consensus

Probab=99.87  E-value=2.4e-22  Score=188.62  Aligned_cols=161  Identities=22%  Similarity=0.287  Sum_probs=120.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcc
Q psy1840          18 PFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL   97 (423)
Q Consensus        18 ~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~   97 (423)
                      ||...+ .-.++.|++.|++|||.+.|+ |||||++|+|+...|.+||+|||+|+......  ...+...-|.+|.|||.
T Consensus       173 ~F~~~e-vK~L~~QlL~glk~lH~~wil-HRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~--k~~T~lVVTLWYRaPEL  248 (419)
T KOG0663|consen  173 PFLPGE-VKTLMLQLLRGLKHLHDNWIL-HRDLKTSNLLLSHKGILKIADFGLAREYGSPL--KPYTPLVVTLWYRAPEL  248 (419)
T ss_pred             CCchHH-HHHHHHHHHHHHHHHhhceeE-ecccchhheeeccCCcEEecccchhhhhcCCc--ccCcceEEEeeecCHHH
Confidence            454433 346889999999999999988 99999999999999999999999998765442  22245567889999999


Q ss_pred             ccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--C---CCC--------------CCCC-----
Q psy1840          98 LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--G---SGL--------------RPDT-----  153 (423)
Q Consensus        98 l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--~---~~~--------------~p~~-----  153 (423)
                      +.+..  .++.+.|+||+|||+.|++++++-|.+...- ++ +.+|-+  |   ...              ++..     
T Consensus       249 LLG~~--tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~-dQ-l~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~l  324 (419)
T KOG0663|consen  249 LLGAK--TYSTAVDMWSVGCIFAELLTQKPLFPGKSEI-DQ-LDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNL  324 (419)
T ss_pred             hcCCc--ccCcchhhhhHHHHHHHHHhcCCCCCCCchH-HH-HHHHHHHhCCCccccCCCccccchhhccccCCCCchhh
Confidence            99865  3599999999999999999999888764321 11 222110  0   000              0111     


Q ss_pred             ----CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         154 ----SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       154 ----~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                          .....+..-.+|+...+..||.+|.|+.+.++.
T Consensus       325 r~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  325 RKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             hhhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence                111245778899999999999999999987653

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.87  E-value=5.1e-22  Score=191.07  Aligned_cols=158  Identities=19%  Similarity=0.226  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||+++.++.++|+|||++........ .......++..|+|||.+.+... 
T Consensus       107 ~~~~~~ql~~~l~~lH~~~~~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~-  183 (288)
T cd05583         107 VRVYIAEIVLALDHLHQLGII-YRDIKLENILLDSEGHVVLTDFGLSKEFLAEEE-ERAYSFCGTIEYMAPEVIRGGSG-  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCCHHHeEECCCCCEEEEECccccccccccc-cccccccCCccccCHHHhcCCCC-
Confidence            467888999999999999988 999999999999999999999999775432221 11123457788999999866431 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ..+.++||||||+++|||++|..||....  ....++...+.......    +..++..+.+++.+||+.+|++|||+.+
T Consensus       184 ~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~li~~~l~~~p~~R~t~~~  259 (288)
T cd05583         184 GHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPF----PKTMSAEARDFIQKLLEKDPKKRLGANG  259 (288)
T ss_pred             CCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCCC----CcccCHHHHHHHHHHhcCCHhhccCcch
Confidence            23789999999999999999999995321  22344444443332211    2246789999999999999999999888


Q ss_pred             HHHHHHH
Q psy1840         183 VHHKLKE  189 (423)
Q Consensus       183 I~~~L~~  189 (423)
                      +...|..
T Consensus       260 ~~~~l~~  266 (288)
T cd05583         260 ADEIKNH  266 (288)
T ss_pred             HHHHhcC
Confidence            7765543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.87  E-value=5e-22  Score=192.70  Aligned_cols=156  Identities=22%  Similarity=0.253  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc---------ccccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG---------QERKLRRRKLYKAP   95 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~---------~~~~~~gt~~y~AP   95 (423)
                      ...++.|+++||.|||+.|++ ||||||+||++++++.+||+|||++..........         ......+++.|+||
T Consensus       117 ~~~i~~~l~~al~~lH~~~i~-H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (311)
T cd07866         117 IKCYMLQLLEGINYLHENHIL-HRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPP  195 (311)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCCh
Confidence            578999999999999999988 99999999999999999999999987543222111         11223457789999


Q ss_pred             ccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC---CC-----------------CCCCCC-
Q psy1840          96 ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG---SG-----------------LRPDTS-  154 (423)
Q Consensus        96 E~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~---~~-----------------~~p~~~-  154 (423)
                      |.+.+..  ..+.++|||||||++|||++|..||....  .....+.+...   ..                 ..+... 
T Consensus       196 E~~~~~~--~~~~~~Dv~slG~il~el~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (311)
T cd07866         196 ELLLGER--RYTTAVDIWGIGCVFAEMFTRRPILQGKS--DIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPR  271 (311)
T ss_pred             HHhhCCC--ccCchhHhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCc
Confidence            9886543  23789999999999999999999996422  22222221110   00                 000000 


Q ss_pred             -----CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         155 -----SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       155 -----~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                           .....+.+.+++.+||+.||++|||+.+++.
T Consensus       272 ~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         272 TLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             cHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence                 0234467899999999999999999998864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=8.9e-22  Score=184.81  Aligned_cols=150  Identities=20%  Similarity=0.390  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.|++ ||||+|+||+++.++.++|+|||++.........  .....++..|+|||...+... 
T Consensus       101 ~~~~~~~i~~~l~~lH~~~i~-H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~y~~pe~~~~~~~-  176 (254)
T cd06627         101 VAVYVYQVLQGLAYLHEQGVI-HRDIKAANILTTKDGVVKLADFGVATKLNDVSKD--DASVVGTPYWMAPEVIEMSGA-  176 (254)
T ss_pred             HHHHHHHHHHHHHHHhhCCcc-cCCCCHHHEEECCCCCEEEeccccceecCCCccc--ccccccchhhcCHhhhcCCCC-
Confidence            578999999999999999998 9999999999999999999999998765433221  233457788999999876543 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||+|+++|++++|..||....  ...........  ..+.. ...++..+.+++.+||..+|++||++.+++
T Consensus       177 --~~~~Dv~~lG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~--~~~~~-~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l  249 (254)
T cd06627         177 --STASDIWSLGCTVIELLTGNPPYYDLN--PMAALFRIVQD--DHPPL-PEGISPELKDFLMQCFQKDPNLRPTAKQLL  249 (254)
T ss_pred             --CcchhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHhcc--CCCCC-CCCCCHHHHHHHHHHHhCChhhCcCHHHHh
Confidence              889999999999999999999997432  22223333222  12222 235688999999999999999999999886


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      .
T Consensus       250 ~  250 (254)
T cd06627         250 K  250 (254)
T ss_pred             c
Confidence            4

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG1027|consensus

Probab=99.87  E-value=2.6e-23  Score=214.34  Aligned_cols=174  Identities=26%  Similarity=0.378  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-----CccEEEeccCCcccccCCCcc-cccccccCCccccCCc
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-----RWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPE   96 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-----~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE   96 (423)
                      +.-+.+..|+++||+|||+.+|+ ||||||.||||+.     ...++|+|||+++.+...... .......||-+|+|||
T Consensus       606 i~~~~~l~q~~~GlaHLHsl~iV-HRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE  684 (903)
T KOG1027|consen  606 IDPISVLSQIASGLAHLHSLKIV-HRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPE  684 (903)
T ss_pred             ccHHHHHHHHHHHHHHHHhcccc-cccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHH
Confidence            34578999999999999999998 9999999999975     257899999999887654432 3345678999999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhC-CCCCCCCCCChHHHHHHHhcCCCCCCCCCC-CCchHHHHHHHHHhhhcCC
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSGLRPDTSS-LDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg-~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~-~~~~~~l~~Li~~C~~~dP  174 (423)
                      ++.....   ++++||||+||++|..++| ..||++.....    ..|..+....-.... .++  +..+||.+|++.+|
T Consensus       685 ~L~~~~~---~~avDiFslGCvfyYvltgG~HpFGd~~~R~----~NIl~~~~~L~~L~~~~d~--eA~dLI~~ml~~dP  755 (903)
T KOG1027|consen  685 QLREDRK---TQAVDIFSLGCVFYYVLTGGSHPFGDSLERQ----ANILTGNYTLVHLEPLPDC--EAKDLISRMLNPDP  755 (903)
T ss_pred             HHhcccc---CcccchhhcCceEEEEecCCccCCCchHHhh----hhhhcCccceeeeccCchH--HHHHHHHHhcCCCc
Confidence            9998765   7899999999999999986 78997532211    223333322211111 122  88999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q psy1840         175 ELRPDLRFVHHKLKEMNAGLKANIFDNMLAIM  206 (423)
Q Consensus       175 ~~RPt~~~I~~~L~~i~~~~~~~~~d~~~~~~  206 (423)
                      ..||++.+|+.+--......+..+..+.-.+.
T Consensus       756 ~~RPsa~~VL~HPlFW~~ekrL~Fl~dvSDRv  787 (903)
T KOG1027|consen  756 QLRPSATDVLNHPLFWDSEKRLSFLRDVSDRV  787 (903)
T ss_pred             ccCCCHHHHhCCCccCChHHHHHHHHhhhhhh
Confidence            99999999987554444333333333333333

>KOG0580|consensus

Probab=99.87  E-value=3.6e-22  Score=179.84  Aligned_cols=148  Identities=19%  Similarity=0.249  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      -..+.|++.|+.|+|.+++| ||||||+|+|++..+.+||+|||-+....    .....+.+||.-|.+||+..+...  
T Consensus       127 a~Yi~q~A~Al~y~h~k~VI-hRdiKpenlLlg~~~~lkiAdfGwsV~~p----~~kR~tlcgt~dyl~pEmv~~~~h--  199 (281)
T KOG0580|consen  127 ATYIKQLANALLYCHLKRVI-HRDIKPENLLLGSAGELKIADFGWSVHAP----SNKRKTLCGTLDYLPPEMVEGRGH--  199 (281)
T ss_pred             hHHHHHHHHHHHHhccCCcc-cCCCCHHHhccCCCCCeeccCCCceeecC----CCCceeeecccccCCHhhcCCCCc--
Confidence            46899999999999999998 99999999999999999999999865432    233467899999999999988765  


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                       +...|+|++|++.||++.|..||..  .+..+...++.......|    ..++.+..++|.+|+..+|.+|.+..+++.
T Consensus       200 -d~~Vd~w~lgvl~yeflvg~ppFes--~~~~etYkrI~k~~~~~p----~~is~~a~dlI~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  200 -DKFVDLWSLGVLCYEFLVGLPPFES--QSHSETYKRIRKVDLKFP----STISGGAADLISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             -cchhhHHHHHHHHHHHHhcCCchhh--hhhHHHHHHHHHccccCC----cccChhHHHHHHHHhccCccccccHHHHhh
Confidence             8999999999999999999999974  346788888887666655    357889999999999999999999999876


Q ss_pred             HH
Q psy1840         186 KL  187 (423)
Q Consensus       186 ~L  187 (423)
                      .-
T Consensus       273 hp  274 (281)
T KOG0580|consen  273 HP  274 (281)
T ss_pred             hH
Confidence            53

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.87  E-value=1.1e-21  Score=187.55  Aligned_cols=154  Identities=21%  Similarity=0.212  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||+|+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       100 ~~~~~~~i~~~l~~LH~~~i~-H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~--  174 (282)
T cd07829         100 IKSIMYQLLRGLAYCHSHRIL-HRDLKPQNILINRDGVLKLADFGLARAFGIPLR--TYTHEVVTLWYRAPEILLGSK--  174 (282)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCChheEEEcCCCCEEEecCCcccccCCCcc--ccCccccCcCcCChHHhcCCc--
Confidence            689999999999999999998 999999999999999999999999876533221  112234567799999987652  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---------------C---CCCCCC-------CCCCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---------------G---SGLRPD-------TSSLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---------------~---~~~~p~-------~~~~~~~  159 (423)
                      ..+.++||||||+++||+++|..||....  ..+.+..+..               .   ....+.       ......+
T Consensus       175 ~~~~~~Dv~slG~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (282)
T cd07829         175 HYSTAVDIWSVGCIFAEMITGKPLFPGDS--EIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLD  252 (282)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhccccc
Confidence            23889999999999999999999996432  1122111110               0   000000       0011346


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..+.+++.+||..+|++||++.+++.
T Consensus       253 ~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         253 PEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             HHHHHHHHHhhccCcccCCCHHHHhh
Confidence            78999999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.87  E-value=2.7e-22  Score=197.64  Aligned_cols=157  Identities=15%  Similarity=0.192  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++........ .......|++.|+|||++.+..  
T Consensus       104 ~~~~~~qi~~~L~~lH~~~ii-HrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~  181 (331)
T cd05624         104 ARFYIAEMVLAIHSIHQLHYV-HRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT-VQSSVAVGTPDYISPEILQAMEDG  181 (331)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eccCchHHEEEcCCCCEEEEeccceeeccCCCc-eeeccccCCcccCCHHHHhccccC
Confidence            467889999999999999998 999999999999999999999999875432221 1123356899999999987521  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-C-CCCCCCCCchHHHHHHHHHhhhcCCCC--CC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-L-RPDTSSLDCAPSIIACMRTCWEEDPEL--RP  178 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-~-~p~~~~~~~~~~l~~Li~~C~~~dP~~--RP  178 (423)
                      ....+.++|||||||++|||++|+.||...  ...+....+..... . .|. ....+++++.+++.+|+..++..  |+
T Consensus       182 ~~~~~~~~DiwSlGvil~ell~g~~Pf~~~--~~~~~~~~i~~~~~~~~~p~-~~~~~~~~~~~li~~ll~~~~~~~~~~  258 (331)
T cd05624         182 MGKYGPECDWWSLGVCMYEMLYGETPFYAE--SLVETYGKIMNHEERFQFPS-HITDVSEEAKDLIQRLICSRERRLGQN  258 (331)
T ss_pred             CCCCCCcccEEeeehhhhhhhhCCCCccCC--CHHHHHHHHHcCCCcccCCC-ccccCCHHHHHHHHHHccCchhhcCCC
Confidence            113478999999999999999999999743  33455555544321 1 121 12357889999999999865543  45


Q ss_pred             CHHHHHHH
Q psy1840         179 DLRFVHHK  186 (423)
Q Consensus       179 t~~~I~~~  186 (423)
                      ++.++++.
T Consensus       259 ~~~~~~~h  266 (331)
T cd05624         259 GIEDFKKH  266 (331)
T ss_pred             CHHHHhcC
Confidence            77776543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.87  E-value=1.2e-21  Score=187.48  Aligned_cols=153  Identities=20%  Similarity=0.274  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+++++ |+||+|+||+++.++.++|+|||++........   .....++..|+|||.+....  
T Consensus       101 ~~~~~~~l~~~l~~Lh~~~i~-H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~~~aPE~~~~~~--  174 (283)
T cd07830         101 IRSIIYQILQGLAHIHKHGFF-HRDLKPENLLVSGPEVVKIADFGLAREIRSRPP---YTDYVSTRWYRAPEILLRST--  174 (283)
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCChhhEEEcCCCCEEEeecccceeccCCCC---cCCCCCcccccCceeeecCc--
Confidence            689999999999999999998 999999999999999999999999875533221   12345677899999886533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-------------------CCCCCCC-------CCCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-------------------SGLRPDT-------SSLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-------------------~~~~p~~-------~~~~~  158 (423)
                      ..+.++|+||||++++|+++|..||.....  .+....+...                   ....+..       .....
T Consensus       175 ~~~~~~Di~s~G~~l~el~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (283)
T cd07830         175 SYSSPVDIWALGCIMAELYTLRPLFPGSSE--IDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNA  252 (283)
T ss_pred             CcCCccchhhHHHHHHHHHhCCCccCCCCh--HHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccC
Confidence            238899999999999999999999864321  1111111100                   0000000       00123


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +..+.+++.+||+.+|++||++.+++.
T Consensus       253 ~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         253 SPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             CHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            578999999999999999999999865

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0986|consensus

Probab=99.87  E-value=2e-22  Score=195.45  Aligned_cols=148  Identities=24%  Similarity=0.313  Sum_probs=119.9

Q ss_pred             hHHH-HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          22 PIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        22 p~~~-l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ++.+ +-.+.+|+.||+|||..+|+ .|||||+|||+|++|+++|+|.|++..+......   ....||..|||||++.+
T Consensus       285 ~e~ra~FYAAEi~cGLehlH~~~iV-YRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~---~~rvGT~GYMAPEvl~n  360 (591)
T KOG0986|consen  285 DEQRARFYAAEIICGLEHLHRRRIV-YRDLKPENILLDDHGHVRISDLGLAVEIPEGKPI---RGRVGTVGYMAPEVLQN  360 (591)
T ss_pred             chHHHHHHHHHHHhhHHHHHhccee-eccCChhheeeccCCCeEeeccceEEecCCCCcc---ccccCcccccCHHHHcC
Confidence            3444 56699999999999999998 9999999999999999999999998766544332   33489999999999998


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      +.|   +.+.|-||+||++|||+.|+.||....  ...+++-+++...    +...+..++++...+.+..|+.||.+|.
T Consensus       361 e~Y---~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~----~~ey~~kFS~eakslc~~LL~Kdp~~RL  433 (591)
T KOG0986|consen  361 EVY---DFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLED----PEEYSDKFSEEAKSLCEGLLTKDPEKRL  433 (591)
T ss_pred             Ccc---cCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcc----hhhcccccCHHHHHHHHHHHccCHHHhc
Confidence            876   999999999999999999999996432  2234555555443    2233357899999999999999999996


Q ss_pred             CH
Q psy1840         179 DL  180 (423)
Q Consensus       179 t~  180 (423)
                      ..
T Consensus       434 Gc  435 (591)
T KOG0986|consen  434 GC  435 (591)
T ss_pred             cC
Confidence            43

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=2.6e-22  Score=219.53  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-------------------ccEEEeccCCcccccCCCc------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-------------------WVLQIADFGLHAFKAGQDE------   79 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-------------------~~vKL~DFGla~~~~~~~~------   79 (423)
                      .+.++.||+.||.|||++||+ ||||||+||||+..                   +.+|++|||+++.......      
T Consensus        82 ~~~i~~qi~~al~~lH~~gIv-HrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~  160 (793)
T PLN00181         82 CFHVFRQIVEIVNAAHSQGIV-VHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKL  160 (793)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-eccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhh
Confidence            679999999999999999988 99999999999654                   4455666666543211000      


Q ss_pred             --------ccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCC
Q psy1840          80 --------TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP  151 (423)
Q Consensus        80 --------~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p  151 (423)
                              ........||+.|+|||++.+..+   +.++|||||||++|||++|..|+...    ......+....  .|
T Consensus       161 ~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~---~~~sDVwSlGviL~ELl~~~~~~~~~----~~~~~~~~~~~--~~  231 (793)
T PLN00181        161 EEVKKQPFPMKQILAMEMSWYTSPEEDNGSSS---NCASDVYRLGVLLFELFCPVSSREEK----SRTMSSLRHRV--LP  231 (793)
T ss_pred             hccccCCCcccccccCCCcceEChhhhccCCC---CchhhhhhHHHHHHHHhhCCCchhhH----HHHHHHHHHhh--cC
Confidence                    000112357888999999987665   89999999999999999988887421    12222222211  11


Q ss_pred             CCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       152 ~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .... ...+....++.+||+.+|.+||++.+|++.
T Consensus       232 ~~~~-~~~~~~~~~~~~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        232 PQIL-LNWPKEASFCLWLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             hhhh-hcCHHHHHHHHHhCCCChhhCcChHHHhhc
Confidence            1111 123456788999999999999999999763

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.87  E-value=9.5e-22  Score=189.75  Aligned_cols=154  Identities=20%  Similarity=0.254  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ..++.||+.||+|||+++++ ||||+|+||+++. ++.+||+|||++.......  .......++..|+|||.+.+..  
T Consensus       105 ~~~~~qi~~aL~~LH~~~i~-H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~--  179 (294)
T PLN00009        105 KTYLYQILRGIAYCHSHRVL-HRDLKPQNLLIDRRTNALKLADFGLARAFGIPV--RTFTHEVVTLWYRAPEILLGSR--  179 (294)
T ss_pred             HHHHHHHHHHHHHHHhCCee-CCCCCcceEEEECCCCEEEEcccccccccCCCc--cccccCceeecccCHHHHhCCC--
Confidence            47899999999999999988 9999999999985 5679999999986543221  1112335677899999886533  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--CCC--------------------CCCC---CCCCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--GSG--------------------LRPD---TSSLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--~~~--------------------~~p~---~~~~~~~  159 (423)
                      ..+.++||||||+++|++++|..||...  +..+.+..+..  +.+                    ..+.   ......+
T Consensus       180 ~~~~~~Dv~slG~i~~~l~tg~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (294)
T PLN00009        180 HYSTPVDIWSVGCIFAEMVNQKPLFPGD--SEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLE  257 (294)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCC
Confidence            2378999999999999999999999642  22222222110  000                    0000   0012467


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +++.+++.+||+.+|++||++.++++.
T Consensus       258 ~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        258 PAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             hHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            889999999999999999999998763

>KOG1025|consensus

Probab=99.87  E-value=8e-22  Score=202.54  Aligned_cols=162  Identities=23%  Similarity=0.404  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.|+.||++||.|||.++++ ||||-.+||||.....+||+|||+++.+.............-.+.|||-|.++...+
T Consensus       799 ~lLnw~~QIAkgM~YLe~qrlV-HrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~  877 (1177)
T KOG1025|consen  799 DLLNWCYQIAKGMKYLEEQRLV-HRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKY  877 (1177)
T ss_pred             HHHHHHHHHHHHHHHHHhcchh-hhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCC
Confidence            3589999999999999999998 999999999999999999999999998765544333333334456999999987765


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||.+||++| |..||.  .++.+++-..++.+..+..   +..|+-++..+|.+||..|+..||+|++
T Consensus       878 ---thqSDVWsfGVtiWElmTFGa~Py~--gi~~~eI~dlle~geRLsq---PpiCtiDVy~~mvkCwmid~~~rp~fke  949 (1177)
T KOG1025|consen  878 ---THQSDVWSFGVTIWELMTFGAKPYD--GIPAEEIPDLLEKGERLSQ---PPICTIDVYMVMVKCWMIDADSRPTFKE  949 (1177)
T ss_pred             ---CchhhhhhhhhhHHHHHhcCCCccC--CCCHHHhhHHHhccccCCC---CCCccHHHHHHHHHHhccCcccCccHHH
Confidence               999999999999999997 889997  4667888888887765322   2368999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q psy1840         183 VHHKLKEMNAGL  194 (423)
Q Consensus       183 I~~~L~~i~~~~  194 (423)
                      +...+.++....
T Consensus       950 l~~~fs~~ardp  961 (1177)
T KOG1025|consen  950 LAEEFSRMARDP  961 (1177)
T ss_pred             HHHHHHHHhcCc
Confidence            999988876654

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=9.9e-22  Score=186.65  Aligned_cols=152  Identities=17%  Similarity=0.281  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-ccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+.+++ |+||||+||+++.++.++|+|||+++....... ........++..|+|||.+.+...
T Consensus       108 ~~~~~~~i~~al~~LH~~~i~-H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  186 (264)
T cd06653         108 TRRYTRQILQGVSYLHSNMIV-HRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGY  186 (264)
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCC
Confidence            468999999999999999987 999999999999999999999999875432111 111123457888999999987544


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|+|||||++|++++|+.||...  ...+.+..+... +.++. .+...++.+.+++.+||. +|..||+..++
T Consensus       187 ---~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~-~~~~~-~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~  258 (264)
T cd06653         187 ---GRKADVWSVACTVVEMLTEKPPWAEY--EAMAAIFKIATQ-PTKPM-LPDGVSDACRDFLKQIFV-EEKRRPTAEFL  258 (264)
T ss_pred             ---CccccHHHHHHHHHHHHhCCCCCCcc--CHHHHHHHHHcC-CCCCC-CCcccCHHHHHHHHHHhc-CcccCccHHHH
Confidence               78999999999999999999999743  222222232221 12222 234578899999999999 57999999987


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      +.
T Consensus       259 ~~  260 (264)
T cd06653         259 LR  260 (264)
T ss_pred             hc
Confidence            64

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.87  E-value=1.6e-21  Score=184.59  Aligned_cols=149  Identities=21%  Similarity=0.395  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.|++ |+||+|+||+++. +.+||+|||++........  ......++..|+|||.+.+... 
T Consensus       108 ~~~~~~~l~~~l~~lH~~~i~-h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~~pe~~~~~~~-  182 (260)
T cd08222         108 VCEWFIQLLLGVHYMHQRRIL-HRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCD--LATTFTGTPYYMSPEALKHQGY-  182 (260)
T ss_pred             HHHHHHHHHHHHHHHHHcCcc-ccCCChhheEeec-CCEeecccCceeecCCCcc--cccCCCCCcCccCHHHHccCCC-
Confidence            578999999999999999998 9999999999986 5699999999876533221  1223457788999998876544 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|+||||+++|++++|..||..  .........+..+.  .+.. ...++.++.+++.+||..+|++||++.+++
T Consensus       183 --~~~~Dv~slG~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  255 (260)
T cd08222         183 --DSKSDIWSLGCILYEMCCLAHAFEG--QNFLSVVLRIVEGP--TPSL-PETYSRQLNSIMQSMLNKDPSLRPSAAEIL  255 (260)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHcCC--CCCC-cchhcHHHHHHHHHHhcCChhhCcCHHHHh
Confidence              7889999999999999999999963  23334444443322  2222 235788999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       256 ~  256 (260)
T cd08222         256 R  256 (260)
T ss_pred             h
Confidence            5

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.87  E-value=2e-21  Score=182.37  Aligned_cols=146  Identities=21%  Similarity=0.252  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.|+.|||+.+++ |+||+|+||+++.++.++|+|||++........  ......++..|++||...+... 
T Consensus        95 ~~~~~~qi~~~l~~lh~~~~~-H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~-  170 (250)
T cd05123          95 ARFYAAEIVLALEYLHSLGII-YRDLKPENILLDADGHIKLTDFGLAKELSSEGS--RTNTFCGTPEYLAPEVLLGKGY-  170 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCce-ecCCCcceEEEcCCCcEEEeecCcceecccCCC--cccCCcCCccccChHHhCCCCC-
Confidence            578999999999999999998 999999999999999999999999876533221  1234456778999999876554 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                        +.++|+||||+++|++++|+.||...  ...+....+.......    +...+..+.+++++||..||++||++.+
T Consensus       171 --~~~~D~~slG~~~~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~----~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         171 --GKAVDWWSLGVLLYEMLTGKPPFYAE--DRKEIYEKILKDPLRF----PEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             --CchhhHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHhcCCCCC----CCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence              88999999999999999999999643  3345555555432211    2245789999999999999999999943

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.87  E-value=7.1e-22  Score=189.27  Aligned_cols=154  Identities=21%  Similarity=0.266  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||++++++.+||+|||++........  ......++..|++||.+.+..  
T Consensus       102 ~~~~~~qi~~~l~~lH~~~i~-h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~--  176 (284)
T cd07836         102 VKSFTYQLLKGIAFCHENRVL-HRDLKPQNLLINKRGELKLADFGLARAFGIPVN--TFSNEVVTLWYRAPDVLLGSR--  176 (284)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eCCCCHHHEEECCCCcEEEeecchhhhhcCCcc--ccccccccccccChHHhcCCC--
Confidence            679999999999999999988 999999999999999999999999865432211  112334677899999886543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---------------CCCCCCCCC----------CCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---------------GSGLRPDTS----------SLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---------------~~~~~p~~~----------~~~~~  159 (423)
                      ..+.++||||||+++|++++|..||.+..  ..+....+..               ........+          ...++
T Consensus       177 ~~~~~~Dv~slG~~l~~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (284)
T cd07836         177 TYSTSIDIWSVGCIMAEMITGRPLFPGTN--NEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHAD  254 (284)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcC
Confidence            23789999999999999999999997532  2222222111               000000000          01346


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..+.+++.+||+.||.+||++.++++
T Consensus       255 ~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         255 PLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             cHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            78899999999999999999999874

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG4717|consensus

Probab=99.87  E-value=6.9e-22  Score=194.08  Aligned_cols=148  Identities=18%  Similarity=0.288  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE-cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLI-DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl-d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      -+...||+.++.|+|+-.++ ||||||+||++ ..-|-|||+|||++..+...   ....+.+|+..|.|||++.|..| 
T Consensus       121 ~kYF~QI~~AI~YCHqLHVV-HRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG---~kL~TsCGSLAYSAPEILLGDsY-  195 (864)
T KOG4717|consen  121 KKYFAQIVHAISYCHQLHVV-HRDLKPENVVFFEKLGLVKLTDFGFSNKFQPG---KKLTTSCGSLAYSAPEILLGDSY-  195 (864)
T ss_pred             HHHHHHHHHHHHHHhhhhhh-cccCCcceeEEeeecCceEeeeccccccCCCc---chhhcccchhhccCchhhhcCcc-
Confidence            47889999999999999988 99999999865 67899999999997654322   23457799999999999999876 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                       ..+++||||+|+|||.+++|+.||..  ..+.+-+..|.+.++.-|.    .++.+..+||..||..||.+|-+..+|.
T Consensus       196 -DAPAVDiWSLGVILyMLVCGq~PFqe--ANDSETLTmImDCKYtvPs----hvS~eCrdLI~sMLvRdPkkRAslEeI~  268 (864)
T KOG4717|consen  196 -DAPAVDIWSLGVILYMLVCGQPPFQE--ANDSETLTMIMDCKYTVPS----HVSKECRDLIQSMLVRDPKKRASLEEIV  268 (864)
T ss_pred             -CCcchhhhHHHHHHHHHHhCCCcccc--ccchhhhhhhhcccccCch----hhhHHHHHHHHHHHhcCchhhccHHHHh
Confidence             47899999999999999999999984  3456677777777665554    4688999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      .
T Consensus       269 s  269 (864)
T KOG4717|consen  269 S  269 (864)
T ss_pred             c
Confidence            5

>KOG1006|consensus

Probab=99.87  E-value=5.4e-23  Score=187.64  Aligned_cols=154  Identities=21%  Similarity=0.278  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      .|..-.+.||+||-.. .|| |||+||+|||+|..|.+||||||++..+.++.   ..+...|...|||||.+....- -
T Consensus       171 ~ItvatV~AL~yLK~~lkiI-HRDvKPSNILldr~G~vKLCDFGIcGqLv~Si---AkT~daGCrpYmAPERi~p~~~-g  245 (361)
T KOG1006|consen  171 HITVATVDALDYLKEELKII-HRDVKPSNILLDRHGDVKLCDFGICGQLVDSI---AKTVDAGCRPYMAPERIDPSDK-G  245 (361)
T ss_pred             heeeeehhHHHHHHHHhhhh-hccCChhheEEecCCCEeeecccchHhHHHHH---HhhhccCCccccChhccCCccC-C
Confidence            4455567899999876 566 99999999999999999999999987654332   2234467778999999875432 3


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC--CCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT--SSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~--~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      +.-++|||||||+++|+.||..||..... .-+.+..+..|.+.....  ....++..+..++..|+-+|-.+||.+.++
T Consensus       246 yDiRSDvWSLGITL~EvAtG~fPyr~w~s-vfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~L  324 (361)
T KOG1006|consen  246 YDIRSDVWSLGITLYEVATGNFPYRKWDS-VFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDL  324 (361)
T ss_pred             cchhhhhhhhcceEeeeecCCCCcchHHH-HHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhh
Confidence            47899999999999999999999975422 333444444444332221  123578899999999999999999999988


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       325 k~~  327 (361)
T KOG1006|consen  325 KKF  327 (361)
T ss_pred             hcC
Confidence            653

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.86  E-value=1.1e-21  Score=194.09  Aligned_cols=156  Identities=19%  Similarity=0.273  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++ .++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       116 ~~~~~~qi~~aL~~LH~~giv-H~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  194 (342)
T cd07854         116 ARLFMYQLLRGLKYIHSANVL-HRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPN  194 (342)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCcc
Confidence            578999999999999999998 999999999997 4567899999998754322111 1112235677899999875533


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC----------------------CCCCCC----CCC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS----------------------GLRPDT----SSL  156 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~----------------------~~~p~~----~~~  156 (423)
                        ..+.++|||||||++|+|++|+.||...  ...+....+....                      ...+..    ...
T Consensus       195 --~~~~~~DiwSlGvil~el~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (342)
T cd07854         195 --NYTKAIDMWAAGCIFAEMLTGKPLFAGA--HELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLP  270 (342)
T ss_pred             --ccCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHcc
Confidence              2378999999999999999999999632  1111111111100                      000000    012


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..+.++.+++.+||+.||++||++.+++.
T Consensus       271 ~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         271 GVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             CCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence            46778999999999999999999999975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.86  E-value=7.7e-22  Score=195.26  Aligned_cols=152  Identities=20%  Similarity=0.260  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......     .....++..|+|||.+.+..  
T Consensus       120 ~~~~~~ql~~aL~~LH~~gi~-H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~--  191 (343)
T cd07851         120 IQFLVYQILRGLKYIHSAGII-HRDLKPSNIAVNEDCELKILDFGLARHTDDE-----MTGYVATRWYRAPEIMLNWM--  191 (343)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHeEECCCCCEEEcccccccccccc-----ccCCcccccccCHHHHhCCC--
Confidence            578999999999999999988 9999999999999999999999998754322     12345677899999886532  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-----------------------CCC--CC--CCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-----------------------LRP--DT--SSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-----------------------~~p--~~--~~~~  157 (423)
                      ..+.++||||||+++||+++|+.||....  ..+....+.....                       ..+  ..  ....
T Consensus       192 ~~~~~~DvwslGv~l~elltg~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T cd07851         192 HYNQTVDIWSVGCIMAELLTGKTLFPGSD--HIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSG  269 (343)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhcc
Confidence            23789999999999999999999996432  2222222211100                       000  00  0123


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .++.+.+++.+||+.+|++|||+.+|+..
T Consensus       270 ~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         270 ANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             CCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence            57889999999999999999999998763

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.86  E-value=1.9e-21  Score=187.28  Aligned_cols=154  Identities=19%  Similarity=0.256  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||+|+||+++.++.+||+|||++....... ........++..|+|||.+..... 
T Consensus       107 ~~~~~~qi~~al~~lH~~~i~-H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~-  183 (290)
T cd05613         107 VQIYSGEIVLALEHLHKLGII-YRDIKLENILLDSNGHVVLTDFGLSKEFHEDE-VERAYSFCGTIEYMAPDIVRGGDG-  183 (290)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccCCCHHHeEECCCCCEEEeeCccceeccccc-ccccccccCCcccCChhhccCCCC-
Confidence            456777999999999999988 99999999999999999999999987543221 111234457888999999875321 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP----  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP----  178 (423)
                      ..+.++||||||+++|++++|..||....  ....++...+.......    +..+++.+.+++++||+.+|++||    
T Consensus       184 ~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~~l~~~p~~R~~~~~  259 (290)
T cd05613         184 GHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPY----PQEMSALAKDIIQRLLMKDPKKRLGCGP  259 (290)
T ss_pred             CCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCCC----CccCCHHHHHHHHHHhcCCHHHhcCCCC
Confidence            23788999999999999999999996322  22344444444332221    234788999999999999999997    


Q ss_pred             -CHHHHHH
Q psy1840         179 -DLRFVHH  185 (423)
Q Consensus       179 -t~~~I~~  185 (423)
                       +..++..
T Consensus       260 ~~~~~l~~  267 (290)
T cd05613         260 SDADEIKK  267 (290)
T ss_pred             CCHHHHHc
Confidence             5555543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.86  E-value=1.1e-21  Score=192.96  Aligned_cols=154  Identities=19%  Similarity=0.271  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||+|+||+++.++.+||+|||++......     .....++..|+|||.+.+..  
T Consensus       110 ~~~~~~ql~~aL~~LH~~~ii-H~dl~p~Nili~~~~~~~l~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~--  181 (328)
T cd07856         110 IQYFLYQILRGLKYVHSAGVV-HRDLKPSNILINENCDLKICDFGLARIQDPQ-----MTGYVSTRYYRAPEIMLTWQ--  181 (328)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEeECCCCCEEeCccccccccCCC-----cCCCcccccccCceeeeccC--
Confidence            457899999999999999988 9999999999999999999999998643221     12335677899999876532  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCC-------------ChHHHHHHHhc------------CCCCCCCCCCCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-------------TDEEIITSVTQ------------GSGLRPDTSSLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~-------------~~~~i~~~i~~------------~~~~~p~~~~~~~~  159 (423)
                      ..+.++||||||+++|++++|+.||.....             ...++...+..            ............++
T Consensus       182 ~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (328)
T cd07856         182 KYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNAD  261 (328)
T ss_pred             CcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCC
Confidence            238899999999999999999999964221             00111111100            00000000112467


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .++.++|++||+.+|++||++.+++..
T Consensus       262 ~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         262 PSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            899999999999999999999998654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.86  E-value=1.3e-21  Score=193.80  Aligned_cols=152  Identities=18%  Similarity=0.236  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......     .....++..|+|||.+.+..  
T Consensus       122 ~~~i~~qi~~aL~~LH~~~iv-H~dlkp~NIll~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~--  193 (345)
T cd07877         122 VQFLIYQILRGLKYIHSADII-HRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVATRWYRAPEIMLNWM--  193 (345)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCCChHHEEEcCCCCEEEeccccccccccc-----ccccccCCCccCHHHHhCcc--
Confidence            567899999999999999988 9999999999999999999999997654221     12345678899999886532  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------------CCCCCCC----CCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------------SGLRPDT----SSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------------~~~~p~~----~~~~  157 (423)
                      ..+.++|||||||++||+++|+.||....  .......+...                       ....+..    ....
T Consensus       194 ~~~~~~DvwslG~il~el~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (345)
T cd07877         194 HYNQTVDIWSVGCIMAELLTGRTLFPGTD--HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG  271 (345)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCC
Confidence            23789999999999999999999996422  11111111110                       0001110    0123


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .++++.+++.+|++.||.+||++.+++..
T Consensus       272 ~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         272 ANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             CCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence            57789999999999999999999998764

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.86  E-value=1.6e-21  Score=186.02  Aligned_cols=151  Identities=18%  Similarity=0.279  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc------------------cccccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET------------------GQERKL   86 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~------------------~~~~~~   86 (423)
                      ...++.|++.||.|||+.|++ ||||+|+||+++.++.++++|||++.........                  ......
T Consensus       104 ~~~i~~ql~~~l~~Lh~~~~~-H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (280)
T cd05581         104 TRFYAAEILLALEYLHSKGII-HRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASF  182 (280)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccc
Confidence            689999999999999999987 9999999999999999999999998765432211                  112234


Q ss_pred             cCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHH
Q psy1840          87 RRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACM  166 (423)
Q Consensus        87 ~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li  166 (423)
                      .++..|+|||.......   +.++|+||||++++++++|..||....  .......+.......|    ...++.+.+++
T Consensus       183 ~~~~~~~~Pe~~~~~~~---~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~li  253 (280)
T cd05581         183 VGTAEYVSPELLNEKPA---GKSSDLWALGCIIYQMLTGKPPFRGSN--EYLTFQKILKLEYSFP----PNFPPDAKDLI  253 (280)
T ss_pred             cCCccccCHHHhCCCCC---ChhhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHhcCCCCC----CccCHHHHHHH
Confidence            56778999998876554   889999999999999999999997432  2333344433222222    24688999999


Q ss_pred             HHhhhcCCCCCCCH----HHHHH
Q psy1840         167 RTCWEEDPELRPDL----RFVHH  185 (423)
Q Consensus       167 ~~C~~~dP~~RPt~----~~I~~  185 (423)
                      ++||+.+|++||++    .+++.
T Consensus       254 ~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         254 EKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             HHHhcCCHhhCCCcccCHHHHhc
Confidence            99999999999999    66654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.86  E-value=2.1e-21  Score=191.20  Aligned_cols=157  Identities=18%  Similarity=0.206  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc------------ccccccccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE------------TGQERKLRRRKLY   92 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~------------~~~~~~~~gt~~y   92 (423)
                      ...++.|++.||.|||++|++ ||||+|+||+++.++.+||+|||++........            ........++..|
T Consensus       121 ~~~~~~ql~~aL~~LH~~~i~-H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  199 (335)
T PTZ00024        121 VKCILLQILNGLNVLHKWYFM-HRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWY  199 (335)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cccccHHHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCC
Confidence            578999999999999999998 999999999999999999999999875431110            0111223456789


Q ss_pred             cCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc----CCCC-----------------CC
Q psy1840          93 KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ----GSGL-----------------RP  151 (423)
Q Consensus        93 ~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~----~~~~-----------------~p  151 (423)
                      +|||.+.+..  ..+.++|+|||||++|||++|..||....  ..+....+..    ....                 .+
T Consensus       200 ~aPE~~~~~~--~~~~~~Dv~slG~~l~el~tg~~p~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (335)
T PTZ00024        200 RAPELLMGAE--KYHFAVDMWSVGCIFAELLTGKPLFPGEN--EIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKP  275 (335)
T ss_pred             CCChhcccCC--CCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCc
Confidence            9999987643  23789999999999999999999997432  2222222211    0000                 00


Q ss_pred             C---CCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         152 D---TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       152 ~---~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .   .....++..+.+++.+||+.+|++||++.+++..
T Consensus       276 ~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~  313 (335)
T PTZ00024        276 KDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKH  313 (335)
T ss_pred             ccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcC
Confidence            0   0012357789999999999999999999999864

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.86  E-value=1.5e-21  Score=182.86  Aligned_cols=137  Identities=18%  Similarity=0.162  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.++++|||.+.......     ....++..|+|||.+.+... 
T Consensus        87 ~~~~~~ql~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~-  159 (237)
T cd05576          87 VKRWAAEMVVALDALHREGIV-CRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC-----DGEAVENMYCAPEVGGISEE-  159 (237)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccCCCHHHEEEcCCCCEEEecccchhcccccc-----ccCCcCccccCCcccCCCCC-
Confidence            578999999999999999988 99999999999999999999999875543221     22345667999999876544 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|+||+|+++||+++|..|+....   ..+    ...  ..... +..+++.+.+++.+||+.||++||++
T Consensus       160 --~~~~DvwslG~il~el~~g~~~~~~~~---~~~----~~~--~~~~~-~~~~~~~~~~li~~~l~~dp~~R~~~  223 (237)
T cd05576         160 --TEACDWWSLGAILFELLTGKTLVECHP---SGI----NTH--TTLNI-PEWVSEEARSLLQQLLQFNPTERLGA  223 (237)
T ss_pred             --CchhhHHHHHHHHHHHHHCcchhhcCc---hhc----ccc--cccCC-cccCCHHHHHHHHHHccCCHHHhcCC
Confidence              789999999999999999998875321   110    000  01111 23467899999999999999999986

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.86  E-value=1.2e-21  Score=194.01  Aligned_cols=158  Identities=18%  Similarity=0.233  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......     .....++..|+|||.+.+..  
T Consensus       120 ~~~i~~qi~~al~~LH~~gi~-H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~--  191 (343)
T cd07880         120 IQFLVYQMLKGLKYIHAAGII-HRDLKPGNLAVNEDCELKILDFGLARQTDSE-----MTGYVVTRWYRAPEVILNWM--  191 (343)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEeecccccccccC-----ccccccCCcccCHHHHhCCC--
Confidence            568899999999999999988 9999999999999999999999998754321     12345677899999987532  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC------------------------CCCCCC---CCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG------------------------SGLRPD---TSSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~------------------------~~~~p~---~~~~~  157 (423)
                      ..+.++|+||||+++|++++|..||.....  ......+...                        ....+.   .....
T Consensus       192 ~~~~~~Di~slG~ll~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T cd07880         192 HYTQTVDIWSVGCIMAEMLTGKPLFKGHDH--LDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPN  269 (343)
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccC
Confidence            238899999999999999999999964321  1111111100                        000000   01135


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHH--HHHHHhh
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHH--KLKEMNA  192 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~--~L~~i~~  192 (423)
                      +++.+.+++.+|++.||++|||+.+++.  .++....
T Consensus       270 ~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~  306 (343)
T cd07880         270 ANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHD  306 (343)
T ss_pred             CChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcC
Confidence            6778999999999999999999999984  4444433

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.86  E-value=5.5e-22  Score=208.13  Aligned_cols=156  Identities=13%  Similarity=0.079  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ..++.||+.||.|||+.+++ ||||||+|||++. ++.+||+|||+++....... .......+++.|+|||.+......
T Consensus       258 ~~i~~qll~aL~yLH~~gIi-HRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~-~~~~~~~~t~~Y~APE~~~~~~~~  335 (566)
T PLN03225        258 QTIMRQILFALDGLHSTGIV-HRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGIN-YIPKEFLLDPRYAAPEQYIMSTQT  335 (566)
T ss_pred             HHHHHHHHHHHHHHHHCCEE-eCcCCHHHEEEeCCCCcEEEEeCCCccccccccc-cCCcccccCCCccChHHhhccCCC
Confidence            36899999999999999988 9999999999985 68999999999875432211 122345778899999976432210


Q ss_pred             -------------------CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC------------CCCCCC
Q psy1840         105 -------------------RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS------------GLRPDT  153 (423)
Q Consensus       105 -------------------~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~------------~~~p~~  153 (423)
                                         .++.++|||||||++|||+++..|+...   ...+...+....            ...+..
T Consensus       336 ~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  412 (566)
T PLN03225        336 PSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSN---LIQFNRQLKRNDYDLVAWRKLVEPRASPDL  412 (566)
T ss_pred             CCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchH---HHHHHHHHHhcCCcHHHHHHhhccccchhh
Confidence                               1235679999999999999877665321   111111111110            000000


Q ss_pred             C-----CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         154 S-----SLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       154 ~-----~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .     .........+|+.+|++.||++|||+.++++.
T Consensus       413 ~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~H  450 (566)
T PLN03225        413 RRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALAH  450 (566)
T ss_pred             hhhhhhccccchHHHHHHHHHccCCcccCCCHHHHhCC
Confidence            0     01123345689999999999999999999875

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.85  E-value=5.5e-21  Score=177.13  Aligned_cols=152  Identities=23%  Similarity=0.285  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.+++.|+.|||+.+++ |+||+|+||+++.++.++|+|||.+.......   ......++..|++||.+.+... 
T Consensus        89 ~~~~~~~l~~~l~~lh~~~i~-h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~~~~pE~~~~~~~-  163 (244)
T smart00220       89 ARFYARQILSALEYLHSNGII-HRDLKPENILLDEDGHVKLADFGLARQLDPGG---LLTTFVGTPEYMAPEVLLGKGY-  163 (244)
T ss_pred             HHHHHHHHHHHHHHHHHcCee-cCCcCHHHeEECCCCcEEEccccceeeecccc---ccccccCCcCCCCHHHHccCCC-
Confidence            678999999999999999988 99999999999999999999999987654332   2234456778999999876544 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||||++++++++|..||... .....+...+........ .....++.++.+++.+||..+|++||++.+++
T Consensus       164 --~~~~Di~slG~~l~~l~~~~~p~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~  239 (244)
T smart00220      164 --GKAVDVWSLGVILYELLTGKPPFPGD-DQLLELFKKIGKPKPPFP-PPEWKISPEAKDLIRKLLVKDPEKRLTAEEAL  239 (244)
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHhccCCCCc-cccccCCHHHHHHHHHHccCCchhccCHHHHh
Confidence              78999999999999999999999642 233444555444322211 11112788999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       240 ~  240 (244)
T smart00220      240 Q  240 (244)
T ss_pred             h
Confidence            5

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0614|consensus

Probab=99.85  E-value=1.3e-21  Score=191.89  Aligned_cols=149  Identities=17%  Similarity=0.260  Sum_probs=118.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccc
Q psy1840          19 FNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        19 ~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l   98 (423)
                      |.-+..+ -++.-+.+|++|||++||| .|||||+|+++|.+|-+||.|||+++.+...   ..+.+++||+.|.|||++
T Consensus       517 Fdd~tar-F~~acv~EAfeYLH~k~iI-YRDLKPENllLd~~Gy~KLVDFGFAKki~~g---~KTwTFcGTpEYVAPEII  591 (732)
T KOG0614|consen  517 FDDYTAR-FYVACVLEAFEYLHRKGII-YRDLKPENLLLDNRGYLKLVDFGFAKKIGSG---RKTWTFCGTPEYVAPEII  591 (732)
T ss_pred             cccchhh-hhHHHHHHHHHHHHhcCce-eccCChhheeeccCCceEEeehhhHHHhccC---CceeeecCCcccccchhh
Confidence            4443333 3456788999999999999 9999999999999999999999999987543   345789999999999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      .++..   ..++|.||+||++||+++|.+||.+.  ++-.....+..|...  -..+..++....+||++....+|.+|.
T Consensus       592 LnKGH---D~avDyWaLGIli~ELL~G~pPFs~~--dpmktYn~ILkGid~--i~~Pr~I~k~a~~Lik~LCr~~P~ERL  664 (732)
T KOG0614|consen  592 LNKGH---DRAVDYWALGILIYELLTGSPPFSGV--DPMKTYNLILKGIDK--IEFPRRITKTATDLIKKLCRDNPTERL  664 (732)
T ss_pred             hccCc---chhhHHHHHHHHHHHHHcCCCCCCCC--chHHHHHHHHhhhhh--hhcccccchhHHHHHHHHHhcCcHhhh
Confidence            88765   89999999999999999999999743  333344444444211  111235678899999999999999996


Q ss_pred             C
Q psy1840         179 D  179 (423)
Q Consensus       179 t  179 (423)
                      .
T Consensus       665 G  665 (732)
T KOG0614|consen  665 G  665 (732)
T ss_pred             c
Confidence            4

>KOG2052|consensus

Probab=99.85  E-value=2.8e-21  Score=187.43  Aligned_cols=171  Identities=26%  Similarity=0.407  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHh-------CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc--ccccccccCCccc
Q psy1840          22 PIGSISVNTTASVGMIHLHD-------SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE--TGQERKLRRRKLY   92 (423)
Q Consensus        22 p~~~l~i~~qi~~gL~yLH~-------~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~--~~~~~~~~gt~~y   92 (423)
                      +...++++..+|.||+|||.       ++-|.|||||+.||||.+++++-|+|+|++-.......  ........||..|
T Consensus       307 ~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRY  386 (513)
T KOG2052|consen  307 TEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRY  386 (513)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeec
Confidence            35579999999999999996       33456999999999999999999999999865433221  2233567899999


Q ss_pred             cCCccccCCC---CCCCCCccchHHHHHHHHHHHhC----------CCCCCCCCCCh--HHHHHHHhcCCCCCCCCCC--
Q psy1840          93 KAPELLRQPH---LPRGTQKGDVYSFGLVLYEVIGR----------QGPWGHLRMTD--EEIITSVTQGSGLRPDTSS--  155 (423)
Q Consensus        93 ~APE~l~~~~---~~~~s~ksDVyS~Giil~elltg----------~~Pf~~~~~~~--~~i~~~i~~~~~~~p~~~~--  155 (423)
                      ||||++...-   ....-..+||||||.|+||+..+          +.||.+...++  .+-...+.--...+|..++  
T Consensus       387 MAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW  466 (513)
T KOG2052|consen  387 MAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRW  466 (513)
T ss_pred             cChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCccc
Confidence            9999997632   11123569999999999999864          57887542222  2223333333455666553  


Q ss_pred             --CCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhh
Q psy1840         156 --LDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNA  192 (423)
Q Consensus       156 --~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~  192 (423)
                        ..+-..+.++|+.||..||.-|-|+-.|.+.|.++.+
T Consensus       467 ~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  467 KSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             ccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhc
Confidence              3344578889999999999999999999999988864

>KOG3653|consensus

Probab=99.85  E-value=2.9e-21  Score=188.54  Aligned_cols=167  Identities=27%  Similarity=0.418  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHh--------CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCc
Q psy1840          25 SISVNTTASVGMIHLHD--------SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPE   96 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~--------~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE   96 (423)
                      ..+++..+++||+|||.        +.-|+|||||++||||.+++++.|+|||++..+.............||..|||||
T Consensus       309 ~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPE  388 (534)
T KOG3653|consen  309 LCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPE  388 (534)
T ss_pred             HHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHH
Confidence            67999999999999997        3345599999999999999999999999998776555544445578999999999


Q ss_pred             cccCCCCCC---CCCccchHHHHHHHHHHHhCCC------------CCC---CCCCChHHHHHHHhcCCCCCCCCCC---
Q psy1840          97 LLRQPHLPR---GTQKGDVYSFGLVLYEVIGRQG------------PWG---HLRMTDEEIITSVTQGSGLRPDTSS---  155 (423)
Q Consensus        97 ~l~~~~~~~---~s~ksDVyS~Giil~elltg~~------------Pf~---~~~~~~~~i~~~i~~~~~~~p~~~~---  155 (423)
                      ++.+..-..   .-.+.||||+|.|+|||+++..            ||.   +...+.+++.+.+.+. ..||..+.   
T Consensus       389 vLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~k-K~RP~~p~~W~  467 (534)
T KOG3653|consen  389 VLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRK-KQRPKIPDAWR  467 (534)
T ss_pred             HHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhh-ccCCCChhhhh
Confidence            998753111   1256999999999999998743            232   1122334554444432 23444432   


Q ss_pred             -CCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhh
Q psy1840         156 -LDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNA  192 (423)
Q Consensus       156 -~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~  192 (423)
                       ......+.+.+..||+.||+.|.|+.=+.+++.++..
T Consensus       468 ~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~  505 (534)
T KOG3653|consen  468 KHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMM  505 (534)
T ss_pred             cCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhc
Confidence             3445678999999999999999999988888777654

>KOG0690|consensus

Probab=99.85  E-value=2.8e-21  Score=180.76  Aligned_cols=139  Identities=21%  Similarity=0.310  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCCC
Q psy1840          28 VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGT  107 (423)
Q Consensus        28 i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~s  107 (423)
                      ....|+.+|.|||+++|+ .||||.+|.++|.+|++||+|||+++.-.  .......+++||+.|+|||++....+   +
T Consensus       273 YGaEIvsAL~YLHs~~iv-YRDlKLENLlLDkDGHIKitDFGLCKE~I--~~g~t~kTFCGTPEYLAPEVleDnDY---g  346 (516)
T KOG0690|consen  273 YGAEIVSALGYLHSRNIV-YRDLKLENLLLDKDGHIKITDFGLCKEEI--KYGDTTKTFCGTPEYLAPEVLEDNDY---G  346 (516)
T ss_pred             hhHHHHHHhhhhhhCCee-eeechhhhheeccCCceEeeecccchhcc--cccceeccccCChhhcCchhhccccc---c
Confidence            467899999999999998 99999999999999999999999987432  22334468899999999999988766   8


Q ss_pred             CccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         108 QKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       108 ~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      +++|-|.+|+++|||++|+.||..  .+.+.+.+.+.......|.    ..+++...|+...+..||.+|.
T Consensus       347 raVDWWG~GVVMYEMmCGRLPFyn--~dh~kLFeLIl~ed~kFPr----~ls~eAktLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  347 RAVDWWGVGVVMYEMMCGRLPFYN--KDHEKLFELILMEDLKFPR----TLSPEAKTLLSGLLKKDPKKRL  411 (516)
T ss_pred             ceeehhhhhHHHHHHHhccCcccc--cchhHHHHHHHhhhccCCc----cCCHHHHHHHHHHhhcChHhhc
Confidence            999999999999999999999974  3345566666655444443    5788999999999999999994

>KOG0574|consensus

Probab=99.85  E-value=2.8e-22  Score=185.57  Aligned_cols=167  Identities=19%  Similarity=0.327  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .-.++.+-++||+|||...-| |||||..|||++-+|..||+|||++..+.+...  ...+..||+.|||||++..-.+ 
T Consensus       131 Is~iL~~TLKGL~YLH~~~KI-HRDIKAGNILLNT~G~AKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVI~EIGY-  206 (502)
T KOG0574|consen  131 ISAVLRDTLKGLQYLHDLKKI-HRDIKAGNILLNTDGIAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIEEIGY-  206 (502)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH-HhhcccccEEEcccchhhhhhccccchhhhhHH--hhCccccCcccccHHHHHHhcc-
Confidence            346788899999999998877 999999999999999999999999876654332  3357789999999999988766 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCC--CCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS--SLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~--~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                        ..++||||+|+...||..|++||.+..  +-..+-.+..   ..|+..  +..++.++.++++.|+-.+|++|-|+.+
T Consensus       207 --~~~ADIWSLGITaIEMAEG~PPYsDIH--PMRAIFMIPT---~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~  279 (502)
T KOG0574|consen  207 --DTKADIWSLGITAIEMAEGRPPYSDIH--PMRAIFMIPT---KPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALR  279 (502)
T ss_pred             --chhhhHhhhcchhhhhhcCCCCccccc--ccceeEeccC---CCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHH
Confidence              899999999999999999999997532  1111111111   122221  2457889999999999999999999998


Q ss_pred             HHHHHHHHhhhcCCChHHHHH
Q psy1840         183 VHHKLKEMNAGLKANIFDNML  203 (423)
Q Consensus       183 I~~~L~~i~~~~~~~~~d~~~  203 (423)
                      +++.- .+......+++..++
T Consensus       280 L~~H~-FiknA~g~~I~~~~I  299 (502)
T KOG0574|consen  280 LCEHT-FIKNAPGCDIMQLMI  299 (502)
T ss_pred             Hhhhh-hhcCCCcccHHHHHH
Confidence            87753 333333445554443

>KOG0696|consensus

Probab=99.84  E-value=8.1e-21  Score=182.37  Aligned_cols=142  Identities=22%  Similarity=0.385  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ++-.+..|+.||-|||++||| .||||..||++|.+|++||+|||+++.-.  .....+.+++||+-|+|||++...++ 
T Consensus       452 AvFYAaEiaigLFFLh~kgIi-YRDLKLDNvmLd~eGHiKi~DFGmcKEni--~~~~TTkTFCGTPdYiAPEIi~YqPY-  527 (683)
T KOG0696|consen  452 AVFYAAEIAIGLFFLHSKGII-YRDLKLDNVMLDSEGHIKIADFGMCKENI--FDGVTTKTFCGTPDYIAPEIIAYQPY-  527 (683)
T ss_pred             hhhhhHHHHHHhhhhhcCCee-eeeccccceEeccCCceEeeecccccccc--cCCcceeeecCCCcccccceEEeccc-
Confidence            456788999999999999999 99999999999999999999999987432  22233467899999999999987765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                        +.++|-||||++||||+.|+.||.+  .+.+++.+.+.......|.    ..+.+...+.+..+...|.+|.
T Consensus       528 --gksvDWWa~GVLLyEmlaGQpPFdG--eDE~elF~aI~ehnvsyPK----slSkEAv~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  528 --GKSVDWWAFGVLLYEMLAGQPPFDG--EDEDELFQAIMEHNVSYPK----SLSKEAVAICKGLLTKHPGKRL  593 (683)
T ss_pred             --ccchhHHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHHHccCcCcc----cccHHHHHHHHHHhhcCCcccc
Confidence              9999999999999999999999985  4567888888775544443    4688999999999999999995

>KOG0984|consensus

Probab=99.84  E-value=2.6e-21  Score=170.87  Aligned_cols=115  Identities=21%  Similarity=0.284  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-CCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-LPR  105 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-~~~  105 (423)
                      +|+..++.||.|||++=-++|||+||+||||+.+|.||+||||++..+.++...   +...|...|||||.+..+. ...
T Consensus       152 kIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAk---t~daGCkpYmaPEri~~e~n~~g  228 (282)
T KOG0984|consen  152 KIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAK---TMDAGCKPYMAPERINPELNQKG  228 (282)
T ss_pred             HhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehhhhHH---HHhcCCCccCChhhcCcccCccc
Confidence            789999999999999843449999999999999999999999998876544321   2245667899999987543 224


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ  145 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~  145 (423)
                      ++-++||||||+.+.||.+++.||..... +-+.+.++..
T Consensus       229 Y~vksDvWSLGItmiElA~lr~PY~~w~t-pF~qLkqvVe  267 (282)
T KOG0984|consen  229 YSVKSDVWSLGITMIEMAILRFPYESWGT-PFQQLKQVVE  267 (282)
T ss_pred             ceeehhhhhhhhhhhhhhhccccccccCC-HHHHHHHHhc
Confidence            58899999999999999999999986544 4444444433

>KOG0610|consensus

Probab=99.84  E-value=1.6e-20  Score=180.79  Aligned_cols=151  Identities=18%  Similarity=0.267  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccC-------C----------------------
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG-------Q----------------------   77 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~-------~----------------------   77 (423)
                      -.+..++.||+|||-.||| .|||||+||||-.+|++-|+||.++.....       .                      
T Consensus       183 FYaAEvl~ALEYLHmlGiv-YRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r  261 (459)
T KOG0610|consen  183 FYAAEVLLALEYLHMLGIV-YRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPR  261 (459)
T ss_pred             HHHHHHHHHHHHHHhhcee-eccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccc
Confidence            4588999999999999999 999999999999999999999988532110       0                      


Q ss_pred             ---C-c---------------------ccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q psy1840          78 ---D-E---------------------TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHL  132 (423)
Q Consensus        78 ---~-~---------------------~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~  132 (423)
                         . .                     ......+.||-.|.|||+++|...   +.++|-|+|||++|||++|..||.+ 
T Consensus       262 ~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GH---gsAVDWWtfGIflYEmLyG~TPFKG-  337 (459)
T KOG0610|consen  262 CLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGH---GSAVDWWTFGIFLYEMLYGTTPFKG-  337 (459)
T ss_pred             hhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCC---CchhhHHHHHHHHHHHHhCCCCcCC-
Confidence               0 0                     001134567778999999998776   8999999999999999999999975 


Q ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC----HHHHHH
Q psy1840         133 RMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD----LRFVHH  185 (423)
Q Consensus       133 ~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt----~~~I~~  185 (423)
                       .+.++.+.+|.......|..+  ..+..+.+||++.|.+||.+|..    +.+|.+
T Consensus       338 -~~~~~Tl~NIv~~~l~Fp~~~--~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~  391 (459)
T KOG0610|consen  338 -SNNKETLRNIVGQPLKFPEEP--EVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKR  391 (459)
T ss_pred             -CCchhhHHHHhcCCCcCCCCC--cchhHHHHHHHHHhccChhhhhccccchHHhhc
Confidence             344666777776655556544  56789999999999999999987    677755

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=8.8e-21  Score=212.07  Aligned_cols=158  Identities=20%  Similarity=0.300  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHH---hCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLH---DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH---~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      +.+++.|++.||+|||   +.+++ ||||||+||+++.++.+++. ||........      ....++..|+|||++.+.
T Consensus       782 ~~~i~~~ia~~L~yLH~~~~~~ii-H~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~------~~~~~t~~y~aPE~~~~~  853 (968)
T PLN00113        782 RRKIAIGIAKALRFLHCRCSPAVV-VGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD------TKCFISSAYVAPETRETK  853 (968)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCee-cCCCCHHhEEECCCCceEEE-eccccccccC------CCccccccccCcccccCC
Confidence            7899999999999999   55777 99999999999999888876 6654332111      223567889999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh---cCC----CCCCCC-----CCCCchHHHHHHHHHh
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT---QGS----GLRPDT-----SSLDCAPSIIACMRTC  169 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~---~~~----~~~p~~-----~~~~~~~~l~~Li~~C  169 (423)
                      .+   +.++|||||||++|||++|+.||.........+.....   ...    ...|..     .......++.+++.+|
T Consensus       854 ~~---~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~C  930 (968)
T PLN00113        854 DI---TEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHC  930 (968)
T ss_pred             CC---CcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhh
Confidence            55   89999999999999999999998532211112222111   000    001111     0112334678899999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHhhh
Q psy1840         170 WEEDPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       170 ~~~dP~~RPt~~~I~~~L~~i~~~  193 (423)
                      |+.||++||++.+|++.|+.+...
T Consensus       931 l~~~P~~RPt~~evl~~L~~~~~~  954 (968)
T PLN00113        931 TATDPTARPCANDVLKTLESASRS  954 (968)
T ss_pred             CcCCchhCcCHHHHHHHHHHhhcc
Confidence            999999999999999999887653

>KOG0666|consensus

Probab=99.83  E-value=6.6e-21  Score=177.39  Aligned_cols=158  Identities=20%  Similarity=0.223  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC----ccEEEeccCCcccccCCCccc-ccccccCCccccCCccccC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR----WVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~----~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~  100 (423)
                      -+|+.||+.|+.|||++=++ ||||||.||||..+    |.|||+|+|+++.....-... ......-|.+|.|||.+.|
T Consensus       135 KsilwQil~Gv~YLH~NWvl-HRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLG  213 (438)
T KOG0666|consen  135 KSILWQILDGVHYLHSNWVL-HRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLG  213 (438)
T ss_pred             HHHHHHHHhhhHHHhhhhee-eccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcc
Confidence            48999999999999998666 99999999999877    999999999999765543332 3345667889999999998


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC--------ChHHHHHHHhc--CC---CCC------CCC--------
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM--------TDEEIITSVTQ--GS---GLR------PDT--------  153 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~--------~~~~i~~~i~~--~~---~~~------p~~--------  153 (423)
                      ..  .+|.+.||||.|||+.||++-++-|.+...        ...+ +.++-.  |-   ...      |..        
T Consensus       214 a~--hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQ-l~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~  290 (438)
T KOG0666|consen  214 AR--HYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQ-LDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFR  290 (438)
T ss_pred             cc--cccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHH-HHHHHHHcCCCccccchhhhhCcchHHHHHHhH
Confidence            76  459999999999999999998766643210        0011 111110  00   000      000        


Q ss_pred             ----C----------CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q psy1840         154 ----S----------SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL  187 (423)
Q Consensus       154 ----~----------~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L  187 (423)
                          .          ...-++...+|+..++..||-+|.|..+.++..
T Consensus       291 ~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~  338 (438)
T KOG0666|consen  291 RHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHP  338 (438)
T ss_pred             HhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhccc
Confidence                0          011234578899999999999999999877654

>KOG0671|consensus

Probab=99.83  E-value=6.5e-21  Score=181.92  Aligned_cols=161  Identities=23%  Similarity=0.313  Sum_probs=117.0

Q ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC--------------------CccEEEeccCCccc
Q psy1840          14 NPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS--------------------RWVLQIADFGLHAF   73 (423)
Q Consensus        14 ~p~~~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~--------------------~~~vKL~DFGla~~   73 (423)
                      +.-.||.+.. .-.++.|++++++|||+.+++ |-||||+|||+-+                    +..+||+|||-+.+
T Consensus       184 N~y~~fpi~~-ir~m~~QL~~sv~fLh~~kl~-HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf  261 (415)
T KOG0671|consen  184 NNYIPFPIDH-IRHMGYQLLESVAFLHDLKLT-HTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATF  261 (415)
T ss_pred             CCccccchHH-HHHHHHHHHHHHHHHHhccee-ecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcce
Confidence            3445665533 358999999999999999998 9999999999821                    34689999999876


Q ss_pred             ccCCCcccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHH---HHHHHhcCC---
Q psy1840          74 KAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEE---IITSVTQGS---  147 (423)
Q Consensus        74 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~---i~~~i~~~~---  147 (423)
                      .....     .....|..|.|||++.+-.+   ++.+||||+||||.|+++|..-|+.-.  ..|   ..+++....   
T Consensus       262 ~~e~h-----s~iVsTRHYRAPEViLgLGw---S~pCDvWSiGCIL~ElytG~~LFqtHe--n~EHLaMMerIlGp~P~~  331 (415)
T KOG0671|consen  262 DHEHH-----STIVSTRHYRAPEVILGLGW---SQPCDVWSIGCILVELYTGETLFQTHE--NLEHLAMMERILGPIPSR  331 (415)
T ss_pred             eccCc-----ceeeeccccCCchheeccCc---CCccCceeeeeEEEEeeccceecccCC--cHHHHHHHHHhhCCCcHH
Confidence            43222     45567888999999999887   999999999999999999999886422  122   222222100   


Q ss_pred             --------------CC-CCCC---------------------CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         148 --------------GL-RPDT---------------------SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       148 --------------~~-~p~~---------------------~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                    .. .|..                     .......++.+|+++++..||.+|+|+.|++..
T Consensus       332 mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~H  406 (415)
T KOG0671|consen  332 MIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSH  406 (415)
T ss_pred             HhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcC
Confidence                          00 0000                     011123468999999999999999999998764

>KOG0669|consensus

Probab=99.83  E-value=6.1e-20  Score=166.58  Aligned_cols=163  Identities=17%  Similarity=0.208  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .-+++.++.+||.|+|.+.++ |||+|+.|+||+.+|.+||+|||+++.+......  ...+...-|.+|.+||.+.|..
T Consensus       126 Ikk~Mk~Lm~GL~~iHr~kil-HRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r  204 (376)
T KOG0669|consen  126 IKKVMKGLMNGLYYIHRNKIL-HRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDR  204 (376)
T ss_pred             HHHHHHHHHHHHHHHHHhhHH-hhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhccc
Confidence            347899999999999999998 9999999999999999999999999755433221  1123344588999999998865


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh---cC--CCCCCC--------------CC---------
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT---QG--SGLRPD--------------TS---------  154 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~---~~--~~~~p~--------------~~---------  154 (423)
                        .++++.|||.-|||+.||++|++-+.+..  ....+..+.   ..  +...|.              .+         
T Consensus       205 --~yg~~iDiWgAgCimaeMwtrspimqgnt--eqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n  280 (376)
T KOG0669|consen  205 --EYGPPIDIWGAGCIMAEMWTRSPIMQGNT--EQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKN  280 (376)
T ss_pred             --ccCCcchhHhHHHHHHHHHccCccccCCh--HHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhhh
Confidence              45999999999999999999998886432  222222222   10  000000              00         


Q ss_pred             ---CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhh
Q psy1840         155 ---SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNA  192 (423)
Q Consensus       155 ---~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~  192 (423)
                         +..-.++..+|+..++..||.+|++.++++..--....
T Consensus       281 ~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kd  321 (376)
T KOG0669|consen  281 RLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKD  321 (376)
T ss_pred             hcccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcC
Confidence               01123478899999999999999999999887655544

>KOG0664|consensus

Probab=99.82  E-value=1.6e-20  Score=172.06  Aligned_cols=155  Identities=24%  Similarity=0.315  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG  106 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~  106 (423)
                      -+++||+.||.|||+.+|. ||||||.|.|++++-.+||||||+++...... ....+...-|..|.|||++.|..  .+
T Consensus       160 VFlYQILRGLKYLHsA~IL-HRDIKPGNLLVNSNCvLKICDFGLARvee~d~-~~hMTqEVVTQYYRAPEiLMGaR--hY  235 (449)
T KOG0664|consen  160 VFVYQILRGLKYLHTANIL-HRDIKPGNLLVNSNCILKICDFGLARTWDQRD-RLNMTHEVVTQYYRAPELLMGAR--RY  235 (449)
T ss_pred             hhHHHHHhhhHHHhhcchh-hccCCCccEEeccCceEEecccccccccchhh-hhhhHHHHHHHHhccHHHhhcch--hh
Confidence            4789999999999999998 99999999999999999999999998654332 22223344567799999999875  45


Q ss_pred             CCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHH--------------------HHHhcCCCCCCCCC-------CCCc
Q psy1840         107 TQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEII--------------------TSVTQGSGLRPDTS-------SLDC  158 (423)
Q Consensus       107 s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~--------------------~~i~~~~~~~p~~~-------~~~~  158 (423)
                      +.+.||||.|||+.|++.++.-|...+. ..-+++                    ..+.++....|..+       ....
T Consensus       236 s~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~  315 (449)
T KOG0664|consen  236 TGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDK  315 (449)
T ss_pred             cCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCCccc
Confidence            9999999999999999998877753211 001111                    11112222223222       1233


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..+...+...++..||++|.+..+.+.
T Consensus       316 ~heav~~~~~~l~~d~dkris~~~A~~  342 (449)
T KOG0664|consen  316 NHEAVDLLQKLLHFDPDKRISVEEALQ  342 (449)
T ss_pred             chHHHHHHHHHhCCCCcccccHhhhcc
Confidence            446677888899999999988776554

>KOG4236|consensus

Probab=99.81  E-value=4.8e-21  Score=188.62  Aligned_cols=148  Identities=22%  Similarity=0.330  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC---ccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~---~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      -++.||+.+|.|||-++|+ |+||||+|||+.+.   -.+||||||+++++....   -.....||+.|+|||+++.+.+
T Consensus       668 FlvtQIL~ALr~LH~knIv-HCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks---FRrsVVGTPAYLaPEVLrnkGy  743 (888)
T KOG4236|consen  668 FLVTQILVALRYLHFKNIV-HCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS---FRRSVVGTPAYLAPEVLRNKGY  743 (888)
T ss_pred             HHHHHHHHHHHHhhhccee-eccCCchheeeccCCCCCceeeccccceeecchhh---hhhhhcCCccccCHHHHhhccc
Confidence            4678999999999999998 99999999999643   479999999999875443   2256789999999999999877


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.+-|+||.|+|+|--++|..||..    ++++-.++.......|+.++..++++..+||...++..-.+|-+....
T Consensus       744 ---NrSLDMWSVGVIiYVsLSGTFPFNE----dEdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~  816 (888)
T KOG4236|consen  744 ---NRSLDMWSVGVIIYVSLSGTFPFNE----DEDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKS  816 (888)
T ss_pred             ---cccccceeeeEEEEEEecccccCCC----ccchhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhh
Confidence               8999999999999999999999964    477888888888888988889999999999999999999999998766


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      +.
T Consensus       817 ls  818 (888)
T KOG4236|consen  817 LS  818 (888)
T ss_pred             cc
Confidence            54

>KOG1151|consensus

Probab=99.80  E-value=8.9e-20  Score=176.56  Aligned_cols=157  Identities=22%  Similarity=0.293  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEc---CCccEEEeccCCcccccCCCccc-----ccccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLID---SRWVLQIADFGLHAFKAGQDETG-----QERKLRRRKLYKAP   95 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld---~~~~vKL~DFGla~~~~~~~~~~-----~~~~~~gt~~y~AP   95 (423)
                      +-+|+.||+.+|.||... ..|+|-||||.|||+-   ..|.+||+|||+++...+.....     .+....||.+|++|
T Consensus       570 ARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPP  649 (775)
T KOG1151|consen  570 ARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPP  649 (775)
T ss_pred             HHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCc
Confidence            569999999999999875 3445999999999994   46889999999999876554332     23456799999999


Q ss_pred             ccccCC-CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh--c-CCCCCCCCCCCCchHHHHHHHHHhhh
Q psy1840          96 ELLRQP-HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT--Q-GSGLRPDTSSLDCAPSIIACMRTCWE  171 (423)
Q Consensus        96 E~l~~~-~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~--~-~~~~~p~~~~~~~~~~l~~Li~~C~~  171 (423)
                      |.+.-+ ..++.+.|+||||.|||+|..+.|+.||++. .+...+++.-.  . ..-..|.-  ..++.+...+|++||+
T Consensus       650 EcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhn-qsQQdILqeNTIlkAtEVqFP~K--PvVsseAkaFIRRCLa  726 (775)
T KOG1151|consen  650 ECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHN-QSQQDILQENTILKATEVQFPPK--PVVSSEAKAFIRRCLA  726 (775)
T ss_pred             ceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCc-hhHHHHHhhhchhcceeccCCCC--CccCHHHHHHHHHHHH
Confidence            988643 4557799999999999999999999999864 33444444321  1 11122222  2467899999999999


Q ss_pred             cCCCCCCCHHHHH
Q psy1840         172 EDPELRPDLRFVH  184 (423)
Q Consensus       172 ~dP~~RPt~~~I~  184 (423)
                      +.-++|.+..++.
T Consensus       727 YRKeDR~DV~qLA  739 (775)
T KOG1151|consen  727 YRKEDRIDVQQLA  739 (775)
T ss_pred             hhhhhhhhHHHHc
Confidence            9999998877664

>KOG0586|consensus

Probab=99.80  E-value=3.1e-20  Score=186.74  Aligned_cols=150  Identities=21%  Similarity=0.276  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      +-....|++++++|||+++++ |||||.+|++|+.+.++||+|||++.++...   ....+.+|++.|.|||++.+..+ 
T Consensus       157 ar~~F~q~vsaveYcH~k~iv-HrdLk~eNilL~~~mnikIaDfgfS~~~~~~---~~lqt~cgsppyAaPEl~~g~~y-  231 (596)
T KOG0586|consen  157 ARAKFRQIVSAVEYCHSKNIV-HRDLKAENILLDENMNIKIADFGFSTFFDYG---LMLQTFCGSPPYAAPELFNGKKY-  231 (596)
T ss_pred             hhhhhHHHHHHHHHHhhccee-ccccchhhcccccccceeeeccccceeeccc---ccccccCCCCCccChHhhcCccc-
Confidence            446788999999999999998 9999999999999999999999999877522   23467899999999999998774 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                       .++.+|+||+|+++|-|+.|..||++.  +..++-.++..++..-|.    ..+.+..+++.+++-.+|.+|+++++|.
T Consensus       232 -~gpe~D~Wslgvvly~LV~GsLPFDG~--~lk~Lr~rvl~gk~rIp~----~ms~dce~lLrk~lvl~Pskr~~~dqim  304 (596)
T KOG0586|consen  232 -DGPEVDIWSLGVVLYALVEGSLPFDGQ--NLKELRPRVLRGKYRIPF----YMSCDCEDLLRKFLVLNPSKRGPCDQIM  304 (596)
T ss_pred             -CCcceehhhhhhhheeeeecccccCCc--ccccccchheeeeecccc----eeechhHHHHHHhhccCccccCCHHHhh
Confidence             489999999999999999999999853  335555566665544333    3466788999999999999999999986


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       305 ~~  306 (596)
T KOG0586|consen  305 KD  306 (596)
T ss_pred             hh
Confidence            53

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.80  E-value=3.2e-19  Score=191.35  Aligned_cols=93  Identities=18%  Similarity=0.269  Sum_probs=75.0

Q ss_pred             CCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHH
Q psy1840          88 RRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMR  167 (423)
Q Consensus        88 gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~  167 (423)
                      ||+.|+|||++.+..+   +.++|||||||++|||++|..||..  ....++...+.......|... ..++..+.+++.
T Consensus       542 GT~~Y~APE~l~~~~~---~~~~DiwSlG~il~ElltG~~pf~~--~~~~~~~~~il~~~~~~p~~~-~~~~~~~~~~l~  615 (669)
T cd05610         542 GTPDYLAPELLLGKPH---GPAVDWWALGVCLFEFLTGIPPFND--ETPQQVFQNILNRDIPWPEGE-EKLSVNAQNAIE  615 (669)
T ss_pred             eCccccCHHHcCCCCC---CcHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcCCCCCccc-ccCCHHHHHHHH
Confidence            4778999999987655   8999999999999999999999964  445666666655443333332 357888999999


Q ss_pred             HhhhcCCCCCCCHHHHHHH
Q psy1840         168 TCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       168 ~C~~~dP~~RPt~~~I~~~  186 (423)
                      .||..||.+||++.+++..
T Consensus       616 ~lL~~dP~~R~ta~e~l~h  634 (669)
T cd05610         616 ILLTMDPTKRAGLKELKQH  634 (669)
T ss_pred             HHcccChhHCcCHHHHHhC
Confidence            9999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0612|consensus

Probab=99.80  E-value=1.8e-19  Score=191.03  Aligned_cols=161  Identities=19%  Similarity=0.250  Sum_probs=123.3

Q ss_pred             CC-ChHHH-HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCc
Q psy1840          19 FN-IPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPE   96 (423)
Q Consensus        19 ~~-~p~~~-l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE   96 (423)
                      |. +|++- .-.+..|+.||.-||+.|.| ||||||+|||||.+|++||+|||-+-..... .........|||-|.+||
T Consensus       169 ~~~~pE~~ArFY~aEiVlAldslH~mgyV-HRDiKPDNvLld~~GHikLADFGsClkm~~d-G~V~s~~aVGTPDYISPE  246 (1317)
T KOG0612|consen  169 FDRLPEDWARFYTAEIVLALDSLHSMGYV-HRDIKPDNVLLDKSGHIKLADFGSCLKMDAD-GTVRSSVAVGTPDYISPE  246 (1317)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHHhccce-eccCCcceeEecccCcEeeccchhHHhcCCC-CcEEeccccCCCCccCHH
Confidence            44 56653 34578999999999999999 9999999999999999999999986554322 233346678999999999


Q ss_pred             cccCCC--CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CCCCCCCCCCCchHHHHHHHHHhhhc
Q psy1840          97 LLRQPH--LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SGLRPDTSSLDCAPSIIACMRTCWEE  172 (423)
Q Consensus        97 ~l~~~~--~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~~~p~~~~~~~~~~l~~Li~~C~~~  172 (423)
                      +++...  ...++..+|.||+||++|||+.|..||+.  .+..+-..+|...  ....|.  ..+++++..+||.+.+ -
T Consensus       247 vLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYa--dslveTY~KIm~hk~~l~FP~--~~~VSeeakdLI~~ll-~  321 (1317)
T KOG0612|consen  247 VLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYA--DSLVETYGKIMNHKESLSFPD--ETDVSEEAKDLIEALL-C  321 (1317)
T ss_pred             HHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchH--HHHHHHHHHHhchhhhcCCCc--ccccCHHHHHHHHHHh-c
Confidence            997432  24669999999999999999999999973  2334445555543  223342  2358999999999888 4


Q ss_pred             CCCCCCC---HHHHHHH
Q psy1840         173 DPELRPD---LRFVHHK  186 (423)
Q Consensus       173 dP~~RPt---~~~I~~~  186 (423)
                      +|+.|..   +.+|..+
T Consensus       322 ~~e~RLgrngiedik~H  338 (1317)
T KOG0612|consen  322 DREVRLGRNGIEDIKNH  338 (1317)
T ss_pred             ChhhhcccccHHHHHhC
Confidence            6888877   8887664

>KOG0607|consensus

Probab=99.80  E-value=2.6e-19  Score=167.33  Aligned_cols=160  Identities=19%  Similarity=0.217  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc---cEEEeccCCcccccCCC-----cccccccccCCccccCCc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGLHAFKAGQD-----ETGQERKLRRRKLYKAPE   96 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~---~vKL~DFGla~~~~~~~-----~~~~~~~~~gt~~y~APE   96 (423)
                      +-.+..+|+.||.|||.+||. ||||||+|||-.+..   -+|||||.+..-.....     ......+.+|+..|||||
T Consensus       178 As~vvkdia~aLdFlH~kgIA-HRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPE  256 (463)
T KOG0607|consen  178 ASRVVKDIASALDFLHTKGIA-HRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPE  256 (463)
T ss_pred             HHHHHHHHHHHHHHHhhcCcc-cccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchh
Confidence            568999999999999999998 999999999996544   48999998854322111     112234567788899999


Q ss_pred             cccCC--CCCCCCCccchHHHHHHHHHHHhCCCCCCCCC-------------CChHHHHHHHhcCCCCCCCCCCCCchHH
Q psy1840          97 LLRQP--HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR-------------MTDEEIITSVTQGSGLRPDTSSLDCAPS  161 (423)
Q Consensus        97 ~l~~~--~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~-------------~~~~~i~~~i~~~~~~~p~~~~~~~~~~  161 (423)
                      +..--  ....+..++|.||||+|+|-|++|..||.+..             ...+.+.+.|..|....|...+..++.+
T Consensus       257 VVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~e  336 (463)
T KOG0607|consen  257 VVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSE  336 (463)
T ss_pred             HHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHH
Confidence            87531  12245899999999999999999999995421             1235678889999999998888889999


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         162 IIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       162 l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ..+++...+..++.+|-++.+++.
T Consensus       337 akdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  337 AKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             HHHHHHHHHhccHHhhhhhhhccC
Confidence            999999999999999988887765

>KOG0665|consensus

Probab=99.79  E-value=2.2e-19  Score=167.95  Aligned_cols=153  Identities=23%  Similarity=0.277  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG  106 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~  106 (423)
                      .+..|++.|+.|||+.||+ ||||||+||++..+..+||.|||+++.....   ...+....+..|.|||++.+..+   
T Consensus       122 ~i~yq~~~~ik~lhs~~Ii-hRdLkPsnivv~~~~~lKi~dfg~ar~e~~~---~~mtpyVvtRyyrapevil~~~~---  194 (369)
T KOG0665|consen  122 YILYQMLCGIKHLHSAGII-HRDLKPSNIVVNSDCTLKILDFGLARTEDTD---FMMTPYVVTRYYRAPEVILGMGY---  194 (369)
T ss_pred             HHHHHHHHHHHHHHhccee-ecccCcccceecchhheeeccchhhcccCcc---cccCchhheeeccCchheeccCC---
Confidence            7899999999999999998 9999999999999999999999998753222   22345667888999999998765   


Q ss_pred             CCccchHHHHHHHHHHHhCCCCCCCCCC-------------ChHHHHHHHhc-------------C---CCCCCC-----
Q psy1840         107 TQKGDVYSFGLVLYEVIGRQGPWGHLRM-------------TDEEIITSVTQ-------------G---SGLRPD-----  152 (423)
Q Consensus       107 s~ksDVyS~Giil~elltg~~Pf~~~~~-------------~~~~i~~~i~~-------------~---~~~~p~-----  152 (423)
                      ...+||||.||++.||++|..-|.+...             .+.....++..             +   ....|+     
T Consensus       195 ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~  274 (369)
T KOG0665|consen  195 KENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPV  274 (369)
T ss_pred             cccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccc
Confidence            8899999999999999999988764311             11111111110             0   000111     


Q ss_pred             C-CCC-CchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         153 T-SSL-DCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       153 ~-~~~-~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      . ... .-...+.+++.+||..||++|.++.+++..
T Consensus       275 ~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  275 VLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             cccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence            0 011 123457889999999999999999998764

>KOG0695|consensus

Probab=99.79  E-value=6.9e-19  Score=165.28  Aligned_cols=149  Identities=19%  Similarity=0.345  Sum_probs=114.7

Q ss_pred             ChHHHH-HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          21 IPIGSI-SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        21 ~p~~~l-~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      +|++.. -....|+.+|.|||++||| .||||..|+|+|..|.+||+|||.++.....  ...+.+++||+.|.|||+++
T Consensus       348 lpeeharfys~ei~lal~flh~rgii-yrdlkldnvlldaeghikltdygmcke~l~~--gd~tstfcgtpnyiapeilr  424 (593)
T KOG0695|consen  348 LPEEHARFYSAEICLALNFLHERGII-YRDLKLDNVLLDAEGHIKLTDYGMCKEGLGP--GDTTSTFCGTPNYIAPEILR  424 (593)
T ss_pred             CcHHHhhhhhHHHHHHHHHHhhcCee-eeeccccceEEccCCceeecccchhhcCCCC--CcccccccCCCcccchhhhc
Confidence            345533 3467899999999999999 9999999999999999999999998753322  23346889999999999999


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCC-----CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR-----MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~-----~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      +..+   +.+.|-|++|++++||+.|+.||...+     ++.++.+-++.-.+..+.+   ...+-....+++..+++||
T Consensus       425 geey---gfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqirip---rslsvkas~vlkgflnkdp  498 (593)
T KOG0695|consen  425 GEEY---GFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIP---RSLSVKASHVLKGFLNKDP  498 (593)
T ss_pred             cccc---CceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhccccc---ceeehhhHHHHHHhhcCCc
Confidence            9877   899999999999999999999996432     2333433333322222221   2345567788999999999


Q ss_pred             CCCC
Q psy1840         175 ELRP  178 (423)
Q Consensus       175 ~~RP  178 (423)
                      .+|.
T Consensus       499 ~erl  502 (593)
T KOG0695|consen  499 KERL  502 (593)
T ss_pred             HHhc
Confidence            9994

>KOG4250|consensus

Probab=99.76  E-value=2.1e-18  Score=175.97  Aligned_cols=168  Identities=20%  Similarity=0.332  Sum_probs=119.2

Q ss_pred             CCCCChHHH-HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE----cCCccEEEeccCCcccccCCCcccccccccCCcc
Q psy1840          17 SPFNIPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLI----DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL   91 (423)
Q Consensus        17 ~~~~~p~~~-l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl----d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~   91 (423)
                      --+.+|+.. +.++.+++.||.|||.+||+ ||||||.||++    |+.-.-||+|||.|+.+.+..   ...+..||..
T Consensus       113 N~~GLpE~e~l~lL~d~~~al~~LrEn~Iv-HRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s---~~~S~vGT~~  188 (732)
T KOG4250|consen  113 NAYGLPESEFLDLLSDLVSALRHLRENGIV-HRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS---LFTSLVGTEE  188 (732)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHcCce-eccCCCCcEEEeecCCCceEEeeecccccccCCCCC---eeeeecCchh
Confidence            346677764 78999999999999999998 99999999988    344467999999999876544   3467899999


Q ss_pred             ccCCccccC-CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC--hHHHHHHHhcCCC-------------------C
Q psy1840          92 YKAPELLRQ-PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--DEEIITSVTQGSG-------------------L  149 (423)
Q Consensus        92 y~APE~l~~-~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--~~~i~~~i~~~~~-------------------~  149 (423)
                      |.+||.+.. +.+   +..+|.|||||++|+.+||..||......  ..++...+...++                   .
T Consensus       189 YLhPel~E~q~~y---~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~~~~eNgpv~~s~~  265 (732)
T KOG4250|consen  189 YLHPELYERQKKY---TATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVAIGAQEEENGPVEWSST  265 (732)
T ss_pred             hcChHHHhhccCc---CceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCceeEeeecccCCceeeecc
Confidence            999999974 434   89999999999999999999999643222  2234433332110                   0


Q ss_pred             CCC--CCCCCchHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHHh
Q psy1840         150 RPD--TSSLDCAPSIIACMRTCWEEDPELRP--DLRFVHHKLKEMN  191 (423)
Q Consensus       150 ~p~--~~~~~~~~~l~~Li~~C~~~dP~~RP--t~~~I~~~L~~i~  191 (423)
                      .|.  .........+-..+..++..+|.+|-  .+.+....+..+.
T Consensus       266 lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~~~~~~~~Fa~~~dIL  311 (732)
T KOG4250|consen  266 LPQPNHLSRGLATRLTKWLASMLEWNPRKRGHEGFDRFFAEVDDIL  311 (732)
T ss_pred             CCCcccccHHHHhhhhHHHHHHHhhhHHHhCCCCcchHHHHHHHHH
Confidence            111  00111223455566777888888887  6666655555543

>KOG0587|consensus

Probab=99.76  E-value=8.6e-19  Score=182.01  Aligned_cols=155  Identities=19%  Similarity=0.323  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ..-|+..++.|+.|||.+.+| |||+|-.|||++.++.|||+|||++..+...  .....+..||++|||||++....  
T Consensus       125 IaYI~re~lrgl~HLH~nkvi-HRDikG~NiLLT~e~~VKLvDFGvSaQldsT--~grRnT~iGtP~WMAPEViac~e~~  201 (953)
T KOG0587|consen  125 IAYILREILRGLAHLHNNKVI-HRDIKGQNVLLTENAEVKLVDFGVSAQLDST--VGRRNTFIGTPYWMAPEVIACDESP  201 (953)
T ss_pred             HHHHHHHHHHHHHHHhhccee-eecccCceEEEeccCcEEEeeeeeeeeeecc--cccccCcCCCcccccceeeecccCC
Confidence            467899999999999999888 9999999999999999999999998765432  23346778999999999997643  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCC-CCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS-SLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~-~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      -..++..+|+|||||+..||.-|.+|+.+  +.+...+-.+.+.+  +|... +..++.++.++|..|+..|-++||+..
T Consensus       202 d~tyd~R~D~WsLGITaIEladG~PPl~D--mHPmraLF~IpRNP--PPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~  277 (953)
T KOG0587|consen  202 DATYDYRSDLWSLGITAIEMAEGAPPLCD--MHPMRALFLIPRNP--PPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTE  277 (953)
T ss_pred             CCCcccccchhhccceeehhcCCCCCccC--cchhhhhccCCCCC--CccccchhhHHHHHHHHHHHHHhhccccCcchh
Confidence            22457889999999999999999999864  44433333333322  22222 457889999999999999999999998


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       278 ~ll~h  282 (953)
T KOG0587|consen  278 ELLKH  282 (953)
T ss_pred             hhccC
Confidence            87653

>KOG0668|consensus

Probab=99.75  E-value=8e-18  Score=150.98  Aligned_cols=154  Identities=19%  Similarity=0.230  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      -.+.+++.||.|+|+.||+ |||+||.|++||. .-.++|+|+|++.+.....+..   ....+..|-.||.+..-.  .
T Consensus       136 yY~~elLkALdyCHS~GIm-HRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYn---VRVASRyfKGPELLVdy~--~  209 (338)
T KOG0668|consen  136 YYIYELLKALDYCHSMGIM-HRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYN---VRVASRYFKGPELLVDYQ--M  209 (338)
T ss_pred             HHHHHHHHHHhHHHhcCcc-cccCCcceeeechhhceeeeeecchHhhcCCCceee---eeeehhhcCCchheeech--h
Confidence            4688999999999999999 9999999999995 4579999999998875544332   234456688999998644  4


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh------------c-------------CCC-------CCCCC
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT------------Q-------------GSG-------LRPDT  153 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~------------~-------------~~~-------~~p~~  153 (423)
                      +..+-|+|||||++..|+.++.||.+.....+++..-..            .             +..       +-+..
T Consensus       210 YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~  289 (338)
T KOG0668|consen  210 YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSE  289 (338)
T ss_pred             ccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCcc
Confidence            588899999999999999999999765544444332111            0             000       00111


Q ss_pred             CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       154 ~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ...-.+++..+++...+..|-.+|+|+.|....
T Consensus       290 n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  290 NQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             ccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence            122356899999999999999999999987653

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.74  E-value=1e-17  Score=172.45  Aligned_cols=158  Identities=16%  Similarity=0.089  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.+++ ||||||+||+++.++.+||+|||++........ .......+++.|+|||.+......
T Consensus       311 ~~~i~~ql~~aL~~lH~~~iv-HrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~-~~~~~g~~tp~Y~aPE~l~~~~~~  388 (507)
T PLN03224        311 IKGVMRQVLTGLRKLHRIGIV-HRDIKPENLLVTVDGQVKIIDFGAAVDMCTGIN-FNPLYGMLDPRYSPPEELVMPQSC  388 (507)
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCchHhEEECCCCcEEEEeCcCccccccCCc-cCccccCCCcceeChhhhcCCCCC
Confidence            467899999999999999988 999999999999999999999999865432211 111122346789999988643210


Q ss_pred             -------------------CCCCccchHHHHHHHHHHHhCCC-CCCCCCCChHHH------HH---HHhcCCCCCCCCCC
Q psy1840         105 -------------------RGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEI------IT---SVTQGSGLRPDTSS  155 (423)
Q Consensus       105 -------------------~~s~ksDVyS~Giil~elltg~~-Pf~~~~~~~~~i------~~---~i~~~~~~~p~~~~  155 (423)
                                         ....+.||||+||++++|+++.. ||.....-..+.      ..   .+.......+  ..
T Consensus       389 ~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~--~~  466 (507)
T PLN03224        389 PRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFS--LL  466 (507)
T ss_pred             CccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcc--cc
Confidence                               01235799999999999999875 664321111111      11   1111111111  12


Q ss_pred             CCchHHHHHHHHHhhhcCC---CCCCCHHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDP---ELRPDLRFVHHK  186 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP---~~RPt~~~I~~~  186 (423)
                      ...++...+++.+++..+|   .+|+|+.+++++
T Consensus       467 d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        467 DRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             cccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            3567899999999999766   689999998764

>KOG0608|consensus

Probab=99.73  E-value=4.9e-18  Score=170.66  Aligned_cols=144  Identities=23%  Similarity=0.243  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCC---------C-------cc-----------
Q psy1840          28 VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ---------D-------ET-----------   80 (423)
Q Consensus        28 i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~---------~-------~~-----------   80 (423)
                      .+..+..++++.|+.|+| ||||||+|||||.+|++||+||||+.-+...         +       +.           
T Consensus       734 YIAEltcAiesVHkmGFI-HRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~l  812 (1034)
T KOG0608|consen  734 YIAELTCAIESVHKMGFI-HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCL  812 (1034)
T ss_pred             HHHHHHHHHHHHHhccce-ecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccc
Confidence            466889999999999999 9999999999999999999999996422110         0       00           


Q ss_pred             -------------cccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC
Q psy1840          81 -------------GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS  147 (423)
Q Consensus        81 -------------~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~  147 (423)
                                   .......||+.|+|||++....+   ++.+|.||.|+|||||+.|+.||...  ++.+...++....
T Consensus       813 kvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~---~q~cdwws~gvil~em~~g~~pf~~~--tp~~tq~kv~nw~  887 (1034)
T KOG0608|consen  813 KVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGY---TQLCDWWSVGVILYEMLVGQPPFLAD--TPGETQYKVINWR  887 (1034)
T ss_pred             hHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCc---cccchhhHhhHHHHHHhhCCCCccCC--CCCcceeeeeehh
Confidence                         00124568999999999987766   99999999999999999999999642  2222222222221


Q ss_pred             CCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         148 GLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       148 ~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      ...--....+.+.+..++|.+.+ -+++.|.
T Consensus       888 ~~l~~~~~~~ls~e~~~li~kLc-~sad~RL  917 (1034)
T KOG0608|consen  888 NFLHIPYQGNLSKEALDLIQKLC-CSADSRL  917 (1034)
T ss_pred             hccccccccccCHHHHHHHHHHh-cChhhhh
Confidence            11111122356788888776544 2355663

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.71  E-value=4.1e-17  Score=147.00  Aligned_cols=121  Identities=29%  Similarity=0.496  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.+++.++.|||+.|++ |+||+|.||+++. ++.++|+|||.+........  ......+...|++||.+....
T Consensus        93 ~~~~~~~~l~~~l~~lh~~~~~-H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~pe~~~~~~  169 (215)
T cd00180          93 EILRILLQILEGLEYLHSNGII-HRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS--LLKTIVGTPAYMAPEVLLGKG  169 (215)
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-ccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc--hhhcccCCCCccChhHhcccC
Confidence            3689999999999999999998 9999999999999 89999999999875533221  112345667799999987651


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                        ..+.++|+|++|++++++                                     ..+.+++..|++.+|++||++.+
T Consensus       170 --~~~~~~D~~~lg~~~~~l-------------------------------------~~~~~~l~~~l~~~p~~R~~~~~  210 (215)
T cd00180         170 --YYSEKSDIWSLGVILYEL-------------------------------------PELKDLIRKMLQKDPEKRPSAKE  210 (215)
T ss_pred             --CCCchhhhHHHHHHHHHH-------------------------------------HHHHHHHHHHhhCCcccCcCHHH
Confidence              238899999999999998                                     57889999999999999999998


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       211 l~~~  214 (215)
T cd00180         211 ILEH  214 (215)
T ss_pred             HhhC
Confidence            8754

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0662|consensus

Probab=99.70  E-value=9.2e-17  Score=139.29  Aligned_cols=156  Identities=16%  Similarity=0.167  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      +..-+++.|+..|+.|+|++++. ||||||.|.||+.+|.+|++|||+++...-.  ........-|.+|.+|.++.+..
T Consensus       101 ~~~rsfmlqllrgl~fchshnvl-hrdlkpqnllin~ngelkladfglarafgip--vrcysaevvtlwyrppdvlfgak  177 (292)
T KOG0662|consen  101 EIVRSFMLQLLRGLGFCHSHNVL-HRDLKPQNLLINRNGELKLADFGLARAFGIP--VRCYSAEVVTLWYRPPDVLFGAK  177 (292)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhh-hccCCcceEEeccCCcEEecccchhhhcCCc--eEeeeceeeeeeccCcceeeeee
Confidence            33568999999999999999998 9999999999999999999999998865322  22223456688899999998876


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhc--C---CCCCCC------------CCC--------C
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQ--G---SGLRPD------------TSS--------L  156 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~--~---~~~~p~------------~~~--------~  156 (423)
                        -++.+.|+||-|||+.|+.. |++-|++.... +++ .++-.  |   ....|.            .+.        .
T Consensus       178 --ly~tsidmwsagcifaelanagrplfpg~dvd-dql-krif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp  253 (292)
T KOG0662|consen  178 --LYSTSIDMWSAGCIFAELANAGRPLFPGNDVD-DQL-KRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVP  253 (292)
T ss_pred             --hhccchHhhhcchHHHHHhhcCCCCCCCCcHH-HHH-HHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhh
Confidence              35899999999999999996 55556654332 222 22210  0   000010            000        1


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .....-+++++..+.-+|.+|.+++..++
T Consensus       254 ~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  254 KLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             hhcchhHHHHHHHhccCcccccCHHHHhc
Confidence            12234577889999999999999887654

>KOG0670|consensus

Probab=99.70  E-value=1.1e-17  Score=165.09  Aligned_cols=98  Identities=22%  Similarity=0.392  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      +.+.|+..+|.+|-..|++ |.||||.|||++ +...+||||||-|.+......+    .+.-+.+|.|||++.|..+  
T Consensus       540 sYaqQLflALklLK~c~vl-HaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneit----PYLVSRFYRaPEIiLG~~y--  612 (752)
T KOG0670|consen  540 SYAQQLFLALKLLKKCGVL-HADIKPDNILVNESKNILKLCDFGSASFASENEIT----PYLVSRFYRAPEIILGLPY--  612 (752)
T ss_pred             HHHHHHHHHHHHHHhcCee-ecccCccceEeccCcceeeeccCcccccccccccc----HHHHHHhccCcceeecCcc--
Confidence            6799999999999999998 999999999997 4668899999998776544322    2344567999999999876  


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCC
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHL  132 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~  132 (423)
                       ....|+||.||+|||++||+.-|++.
T Consensus       613 -d~~iD~WSvgctLYElYtGkIlFpG~  638 (752)
T KOG0670|consen  613 -DYPIDTWSVGCTLYELYTGKILFPGR  638 (752)
T ss_pred             -cCCccceeeceeeEEeeccceecCCC
Confidence             88999999999999999999888753

>KOG1345|consensus

Probab=99.69  E-value=2.7e-17  Score=150.92  Aligned_cols=156  Identities=19%  Similarity=0.284  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE-c-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC--
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLI-D-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP--  101 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl-d-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~--  101 (423)
                      -.++.|+++++.|+|+++++ |||||.+|||| + +...+||||||+........     .....+..|.+||.+...  
T Consensus       124 K~v~~ql~SAi~fMHsknlV-HRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV-----~~~~~~~~y~~pe~~~~~~n  197 (378)
T KOG1345|consen  124 KKVFAQLLSAIEFMHSKNLV-HRDLKAENILIFDADFYRVKLCDFGLTRKVGTTV-----KYLEYVNNYHAPELCDTVVN  197 (378)
T ss_pred             HHHHHHHHHHHHHhhccchh-hcccccceEEEecCCccEEEeeecccccccCcee-----hhhhhhcccCCcHHHhhccc
Confidence            47899999999999999998 99999999999 3 33489999999976432211     112234558999876532  


Q ss_pred             -CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChH---HHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         102 -HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDE---EIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       102 -~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~---~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                       .+ ...+.+|+|.|||+++.++||..||+.....+.   +..+......+..|... ..+++.+..+.++-+..+|++|
T Consensus       198 e~~-~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F-~~fs~~a~r~Fkk~lt~~~~dr  275 (378)
T KOG1345|consen  198 EKL-VVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKF-NPFSEKALRLFKKSLTPRFKDR  275 (378)
T ss_pred             cce-EecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhh-cccCHHHHHHHHHhcCCccccc
Confidence             22 347889999999999999999999974433332   33333333222223222 3578889999999999999999


Q ss_pred             CCHHHHHHHHHH
Q psy1840         178 PDLRFVHHKLKE  189 (423)
Q Consensus       178 Pt~~~I~~~L~~  189 (423)
                      -.+.++.+..+.
T Consensus       276 cki~~~kk~rk~  287 (378)
T KOG1345|consen  276 CKIWTAKKMRKC  287 (378)
T ss_pred             chhHHHHHHHHH
Confidence            666665554433

>KOG0195|consensus

Probab=99.68  E-value=9.4e-17  Score=147.38  Aligned_cols=157  Identities=24%  Similarity=0.326  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      +.++++.+++.||+|||+- .++.---|.+..++||.+.+.+|+-- -.++.      .......-.+.|++||.++..+
T Consensus       290 qav~faldiargmaflhslep~ipr~~lns~hvmidedltarisma-d~kfs------fqe~gr~y~pawmspealqrkp  362 (448)
T KOG0195|consen  290 QAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMA-DTKFS------FQEVGRAYSPAWMSPEALQRKP  362 (448)
T ss_pred             hHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecc-cceee------eeccccccCcccCCHHHHhcCc
Confidence            3689999999999999997 44444568999999999998887521 11111      1112223457799999998766


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      -.....++|+|||++++||+.|+..||.+...  -+.--++. -.+.++.+++ ..++.+..||.-|+++||.+||.|+.
T Consensus       363 ed~n~raadmwsfaillwel~trevpfadlsp--mecgmkia-leglrv~ipp-gis~hm~klm~icmnedpgkrpkfdm  438 (448)
T KOG0195|consen  363 EDLNIRAADMWSFAILLWELNTREVPFADLSP--MECGMKIA-LEGLRVHIPP-GISRHMNKLMNICMNEDPGKRPKFDM  438 (448)
T ss_pred             hhcchhhhhHHHHHHHHHHhhccccccccCCc--hhhhhhhh-hccccccCCC-CccHHHHHHHHHHhcCCCCcCCCcce
Confidence            44456789999999999999999999986432  22222221 1235555544 67899999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy1840         183 VHHKLKEMN  191 (423)
Q Consensus       183 I~~~L~~i~  191 (423)
                      |+..|+++.
T Consensus       439 ivpilekm~  447 (448)
T KOG0195|consen  439 IVPILEKMI  447 (448)
T ss_pred             ehhhHHHhc
Confidence            999888763

>KOG0590|consensus

Probab=99.68  E-value=4e-17  Score=171.56  Aligned_cols=164  Identities=20%  Similarity=0.210  Sum_probs=126.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccCCc
Q psy1840          19 FNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPE   96 (423)
Q Consensus        19 ~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE   96 (423)
                      +..+.+.-.+..|+..|++|+|..|+. |||||++|++++.+|.+||+|||.+.......+.  .......|+..|+|||
T Consensus       416 ~~~~~e~~c~fKqL~~Gv~y~h~~Gia-hrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE  494 (601)
T KOG0590|consen  416 KLTPLEADCFFKQLLRGVKYLHSMGLA-HRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPE  494 (601)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHhcCce-eccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcc
Confidence            344566789999999999999999998 9999999999999999999999998765443333  4456778899999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC---CCCCCCCCCCchHHHHHHHHHhhhcC
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS---GLRPDTSSLDCAPSIIACMRTCWEED  173 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~---~~~p~~~~~~~~~~l~~Li~~C~~~d  173 (423)
                      .+.+..+  .....||||.|+++..|++|+.||..................   ...|.......+...+.+|.++++.|
T Consensus       495 ~~~~~~y--dpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~  572 (601)
T KOG0590|consen  495 VLTGKEY--DPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLD  572 (601)
T ss_pred             ccccccc--CcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCC
Confidence            9998876  357799999999999999999999654333322211111100   01111112456788999999999999


Q ss_pred             CCCCCCHHHHHH
Q psy1840         174 PELRPDLRFVHH  185 (423)
Q Consensus       174 P~~RPt~~~I~~  185 (423)
                      |.+|.|+.+|++
T Consensus       573 P~~R~ti~~i~~  584 (601)
T KOG0590|consen  573 PTKRITIEQILN  584 (601)
T ss_pred             hhheecHHHHhh
Confidence            999999999976

>KOG0576|consensus

Probab=99.63  E-value=4e-16  Score=158.09  Aligned_cols=154  Identities=18%  Similarity=0.237  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG  106 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~  106 (423)
                      -.++...+|++|||+.|-+ |||||-.||++++.|.+|++|||.+..+...  ......+.||+.|||||+..-+.-.-+
T Consensus       116 yvcRetl~gl~ylhs~gk~-hRdiKGanilltd~gDvklaDfgvsaqitat--i~KrksfiGtpywmapEvaaverkggy  192 (829)
T KOG0576|consen  116 YVCRETLQGLKYLHSQGKI-HRDIKGANILLTDEGDVKLADFGVSAQITAT--IAKRKSFIGTPYWMAPEVAAVERKGGY  192 (829)
T ss_pred             HHHhhhhccchhhhcCCcc-cccccccceeecccCceeecccCchhhhhhh--hhhhhcccCCccccchhHHHHHhcccc
Confidence            4577889999999999988 9999999999999999999999997654322  123357899999999998754332234


Q ss_pred             CCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCC-CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         107 TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS-SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       107 s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~-~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .+++|||+.|+...|+---++|..+  ..+......+....+..|... ....++.+.++++.|+..+|.+||+...++.
T Consensus       193 nqlcdiwa~gitAiel~eLqpplfd--lhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  193 NQLCDIWALGITAIELGELQPPLFD--LHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             cccccccccccchhhhhhcCCcccc--cchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence            8999999999999999888888643  333333333333333333222 3568899999999999999999999987665

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.62  E-value=1.7e-15  Score=139.00  Aligned_cols=119  Identities=22%  Similarity=0.304  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcccc-CCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR-QPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~-~~~~  103 (423)
                      ...++.+++.++.|||+.+++ |+||+|.||+++.++.++|+|||.+......... ......++..|++||.+. ..  
T Consensus       100 ~~~~~~~l~~~l~~lh~~~i~-h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~~~~pe~~~~~~--  175 (225)
T smart00221      100 ARFYLRQILEALEYLHSLGIV-HRDLKPENILLGMDGLVKLADFGLARFIHRDLAA-LLKTVKGTPFYLAPEVLLGGK--  175 (225)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEeeCceeeEecCcccc-cccceeccCCcCCHhHhcCCC--
Confidence            578999999999999999998 9999999999999999999999998765433210 112345667799999984 22  


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG  148 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~  148 (423)
                       ..+.++|+||||++++|+++|+.||........++.+.+..+.+
T Consensus       176 -~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  219 (225)
T smart00221      176 -GYGEAVDIWSLGVILYELLWGPEPFSGEGEFTSLLSDVWSFGVP  219 (225)
T ss_pred             -CCCchhhHHHHHHHHHHHHHCCCCccccchhHHHHHHHHhcCCc
Confidence             33679999999999999999999996534445567777766543

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1152|consensus

Probab=99.59  E-value=4.2e-16  Score=155.63  Aligned_cols=99  Identities=24%  Similarity=0.483  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      -.|..|++.|++|||+.||| |||||-+|+.+|++|-+||+|||-+......    ....+.||..|.|||++.|..|  
T Consensus       673 k~IFkQV~agi~hlh~~~iv-hrdikdenvivd~~g~~klidfgsaa~~ksg----pfd~f~gtv~~aapevl~g~~y--  745 (772)
T KOG1152|consen  673 KLIFKQVVAGIKHLHDQGIV-HRDIKDENVIVDSNGFVKLIDFGSAAYTKSG----PFDVFVGTVDYAAPEVLGGEKY--  745 (772)
T ss_pred             HHHHHHHHhccccccccCce-ecccccccEEEecCCeEEEeeccchhhhcCC----CcceeeeeccccchhhhCCCcc--
Confidence            46889999999999999998 9999999999999999999999998765322    2356789999999999999875  


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCC
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGH  131 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~  131 (423)
                      .++.-|||++|+++|-++.+..||..
T Consensus       746 ~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  746 LGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             CCCcchhhhhhheeeEEEeccCCCcC
Confidence            37889999999999999999999863

>KOG1240|consensus

Probab=99.59  E-value=1.8e-15  Score=160.73  Aligned_cols=177  Identities=21%  Similarity=0.205  Sum_probs=121.7

Q ss_pred             ccchhhhhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCccc--ccCCCc
Q psy1840           2 RRSVRETEAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF--KAGQDE   79 (423)
Q Consensus         2 r~~~~~~~~~~~~p~~~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~--~~~~~~   79 (423)
                      |.-++.+...... ..||..-+++-.++.||..|+..+|..|++ |||||.+||||++-..+.|+||.-.+.  +...++
T Consensus       100 RqyvkhnLyDRlS-TRPFL~~iEKkWiaFQLL~al~qcH~~gVc-HGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNP  177 (1431)
T KOG1240|consen  100 RQYVKHNLYDRLS-TRPFLVLIEKKWIAFQLLKALSQCHKLGVC-HGDIKSENILITSWNWLYLTDFASFKPTYLPEDNP  177 (1431)
T ss_pred             HHHHhhhhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHHcCcc-ccccccceEEEeeechhhhhcccccCCccCCCCCc
Confidence            4455556655554 457877788999999999999999999998 999999999999988899999986542  222221


Q ss_pred             ccc---cccccCCccccCCccccCCC--------CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCC
Q psy1840          80 TGQ---ERKLRRRKLYKAPELLRQPH--------LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGS  147 (423)
Q Consensus        80 ~~~---~~~~~gt~~y~APE~l~~~~--------~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~  147 (423)
                      ...   -.+.....+|.|||.+....        -+..+++.||||+||++.|+++ |++||.-     .++...- .+.
T Consensus       178 adf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L-----SQL~aYr-~~~  251 (1431)
T KOG1240|consen  178 ADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL-----SQLLAYR-SGN  251 (1431)
T ss_pred             ccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccH-----HHHHhHh-ccC
Confidence            111   12223445799999886521        1124789999999999999997 6777741     2222221 111


Q ss_pred             CCCCCC-CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         148 GLRPDT-SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       148 ~~~p~~-~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ...+.. ...--+..+++++..|++.||++|.++++.++.
T Consensus       252 ~~~~e~~Le~Ied~~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  252 ADDPEQLLEKIEDVSLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             ccCHHHHHHhCcCccHHHHHHHHHccCchhccCHHHHHHh
Confidence            111100 000113478999999999999999999988764

>KOG3618|consensus

Probab=99.59  E-value=8.4e-16  Score=156.29  Aligned_cols=109  Identities=26%  Similarity=0.398  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHhhCcHHHHHHHh-CCCC-----------------------CC---------CccccceeEEEeec
Q psy1840         303 NQLTQEKKKTDALLHRMLPRSVSESLK-RGDF-----------------------VE---------PESFDSVTIYFSDI  349 (423)
Q Consensus       303 ~~l~~e~~~~~~ll~~~lp~~ia~~l~-~g~~-----------------------~~---------~~~~~~vtv~f~di  349 (423)
                      ++||.||+-.|+...+.+|+-||+.|. +|..                       |.         -..-++|+|+||||
T Consensus       269 kdLE~EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~nd~~~~~~~s~~~r~~~s~~vk~~~~FRPF~M~~menVSILFADI  348 (1318)
T KOG3618|consen  269 KDLEVEKQLKERMIHSVMPRKVADDLLKQGDEPSENDVKRHATSSPKNRKKKSSIVKAPIAFRPFKMQQMENVSILFADI  348 (1318)
T ss_pred             hhhHHHHHHHHHHHHhhcChHHHHHHHhhcCCCCcccccCCCCCCcccccchhhccccccccCchhhhhhhhhhhhhhhh
Confidence            468999999999999999999999764 3430                       00         01248999999999


Q ss_pred             cccccccccCCHhHHHHhhhccch-hh--------hhccC-CCceEEEeecccCCCcchHHHHhhhhhhchH
Q psy1840         350 VGFTQLSAESTETGRVTTRDSRRT-PD--------LKVGG-SNPRQVITGTDMLRHRPHESKVSLALSSLSI  411 (423)
Q Consensus       350 ~gft~~~~~~~p~~~v~~ln~~~~-fd--------~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  411 (423)
                      ||||.+++..++.++|.+|||+|. ||        ++|.+ ||||.|+.|.|..+-+|+...+.|+|.|..+
T Consensus       349 vGFTkMSsnKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTLGDCYYCVaGCPEPraDHA~ccvEMGLgMI~A  420 (1318)
T KOG3618|consen  349 VGFTKMSSNKSAHALVGLLNDLFGRFDRLCELTGCEKISTLGDCYYCVAGCPEPRADHAYCCVEMGLGMIKA  420 (1318)
T ss_pred             hchhhccccccHHHHHHHHHHHHHHHHHHHHhcCcchhccccceeeeecCCCCCcccceeeehhhcchHHHH
Confidence            999999999999999999999999 99        77888 9999999999999877777777887776543

>KOG3619|consensus

Probab=99.56  E-value=1.2e-15  Score=161.61  Aligned_cols=113  Identities=25%  Similarity=0.329  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHhCCCC--------------CCCccccceeEEEeeccccccccccCCHh
Q psy1840         297 LVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDF--------------VEPESFDSVTIYFSDIVGFTQLSAESTET  362 (423)
Q Consensus       297 ~v~~~~~~l~~e~~~~~~ll~~~lp~~ia~~l~~g~~--------------~~~~~~~~vtv~f~di~gft~~~~~~~p~  362 (423)
                      .++.+ -.++.|+++.++||.+++|+.||.++++.-.              .--+.|++|+|+||||||||.+++.++++
T Consensus        55 ~i~~r-~~l~~~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~nVSIl~adivgft~l~s~~saq  133 (867)
T KOG3619|consen   55 CIEVR-MELETEKQQQERLLLSVLPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHDNVSILFADIVGFTQLASQCSAQ  133 (867)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhhhccchhheeeccchHhhHHHHhhhhhhhcCCCHH
Confidence            44444 4589999999999999999999998885411              22356999999999999999999999999


Q ss_pred             HHHHhhhccch-hhhh--------ccC-CCceEEEeecccCCCcchHHHHhhhhhhch
Q psy1840         363 GRVTTRDSRRT-PDLK--------VGG-SNPRQVITGTDMLRHRPHESKVSLALSSLS  410 (423)
Q Consensus       363 ~~v~~ln~~~~-fd~~--------~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  410 (423)
                      ++|.+||++|. ||.+        |+- ||||.|++|+|..+++|+...+.|.|+|..
T Consensus       134 elv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~dHA~~~v~mgl~Mi~  191 (867)
T KOG3619|consen  134 ELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARPDHAVCCVEMGLDMIK  191 (867)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCCChhHHHHHHHHHHHHHH
Confidence            99999999999 9954        444 899999999998886666666667666654

>KOG0606|consensus

Probab=99.55  E-value=6.5e-15  Score=156.31  Aligned_cols=140  Identities=23%  Similarity=0.298  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-------------ccccccccCCccccCCccc
Q psy1840          32 ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-------------TGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        32 i~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-------------~~~~~~~~gt~~y~APE~l   98 (423)
                      .+.+++|||+.||+ |||+||+|.+|+.-|++|++|||+++.......             .......+||+.|.|||++
T Consensus       152 mvla~Eylh~ygiv-hrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVi  230 (1205)
T KOG0606|consen  152 MVLAVEYLHSYGIV-HRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVI  230 (1205)
T ss_pred             hhHHhHhhccCCee-cCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhh
Confidence            37899999999998 999999999999999999999999765321110             0112456899999999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      ....|   +..+|.|++|+|+||.+-|..||.  +.+++++...+.......|.. ....+++.++++.+.+..+|..|-
T Consensus       231 lrqgy---gkpvdwwamGiIlyeFLVgcvpff--Gdtpeelfg~visd~i~wpE~-dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  231 LRQGY---GKPVDWWAMGIILYEFLVGCVPFF--GDTPEELFGQVISDDIEWPEE-DEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             hhhcc---CCCccHHHHHHHHHHHheeeeecc--CCCHHHHHhhhhhhhcccccc-CcCCCHHHHHHHHHHHHhChHhhc
Confidence            87766   889999999999999999999997  467888888877665555655 456789999999999999999994

>KOG4158|consensus

Probab=99.54  E-value=6.3e-14  Score=134.99  Aligned_cols=186  Identities=20%  Similarity=0.227  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc--CC--ccEEEeccCCcccccC---CC-cccccccccCCccccCCc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID--SR--WVLQIADFGLHAFKAG---QD-ETGQERKLRRRKLYKAPE   96 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld--~~--~~vKL~DFGla~~~~~---~~-~~~~~~~~~gt~~y~APE   96 (423)
                      +.-++.|+++|+.|||++|+- |||||++|||+.  ++  -.+.|+|||++---..   +- .....-...|+-.-||||
T Consensus       343 ~~~~laQlLEav~hL~~hgvA-hRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPE  421 (598)
T KOG4158|consen  343 GRVILAQLLEAVTHLHKHGVA-HRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPE  421 (598)
T ss_pred             HHHHHHHHHHHHHHHHHccch-hhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchh
Confidence            467889999999999999998 999999999993  33  3578899998532111   00 111122345677799999


Q ss_pred             cccCCC---CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcC
Q psy1840          97 LLRQPH---LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEED  173 (423)
Q Consensus        97 ~l~~~~---~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~d  173 (423)
                      +...-+   ....-.|+|.|+.|.+.||+++...||...+...   +..-.......|.. +..+++.+.+++...++.|
T Consensus       422 i~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~---L~~r~Yqe~qLPal-p~~vpp~~rqlV~~lL~r~  497 (598)
T KOG4158|consen  422 IATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEML---LDTRTYQESQLPAL-PSRVPPVARQLVFDLLKRD  497 (598)
T ss_pred             hhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchhe---echhhhhhhhCCCC-cccCChHHHHHHHHHhcCC
Confidence            986532   1122468999999999999999999997522111   11100111122333 3468999999999999999


Q ss_pred             CCCCCCHHHHHHHHH--------HHhhhcCCChHHHHHHHHHHhhhcccc
Q psy1840         174 PELRPDLRFVHHKLK--------EMNAGLKANIFDNMLAIMEKYAFNLEG  215 (423)
Q Consensus       174 P~~RPt~~~I~~~L~--------~i~~~~~~~~~d~~~~~~e~~~~~lE~  215 (423)
                      |.+|++..-....|.        .+......+....+...+..-+..+-+
T Consensus       498 pskRvsp~iAANvl~LsLw~~~~~vka~~~~~~~~~~~wLL~~sskvl~~  547 (598)
T KOG4158|consen  498 PSKRVSPNIAANVLNLSLWRMGEDVKAMMEKCGISQMTWLLAGSSKVLSQ  547 (598)
T ss_pred             ccccCCccHHHhHHHHHHhcCchHHHHhcccccHHHHHHHHHhhHHHHhc
Confidence            999988654333322        122233345555555555555544443

>KOG1290|consensus

Probab=99.53  E-value=2.4e-14  Score=140.82  Aligned_cols=95  Identities=23%  Similarity=0.300  Sum_probs=63.9

Q ss_pred             CccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCC---CCCCC-hHHHHHHHh------------cCCC----
Q psy1840          89 RKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWG---HLRMT-DEEIITSVT------------QGSG----  148 (423)
Q Consensus        89 t~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~---~~~~~-~~~i~~~i~------------~~~~----  148 (423)
                      |..|.|||++.+..|   +..+||||++|+++||+||-.-|.   +...+ +++.+..+.            .|+.    
T Consensus       414 TRQYRapEVllGsgY---~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdF  490 (590)
T KOG1290|consen  414 TRQYRAPEVLLGSGY---STSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKYSRDF  490 (590)
T ss_pred             hhhccCcceeecCCC---CCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhh
Confidence            445999999999877   999999999999999999987663   11111 222222222            1110    


Q ss_pred             ------------CCCCC----------CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         149 ------------LRPDT----------SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       149 ------------~~p~~----------~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                  ++|..          ....-..++.+++.-||+.+|++|||+.+.++.
T Consensus       491 Fnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~h  550 (590)
T KOG1290|consen  491 FNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLKH  550 (590)
T ss_pred             hccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhcC
Confidence                        00100          001123568889999999999999999998754

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.52  E-value=1.7e-13  Score=130.83  Aligned_cols=161  Identities=19%  Similarity=0.272  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCccc----ccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDETG----QERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~~----~~~~~~gt~~y~APE~l~   99 (423)
                      ...+..|++.|+.|+|+.+++ |||+||+||+++..+ .++++|||.+..........    ......++..|++||.+.
T Consensus       103 ~~~~~~~~~~~l~~~H~~~~~-hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~  181 (384)
T COG0515         103 ALFILAQILSALEYLHSKGII-HRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLL  181 (384)
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhc
Confidence            578999999999999999987 999999999999988 79999999987544332211    235667889999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC--ChHHHHHHHhcCCCC-CCCCCCCC----chHHHHHHHHHhhhc
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM--TDEEIITSVTQGSGL-RPDTSSLD----CAPSIIACMRTCWEE  172 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~--~~~~i~~~i~~~~~~-~p~~~~~~----~~~~l~~Li~~C~~~  172 (423)
                      +......+...|+||+|++++++++|..||.....  ........+...... ........    ....+.+++..|+..
T Consensus       182 ~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (384)
T COG0515         182 GLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAK  261 (384)
T ss_pred             CCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHHHHHHHHHHHhc
Confidence            73101238899999999999999999999764432  133444444433211 11111111    125788999999999


Q ss_pred             CCCCCCCHHHHHHH
Q psy1840         173 DPELRPDLRFVHHK  186 (423)
Q Consensus       173 dP~~RPt~~~I~~~  186 (423)
                      +|..|.+.......
T Consensus       262 ~~~~r~~~~~~~~~  275 (384)
T COG0515         262 DPKNRLSSSSDLSH  275 (384)
T ss_pred             CchhcCCHHHHhhc
Confidence            99999988776553

>KOG1033|consensus

Probab=99.52  E-value=7e-15  Score=146.47  Aligned_cols=147  Identities=21%  Similarity=0.354  Sum_probs=106.9

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCC----cccccccccCCccc
Q psy1840          17 SPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD----ETGQERKLRRRKLY   92 (423)
Q Consensus        17 ~~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~----~~~~~~~~~gt~~y   92 (423)
                      .+|..   .+.++.|++.|++|   ++.+ |+|+||.||+...+..+||+|||+........    .........||..|
T Consensus       356 ~s~s~---~~~~~~q~~~~~~y---k~~i-hrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~Y  428 (516)
T KOG1033|consen  356 RSLSL---MLDIFKQIAPAVEY---KGLI-HRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLY  428 (516)
T ss_pred             cchhH---HHHHHHhhccchhh---ccch-hhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhccccccc
Confidence            34554   57899999999999   8888 99999999999999999999999976544333    11223456799999


Q ss_pred             cCCccccCCCCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhh
Q psy1840          93 KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWE  171 (423)
Q Consensus        93 ~APE~l~~~~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~  171 (423)
                      |+||.+.+..+   +.++||||||+|++|++. -..++.     .......+..+  ..|+....+.+ .-..++++++.
T Consensus       429 msPEQi~g~~y---~~kvdIyaLGlil~EL~~~f~T~~e-----r~~t~~d~r~g--~ip~~~~~d~p-~e~~ll~~lls  497 (516)
T KOG1033|consen  429 MSPEQIRGQQY---SEKVDIYALGLILAELLIQFSTQFE-----RIATLTDIRDG--IIPPEFLQDYP-EEYTLLQQLLS  497 (516)
T ss_pred             CCHHHHhhhhh---hhhcchhhHHHHHHHHHHHhccHHH-----HHHhhhhhhcC--CCChHHhhcCc-HHHHHHHHhcC
Confidence            99999998876   999999999999999997 233332     11122223333  22322222333 44579999999


Q ss_pred             cCCCCCCCHH
Q psy1840         172 EDPELRPDLR  181 (423)
Q Consensus       172 ~dP~~RPt~~  181 (423)
                      ..|.+||++.
T Consensus       498 ~~p~~RP~~~  507 (516)
T KOG1033|consen  498 PSPEERPSAI  507 (516)
T ss_pred             CCcccCchHH
Confidence            9999999443

>KOG1164|consensus

Probab=99.51  E-value=3.3e-13  Score=132.62  Aligned_cols=164  Identities=18%  Similarity=0.186  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-----ccEEEeccCCccccc--CCCc-----c-cccccccCCcc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-----WVLQIADFGLHAFKA--GQDE-----T-GQERKLRRRKL   91 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-----~~vKL~DFGla~~~~--~~~~-----~-~~~~~~~gt~~   91 (423)
                      .+.++.|++.+|++||+.|++ ||||||.|+++...     ..+.|.|||+++...  ....     . .......||..
T Consensus       124 ~l~ia~q~l~~l~~lH~~G~i-HRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~r  202 (322)
T KOG1164|consen  124 VLRIAIQNLNALEDLHSKGFI-HRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLR  202 (322)
T ss_pred             HHHHHHHHHHHHHHHHhcCcc-cCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccc
Confidence            589999999999999999999 99999999999754     469999999998322  1111     1 11234569999


Q ss_pred             ccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChH-HHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhh
Q psy1840          92 YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDE-EIITSVTQGSGLRPDTSSLDCAPSIIACMRTCW  170 (423)
Q Consensus        92 y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~-~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~  170 (423)
                      |+++....+...   +.+.|+||++.++.|++.|..||........ .-............  .....+.++..++..+-
T Consensus       203 y~S~~~H~~~e~---~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  277 (322)
T KOG1164|consen  203 YASINVHLGIEQ---GRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDR--FGDLKPEEFAKILEYID  277 (322)
T ss_pred             cccHHHhCCCcc---CCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhcccc--ccCCChHHHHHHHHHhh
Confidence            999998888765   8999999999999999999999975543222 11111111111110  12235678888888888


Q ss_pred             hcCCCCCCCHHHHHHHHHHHhhhc
Q psy1840         171 EEDPELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       171 ~~dP~~RPt~~~I~~~L~~i~~~~  194 (423)
                      ..+...+|....+...++......
T Consensus       278 ~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  278 SLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             ccCCcCCCCHHHHHHHHHHHHHhc
Confidence            899999999999998887766543

>KOG1167|consensus

Probab=99.50  E-value=3.5e-14  Score=137.64  Aligned_cols=159  Identities=20%  Similarity=0.284  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccC--------C------Cc----------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAG--------Q------DE----------   79 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~--------~------~~----------   79 (423)
                      ....+..+..||.|+|++||| |||+||+|+|.+. -+.-.|.|||++.....        .      ..          
T Consensus       134 i~~Yl~~ll~Al~~~h~~GIv-HRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~  212 (418)
T KOG1167|consen  134 IRWYLRNLLKALAHLHKNGIV-HRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQS  212 (418)
T ss_pred             HHHHHHHHHHHhhhhhccCcc-ccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccc
Confidence            356788999999999999999 9999999999974 45678999999761100        0      00          


Q ss_pred             ------c------------cccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHH
Q psy1840          80 ------T------------GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIIT  141 (423)
Q Consensus        80 ------~------------~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~  141 (423)
                            .            ...-...||++|.|||++..-.  .-+.+.||||-|+|+..++++..||.....+...+.+
T Consensus       213 ~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~--~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~e  290 (418)
T KOG1167|consen  213 VATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCP--RQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAE  290 (418)
T ss_pred             cccccCCCCceeccCCCccceecccCCCCCCCchHHHhhcc--CcCCccceeeccceeehhhccccccccCccccchHHH
Confidence                  0            0001245889999999987532  3388999999999999999999998543222211111


Q ss_pred             HHh-------------cCC-------------------------CCC--------CCCCCCCchHHHHHHHHHhhhcCCC
Q psy1840         142 SVT-------------QGS-------------------------GLR--------PDTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus       142 ~i~-------------~~~-------------------------~~~--------p~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                      .+.             .|.                         ...        +.......+..+.+++.+|++.||.
T Consensus       291 i~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~  370 (418)
T KOG1167|consen  291 IATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQ  370 (418)
T ss_pred             HHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChh
Confidence            100             000                         000        1111123455899999999999999


Q ss_pred             CCCCHHHHHHH
Q psy1840         176 LRPDLRFVHHK  186 (423)
Q Consensus       176 ~RPt~~~I~~~  186 (423)
                      +|.|+++.++.
T Consensus       371 kRitAEeALkH  381 (418)
T KOG1167|consen  371 KRITAEDALKH  381 (418)
T ss_pred             hcccHHHHhcC
Confidence            99999987653

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.49  E-value=8.7e-15  Score=139.44  Aligned_cols=137  Identities=18%  Similarity=0.223  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC---
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP---  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~---  101 (423)
                      ++.+..|+++-+++||+.|++ |+||+|+|++++.+|.+.|+||+.......  ...  . ...+..|.+||.....   
T Consensus       147 rl~lT~Q~I~lvA~Lh~~GlV-Hgdi~~~nfll~~~G~v~Lg~F~~~~r~g~--~~~--~-~~~~~~~~PPe~~~~~~~~  220 (288)
T PF14531_consen  147 RLSLTVQMIRLVANLHSYGLV-HGDIKPENFLLDQDGGVFLGDFSSLVRAGT--RYR--C-SEFPVAFTPPELESCAGQF  220 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-EST-SGGGEEE-TTS-EEE--GGGEEETTE--EEE--G-GGS-TTTS-HHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHhhcceE-ecccceeeEEEcCCCCEEEcChHHHeecCc--eee--c-cCCCcccCChhhhhhhccc
Confidence            678889999999999999988 999999999999999999999986433211  111  0 2234668999977442   


Q ss_pred             --CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         102 --HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       102 --~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                        ....++.+.|.|++|+++|.|+++..||......   .....      .-.... +.|+.++.||..+|+.||++|
T Consensus       221 ~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~---~~~~~------~f~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  221 GQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPE---ADPEW------DFSRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGG---STSGG------GGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             CcccceeeeccCHHHHHHHHHHHHHccCCCCCCCcc---ccccc------cchhcC-CcCHHHHHHHHHHccCCcccC
Confidence              1113488999999999999999999999742110   00000      011122 678999999999999999988

>KOG0603|consensus

Probab=99.46  E-value=3.1e-14  Score=144.43  Aligned_cols=132  Identities=20%  Similarity=0.321  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG  106 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~  106 (423)
                      .....++.+++++|+.+++ |||+|++||+++.+|++|+.|||+++.......      .+||..|||||++.+.     
T Consensus       101 ~~~aelaLald~lh~l~ii-yrd~k~enilld~~Ghi~~tdfglske~v~~~~------~cgt~eymApEI~~gh-----  168 (612)
T KOG0603|consen  101 FYLAELALALDHLHKLGIA-YRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI------ACGTYEYRAPEIINGH-----  168 (612)
T ss_pred             HHHHHHHHHHhhcchhHHH-HhcccccceeecccCccccCCchhhhHhHhhhh------cccchhhhhhHhhhcc-----
Confidence            4566788999999999998 999999999999999999999999886543322      2889999999999832     


Q ss_pred             CCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         107 TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       107 s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ...+|.||||++++|+++|..||..      ++...|.......|.    ..+..+..++.++...+|.+|--.
T Consensus       169 ~~a~D~ws~gvl~felltg~~pf~~------~~~~~Il~~~~~~p~----~l~~~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  169 LSAADWWSFGVLAFELLTGTLPFGG------DTMKRILKAELEMPR----ELSAEARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             CCcccchhhhhhHHHHhhCCCCCch------HHHHHHhhhccCCch----hhhHHHHHHHHHHHhhCHHHHhcc
Confidence            7899999999999999999999974      566666554444333    467788899999999999999543

>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain

Probab=99.35  E-value=1.3e-12  Score=118.78  Aligned_cols=88  Identities=47%  Similarity=0.566  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhhCcHHHHHHHhCCC-CCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCce
Q psy1840         307 QEKKKTDALLHRMLPRSVSESLKRGD-FVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPR  384 (423)
Q Consensus       307 ~e~~~~~~ll~~~lp~~ia~~l~~g~-~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~  384 (423)
                      +|++++.+||.+++|++|+++|..|+ ...+..+.+|||+|+||+|||.+++..+|.+++.+||++|. +++++..++.+
T Consensus         1 ~~~~~~~~ll~~~lP~~v~~~l~~g~~~~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~   80 (194)
T smart00044        1 EEKRKTDRLLDQLLPASVAESLKRGGSPVPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRIIDRHGGY   80 (194)
T ss_pred             ChHHHHHHHHHHhCCHHHHHHHHhCCCCccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCeE
Confidence            37899999999999999999999997 66778899999999999999999999999999999999999 99999999999


Q ss_pred             EEEeecccCC
Q psy1840         385 QVITGTDMLR  394 (423)
Q Consensus       385 ~v~~~~~~~~  394 (423)
                      .+.+.||.++
T Consensus        81 v~~~~Gd~~l   90 (194)
T smart00044       81 KVKTIGDAYM   90 (194)
T ss_pred             EEEEeCCEEE
Confidence            9999999888

Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.

>KOG1163|consensus

Probab=99.19  E-value=5.9e-11  Score=107.89  Aligned_cols=165  Identities=16%  Similarity=0.237  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc---CCccEEEeccCCcccccCCCcc-----cccccccCCccccCCcc
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLID---SRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAPEL   97 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld---~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE~   97 (423)
                      +-++.|++.-++|+|.++.| ||||||+|.|..   ....+-++|||+++...+....     .......||..|.+--.
T Consensus       114 LMLaDQml~RiEyvH~r~fi-HRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinA  192 (341)
T KOG1163|consen  114 LMLADQMLSRIEYVHLRNFI-HRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINA  192 (341)
T ss_pred             HHHHHHHHHHHHHHHhhccc-cccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhh
Confidence            67889999999999999999 999999999985   3457889999999865433221     22244568888888766


Q ss_pred             ccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-HHHHHHHhcCCCCCC-CCCCCCchHHHHHHHHHhhhcCCC
Q psy1840          98 LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-EEIITSVTQGSGLRP-DTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus        98 l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-~~i~~~i~~~~~~~p-~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                      ..+...   +...|+-|+|.++...-.|..||++..... .+-.+++...+..-| ...-...|.++...+..|-..--+
T Consensus       193 h~g~eq---SRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~  269 (341)
T KOG1163|consen  193 HLGIEQ---SRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFE  269 (341)
T ss_pred             hhhhhh---hhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCC
Confidence            655443   788999999999999999999998764433 333444444332222 112256889999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhhc
Q psy1840         176 LRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       176 ~RPt~~~I~~~L~~i~~~~  194 (423)
                      +-|+..-+.+.+.-+....
T Consensus       270 E~Pdy~ylrqlFriLfr~l  288 (341)
T KOG1163|consen  270 EKPDYMYLRQLFRILFRTL  288 (341)
T ss_pred             CCCcHHHHHHHHHHHHhhc
Confidence            9999988888777666544

>KOG1165|consensus

Probab=99.19  E-value=2e-10  Score=108.79  Aligned_cols=163  Identities=15%  Similarity=0.236  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-----CccEEEeccCCcccccCCCc-----ccccccccCCccccCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-----RWVLQIADFGLHAFKAGQDE-----TGQERKLRRRKLYKAP   95 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-----~~~vKL~DFGla~~~~~~~~-----~~~~~~~~gt~~y~AP   95 (423)
                      +.++.|++.-++|+|++.+| .|||||+|.||..     ...+.++|||+++...+...     ........||..||+-
T Consensus       127 ~miA~Qmi~rie~vH~k~LI-YRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSI  205 (449)
T KOG1165|consen  127 AMIAKQMITRIEYVHEKDLI-YRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSI  205 (449)
T ss_pred             HHHHHHHHHHHHHHHhccee-ecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEe
Confidence            67899999999999999999 9999999999964     34689999999987654332     2234567799999998


Q ss_pred             ccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcCCCCCCC-CCCCCchHHHHHHHHHhhhcC
Q psy1840          96 ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQGSGLRPD-TSSLDCAPSIIACMRTCWEED  173 (423)
Q Consensus        96 E~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~~~~~p~-~~~~~~~~~l~~Li~~C~~~d  173 (423)
                      -...+...   +...|.-|+|-+++..+.|..||.+... +.++-.++|-..+..-|. ..-.++|.++...+...-..+
T Consensus       206 NTHlGrEQ---SRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~  282 (449)
T KOG1165|consen  206 NTHLGREQ---SRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRSTPIEVLCEGFPEEFATYLRYVRRLD  282 (449)
T ss_pred             eccccchh---hhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccCCHHHHHhcCHHHHHHHHHHHHhcC
Confidence            87777655   8899999999999999999999988643 445556666554332221 112467889999999888888


Q ss_pred             CCCCCCHHHHHHHHHHHhh
Q psy1840         174 PELRPDLRFVHHKLKEMNA  192 (423)
Q Consensus       174 P~~RPt~~~I~~~L~~i~~  192 (423)
                      -++-|+.+-+...+..+..
T Consensus       283 F~E~PDYdylr~Lf~dvld  301 (449)
T KOG1165|consen  283 FFETPDYDYLRKLFDDVLD  301 (449)
T ss_pred             cccCCCHHHHHHHHHHHHH
Confidence            8999999988777666554

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.14  E-value=4.8e-11  Score=118.37  Aligned_cols=76  Identities=22%  Similarity=0.247  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCC-CCCCEEEcCCccEEEeccCCcccccCCCccc------ccccccCCccccCCccc
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNL-RSSNCLIDSRWVLQIADFGLHAFKAGQDETG------QERKLRRRKLYKAPELL   98 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDL-kp~NILld~~~~vKL~DFGla~~~~~~~~~~------~~~~~~gt~~y~APE~l   98 (423)
                      ..++.|+++||.|||+.|++ |||| ||+|||++.++.+||+|||+++.........      ......+++.|+|||.+
T Consensus       114 ~~~~~~i~~aL~~lH~~gIi-HrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~  192 (365)
T PRK09188        114 PAWFRSAHRALRDLHRAGIT-HNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDAL  192 (365)
T ss_pred             HHHHHHHHHHHHHHHHCCCe-eCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccC
Confidence            57899999999999999998 9999 9999999999999999999988654332111      11345677789999999


Q ss_pred             cCCC
Q psy1840          99 RQPH  102 (423)
Q Consensus        99 ~~~~  102 (423)
                      ....
T Consensus       193 ~~~~  196 (365)
T PRK09188        193 TPRE  196 (365)
T ss_pred             Chhh
Confidence            7643

>KOG0590|consensus

Probab=99.05  E-value=3.6e-11  Score=126.78  Aligned_cols=157  Identities=21%  Similarity=0.280  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHH-hCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccC-CCcccccccccC-CccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLH-DSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAG-QDETGQERKLRR-RKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH-~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~-~~~~~~~~~~~g-t~~y~APE~l~~  100 (423)
                      +=....|+..|+.|+| ..++. |+|+||+|.+++.++ ..|++|||++..... ..........+| ++.|+|||...+
T Consensus       125 ~~~~~~ql~s~l~~~H~~~~~~-h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~  203 (601)
T KOG0590|consen  125 ASRYLPQLNSGLSYLHPENGVT-HRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSG  203 (601)
T ss_pred             hhhhhhhhccCccccCcccccc-cCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccc
Confidence            3467889999999999 88887 999999999999999 999999999886654 333334445567 899999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+  .....|+||.|+++.-+++|..|+................. ...-..+.........+++..++..+|+.|.+.
T Consensus       204 ~~~--~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~  280 (601)
T KOG0590|consen  204 KAY--RGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNK-GRFTQLPWNSISDQAHDLLHKILKENPSNRLSI  280 (601)
T ss_pred             hhh--cCCCcccccccccccccccCCCCccccccccccceeecccc-cccccCccccCChhhhhcccccccCCchhcccc
Confidence            532  37889999999999999999999865433222222222221 111122344667888999999999999999998


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .++..
T Consensus       281 ~~~~~  285 (601)
T KOG0590|consen  281 EELKL  285 (601)
T ss_pred             ccccc
Confidence            88754

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.00  E-value=5.6e-10  Score=101.76  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCC-CCCCEEEcCCccEEEeccCCcccccCCCcc----cc-------cccccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNL-RSSNCLIDSRWVLQIADFGLHAFKAGQDET----GQ-------ERKLRRRKLY   92 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDL-kp~NILld~~~~vKL~DFGla~~~~~~~~~----~~-------~~~~~gt~~y   92 (423)
                      ...+..|++.++.++|+.|++ |||| ||.|||++.++.++|+|||++.........    ..       ......++.|
T Consensus        93 ~~~~~~qi~~~L~~lH~~GIv-HrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~  171 (218)
T PRK12274         93 DLAYFRAARRLLQQLHRCGVA-HNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAA  171 (218)
T ss_pred             hHHHHHHHHHHHHHHHHCcCc-cCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            356888999999999999998 9999 799999999999999999998754322210    00       0111244556


Q ss_pred             cCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCC
Q psy1840          93 KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWG  130 (423)
Q Consensus        93 ~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~  130 (423)
                      ++|+.-..-.. ..-...+-++.|.-+|.++||..++.
T Consensus       172 l~~~~~~~l~~-~~~~~~~w~~~g~~~~~~~~~~~~~~  208 (218)
T PRK12274        172 LTPVERRVLKR-TSWIRELWFATGKPVYRFVTRRVLHW  208 (218)
T ss_pred             CCHHHHhhhcc-chhHHHHHHHhcchHHHHHhccCCcc
Confidence            66664432211 11256788889999999999998864

>KOG1166|consensus

Probab=98.91  E-value=7.6e-09  Score=112.30  Aligned_cols=157  Identities=17%  Similarity=0.144  Sum_probs=107.1

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-------CCccEEEeccCCcccccCCCcccccccccC
Q psy1840          16 LSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLID-------SRWVLQIADFGLHAFKAGQDETGQERKLRR   88 (423)
Q Consensus        16 ~~~~~~p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-------~~~~vKL~DFGla~~~~~~~~~~~~~~~~g   88 (423)
                      .++|.+   -+.|+.|++.-+++||..+|| ||||||+|++|.       ....++|+|||.+--..-..........++
T Consensus       790 ~m~e~l---v~~~~~qml~ive~lH~~~II-HgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~  865 (974)
T KOG1166|consen  790 VMDEYL---VMFFSCQMLRIVEHLHAMGII-HGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWH  865 (974)
T ss_pred             CCCchh---hhHHHHHHHHHHHHHHhccee-cccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeec
Confidence            456666   679999999999999999999 999999999993       345799999998753222222223345677


Q ss_pred             CccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC-CCCCchHH-HHHHH
Q psy1840          89 RKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT-SSLDCAPS-IIACM  166 (423)
Q Consensus        89 t~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~-~~~~~~~~-l~~Li  166 (423)
                      |-.+-++|+..|..+   +..+|-|.++-+++-|+.|+.-            + +..+....+.. .......+ ..++.
T Consensus       866 td~f~C~EM~~grpW---tYq~DyfGlAa~~h~mLFG~y~------------q-~~~g~~~~~~~~~~Ry~~~~~W~~~F  929 (974)
T KOG1166|consen  866 TDLFDCIEMREGRPW---TYQIDYFGLAATVHVMLFGKYM------------E-VKNGSSWMVKTNFPRYWKRDMWNKFF  929 (974)
T ss_pred             cccchhHHHhcCCCC---chhhhhHHHHHHHHHHHHHHHH------------H-hcCCcceeccccchhhhhHHHHHHHH
Confidence            888999999999888   9999999999999999987521            1 22221111111 11112222 33466


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHhh
Q psy1840         167 RTCWEEDPELRPDLRFVHHKLKEMNA  192 (423)
Q Consensus       167 ~~C~~~dP~~RPt~~~I~~~L~~i~~  192 (423)
                      ..+|+.|-..=|...++...++++..
T Consensus       930 ~~lLN~~~~~~p~l~~lr~~~~~~~~  955 (974)
T KOG1166|consen  930 DLLLNPDCDTLPNLQELRTELEEVLA  955 (974)
T ss_pred             HHHhCcCcccchhHHHHHHHHHHHHH
Confidence            67777444444677777776665543

>KOG2137|consensus

Probab=98.79  E-value=3.2e-09  Score=109.68  Aligned_cols=152  Identities=18%  Similarity=0.252  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-------cccccccCCccccCCcccc
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-------GQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-------~~~~~~~gt~~y~APE~l~   99 (423)
                      .=+.+.+.|+.|+|.+.-++|++|.|++|.++.++.+||+.|+.+....+....       ...........|.|||++.
T Consensus       103 ~nl~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  103 ANLGNVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhhhcccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            334566689999999855559999999999999999999999986544332111       1111223445699999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCC-CCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGS-GLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~-~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                      +...   +.++|+||+|+++|-+.. |+.-+...+..   +........ ..........++.++.+-+.+.+..++..|
T Consensus       183 ~~~~---~~~sd~fSlG~li~~i~~~gk~i~~a~~~~---~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~r  256 (700)
T KOG2137|consen  183 GTTN---TPASDVFSLGVLIYTIYNGGKSIIAANGGL---LSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVR  256 (700)
T ss_pred             cccc---cccccceeeeeEEEEEecCCcchhhccCCc---chhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccC
Confidence            7544   899999999999999984 44333322111   111111111 011111224789999999999999999999


Q ss_pred             CCHHHHH
Q psy1840         178 PDLRFVH  184 (423)
Q Consensus       178 Pt~~~I~  184 (423)
                      |++..+.
T Consensus       257 p~~~~l~  263 (700)
T KOG2137|consen  257 PTLDLLL  263 (700)
T ss_pred             cchhhhh
Confidence            9877663

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.79  E-value=2.3e-09  Score=99.45  Aligned_cols=78  Identities=17%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG  106 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~  106 (423)
                      ....+++.++..+|..|++ |||+||+|++++.++ ++|+|||...........   .           .++....+   
T Consensus       139 ~~~~~i~~~l~~lH~~gi~-H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a~---d-----------~~vler~y---  199 (232)
T PRK10359        139 DVKAKIKASIESLHQHGMV-SGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKAK---D-----------RIDLERHY---  199 (232)
T ss_pred             HHHHHHHHHHHHHHHcCCc-cCCCChHHEEEeCCC-EEEEECCCcccccchhhH---H-----------HHHHHhHh---
Confidence            4567999999999999998 999999999999988 999999986543211100   0           02223333   


Q ss_pred             CCccchHHHHHHHHHHH
Q psy1840         107 TQKGDVYSFGLVLYEVI  123 (423)
Q Consensus       107 s~ksDVyS~Giil~ell  123 (423)
                      ..++|+||||+.+.-..
T Consensus       200 ~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        200 GIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             cccccccceeEeehHHH
Confidence            46899999999876543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.78  E-value=8.2e-09  Score=93.54  Aligned_cols=50  Identities=18%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCccccc
Q psy1840          24 GSISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKA   75 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~   75 (423)
                      ....++.|++.++.++|+ .|++ ||||||+||+++ ++.++|+|||++....
T Consensus       118 ~~~~i~~~l~~~l~~lH~~~giv-HrDlkP~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145         118 EAEELYEQVVEQMRRLYQEAGLV-HGDLSEYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEe-cCCCChhhEEEE-CCCEEEEEcccceecC
Confidence            467999999999999999 9998 999999999999 7899999999987653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.76  E-value=9.4e-09  Score=93.24  Aligned_cols=48  Identities=21%  Similarity=0.160  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHH-HhCCCeeecCCCCCCEEEcCCccEEEeccCCcccc
Q psy1840          25 SISVNTTASVGMIHL-HDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK   74 (423)
Q Consensus        25 ~l~i~~qi~~gL~yL-H~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~   74 (423)
                      ...++.|++.+|.|+ |+.|++ ||||||+||+++ ++.++|+|||++...
T Consensus       119 ~~~i~~qi~~~L~~l~H~~gii-HrDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         119 ARELYLQVIQIMRILYQDCRLV-HADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEEEE-CCcEEEEEccccccC
Confidence            578999999999999 688988 999999999998 478999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4

Probab=98.71  E-value=4.3e-09  Score=94.61  Aligned_cols=58  Identities=26%  Similarity=0.264  Sum_probs=55.8

Q ss_pred             ccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         337 ESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       337 ~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      +.+++|||+|+||+|||.+++..+|.+++.+||++|+ ++.++++++.+.+++.||.++
T Consensus         4 ~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~   62 (184)
T PF00211_consen    4 EQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVM   62 (184)
T ss_dssp             EEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEE
T ss_pred             cccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhccccccccccccccceeE
Confidence            6789999999999999999999999999999999999 999999999999999999988

6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....

>KOG3618|consensus

Probab=98.70  E-value=9.1e-09  Score=105.86  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCcHHHHHHHhCCCCCCCccccceeEEEeecccccccccc--CCHhHHHHhhhccch-hhh
Q psy1840         300 ERTNQLTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLSAE--STETGRVTTRDSRRT-PDL  376 (423)
Q Consensus       300 ~~~~~l~~e~~~~~~ll~~~lp~~ia~~l~~g~~~~~~~~~~vtv~f~di~gft~~~~~--~~p~~~v~~ln~~~~-fd~  376 (423)
                      .-+...+.-+.++|-||.+++|.++||+||...+. .+.++++-|+||.||||.++-.+  -.-.|-...||++.. ||+
T Consensus      1043 ~d~~riQ~mrdQADwLL~NiIP~HvaE~LK~~~kY-SeNH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDFDE 1121 (1318)
T KOG3618|consen 1043 LDRTRIQSMRDQADWLLRNIIPYHVAEQLKVSQKY-SENHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDFDE 1121 (1318)
T ss_pred             hhHHHHHHHHHHHHHHHhccchHHHHHHhhccccc-cccCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccHHH
Confidence            33445677788999999999999999999998776 57889999999999999988654  356788999999998 999


Q ss_pred             hccCC---CceEEEeecccCC
Q psy1840         377 KVGGS---NPRQVITGTDMLR  394 (423)
Q Consensus       377 ~~~~~---~~~~v~~~~~~~~  394 (423)
                      +.++.   -++||+|+|+.||
T Consensus      1122 LLsrPdf~~iEKIKTIG~tyM 1142 (1318)
T KOG3618|consen 1122 LLSRPDFSSIEKIKTIGATYM 1142 (1318)
T ss_pred             HhccccchhhHHHhhhhHHHH
Confidence            99994   5899999999999

>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]

Probab=98.62  E-value=9.6e-08  Score=89.13  Aligned_cols=86  Identities=27%  Similarity=0.248  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHhhCcHHHHHHHhCCCCCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCc
Q psy1840         305 LTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNP  383 (423)
Q Consensus       305 l~~e~~~~~~ll~~~lp~~ia~~l~~g~~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~  383 (423)
                      ...+....+.++...++..+.+++..+. .  .. ..|||+|+||+|||.++....|..++.+||.+|. ++..|..|+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG   89 (227)
T COG2114          14 VAAAGLRSDLVLRLYLARVVGRLLARGG-A--GD-RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGG   89 (227)
T ss_pred             HHhhhhhhhHHHHHHhhhccchhhcccc-c--cC-ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3455666778888899999999999886 2  22 9999999999999999999999999999999999 9999999999


Q ss_pred             eEEEeecccCC
Q psy1840         384 RQVITGTDMLR  394 (423)
Q Consensus       384 ~~v~~~~~~~~  394 (423)
                      ..++++||.++
T Consensus        90 ~v~k~iGD~~l  100 (227)
T COG2114          90 RVVKFIGDGFL  100 (227)
T ss_pred             EEEEEecceEE
Confidence            99999999888

>KOG1266|consensus

Probab=98.61  E-value=3.5e-08  Score=93.76  Aligned_cols=148  Identities=21%  Similarity=0.257  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccC--CCcccccccccCCccccCCccccCCCC
Q psy1840          27 SVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG--QDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~--~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      +|+.||.+||.|||+. ..++|+++..+.|++..+|-+|++--.-...-..  ...........+-+.|.+||.-.....
T Consensus       180 kw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~  259 (458)
T KOG1266|consen  180 KWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNT  259 (458)
T ss_pred             HHHHHHHhhhhhhhccCCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCccccc
Confidence            7999999999999986 4555999999999999999888764322111100  000111122345567999997654443


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCC--CCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGH--LRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~--~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                         +..+|||+||+...||..+..--..  .....++-+..+..+..          ..--..++..|++..|..||++.
T Consensus       260 ---~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~ia~~i~~le----------n~lqr~~i~kcl~~eP~~rp~ar  326 (458)
T KOG1266|consen  260 ---TGASDIYKFGMCALEMAILEIQSTNSESKVEVEENIANVIIGLE----------NGLQRGSITKCLEGEPNGRPDAR  326 (458)
T ss_pred             ---ccchhhhhhhHHHHHHHHheeccCCCcceeehhhhhhhheeecc----------CccccCcCcccccCCCCCCcchh
Confidence               7889999999999999877543211  11222333333322210          01123467899999999999999


Q ss_pred             HHHHHH
Q psy1840         182 FVHHKL  187 (423)
Q Consensus       182 ~I~~~L  187 (423)
                      .++...
T Consensus       327 ~llfHp  332 (458)
T KOG1266|consen  327 LLLFHP  332 (458)
T ss_pred             hhhcCc
Confidence            876543

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.61  E-value=7.7e-07  Score=87.52  Aligned_cols=170  Identities=16%  Similarity=0.258  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC-
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL-  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-  103 (423)
                      .+..+..++.+.+-||.+|.. -||++++|+|+++++.|.|.|-.-..... .  ........|...|++||.-.-+.+ 
T Consensus       119 llrvaRnlA~aFA~lH~~Gh~-vGDVn~~~~lVsd~~~V~LVdsDsfqi~~-n--g~~~~cpVg~~eftPPElQ~~~sf~  194 (637)
T COG4248         119 LLRVARNLASAFATLHEHGHV-VGDVNQNSFLVSDDSKVVLVDSDSFQINA-N--GTLHLCPVGVSEFTPPELQTLPSFV  194 (637)
T ss_pred             HHHHHHHHHHHHHHHHhcCCc-ccccCccceeeecCceEEEEcccceeecc-C--CceEecccCccccCCHHHhcccccc
Confidence            689999999999999999987 89999999999999999998754322211 1  111123457778999998763321 


Q ss_pred             -CCCCCccchHHHHHHHHHHHhC-CCCCCCCCCC---hHHHHHHHh---------cCCCCCCCC---CCCCchHHHHHHH
Q psy1840         104 -PRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMT---DEEIITSVT---------QGSGLRPDT---SSLDCAPSIIACM  166 (423)
Q Consensus       104 -~~~s~ksDVyS~Giil~elltg-~~Pf~~~~~~---~~~i~~~i~---------~~~~~~p~~---~~~~~~~~l~~Li  166 (423)
                       ...+...|-|.+|+++++++.| +.||.+...-   +...-..|.         ++.+.+|..   +..-.++++..+.
T Consensus       195 g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF  274 (637)
T COG4248         195 GFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALF  274 (637)
T ss_pred             ccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHHH
Confidence             1236789999999999999976 8899754210   101111121         222222221   2245688999999


Q ss_pred             HHhhhc--CCCCCCCHHHHHHHHHHHhhhcCCCh
Q psy1840         167 RTCWEE--DPELRPDLRFVHHKLKEMNAGLKANI  198 (423)
Q Consensus       167 ~~C~~~--dP~~RPt~~~I~~~L~~i~~~~~~~~  198 (423)
                      .+|+..  ++.-|||.+..+..|..+..+++...
T Consensus       275 ~qaF~~~~~~~~RP~a~aW~aAl~al~~~L~~C~  308 (637)
T COG4248         275 QQAFTESGVATPRPTAKAWVAALDALRQQLKKCT  308 (637)
T ss_pred             HHHhcccCCCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            999975  36689999999998888776655443

>KOG3619|consensus

Probab=98.50  E-value=2.8e-07  Score=98.77  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHh----CCCCCCCccccceeEEEeeccccccccccCC----HhHHHHhhhc
Q psy1840         299 QERTNQLTQEKKKTDALLHRMLPRSVSESLK----RGDFVEPESFDSVTIYFSDIVGFTQLSAEST----ETGRVTTRDS  370 (423)
Q Consensus       299 ~~~~~~l~~e~~~~~~ll~~~lp~~ia~~l~----~g~~~~~~~~~~vtv~f~di~gft~~~~~~~----p~~~v~~ln~  370 (423)
                      ++..++.+.-+...+.||.|+||.+||...-    ++...-.++|++|-|+||-|.||...=++++    =.|=..+||+
T Consensus       604 ~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~~eLY~qSy~~VgVMFASipnF~dFYsE~d~NneGlECLRlLNE  683 (867)
T KOG3619|consen  604 QEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKKRNEELYHQSYDCVGVMFASIPNFKDFYSECDVNNEGLECLRLLNE  683 (867)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhcccchHHHHHhhhceEEEEEEecCCcceeeeeecCCcccchHHHHHHH
Confidence            4444556666777889999999999999662    2245667889999999999999976644443    3577899999


Q ss_pred             cch-hhhhccC---CCceEEEeecccCC
Q psy1840         371 RRT-PDLKVGG---SNPRQVITGTDMLR  394 (423)
Q Consensus       371 ~~~-fd~~~~~---~~~~~v~~~~~~~~  394 (423)
                      +.+ ||+++++   .+++||+|+|-.||
T Consensus       684 IIaDFDeLL~~pkF~~IEKIKTIGSTYM  711 (867)
T KOG3619|consen  684 IIADFDELLSKPKFSGVEKIKTIGSTYM  711 (867)
T ss_pred             HHhhHHHhcCccccccceeEEEecchhh
Confidence            999 9999995   79999999999999

>KOG0606|consensus

Probab=98.49  E-value=2.3e-07  Score=99.87  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCC---------C-------------------
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ---------D-------------------   78 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~---------~-------------------   78 (423)
                      ..+..+..+.+|||...++ |+|++|.|.++..++..++++||........         .                   
T Consensus       908 s~i~~~vqs~e~L~s~~r~-h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~  986 (1205)
T KOG0606|consen  908 SPILERVQSLESLHSSLRK-HRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSA  986 (1205)
T ss_pred             chhHHHHhhhhccccchhh-cccccccchhhcccCCcccCccccccccccccCcCCcccccccCcccccccccccccccc
Confidence            4556778899999998877 9999999999999999999999842211100         0                   


Q ss_pred             -cccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCC
Q psy1840          79 -ETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLD  157 (423)
Q Consensus        79 -~~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~  157 (423)
                       .........+|+-|.+||...+...   ...+|.|++|++++|.++|..||.  ..+++.+.+.+..+....|..+ ..
T Consensus       987 ~~~~~~~~~~~t~~~laPe~~lg~~h---gs~ad~~~~g~~l~e~l~g~pp~n--a~tpq~~f~ni~~~~~~~p~g~-~~ 1060 (1205)
T KOG0606|consen  987 DEARRKHAVVGTPDYLAPEILLGRRH---GSAADWWSSGVCLFEVLTGIPPFN--AETPQQIFENILNRDIPWPEGP-EE 1060 (1205)
T ss_pred             chhhccccccCCCcccCCcccccccC---CCcchhhhhhhhhhhhhcCCCCCC--CcchhhhhhccccCCCCCCCCc-cc
Confidence             0011234467888999999988765   788999999999999999999997  4566777777777665555443 45


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .+.+...++.+.+..+|.+|-.+.
T Consensus      1061 ~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1061 GSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             cChhhhhhhhhhhccCchhccCcc
Confidence            788999999999999999997654

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.47  E-value=2.2e-07  Score=84.60  Aligned_cols=49  Identities=22%  Similarity=0.227  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK   74 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~   74 (423)
                      ...++.+++.++.++|+.|++ ||||||+||+++.++.++|+|||.+...
T Consensus       127 ~~~~~~~i~~~l~~lh~~gi~-H~Dl~p~Nill~~~~~~~liDfg~~~~~  175 (198)
T cd05144         127 PEEVLDEILEEIVKAYKHGII-HGDLSEFNILVDDDEKIYIIDWPQMVST  175 (198)
T ss_pred             HHHHHHHHHHHHHHHHHCCCC-cCCCCcccEEEcCCCcEEEEECCccccC
Confidence            457899999999999999998 9999999999999999999999997543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.45  E-value=2.2e-07  Score=87.36  Aligned_cols=46  Identities=20%  Similarity=0.299  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      ....+|+.++.+||+.|++ ||||||.|||++.++.++|+|||.+..
T Consensus       146 ~~~~~i~~~l~~lH~~GI~-HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        146 EQWQAIGQLIARFHDAGVY-HADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             HHHHHHHHHHHHHHHCCCC-CCCCCchhEEEcCCCCEEEEECCCccc
Confidence            3467999999999999998 999999999999989999999998765

>smart00090 RIO RIO-like kinase

Probab=98.45  E-value=2.1e-07  Score=87.37  Aligned_cols=47  Identities=19%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHhCC-CeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSE-IISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~-ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      ...++.||+.++.+||+.| ++ ||||||+||+++ ++.++|+|||.+..
T Consensus       150 ~~~i~~qi~~~l~~LH~~g~ii-H~Dikp~NIli~-~~~i~LiDFg~a~~  197 (237)
T smart00090      150 EFELYDDILEEMRKLYKEGELV-HGDLSEYNILVH-DGKVVIIDVSQSVE  197 (237)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEE-eCCCChhhEEEE-CCCEEEEEChhhhc
Confidence            4689999999999999999 87 999999999999 88999999998764

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.30  E-value=9.1e-07  Score=79.40  Aligned_cols=49  Identities=20%  Similarity=0.158  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK   74 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~   74 (423)
                      ....++.+++.++.++|. .+++ ||||||+||+++ ++.++++|||.+...
T Consensus       115 ~~~~~~~~~~~~l~~lh~~~~iv-H~Dl~p~Nili~-~~~~~liDfg~a~~~  164 (187)
T cd05119         115 DPEELYDQILELMRKLYREAGLV-HGDLSEYNILVD-DGKVYIIDVPQAVEI  164 (187)
T ss_pred             cHHHHHHHHHHHHHHHhhccCcC-cCCCChhhEEEE-CCcEEEEECcccccc
Confidence            357899999999999999 8988 999999999999 899999999998644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0601|consensus

Probab=98.28  E-value=5.4e-07  Score=92.01  Aligned_cols=148  Identities=22%  Similarity=0.284  Sum_probs=102.9

Q ss_pred             HHHHHHHH----HHHHHHhCCCeeecCCCCCCEEEcCC-ccEEEeccCCcccccCCCccc---ccccccCCccccCCccc
Q psy1840          27 SVNTTASV----GMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETG---QERKLRRRKLYKAPELL   98 (423)
Q Consensus        27 ~i~~qi~~----gL~yLH~~~ii~HrDLkp~NILld~~-~~vKL~DFGla~~~~~~~~~~---~~~~~~gt~~y~APE~l   98 (423)
                      ....+...    |+.++|+.+++ |-|+||.||+...+ ..++++|||+...+.......   ......+...|++||..
T Consensus       222 ~~~~~~~~~~~~al~~~hs~~~~-~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~  300 (524)
T KOG0601|consen  222 NSLRDWLSRDVTALSHLHSNNIV-HDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELL  300 (524)
T ss_pred             hHHhhhhhcccccccccCCCccc-ccccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhh
Confidence            44555556    99999999998 99999999999999 789999999976654443221   11223566779999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      .+..    +..+|+||+|.++.+..++..+......+.   ...+.+  ...|...-...+.++...+.++++.+|-.|+
T Consensus       301 ~~l~----~~~~di~sl~ev~l~~~l~~~~~~~g~~~~---W~~~r~--~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~  371 (524)
T KOG0601|consen  301 NGLA----TFASDIFSLGEVILEAILGSHLPSVGKNSS---WSQLRQ--GYIPLEFCEGGSSSLRSVTSQMLDEDPRLRL  371 (524)
T ss_pred             cccc----chHhhhcchhhhhHhhHhhcccccCCCCCC---cccccc--ccCchhhhcCcchhhhhHHHHhcCcchhhhh
Confidence            8754    889999999999999998865542110000   000111  1122222234456677799999999999999


Q ss_pred             CHHHHH
Q psy1840         179 DLRFVH  184 (423)
Q Consensus       179 t~~~I~  184 (423)
                      +...+.
T Consensus       372 ~~q~~~  377 (524)
T KOG0601|consen  372 TAQILT  377 (524)
T ss_pred             HHHHHh
Confidence            887654

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.28  E-value=1.2e-06  Score=80.12  Aligned_cols=47  Identities=30%  Similarity=0.508  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      ...++.+++.+|.++|+.+++ |||++|.||+++ ++.++|+|||.+..
T Consensus        97 ~~~i~~~i~~~l~~lH~~~i~-H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         97 ELELSREIGRLVGKLHSAGII-HGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCCcccEEEE-CCCEEEEECCcccC
Confidence            568999999999999999998 999999999999 78899999998654

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.25  E-value=1.3e-06  Score=79.38  Aligned_cols=45  Identities=29%  Similarity=0.451  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      .++.+++.+|.++|+.|++ |||++|.||+++ ++.++++|||++..
T Consensus        94 ~~~~~i~~~l~~lH~~gi~-H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        94 ELLREIGRLVGKLHKAGIV-HGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             HHHHHHHHHHHHHHHCCee-cCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            7899999999999999998 999999999999 78999999998754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK10345 hypothetical protein; Provisional

Probab=98.25  E-value=9.7e-07  Score=81.25  Aligned_cols=44  Identities=16%  Similarity=0.085  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHH-HHHHhCCCeeecCCCCCCEEEcC----CccEEEeccCC
Q psy1840          26 ISVNTTASVGM-IHLHDSEIISHGNLRSSNCLIDS----RWVLQIADFGL   70 (423)
Q Consensus        26 l~i~~qi~~gL-~yLH~~~ii~HrDLkp~NILld~----~~~vKL~DFGl   70 (423)
                      ..++.+++.++ +|||+++|+ ||||||+|||++.    ++.++|+||+.
T Consensus       107 ~~~~~~~L~~l~~yLh~~~Iv-hrDlKp~NILl~~~~~~~~~~~LiDg~G  155 (210)
T PRK10345        107 VAQLRQLLKKLKRYLLDNRIV-TMELKPQNILCQRISESEVIPVVCDNIG  155 (210)
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecCCCHHHEEEeccCCCCCcEEEEECCC
Confidence            35678888888 999999998 9999999999973    44899999544

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.19  E-value=1.5e-06  Score=91.51  Aligned_cols=47  Identities=28%  Similarity=0.461  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      ...++.+++.+|.|||+.+++ ||||||+||++ .++.++|+|||+++.
T Consensus       430 ~~~~~~~i~~~L~~lH~~gii-HrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        430 NPELVRKVGEIVAKLHKAGIV-HGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             HHHHHHHHHHHHHHHHhCCCc-cCCCChHHEEE-ECCcEEEEeCccccc
Confidence            467899999999999999998 99999999999 577899999999765

>cd07302 CHD cyclase homology domain

Probab=98.04  E-value=3.7e-06  Score=74.22  Aligned_cols=54  Identities=28%  Similarity=0.212  Sum_probs=52.0

Q ss_pred             ceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         341 SVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       341 ~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      +|||+|+||+|||.+....+|.+++.+||.++. +++++..++.+.+.+.||.++
T Consensus         1 ~~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~   55 (177)
T cd07302           1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVM   55 (177)
T ss_pred             CEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEE
Confidence            589999999999999999999999999999999 999999999999999999988

Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=97.88  E-value=2e-05  Score=66.87  Aligned_cols=49  Identities=22%  Similarity=0.388  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHhC---CCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          24 GSISVNTTASVGMIHLHDS---EIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~---~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      ....++.+++.++.++|..   +++ |||++|.|++++..+.+++.|||.+..
T Consensus        87 ~~~~~~~~~~~~l~~lh~~~~~~i~-H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          87 EKEDIAEQLAELLAKLHQLPLLVLC-HGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEE-ecCCCcceEEEECCcEEEEEecccccC
Confidence            3578899999999999985   466 999999999999999999999998764

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins

Probab=97.81  E-value=2.5e-05  Score=72.20  Aligned_cols=36  Identities=44%  Similarity=0.601  Sum_probs=32.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Q psy1840         293 RVPGLVQERTNQLTQEKKKTDALLHRMLPRSVSESL  328 (423)
Q Consensus       293 ~~~~~v~~~~~~l~~e~~~~~~ll~~~lp~~ia~~l  328 (423)
                      +.+..+++.+++|++||+|+|+|||+|||++||++|
T Consensus       184 ~~~~~Le~~~~~l~~ek~ktd~LL~~mlP~~VA~~L  219 (219)
T PF07701_consen  184 EKSAELEESMRELEEEKKKTDELLYSMLPPSVADRL  219 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhhC
Confidence            344588999999999999999999999999999987

The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.

>KOG1243|consensus

Probab=97.72  E-value=0.0001  Score=76.72  Aligned_cols=150  Identities=14%  Similarity=0.143  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG  106 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~  106 (423)
                      --+.||+.+|.|||..+-++|+||.-..|+++..|..||++|-+.....+.....  ....---.|..|+.+...     
T Consensus       108 ~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~--~~~~~~~s~~~P~~~~~s-----  180 (690)
T KOG1243|consen  108 LGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPA--KSLYLIESFDDPEEIDPS-----  180 (690)
T ss_pred             HHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCccc--ccchhhhcccChhhcCcc-----
Confidence            4578999999999976555599999999999999999999998864432222100  111111236667655322     


Q ss_pred             CCccchHHHHHHHHHHHhCCCCCCC----CCCChHHHHH----HHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         107 TQKGDVYSFGLVLYEVIGRQGPWGH----LRMTDEEIIT----SVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       107 s~ksDVyS~Giil~elltg~~Pf~~----~~~~~~~i~~----~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      .-..|.|-|||+++|++.|..+-..    ....++..+.    ++......+         +....++..|....+--|=
T Consensus       181 ~~s~D~~~Lg~li~el~ng~~~~~~~~~~~~~ipk~~~~~~~k~~~~~~~~r---------~n~~~~~~~~~~~~gff~n  251 (690)
T KOG1243|consen  181 EWSIDSWGLGCLIEELFNGSLLTKTDLSNTGKIPKALIELYCKKLGATELKR---------PNKLRFILECRLLGGFFRN  251 (690)
T ss_pred             ccchhhhhHHHHHHHHhCcccCcchhhhccCccchhHHHHHHHHhccccccc---------cchhhHHHHHHhccccccc
Confidence            3467999999999999998322110    0111111111    111111111         1255677778777777777


Q ss_pred             CHHHHHHHHHHHhh
Q psy1840         179 DLRFVHHKLKEMNA  192 (423)
Q Consensus       179 t~~~I~~~L~~i~~  192 (423)
                      .+-++...|..+.-
T Consensus       252 ~fvd~~~fLeel~l  265 (690)
T KOG1243|consen  252 DFVDTLLFLEELRL  265 (690)
T ss_pred             hHHHHHHHHHhccc
Confidence            77777777776653

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.70  E-value=6e-05  Score=66.23  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHhCCC----eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          27 SVNTTASVGMIHLHDSEI----ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~i----i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ....+++..+..||+.++    ++|||++|.||+++ ++.++++|||.+.
T Consensus        87 ~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          87 ENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             HHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            567899999999999885    34999999999999 6689999999865

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0601|consensus

Probab=97.70  E-value=2.2e-05  Score=80.46  Aligned_cols=147  Identities=18%  Similarity=0.241  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-ccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ++.+..|++.++.++|+..++ |+|+||+||++.++ +..+++|||++..+.-...    .....+..|-..|++.... 
T Consensus       368 ~~~~~~q~~~~l~~i~s~~~~-~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~r~~p~~~~~~e~~-  441 (524)
T KOG0601|consen  368 RLRLTAQILTALNVIHSKLFV-HLDVKPSNILISNDGFFSKLGDFGCWTRLAFSSG----VFHHIDRLYPIAEILLEDY-  441 (524)
T ss_pred             hhhhHHHHHhccccccchhhh-cccccccceeeccchhhhhccccccccccceecc----cccccccccccchhhcccc-
Confidence            468889999999999999988 99999999999886 8899999999753211110    1112222341244444332 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                       ....++|+||||.-+.|.+++..--..    ..+ ...+..+..  |...  .....+..+.+.+...++..||.+.++
T Consensus       442 -~~~~~~~~~sl~~~~~e~~~~~~ls~~----~~~-~~~i~~~~~--p~~~--~~~~~~q~~~kv~~~~~~~~~~l~~~l  511 (524)
T KOG0601|consen  442 -PHLSKADIFSLGLSVDEAITGSPLSES----GVQ-SLTIRSGDT--PNLP--GLKLQLQVLLKVMINPDRKRRPSAVEL  511 (524)
T ss_pred             -ccccccccccccccccccccCcccCcc----ccc-ceeeecccc--cCCC--chHHhhhhhhhhhcCCccccchhhhhh
Confidence             237899999999999999887642111    011 112222221  1111  223677888889999999999988776


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ....
T Consensus       512 ~~~~  515 (524)
T KOG0601|consen  512 SLHS  515 (524)
T ss_pred             cccc
Confidence            5443

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.63  E-value=7.7e-05  Score=67.76  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHH-HhCCCeeecCCCCCCEEEcCCccEEEeccCCcccc
Q psy1840          25 SISVNTTASVGMIHL-HDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK   74 (423)
Q Consensus        25 ~l~i~~qi~~gL~yL-H~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~   74 (423)
                      ...+..+++.+|..+ |..|++ ||||++.||+++ ++.+.|+|||.+-..
T Consensus       126 ~~~i~~~i~~~l~~l~H~~glV-HGDLs~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         126 MKNAYYQVLSMMKQLYKECNLV-HADLSEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence            356788999999999 889998 999999999997 467999999976543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.62  E-value=0.0013  Score=67.49  Aligned_cols=48  Identities=13%  Similarity=0.150  Sum_probs=40.9

Q ss_pred             HHHHHHHHH-HHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccc
Q psy1840          26 ISVNTTASV-GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK   74 (423)
Q Consensus        26 l~i~~qi~~-gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~   74 (423)
                      ..++.+++. .+..+|..|++ |+|++|.||+++.++.++++|||++...
T Consensus       259 ~~ia~~~~~~~l~ql~~~g~~-H~D~hPgNilv~~~g~i~liDfG~~~~l  307 (437)
T TIGR01982       259 KALAENLARSFLNQVLRDGFF-HADLHPGNIFVLKDGKIIALDFGIVGRL  307 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCCce-eCCCCcccEEECCCCcEEEEeCCCeeEC
Confidence            456777766 46889999998 9999999999999999999999997543

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.51  E-value=0.00016  Score=64.39  Aligned_cols=46  Identities=28%  Similarity=0.466  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      ..++..+..-+.-||..|++ ||||.++|+++.+.. +.++|||++.+
T Consensus        95 ~~~~r~vG~~vg~lH~~giv-HGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          95 PDLLREVGRLVGKLHKAGIV-HGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             hHHHHHHHHHHHHHHhcCee-cCCCccceEEEeCCc-EEEEECCcccc
Confidence            46788888889999999998 999999999998765 89999999764

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.37  E-value=0.0003  Score=67.18  Aligned_cols=48  Identities=13%  Similarity=0.121  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-------CccEEEeccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-------RWVLQIADFGLHAF   73 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-------~~~vKL~DFGla~~   73 (423)
                      +-.++.+++..+.-||..|++ ||||+++|||++.       ++.+.++||+.+..
T Consensus       140 ~~~ll~~la~~i~~LH~~Gi~-HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        140 KRMLIKRVATMVRDMHAAGIN-HRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHHHHHHHHHHHHHCcCc-cCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            568999999999999999998 9999999999975       57899999998653

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.30  E-value=0.0004  Score=63.70  Aligned_cols=49  Identities=27%  Similarity=0.348  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc---cEEEeccCCccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGLHAF   73 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~---~vKL~DFGla~~   73 (423)
                      .+-.++.+++..+.-||..|++ |+|+++.|||++.+.   .+.++||+.++.
T Consensus       119 ~~~~ll~~l~~~i~~lH~~gi~-H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  119 QRRELLRALARLIAKLHDAGIY-HGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             hHHHHHHHHHHHHHHHHHCcCC-CCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            3578999999999999999998 999999999999877   899999997664

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG3087|consensus

Probab=97.22  E-value=0.00056  Score=60.84  Aligned_cols=48  Identities=33%  Similarity=0.482  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC---ccEEEeccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHAF   73 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~---~~vKL~DFGla~~   73 (423)
                      ...++.+|.+-+.-||..++| ||||..+||++.++   ..+-++|||++..
T Consensus       115 ~~~~~~~iG~~igklH~ndii-HGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen  115 LAELARRIGELIGKLHDNDII-HGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             HHHHHHHHHHHHHHhhhCCee-cccccccceEEecCCCcCceEEEeecchhc
Confidence            368999999999999999998 99999999999543   4568999999653

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.94  E-value=0.0015  Score=58.98  Aligned_cols=47  Identities=30%  Similarity=0.430  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHH-HHhCCCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          25 SISVNTTASVGMIH-LHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        25 ~l~i~~qi~~gL~y-LH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      .-.+..+++..+.. +|..|++ ||||.+.||+++.+ .+.|+|||.+..
T Consensus       108 ~~~~~~~il~~~~~~~~~~giv-HGDLs~~NIlv~~~-~~~iIDf~qav~  155 (188)
T PF01163_consen  108 PKELLEEILEEIIKMLHKAGIV-HGDLSEYNILVDDG-KVYIIDFGQAVD  155 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTEE-ESS-STTSEEEETT-CEEE--GTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCce-ecCCChhhEEeecc-eEEEEecCccee
Confidence            45678888886666 4788998 99999999999887 899999997654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3741|consensus

Probab=96.85  E-value=0.009  Score=60.96  Aligned_cols=133  Identities=14%  Similarity=0.163  Sum_probs=93.8

Q ss_pred             CChHHH-HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccc
Q psy1840          20 NIPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        20 ~~p~~~-l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l   98 (423)
                      ..|+.- ..++.|+..||.++|+.|+- -+-|.+.+|+++.+.+++|+.-|+...+....              .  |-+
T Consensus       389 ~~~e~~lW~y~~QLtaaL~sIHssGLA-ck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~--------------~--~~l  451 (655)
T KOG3741|consen  389 KAPEEVLWSYISQLTAALYSIHSSGLA-CKTLDLKKILVTGKMRIRISGCGIMDVLQEDP--------------T--EPL  451 (655)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCce-eecccHhHeEeeCcceEEEecccceeeecCCC--------------C--cch
Confidence            345443 47899999999999999998 58999999999999999998888765442221              0  112


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      .+      -++-|.=.||.++..|.+|..--.........-+..+..           .++.++.+++......++++ -
T Consensus       452 e~------~Qq~D~~~lG~ll~aLAt~~~ns~~~d~~~~s~~~~I~~-----------~yS~D~rn~v~yl~s~~~~~-k  513 (655)
T KOG3741|consen  452 ES------QQQNDLRDLGLLLLALATGTENSNRTDSTQSSHLTRITT-----------TYSTDLRNVVEYLESLNFRE-K  513 (655)
T ss_pred             hH------HhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHhhh-----------hhhHHHHHHHHHHHhcCccc-c
Confidence            11      467799999999999999965421111211222333332           46789999999999999987 4


Q ss_pred             CHHHHHHHH
Q psy1840         179 DLRFVHHKL  187 (423)
Q Consensus       179 t~~~I~~~L  187 (423)
                      ++.+++..+
T Consensus       514 sI~~llp~~  522 (655)
T KOG3741|consen  514 SIQDLLPMI  522 (655)
T ss_pred             cHHHHHHHH
Confidence            677776655

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=96.62  E-value=0.02  Score=59.94  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             HHHHhCCCeeecCCCCCCEEEcCCc----cEEEeccCCcccc
Q psy1840          37 IHLHDSEIISHGNLRSSNCLIDSRW----VLQIADFGLHAFK   74 (423)
Q Consensus        37 ~yLH~~~ii~HrDLkp~NILld~~~----~vKL~DFGla~~~   74 (423)
                      ..++..|++ |+|++|.||+++.++    .+++.|||+...+
T Consensus       274 ~Qif~~Gff-HaDpHPGNIlv~~~g~~~~~i~llDFGivg~l  314 (537)
T PRK04750        274 TQVFRDGFF-HADMHPGNIFVSYDPPENPRYIALDFGIVGSL  314 (537)
T ss_pred             HHHHhCCee-eCCCChHHeEEecCCCCCCeEEEEecceEEEC
Confidence            445668988 999999999999888    9999999996543

>PRK09902 hypothetical protein; Provisional

Probab=96.26  E-value=0.0075  Score=55.29  Aligned_cols=48  Identities=8%  Similarity=0.074  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc--EEEeccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV--LQIADFGLHAF   73 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~--vKL~DFGla~~   73 (423)
                      +-.++.+++..+.-||..|+. |||+.+.||+++..+.  ++++||.-++.
T Consensus       130 k~~il~~va~~ia~LH~~Gv~-Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        130 RQAMLKAVALAFKKMHSVNRQ-HGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-CCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            578999999999999999998 9999999999986667  99999976543

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=96.16  E-value=0.0089  Score=55.10  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          28 VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        28 i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      +...+.+.+.-||+.|+. |||..|.|++++.++ +++.||+..+
T Consensus       140 ~~~ki~~~ikqlH~~G~~-HGD~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  140 LAEKIVEAIKQLHKHGFY-HGDPHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             HHHHHHHHHHHHHHcCCc-cCCCCcCcEEEECCc-EEEEECcccc
Confidence            556788899999999998 999999999998655 8999998754

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=94.80  E-value=0.057  Score=49.12  Aligned_cols=29  Identities=28%  Similarity=0.540  Sum_probs=24.8

Q ss_pred             eeecCCCCCCEEEcC--CccEEEeccCCccc
Q psy1840          45 ISHGNLRSSNCLIDS--RWVLQIADFGLHAF   73 (423)
Q Consensus        45 i~HrDLkp~NILld~--~~~vKL~DFGla~~   73 (423)
                      ++|||+.|.||+++.  ++.+.|+||+.+..
T Consensus       176 l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         176 LVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             EEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence            459999999999998  66789999998654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=94.26  E-value=0.067  Score=50.77  Aligned_cols=43  Identities=16%  Similarity=0.192  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCC
Q psy1840          27 SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL   70 (423)
Q Consensus        27 ~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGl   70 (423)
                      .++..|+.-+.-+-..|++ |||+.+-||+++.+|.+.++||--
T Consensus       206 ~il~~il~~~~~~~~~GiV-HGDlSefNIlV~~dg~~~vIDwPQ  248 (304)
T COG0478         206 EILDKILEEVRKAYRRGIV-HGDLSEFNILVTEDGDIVVIDWPQ  248 (304)
T ss_pred             HHHHHHHHHHHHHHHcCcc-ccCCchheEEEecCCCEEEEeCcc
Confidence            4566666666666678998 999999999999999999999954

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=93.25  E-value=0.098  Score=47.24  Aligned_cols=53  Identities=11%  Similarity=0.086  Sum_probs=44.7

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhC--CCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          17 SPFNIPIGSISVNTTASVGMIHLHDS--EIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        17 ~~~~~p~~~l~i~~qi~~gL~yLH~~--~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .||..   |.+++.+++..+.+++..  |.+.-.|++++|+.++++|++|++|..-..
T Consensus        56 ~~w~~---R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~  110 (188)
T PF12260_consen   56 SPWEQ---RAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVF  110 (188)
T ss_pred             cCHHH---HHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcc
Confidence            35554   899999999999999873  446579999999999999999999997643

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG1035|consensus

Probab=92.87  E-value=0.24  Score=55.44  Aligned_cols=142  Identities=16%  Similarity=0.197  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCC---CEEEcCCccEEEe--ccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSS---NCLIDSRWVLQIA--DFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~---NILld~~~~vKL~--DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ..+..++..|+.|+|+.... |.-|..+   +--.+..+.+.++  ||+.++........   ........|.+||....
T Consensus       289 r~~~~~~~~GL~~~h~~~l~-~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~---~~~~~~~~~~~~e~~~~  364 (1351)
T KOG1035|consen  289 RILHQKLLEGLAYLHSLSLE-HVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKS---FSDLLAEIRNADEDLKE  364 (1351)
T ss_pred             HHHHHHHhhhHHHHHHhccc-eeEEecccccccccCccceeecchhhhcccccCCCcccc---hhhcCcccccccccccc
Confidence            45788899999999998554 5555444   4445667777777  88877655433222   22233445888888776


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ... ......|+|.+|.....+..|..+-... .    ...          ......+..........|+..++++|++.
T Consensus       365 ~~~-~~~r~~dL~~lgll~~~~~~~~~i~~~~-~----~~~----------~~l~~~~~~~~~d~~~~~~~~~~~~Rl~~  428 (1351)
T KOG1035|consen  365 NTA-KKSRLTDLWCLGLLLLQLSQGEDISEKS-A----VPV----------SLLDVLSTSELLDALPKCLDEDSEERLSA  428 (1351)
T ss_pred             ccc-hhhhhhHHHHHHHHHhhhhhcCcccccc-c----chh----------hhhccccchhhhhhhhhhcchhhhhccch
Confidence            553 3355579999999999888776442210 0    000          01111222267788899999999999999


Q ss_pred             HHHHHHH
Q psy1840         181 RFVHHKL  187 (423)
Q Consensus       181 ~~I~~~L  187 (423)
                      .+++...
T Consensus       429 ~~ll~~~  435 (1351)
T KOG1035|consen  429 LELLTHP  435 (1351)
T ss_pred             hhhhhch
Confidence            9887653

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=91.11  E-value=0.39  Score=46.64  Aligned_cols=30  Identities=30%  Similarity=0.432  Sum_probs=25.8

Q ss_pred             CCCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          42 SEIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        42 ~~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .+++ |||+.+.|++++.++.+.|.||+.+.
T Consensus       187 ~~l~-HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       187 RGVI-HADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CccC-CCCCCcCcEEEECCceEEEeeccccc
Confidence            4666 99999999999998878899998753

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=90.69  E-value=0.55  Score=44.17  Aligned_cols=47  Identities=19%  Similarity=0.173  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          25 SISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      .-.+..++++++.-|-. .+++ ||||..=|||+. ++.+.|+|+|-+..
T Consensus       168 ~~~~~~~~v~~~~~l~~~a~LV-HgDLSEyNiL~~-~~~p~iID~~QaV~  215 (268)
T COG1718         168 AEGLYEDVVEYMRRLYKEAGLV-HGDLSEYNILVH-DGEPYIIDVSQAVT  215 (268)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcc-cccchhhheEEE-CCeEEEEECccccc
Confidence            45677888889988877 6887 999999999999 78999999997643

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=89.81  E-value=0.27  Score=45.75  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=23.9

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ++|||+.+.|++++.....-|.||+.+.
T Consensus       166 l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         166 WFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             EEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            3499999999999987667899999764

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PRK05231 homoserine kinase; Provisional

Probab=89.34  E-value=0.31  Score=47.46  Aligned_cols=30  Identities=23%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             CCCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          42 SEIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        42 ~~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .+++ |||+.+.||+++.+...-|.||+.+.
T Consensus       187 ~~li-HgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        187 RGVI-HADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             cccC-CCCCCCCcEEEECCceEEEEeccccc
Confidence            3666 99999999999977667899998754

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=88.86  E-value=0.69  Score=44.46  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             CCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          43 EIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        43 ~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      +++ |||+.|.|+++++++.+.|.||+.+.
T Consensus       176 ~l~-HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         176 GVI-HADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             cCC-ccCcCcccEEEeCCceEEEeehhhhc
Confidence            465 99999999999998878999998753

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PRK10271 thiK thiamine kinase; Provisional

Probab=88.50  E-value=0.4  Score=43.17  Aligned_cols=27  Identities=15%  Similarity=0.223  Sum_probs=23.6

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .+|+|+.|.|+++++++ ++++||+.+.
T Consensus        79 p~H~D~~~~N~~~~~~~-~~lIDwe~a~  105 (188)
T PRK10271         79 PLHMDVHAGNLVHSASG-LRLIDWEYAG  105 (188)
T ss_pred             eecCCCCCccEEEECCC-EEEEeCCccc
Confidence            35999999999998877 8899999864

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=88.45  E-value=0.65  Score=43.12  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             CCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          43 EIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        43 ~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .+++|||+.|.|++++..+ +.++||+.+.
T Consensus       153 ~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       153 STCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            3556999999999999888 9999999764

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=88.40  E-value=0.76  Score=44.43  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             CCeeecCCCCCCEEEcCCccEEEeccCCc
Q psy1840          43 EIISHGNLRSSNCLIDSRWVLQIADFGLH   71 (423)
Q Consensus        43 ~ii~HrDLkp~NILld~~~~vKL~DFGla   71 (423)
                      +++ |||+.+.||+++. +.+.|.||+.+
T Consensus       188 ~li-HgD~~~~Nil~~~-~~i~lIDfd~~  214 (313)
T TIGR02906       188 GFC-HQDYAYHNILLKD-NEVYVIDFDYC  214 (313)
T ss_pred             ceE-cCCCCcccEEEeC-CcEEEEECccc
Confidence            455 9999999999988 56889999864

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=88.33  E-value=0.89  Score=43.87  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=24.7

Q ss_pred             CeeecCCCCCCEEEcCC----ccEEEeccCCcc
Q psy1840          44 IISHGNLRSSNCLIDSR----WVLQIADFGLHA   72 (423)
Q Consensus        44 ii~HrDLkp~NILld~~----~~vKL~DFGla~   72 (423)
                      .++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       180 ~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         180 VFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             eEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            34599999999999985    889999998754

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=87.80  E-value=0.61  Score=43.09  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=24.2

Q ss_pred             eeecCCCCCCEEEcC-CccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDS-RWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~-~~~vKL~DFGla~   72 (423)
                      .+|+|+.+.||++++ ++.+.++||..+.
T Consensus       172 l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         172 FCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             EEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            459999999999998 5789999998754

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=87.18  E-value=0.53  Score=43.88  Aligned_cols=28  Identities=21%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .+|||+.|.||+++.+..+.|+||+.+.
T Consensus       165 l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         165 VTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             EECCCCCCccEEEeCCcEEEEEEccccc
Confidence            4599999999999998888999998754

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=87.04  E-value=0.38  Score=43.80  Aligned_cols=29  Identities=34%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             CeeecCCCCCCEEEc-CCccEEEeccCCcc
Q psy1840          44 IISHGNLRSSNCLID-SRWVLQIADFGLHA   72 (423)
Q Consensus        44 ii~HrDLkp~NILld-~~~~vKL~DFGla~   72 (423)
                      .++|||+.|.||+++ .++.+-|.||+.+.
T Consensus       167 ~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  167 VLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             EEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             EEEEeccccccceeeeccceeEEEecccce
Confidence            345999999999999 66767899998754

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG0576|consensus

Probab=86.98  E-value=0.25  Score=52.03  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCCC
Q psy1840          28 VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGT  107 (423)
Q Consensus        28 i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~s  107 (423)
                      +...-.++++++|+..-+ |+|    ||+..+ +..|..+|+....+....   ......+++.|+|||...+..+   .
T Consensus       341 ~~r~et~~l~~l~~~~~~-~~d----~~l~s~-~~~~~~~~~v~~~L~~~~---~~~t~~~~~~~~~pev~~~~~~---~  408 (829)
T KOG0576|consen  341 PLRKETRPLAELHSSYKV-HRD----NILGSE-EEVKLLDFAVPPQLTRTM---KPRTAIGTPEPLAPEVIQENTI---D  408 (829)
T ss_pred             hhhhhccccccccccccc-Ccc----cccccc-cccccccccCCcccCccc---ccccCCCCCCCCCchhhccccc---c
Confidence            344456788999987545 998    666654 678999999876554332   2356678899999998887765   7


Q ss_pred             CccchHHHHHHHHHHHhCCCCC
Q psy1840         108 QKGDVYSFGLVLYEVIGRQGPW  129 (423)
Q Consensus       108 ~ksDVyS~Giil~elltg~~Pf  129 (423)
                      .+.|+||.|.--.++.-|..|-
T Consensus       409 ~~p~~~~~~~~~~~~ap~~pPr  430 (829)
T KOG0576|consen  409 GCPDSGSLAVSAIQMAPGLPPR  430 (829)
T ss_pred             cCCCccCCCcchhhcCCCCCCC
Confidence            8899999998666666665553

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=85.70  E-value=1.9  Score=42.95  Aligned_cols=52  Identities=23%  Similarity=0.159  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCccccc
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKA   75 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~   75 (423)
                      .+.++|+.+.+.-+.-+..+--.-|||+...||||+ +|.+.|+||-+++...
T Consensus       321 ~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId-~GnvtLIDfklsRl~~  372 (488)
T COG5072         321 EEELSFFWSCISILDILEKKFPFEHRNLTLDNILID-EGNVTLIDFKLSRLSY  372 (488)
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCcccccccccceeee-cCceEEEEeeeeeccc
Confidence            346788888777676666653334999999999999 9999999999988543

>KOG1826|consensus

Probab=84.91  E-value=0.27  Score=56.73  Aligned_cols=80  Identities=14%  Similarity=0.099  Sum_probs=61.2

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHh
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG  124 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~ellt  124 (423)
                      .+|++||+-|.+|..+..+|++++|+.+...+....  .....+++.|+.|++...-.+   +.++|+|..|+-+|+...
T Consensus      1361 ~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf--~Gl~l~sp~~v~qli~N~ik~---t~rsdilr~s~~ly~rs~ 1435 (2724)
T KOG1826|consen 1361 NVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSF--FGLELCSPIYVLQLIKNEIKF---TKRSDILRRSLSLYLRSD 1435 (2724)
T ss_pred             chhhhhhhhccceecCCcccccccccccccCchHhh--hhhhhCCHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhc
Confidence            459999999999999999999999998843322211  134456677888887765443   777999999999999887


Q ss_pred             CCCCC
Q psy1840         125 RQGPW  129 (423)
Q Consensus       125 g~~Pf  129 (423)
                      |..+|
T Consensus      1436 ~n~~f 1440 (2724)
T KOG1826|consen 1436 GNAYF 1440 (2724)
T ss_pred             ccHHH
Confidence            77666

>TIGR02721 ycfN_thiK thiamine kinase

Probab=84.73  E-value=0.72  Score=43.41  Aligned_cols=28  Identities=14%  Similarity=0.254  Sum_probs=23.8

Q ss_pred             CeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          44 IISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        44 ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ..+|+|+.|.|++++.++ +.+.||..+.
T Consensus       147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             eeecCCCCcCcEEEeCCC-CEEEeccccC
Confidence            345999999999999877 7899998764

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=83.41  E-value=0.7  Score=42.13  Aligned_cols=30  Identities=23%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             CeeecCCCCCCEEE-cCCccEEEeccCCccc
Q psy1840          44 IISHGNLRSSNCLI-DSRWVLQIADFGLHAF   73 (423)
Q Consensus        44 ii~HrDLkp~NILl-d~~~~vKL~DFGla~~   73 (423)
                      +.+|+||.+.||++ +.++.++++||..+..
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            56699999999999 8889999999987653

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=83.36  E-value=1  Score=40.70  Aligned_cols=31  Identities=23%  Similarity=0.496  Sum_probs=24.5

Q ss_pred             CCeeecCCCCCCEEEcCCc-----cEEEeccCCccc
Q psy1840          43 EIISHGNLRSSNCLIDSRW-----VLQIADFGLHAF   73 (423)
Q Consensus        43 ~ii~HrDLkp~NILld~~~-----~vKL~DFGla~~   73 (423)
                      ..++|||+.+.|+++..++     .+.+.||..+..
T Consensus       120 ~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~  155 (196)
T smart00587      120 NVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHY  155 (196)
T ss_pred             eEEeeCCCCccceeeccCCCCCccceEEEecccCCc
Confidence            3556999999999997543     689999987643

subfamily of choline kinases

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=82.35  E-value=1.4  Score=46.12  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=35.7

Q ss_pred             HHHHHHHHH-HHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccc
Q psy1840          27 SVNTTASVG-MIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK   74 (423)
Q Consensus        27 ~i~~qi~~g-L~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~   74 (423)
                      .++..++.. +..+-..|++ |+|..|.||+++.+|.+-+.|||+....
T Consensus       268 ~ia~~~~~~f~~q~~~dgff-HaDpHpGNi~v~~~g~i~~lDfGi~g~l  315 (517)
T COG0661         268 ELAELLVRAFLRQLLRDGFF-HADPHPGNILVRSDGRIVLLDFGIVGRL  315 (517)
T ss_pred             HHHHHHHHHHHHHHHhcCcc-ccCCCccceEEecCCcEEEEcCcceecC
Confidence            344444443 3444457888 9999999999999999999999996554

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=82.31  E-value=1.9  Score=41.27  Aligned_cols=45  Identities=13%  Similarity=0.163  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          28 VNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        28 i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .+..+-..+.-.+.. -.++|+|+.|.|++.++.+.++|+||-.|.
T Consensus       137 ~~~~l~~~l~~~~~~~~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg  182 (269)
T COG0510         137 KLKELRRALEEVPKDDLVPCHNDLNPGNLLLTDKGGLFLIDWEYAG  182 (269)
T ss_pred             HHHHHHHHhhhcCCCceeeecCCCCccceEEcCCCcEEEEecccCC
Confidence            333344444444444 356699999999999999999999997654

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=82.31  E-value=1.5  Score=42.14  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=24.0

Q ss_pred             CeeecCCCCCCEEEcCCcc-EEEeccCCccc
Q psy1840          44 IISHGNLRSSNCLIDSRWV-LQIADFGLHAF   73 (423)
Q Consensus        44 ii~HrDLkp~NILld~~~~-vKL~DFGla~~   73 (423)
                      .++|||+++.|++++.++. .-|.||+.+..
T Consensus       186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         186 VLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            3459999999999997554 57999997653

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=82.29  E-value=2  Score=41.69  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=25.0

Q ss_pred             CeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          44 IISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        44 ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .++|||+.++|++++.++.+.++||..+.
T Consensus       197 ~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~  225 (309)
T TIGR02904       197 VLVHGKLSLSHFLYDETRGGYFINFEKAS  225 (309)
T ss_pred             eeeCCCCcHHhEEEcCCCCEEEEEhhhcc
Confidence            34499999999999999999999997654

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=82.23  E-value=1.3  Score=41.02  Aligned_cols=74  Identities=18%  Similarity=0.147  Sum_probs=49.5

Q ss_pred             HHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCCCCccc
Q psy1840          33 SVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGD  111 (423)
Q Consensus        33 ~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksD  111 (423)
                      ++.|.-.|+ ++-.+|||-.|+||+-|+.|.+||.|-+.-  ...            +..|.--|+.      ..|+++.
T Consensus       151 i~~L~~fH~~~~~~lHGD~np~NiM~D~~G~lKlVDP~~L--l~~------------~V~~vN~~Y~------~lT~~aE  210 (308)
T PF07387_consen  151 IKDLMDFHSENQHCLHGDCNPDNIMCDKFGYLKLVDPVCL--LEN------------QVNMVNIEYE------SLTQEAE  210 (308)
T ss_pred             HHHHHHhhccCCCeecCCCChhheeecCCCCEEecChhhh--hhh------------eeeEEeeecc------ccChHHH
Confidence            345666683 444459999999999999999999998741  110            1113331211      2378888


Q ss_pred             hHHHHHHHHHHHhCC
Q psy1840         112 VYSFGLVLYEVIGRQ  126 (423)
Q Consensus       112 VyS~Giil~elltg~  126 (423)
                      +=+|=.-+.++...+
T Consensus       211 ~~~fv~s~l~~v~~~  225 (308)
T PF07387_consen  211 VKVFVKSCLKLVEKQ  225 (308)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888888887654

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	423
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		8e-15
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		9e-15
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		9e-15
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		5e-14
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		2e-13
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-13
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-13
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		4e-13
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		4e-13
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		4e-13
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		4e-13
4h58_A	275	Braf In Complex With Compound 3 Length = 275		4e-13
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		4e-13
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		4e-13
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		4e-13
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		8e-13
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		8e-13
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		9e-13
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-12
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		3e-12
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		8e-12
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		9e-12
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		9e-12
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		9e-12
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		9e-12
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		1e-11
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		1e-11
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		1e-11
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		1e-11
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-11
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-11
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-11
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-11
2pl0_A	289	Lck Bound To Imatinib Length = 289		2e-11
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		3e-11
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		5e-11
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		9e-11
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-10
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		1e-10
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		1e-10
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-10
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-10
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		2e-10
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-10
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-10
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		2e-10
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		2e-10
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-10
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-10
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-10
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-10
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-10
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-10
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-10
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-10
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-10
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-10
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		2e-10
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		3e-10
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		3e-10
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		3e-10
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		3e-10
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		3e-10
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		3e-10
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		3e-10
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		3e-10
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		3e-10
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		3e-10
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		4e-10
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		4e-10
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		5e-10
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		7e-10
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		7e-10
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		7e-10
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		1e-09
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		1e-09
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		1e-09
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		1e-09
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-09
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-09
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		1e-09
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-09
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-09
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		2e-09
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-09
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-09
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		2e-09
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		2e-09
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		2e-09
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		3e-09
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		3e-09
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		3e-09
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		4e-09
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		6e-09
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		7e-09
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		7e-09
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		7e-09
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		8e-09
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		8e-09
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		8e-09
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		8e-09
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		9e-09
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		9e-09
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		9e-09
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		1e-08
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		1e-08
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		1e-08
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		1e-08
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		1e-08
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		1e-08
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-08
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		1e-08
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-08
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-08
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		1e-08
1fvr_A	327	Tie2 Kinase Domain Length = 327		1e-08
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		2e-08
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		2e-08
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		2e-08
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		2e-08
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-08
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		2e-08
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		3e-08
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-08
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-08
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-08
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		3e-08
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		3e-08
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		3e-08
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		4e-08
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		4e-08
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		4e-08
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		4e-08
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		4e-08
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		4e-08
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		5e-08
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-08
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-08
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-08
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		5e-08
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		5e-08
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		5e-08
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		5e-08
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		5e-08
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		5e-08
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		5e-08
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		5e-08
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-08
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		5e-08
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		5e-08
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		5e-08
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		6e-08
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		6e-08
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		6e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-08
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		6e-08
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		6e-08
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		7e-08
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		7e-08
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		9e-08
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		1e-07
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		1e-07
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		1e-07
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-07
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-07
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		1e-07
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		1e-07
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-07
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-07
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-07
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		1e-07
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-07
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		2e-07
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-07
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-07
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-07
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		2e-07
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-07
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-07
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-07
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-07
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-07
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-07
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-07
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		2e-07
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		2e-07
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-07
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		3e-07
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		4e-07
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		5e-07
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		6e-07
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		6e-07
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		7e-07
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-06
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-06
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		1e-06
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-06
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		1e-06
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-06
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-06
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-06
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-06
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		2e-06
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-06
3b2t_A	311	Structure Of Phosphotransferase Length = 311		2e-06
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-06
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		2e-06
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		2e-06
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-06
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-06
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		2e-06
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		2e-06
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-06
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-06
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		2e-06
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		2e-06
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		2e-06
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		2e-06
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		2e-06
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		2e-06
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-06
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		2e-06
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		2e-06
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-06
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		2e-06
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-06
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-06
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		2e-06
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		2e-06
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-06
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		2e-06
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-06
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		2e-06
4fl3_A	635	Structural And Biophysical Characterization Of The		2e-06
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		2e-06
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-06
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-06
4fl2_A	636	Structural And Biophysical Characterization Of The		2e-06
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		3e-06
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		3e-06
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		3e-06
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		3e-06
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		3e-06
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-06
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		3e-06
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		3e-06
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		3e-06
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		3e-06
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		3e-06
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		3e-06
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		3e-06
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		3e-06
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		4e-06
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		4e-06
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		4e-06
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		4e-06
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		4e-06
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		4e-06
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		4e-06
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		4e-06
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		4e-06
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		4e-06
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		4e-06
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		4e-06
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		5e-06
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		5e-06
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		5e-06
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		5e-06
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		6e-06
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		7e-06
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		7e-06
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		7e-06
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		7e-06
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		7e-06
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		7e-06
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		8e-06
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		8e-06
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		8e-06
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		8e-06
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		8e-06
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		8e-06
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		8e-06
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		8e-06
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		8e-06
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		8e-06
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		8e-06
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		8e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		8e-06
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		8e-06
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		9e-06
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		9e-06
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		9e-06
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		9e-06
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		9e-06
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		1e-05
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		1e-05
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		1e-05
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		1e-05
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		1e-05
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		1e-05
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		1e-05
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		1e-05
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		1e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		1e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		1e-05
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		1e-05
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		1e-05
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		1e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		1e-05
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		2e-05
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		2e-05
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		2e-05
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		2e-05
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		2e-05
3my0_A	305	Crystal Structure Of The Acvrl1 (Alk1) Kinase Domai		3e-05
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		4e-05
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		5e-05
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		6e-05
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		6e-05
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		7e-05
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		7e-05
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		8e-05
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		8e-05
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		8e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-04
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		1e-04
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		1e-04
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		1e-04
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		2e-04
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		2e-04
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-04
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		2e-04
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		2e-04
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		2e-04
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		2e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-04
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		3e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		4e-04
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		4e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		4e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		4e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		4e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		4e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		4e-04
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		4e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		5e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		5e-04
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		5e-04
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		5e-04
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-04
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		5e-04
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-04
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		5e-04
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		5e-04
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		6e-04
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		6e-04
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		6e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		6e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		6e-04
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		6e-04
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		6e-04
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		6e-04
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		6e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		6e-04

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 22/187 (11%)
Query: 9   EAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADF 68
           E + P PL    +    ++V +  + GM++L     + H +L + NCL+    V++I DF
Sbjct: 148 EDVAPGPLGLGQL----LAVASQVAAGMVYLAGLHFV-HRDLATRNCLVGQGLVVKIGDF 202
Query: 69  GLH--AFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--G 124
           G+    +       G    L  R +     L R     + T + DV+SFG+VL+E+   G
Sbjct: 203 GMSRDIYSTDYYRVGGRTMLPIRWMPPESILYR-----KFTTESDVWSFGVVLWEIFTYG 257
Query: 125 RQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV 183
           +Q PW   ++++ E I  +TQG  L RP      C P + A MR CW+ +P+ R  ++ V
Sbjct: 258 KQ-PW--YQLSNTEAIDCITQGRELERPRA----CPPEVYAIMRGCWQREPQQRHSIKDV 310
Query: 184 HHKLKEM 190
           H +L+ +
Sbjct: 311 HARLQAL 317

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 22/187 (11%)
Query: 9   EAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADF 68
           E + P PL    +    ++V +  + GM++L     + H +L + NCL+    V++I DF
Sbjct: 125 EDVAPGPLGLGQL----LAVASQVAAGMVYLAGLHFV-HRDLATRNCLVGQGLVVKIGDF 179
Query: 69  GLH--AFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--G 124
           G+    +       G    L  R +     L R     + T + DV+SFG+VL+E+   G
Sbjct: 180 GMSRDIYSTDYYRVGGRTMLPIRWMPPESILYR-----KFTTESDVWSFGVVLWEIFTYG 234
Query: 125 RQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV 183
           +Q PW   ++++ E I  +TQG  L RP      C P + A MR CW+ +P+ R  ++ V
Sbjct: 235 KQ-PW--YQLSNTEAIDCITQGRELERPRA----CPPEVYAIMRGCWQREPQQRHSIKDV 287
Query: 184 HHKLKEM 190
           H +L+ +
Sbjct: 288 HARLQAL 294

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 22/187 (11%)
Query: 9   EAITPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADF 68
           E + P PL    +    ++V +  + GM++L     + H +L + NCL+    V++I DF
Sbjct: 119 EDVAPGPLGLGQL----LAVASQVAAGMVYLAGLHFV-HRDLATRNCLVGQGLVVKIGDF 173
Query: 69  GLH--AFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--G 124
           G+    +       G    L  R +     L R     + T + DV+SFG+VL+E+   G
Sbjct: 174 GMSRDIYSTDYYRVGGRTMLPIRWMPPESILYR-----KFTTESDVWSFGVVLWEIFTYG 228
Query: 125 RQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV 183
           +Q PW   ++++ E I  +TQG  L RP      C P + A MR CW+ +P+ R  ++ V
Sbjct: 229 KQ-PW--YQLSNTEAIDCITQGRELERPRA----CPPEVYAIMRGCWQREPQQRHSIKDV 281
Query: 184 HHKLKEM 190
           H +L+ +
Sbjct: 282 HARLQAL 288

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 26  ISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQER 84
           +S+    + GM +LH+ +  I H NL+S N L+D ++ +++ DFGL   KA    + +  
Sbjct: 140 LSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSA 199
Query: 85  KLRRRKLYKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSV 143
                  + APE+LR +P      +K DVYSFG++L+E+   Q PWG+L     +++ +V
Sbjct: 200 AGTPE--WMAPEVLRDEP----SNEKSDVYSFGVILWELATLQQPWGNL--NPAQVVAAV 251
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             G   +      +  P + A +  CW  +P  RP    +   L+ +
Sbjct: 252 --GFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPL 296

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 5/167 (2%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q  +
Sbjct: 111 IDIARQTARGMDYLHAKSII-HRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQ 169
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
           L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  V +
Sbjct: 170 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIEMVGR 228
Query: 146 GSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           GS L PD S +  +C   +   M  C ++  + RP    +  +++E+
Sbjct: 229 GS-LSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 274

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 26  ISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQER 84
           +S+    + GM +LH+ +  I H +L+S N L+D ++ +++ DFGL   KA        +
Sbjct: 140 LSMAYDVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASX--FLXSK 197
Query: 85  KLRRRKLYKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSV 143
                  + APE+LR +P      +K DVYSFG++L+E+   Q PWG+L     +++ +V
Sbjct: 198 XAAGTPEWMAPEVLRDEP----SNEKSDVYSFGVILWELATLQQPWGNL--NPAQVVAAV 251
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             G   +      +  P + A +  CW  +P  RP    +   L+ +
Sbjct: 252 --GFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPL 296

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 5/167 (2%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q  +
Sbjct: 123 IDIARQTARGMDYLHAKSII-HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQ 181
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
           L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  V +
Sbjct: 182 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIEMVGR 240
Query: 146 GSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           GS L PD S +  +C   +   M  C ++  + RP    +  +++E+
Sbjct: 241 GS-LSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 104 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 162
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 163 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 221
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 222 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 109 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 167
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 168 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 226
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 227 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 263

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 132 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 190
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 191 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 249
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 250 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 286

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 131 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 189
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 190 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 248
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 249 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 285

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 104 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 162
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 163 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 221
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 222 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 5/167 (2%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q  +
Sbjct: 123 IDIARQTARGMDYLHAKSII-HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQ 181
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
           L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  V +
Sbjct: 182 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIEMVGR 240
Query: 146 GSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           GS L PD S +  +C   +   M  C ++  + RP    +  +++E+
Sbjct: 241 GS-LSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 106 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 164
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 165 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 223
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 224 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 260

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 109 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 167
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 168 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 226
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 227 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 263

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 124 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQ 182
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 183 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 241
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 242 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 278

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 104 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQ 162
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 163 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 221
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 222 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 258

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  I +    + GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q
Sbjct: 132 IKLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQ 190
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
             +L    L+ APE++R       + + DVY+FG+VLYE++  Q P+ ++   D +II  
Sbjct: 191 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFM 249
Query: 143 VTQGSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRP 178
           V +G  L PD S +  +C  ++   M  C ++  + RP
Sbjct: 250 VGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERP 286

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 12/175 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I +    + GM +LH   II H +++S+N  +     ++I DFGL   K+    + Q  +
Sbjct: 135 IDIARQTAQGMDYLHAKNII-HRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQ 193
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
                L+ APE++R       + + DVYS+G+VLYE++  + P+ H+   D +II  V +
Sbjct: 194 PTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD-QIIFMVGR 252
Query: 146 GSGLRPDTSSL--DCAPS----IIACMRTCWEED---PELRPDLRFVHHKLKEMN 191
           G    PD S L  +C  +    +  C++   EE    P++   +  + H L ++N
Sbjct: 253 GYA-SPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKIN 306

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H NLR++N L+      +IADFGL       + T +E      K + A
Sbjct: 117 GMAFIEERNYI-HRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIK-WTA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 175 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 229
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 230 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 263

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 123 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 180
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 181 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 235
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 236 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 269

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 121 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 178
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 179 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 233
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 234 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 122 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 179
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 180 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 234
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 235 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 268

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           IS     + GM +L + + + H +L + NC++D  + +++ADFGL A      E    ++
Sbjct: 127 ISFGLQVARGMEYLAEQKFV-HRDLAARNCMLDESFTVKVADFGL-ARDILDREYYSVQQ 184
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-WGHLRMTDEEIITSVT 144
            R  +L      L      R T K DV+SFG++L+E++ R  P + H+   D  +   + 
Sbjct: 185 HRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFD--LTHFLA 242
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIF 199
           QG  L +P+     C  S+   M+ CWE DP +RP  R +  +++++ + L  + +
Sbjct: 243 QGRRLPQPEY----CPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGDHY 294

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 130 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 187
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 188 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 242
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 243 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 276

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 121 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 178
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 179 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 233
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 234 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 129 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 186
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 187 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 241
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 242 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 275

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 121 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIK-WTA 178
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 179 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 233
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 234 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 127 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 184
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 185 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 239
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 240 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 273

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 126 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIK-WTA 183
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 184 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 238
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 239 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 272

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 127 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIK-WTA 184
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 185 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 239
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 240 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 273

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 116 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIK-WTA 173
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 174 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 228
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 229 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 262

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 121 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIK-WTA 178
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 179 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 233
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 234 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K + A
Sbjct: 131 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIK-WTA 188
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++   G   +  MT+ E+I ++ +G  + RPD 
Sbjct: 189 PEAINYGTF---TIKSDVWSFGILLTEIV-THGRIPYPGMTNPEVIQNLERGYRMVRPD- 243
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 244 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 277

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH--AFKAGQDETGQE 83
           + +    + GM++L     + H +L + NCL+    +++I DFG+    +       G  
Sbjct: 131 LHIAQQIAAGMVYLASQHFV-HRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGH 189
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIIT 141
             L  R +     + R     + T + DV+S G+VL+E+   G+Q PW   ++++ E+I 
Sbjct: 190 TMLPIRWMPPESIMYR-----KFTTESDVWSLGVVLWEIFTYGKQ-PW--YQLSNNEVIE 241
Query: 142 SVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +TQG  L RP T    C   +   M  CW+ +P +R +++ +H  L+ +
Sbjct: 242 CITQGRVLQRPRT----CPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+ 
Sbjct: 134 SAGMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIP 190
Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE +      + T   DV+S+G+V++EV+   G   +  MT++++I +V +G  L
Sbjct: 191 IRWTAPEAI---AFRKFTSASDVWSYGIVMWEVVS-YGERPYWEMTNQDVIKAVEEGYRL 246
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               S +DC  ++   M  CW+++   RP    + + L ++
Sbjct: 247 ---PSPMDCPAALYQLMLDCWQKERNSRPKFDEIVNMLDKL 284

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     I H +LRS+N L+ +  + +IADFGL       + T ++  
Sbjct: 108 VDMAAQVAAGMAYIERMNYI-HRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGA 166
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E++ + G   +  M + E++  V +
Sbjct: 167 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELVTK-GRVPYPGMNNREVLEQVER 221
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       DC  S+   M  CW++DPE RP   ++   L++
Sbjct: 222 GYRM---PCPQDCPISLHELMIHCWKKDPEERPTFEYLQSFLED 262

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM ++     I H +LR++N L+    + +IADFGL       + T +E  
Sbjct: 113 IDFSAQIAEGMAYIERKNYI-HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGA 171
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE +   +    T K DV+SFG++LYE++   G   +   T+ +++T+++Q
Sbjct: 172 KFPIK-WTAPEAI---NFGCFTIKSDVWSFGILLYEIV-TYGKIPYPGRTNADVMTALSQ 226
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           G  + P     +C   +   M+ CW+E  E RP   ++   L + 
Sbjct: 227 GYRM-PRVE--NCPDELYDIMKMCWKEKAEERPTFDYLQSVLDDF 268

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  +     I H +LR++N L+ +  V +IADFGL       + T +E  
Sbjct: 114 IDFSAQIAEGMAFIEQRNYI-HRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE +   +    T K DV+SFG++L E++   G   +  M++ E+I ++ +
Sbjct: 173 KFPIK-WTAPEAI---NFGSFTIKSDVWSFGILLMEIV-TYGRIPYPGMSNPEVIRALER 227
Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           G  + RP+    +C   +   M  CW+  PE RP   ++   L + 
Sbjct: 228 GYRMPRPE----NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 269

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 89/171 (52%), Gaps = 19/171 (11%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L+ ++ + H +L + NC++   + ++I DFG+        ET   RK  +  L   
Sbjct: 135 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGM---TRDIXETDXXRKGGKGLLPVR 190
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL- 149
           + +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L 
Sbjct: 191 WMSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLD 245
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           +PD    +C   ++  MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 246 KPD----NCPDMLLELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 292

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  L   + I H +L + NCL+D    ++++DFG+  +    D+       +    + A
Sbjct: 116 GMAFLESHQFI-HRDLAARNCLVDRDLCVKVSDFGMTRY-VLDDQYVSSVGTKFPVKWSA 173
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE+    H  + + K DV++FG++++EV    G   +   T+ E++  V+QG  L RP  
Sbjct: 174 PEVF---HYFKYSSKSDVWAFGILMWEVFSL-GKMPYDLYTNSEVVLKVSQGHRLYRPHL 229
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +S     +I   M +CW E PE RP  +
Sbjct: 230 AS----DTIYQIMYSCWHELPEKRPTFQ 253

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 130 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 186
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 187 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 242
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +DC  ++   M  CW++D   RP    +   L ++
Sbjct: 243 ---PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 278

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 130 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 186
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 187 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 242
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +DC  ++   M  CW++D   RP    +   L ++
Sbjct: 243 ---PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 278

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGFV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 147 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 203
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 204 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 259
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +DC  ++   M  CW++D   RP    +   L ++
Sbjct: 260 ---PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 295

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L+ ++ + H +L + NC++   + ++I DFG+        ET   RK  +  L   
Sbjct: 144 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGM---TRDIXETDXXRKGGKGLLPVR 199
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL- 149
           + +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L 
Sbjct: 200 WMSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLD 254
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           +PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 255 KPD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 301

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 23/167 (13%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---------GQE 83
           + GM +L D   + H +L + N L++S  V +++DFGL  F   +D+T         G +
Sbjct: 145 AAGMKYLADMNYV-HRDLAARNILVNSNLVCKVSDFGLSRFL--EDDTSDPTYTSALGGK 201
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSV 143
             +R    + APE ++       T   DV+S+G+V++EV+   G   +  MT++++I ++
Sbjct: 202 IPIR----WTAPEAIQYRKF---TSASDVWSYGIVMWEVMS-YGERPYWDMTNQDVINAI 253
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            Q   L P    +DC  ++   M  CW++D   RP    + + L +M
Sbjct: 254 EQDYRLPP---PMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKM 297

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 157 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 213
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 214 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 269
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 270 ---PMDCPAALYQLMLDCWQKDRNNRP 293

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 12/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM +L + + + H +L + NCL+    V++IADFGL       D    +  
Sbjct: 177 LCIARQVAAGMAYLSERKFV-HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGN 235
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSV 143
                 +  PE +      R T + DV+++G+VL+E+   G Q  +G   M  EE+I  V
Sbjct: 236 DAIPIRWMPPESI---FYNRYTTESDVWAYGVVLWEIFSYGLQPYYG---MAHEEVIYYV 289
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             G+ L       +C   +   MR CW + P  RP    +H  L+ M
Sbjct: 290 RDGNIL---ACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 333

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGAV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  +     I H +LR++N L+ +  V +IADFGL       + T +E  
Sbjct: 287 IDFSAQIAEGMAFIEQRNYI-HRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGA 345
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE +   +    T K DV+SFG++L E++   G   +  M++ E+I ++ +
Sbjct: 346 KFPIK-WTAPEAI---NFGSFTIKSDVWSFGILLMEIV-TYGRIPYPGMSNPEVIRALER 400
Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           G  + RP+    +C   +   M  CW+  PE RP   ++   L + 
Sbjct: 401 GYRMPRPE----NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 442

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLS--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLA--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 141 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 197
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 198 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 252
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 253 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 298

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 143 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 199
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 200 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 254
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 255 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 300

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 172 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 228
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 229 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 283
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 284 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 329

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLG--RVLEDDPEAAYTTRGGKIPIR 215
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + +PE +        T   DV+S+G+VL+EV+   G   +  M+++++I +V +G  L P
Sbjct: 216 WTSPEAIAYRKF---TSASDVWSYGIVLWEVMS-YGERPYWEMSNQDVIKAVDEGYRLPP 271
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
               +DC  ++   M  CW++D   RP
Sbjct: 272 ---PMDCPAALYQLMLDCWQKDRNNRP 295

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 144 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 200
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 201 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 255
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 256 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 301

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 150 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 206
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 207 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 261
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 262 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 307

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 143 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 199
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 200 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 254
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 255 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 300

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 20  NIPIGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD 78
            IP+ +++ +    S+GM +L +   + H NL + N L+ +R   +I+DFGL       D
Sbjct: 432 EIPVSNVAELLHQVSMGMKYLEEKNFV-HRNLAARNVLLVNRHYAKISDFGLSKALGADD 490
Query: 79  ETGQERKLRRRKL-YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTD 136
                R   +  L + APE +   +  + + + DV+S+G+ ++E +   Q P+   +M  
Sbjct: 491 SYYTARSAGKWPLKWYAPECI---NFRKFSSRSDVWSYGVTMWEALSYGQKPYK--KMKG 545
Query: 137 EEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKA 196
            E++  + QG  +       +C P + A M  CW    E RPD   V  +++     L +
Sbjct: 546 PEVMAFIEQGKRME---CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 602
Query: 197 NI 198
            +
Sbjct: 603 KV 604

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 150 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 206
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 207 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 261
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 262 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 307

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 140 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 196
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 197 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 251
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 252 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 297

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC++   + ++I DFG+    ++      G +  L  R  +
Sbjct: 137 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 193
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 194 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 248
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   +   MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 249 PD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 294

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 85/171 (49%), Gaps = 18/171 (10%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH--AFKAGQDETGQE 83
           + + +  + GM++L     + H +L + NCL+ +  +++I DFG+    +       G  
Sbjct: 136 LHIASQIASGMVYLASQHFV-HRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGH 194
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIIT 141
             L  R +     + R     + T + DV+SFG++L+E+   G+Q PW   ++++ E+I 
Sbjct: 195 TMLPIRWMPPESIMYR-----KFTTESDVWSFGVILWEIFTYGKQ-PW--FQLSNTEVIE 246
Query: 142 SVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMN 191
            +TQG  L RP      C   +   M  CW+ +P+ R +++ ++  L  + 
Sbjct: 247 CITQGRVLERPRV----CPKEVYDVMLGCWQREPQQRLNIKEIYKILHALG 293

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 23/167 (13%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---------GQE 83
           + GM +L D   + H  L + N L++S  V +++DFGL  F   +D+T         G +
Sbjct: 119 AAGMKYLADMNYV-HRALAARNILVNSNLVCKVSDFGLSRFL--EDDTSDPTYTSALGGK 175
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSV 143
             +R    + APE ++       T   DV+S+G+V++EV+   G   +  MT++++I ++
Sbjct: 176 IPIR----WTAPEAIQYRKF---TSASDVWSYGIVMWEVMS-YGERPYWDMTNQDVINAI 227
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            Q   L P    +DC  ++   M  CW++D   RP    + + L +M
Sbjct: 228 EQDYRLPP---PMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKM 271

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQERKLRRRKLY 92
           GM +L+ ++ + H +L + NC +   + ++I DFG+    ++      G +  L  R  +
Sbjct: 137 GMAYLNANKFV-HRDLAARNCXVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--W 193
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGL-R 150
            +PE L+       T   DV+SFG+VL+E+    + P+  L  ++E+++  V +G  L +
Sbjct: 194 MSPESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQGL--SNEQVLRFVMEGGLLDK 248
Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPD-LRFVHHKLKEMNAGLKANIF 199
           PD    +C   ++  MR CW+ +P++RP  L  +    +EM  G +   F
Sbjct: 249 PD----NCPDMLLELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSF 294

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 45  ISHGNLRSSNCLIDSR-----WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR 99
           I H +LRS N  + S         ++ADFGL      Q        L     + APE + 
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFGL-----SQQSVHSVSGLLGNFQWMAPETIG 199
Query: 100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCA 159
                  T+K D YSF ++LY ++  +GP+        + I  + +  GLRP T   DC 
Sbjct: 200 AEE-ESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE-EGLRP-TIPEDCP 256
Query: 160 PSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           P +   +  CW  DP+ RP   ++  +L E+
Sbjct: 257 PRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQE 83
           I +    + GM +L+  + + H NL + NC++   + ++I DFG+    ++      G +
Sbjct: 134 IQMAAEIADGMAYLNAKKFV-HRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGK 192
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITS 142
             L  R  + APE L+       T   D++SFG+VL+E+    + P+  L  ++E+++  
Sbjct: 193 GLLPVR--WMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQGL--SNEQVLKF 245
Query: 143 VTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           V  G  L +PD    +C   +   MR CW+ +P +RP    + + LK+
Sbjct: 246 VMDGGYLDQPD----NCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKD 289

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQE 83
           I +    + GM +L+  + + H NL + NC++   + ++I DFG+    ++      G +
Sbjct: 133 IQMAAEIADGMAYLNAKKFV-HRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGK 191
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITS 142
             L  R  + APE L+       T   D++SFG+VL+E+    + P+  L  ++E+++  
Sbjct: 192 GLLPVR--WMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQGL--SNEQVLKF 244
Query: 143 VTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           V  G  L +PD    +C   +   MR CW+ +P +RP    + + LK+
Sbjct: 245 VMDGGYLDQPD----NCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKD 288

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 12/181 (6%)
Query: 21  IPIGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE 79
           IP+ +++ +    S+GM +L +   + H +L + N L+ +R   +I+DFGL       D 
Sbjct: 107 IPVSNVAELLHQVSMGMKYLEEKNFV-HRDLAARNVLLVNRHYAKISDFGLSKALGADDS 165
Query: 80  TGQERKLRRRKL-YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDE 137
               R   +  L + APE +   +  + + + DV+S+G+ ++E +   Q P+   +M   
Sbjct: 166 YYTARSAGKWPLKWYAPECI---NFRKFSSRSDVWSYGVTMWEALSYGQKPYK--KMKGP 220
Query: 138 EIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKAN 197
           E++  + QG  +       +C P + A M  CW    E RPD   V  +++     L + 
Sbjct: 221 EVMAFIEQGKRME---CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASK 277
Query: 198 I 198
           +
Sbjct: 278 V 278

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 29/190 (15%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +LH   II H +L S NCL+     + +ADFGL       DE  Q   
Sbjct: 111 VSFAKDIASGMAYLHSMNII-HRDLNSHNCLVRENKNVVVADFGLARLMV--DEKTQPEG 167
Query: 86  LR------RRKLYK--------APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGH 131
           LR      R+K Y         APE++         +K DV+SFG+VL E+IGR      
Sbjct: 168 LRSLKKPDRKKRYTVVGNPYWMAPEMINGRSY---DEKVDVFSFGIVLCEIIGR------ 218
Query: 132 LRMTDEEIITSVTQGSGLRPDTSSL---DCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           +    + +  ++  G  +R         +C PS       C + DPE RP    + H L+
Sbjct: 219 VNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLE 278
Query: 189 EMNAGLKANI 198
            +   L  ++
Sbjct: 279 TLRMHLAGHL 288

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQE 83
           I +    + GM +L+  + + H +L + NC++   + ++I DFG+    ++      G +
Sbjct: 133 IQMAAEIADGMAYLNAKKFV-HRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYYRKGGK 191
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITS 142
             L  R  + APE L+       T   D++SFG+VL+E+    + P+  L  ++E+++  
Sbjct: 192 GLLPVR--WMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQGL--SNEQVLKF 244
Query: 143 VTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           V  G  L +PD    +C   +   MR CW+ +P++RP    + + LK+
Sbjct: 245 VMDGGYLDQPD----NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD 288

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L ++ +I H +L + NCL+    V++++DFG+  F    D+       +    + +
Sbjct: 115 GMAYLEEASVI-HRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWAS 172
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE+       R + K DV+SFG++++EV   +G   +   ++ E++  ++ G  L +P  
Sbjct: 173 PEVFS---FSRYSSKSDVWSFGVLMWEVFS-EGKIPYENRSNSEVVEDISTGFRLYKPRL 228
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNA 192
           +S      +   M  CW+E PE RP    +  +L  + A
Sbjct: 229 AS----THVYQIMNHCWKERPEDRPAFSRLLRQLAAIAA 263

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I +    + GM +L+  + + H +L + NC++   + ++I DFG+        ET   RK
Sbjct: 133 IQMAAEIADGMAYLNAKKFV-HRDLAARNCMVAHDFTVKIGDFGM---TRDIXETDXXRK 188
Query: 86  LRRRKL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIIT 141
             +  L   + APE L+       T   D++SFG+VL+E+    + P+  L  ++E+++ 
Sbjct: 189 GGKGLLPVRWMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQGL--SNEQVLK 243
Query: 142 SVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
            V  G  L +PD    +C   +   MR CW+ +P++RP    + + LK+
Sbjct: 244 FVMDGGYLDQPD----NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD 288

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I +    + GM +L+  + + H +L + NC++   + ++I DFG+        ET   RK
Sbjct: 130 IQMAAEIADGMAYLNAKKFV-HRDLAARNCMVAHDFTVKIGDFGM---TRDIXETDXXRK 185
Query: 86  LRRRKL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIIT 141
             +  L   + APE L+       T   D++SFG+VL+E+    + P+  L  ++E+++ 
Sbjct: 186 GGKGLLPVRWMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQGL--SNEQVLK 240
Query: 142 SVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
            V  G  L +PD    +C   +   MR CW+ +P++RP    + + LK+
Sbjct: 241 FVMDGGYLDQPD----NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD 285

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM ++     I H +LR++N L+    + +IADFGL       + T +E  
Sbjct: 112 IDFSAQIAEGMAYIERKNYI-HRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGA 170
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE +   +    T K +V+SFG++LYE++   G   +   T+ +++++++Q
Sbjct: 171 KFPIK-WTAPEAI---NFGCFTIKSNVWSFGILLYEIV-TYGKIPYPGRTNADVMSALSQ 225
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  + P     +C   +   M+ CW+E  E RP   ++   L +
Sbjct: 226 GYRM-PRME--NCPDELYDIMKMCWKEKAEERPTFDYLQSVLDD 266

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L ++ +I H +L + NCL+    V++++DFG+  F    D+       +    + +
Sbjct: 113 GMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWAS 170
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE+       R + K DV+SFG++++EV   +G   +   ++ E++  ++ G  L +P  
Sbjct: 171 PEVFS---FSRYSSKSDVWSFGVLMWEVFS-EGKIPYENRSNSEVVEDISTGFRLYKPRL 226
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +S      +   M  CW+E PE RP    +  +L E+
Sbjct: 227 AS----THVYQIMNHCWKERPEDRPAFSRLLRQLAEI 259

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L ++ +I H +L + NCL+    V++++DFG+  F    D+       +    + +
Sbjct: 115 GMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWAS 172
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE+       R + K DV+SFG++++EV   +G   +   ++ E++  ++ G  L +P  
Sbjct: 173 PEVFS---FSRYSSKSDVWSFGVLMWEVFS-EGKIPYENRSNSEVVEDISTGFRLYKPRL 228
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +S      +   M  CW+E PE RP    +  +L E+
Sbjct: 229 AS----THVYQIMNHCWKERPEDRPAFSRLLRQLAEI 261

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I +    + GM +L+  + + H +L + NC++   + ++I DFG+        ET   RK
Sbjct: 133 IQMAAEIADGMAYLNAKKFV-HRDLAARNCMVAHDFTVKIGDFGM---TRDIXETDXXRK 188
Query: 86  LRRRKL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIIT 141
             +  L   + APE L+       T   D++SFG+VL+E+    + P+  L  ++E+++ 
Sbjct: 189 GGKGLLPVRWMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQGL--SNEQVLK 243
Query: 142 SVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
            V  G  L +PD    +C   +   MR CW+ +P +RP    + + LK+
Sbjct: 244 FVMDGGYLDQPD----NCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKD 288

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQE 83
           I +    + GM +L+  + + H +L + NC++   + ++I DFG+    ++      G +
Sbjct: 133 IQMAAEIADGMAYLNAKKFV-HRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGK 191
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITS 142
             L  R  + APE L+       T   D++SFG+VL+E+    + P+  L  ++E+++  
Sbjct: 192 GLLPVR--WMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQGL--SNEQVLKF 244
Query: 143 VTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           V  G  L +PD    +C   +   MR CW+ +P++RP    + + LK+
Sbjct: 245 VMDGGYLDQPD----NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD 288

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L ++ +I H +L + NCL+    V++++DFG+  F    D+       +    + +
Sbjct: 135 GMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWAS 192
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE+       R + K DV+SFG++++EV   +G   +   ++ E++  ++ G  L +P  
Sbjct: 193 PEVFS---FSRYSSKSDVWSFGVLMWEVFS-EGKIPYENRSNSEVVEDISTGFRLYKPRL 248
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +S      +   M  CW+E PE RP    +  +L E+
Sbjct: 249 AS----THVYQIMNHCWKERPEDRPAFSRLLRQLAEI 281

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L ++ +I H +L + NCL+    V++++DFG+  F    D+       +    + +
Sbjct: 118 GMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWAS 175
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE+       R + K DV+SFG++++EV   +G   +   ++ E++  ++ G  L +P  
Sbjct: 176 PEVFS---FSRYSSKSDVWSFGVLMWEVFS-EGKIPYENRSNSEVVEDISTGFRLYKPRL 231
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +S      +   M  CW E PE RP    +  +L E+
Sbjct: 232 AS----THVYQIMNHCWRERPEDRPAFSRLLRQLAEI 264

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 45  ISHGNLRSSNCLIDSR-----WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR 99
           I H +LRS N  + S         ++ADFG       Q        L     + APE + 
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFG-----TSQQSVHSVSGLLGNFQWMAPETIG 199
Query: 100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCA 159
                  T+K D YSF ++LY ++  +GP+        + I  + +  GLRP T   DC 
Sbjct: 200 AEE-ESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE-EGLRP-TIPEDCP 256
Query: 160 PSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           P +   +  CW  DP+ RP   ++  +L E+
Sbjct: 257 PRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L ++ +I H +L + NCL+    V++++DFG+  F    D+       +    + +
Sbjct: 116 GMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWAS 173
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE+       R + K DV+SFG++++EV   +G   +   ++ E++  ++ G  L +P  
Sbjct: 174 PEVFS---FSRYSSKSDVWSFGVLMWEVFS-EGKIPYENRSNSEVVEDISTGFRLYKPRL 229
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +S      +   M  CW E PE RP    +  +L E+
Sbjct: 230 AS----THVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDETGQE 83
           I +    + GM +L+  + + H +L + NC++   + ++I DFG+    ++      G +
Sbjct: 132 IQMAAEIADGMAYLNAKKFV-HRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGK 190
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITS 142
             L  R  + APE L+       T   D++SFG+VL+E+    + P+  L  ++E+++  
Sbjct: 191 GLLPVR--WMAPESLKDGVF---TTSSDMWSFGVVLWEITSLAEQPYQGL--SNEQVLKF 243
Query: 143 VTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           V  G  L +PD    +C   +   MR CW+ +P++RP    + + LK+
Sbjct: 244 VMDGGYLDQPD----NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD 287

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  +     I H +LR++N L+ +  V +IADFGL          G +  
Sbjct: 281 IDFSAQIAEGMAFIEQRNYI-HRDLRAANILVSASLVCKIADFGLA-------RVGAKFP 332
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
           ++    + APE +   +    T K DV+SFG++L E++   G   +  M++ E+I ++ +
Sbjct: 333 IK----WTAPEAI---NFGSFTIKSDVWSFGILLMEIV-TYGRIPYPGMSNPEVIRALER 384
Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           G  + RP+    +C   +   M  CW+  PE RP   ++   L + 
Sbjct: 385 GYRMPRPE----NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 426

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L   + I H NL + N L+   +V +IADFGL     GQ+   ++   R    + A
Sbjct: 151 GMDYLSQKQFI-HRNLAARNILVGENYVAKIADFGL---SRGQEVYVKKTMGRLPVRWMA 206
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
            E L   +    T   DV+S+G++L+E++   G   +  MT  E+   + QG  L     
Sbjct: 207 IESL---NYSVYTTNSDVWSYGVLLWEIVSLGGT-PYCGMTCAELYEKLPQGYRLE---K 259
Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            L+C   +   MR CW E P  RP    +   L  M
Sbjct: 260 PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 295

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 45  ISHGNLRSSNCLIDSR-----WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR 99
           I H +LRS N  + S         ++ADF L      Q        L     + APE + 
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFSL-----SQQSVHSVSGLLGNFQWMAPETIG 199
Query: 100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCA 159
                  T+K D YSF ++LY ++  +GP+        + I  + +  GLRP T   DC 
Sbjct: 200 AEE-ESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE-EGLRP-TIPEDCP 256
Query: 160 PSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           P +   +  CW  DP+ RP   ++  +L E+
Sbjct: 257 PRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L +   + H +L + N L++S  V +++DFGL  F         E      K+   
Sbjct: 130 GMRYLAEMSYV-HRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIR 188
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + APE +      + T   D +S+G+V++EV+  G +  W    M+++++I ++ Q   L
Sbjct: 189 WTAPEAI---AFRKFTSASDAWSYGIVMWEVMSFGERPYWD---MSNQDVINAIEQDYRL 242
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            P     DC  S+   M  CW++D   RP    V   L +M
Sbjct: 243 PPPP---DCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKM 280

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 34  VGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF-----KAGQDETGQERKLRR 88
            GM +L D   + H +L + N L+DS  V +++DFGL         A    TG +  +R 
Sbjct: 162 AGMRYLSDLGYV-HRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIR- 219
Query: 89  RKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG 148
              + APE +        +   DV+SFG+V++EV+   G   +  MT+ ++I+SV +G  
Sbjct: 220 ---WTAPEAI---AFRTFSSASDVWSFGVVMWEVLA-YGERPYWNMTNRDVISSVEEGYR 272
Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           L    + + C  ++   M  CW +D   RP
Sbjct: 273 L---PAPMGCPHALHQLMLDCWHKDRAQRP 299

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG 106
           H +L + N L+    V +++DFGL    +   +TG   KL  +  + APE LR+      
Sbjct: 125 HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG---KLPVK--WTAPEALREKKF--- 176
Query: 107 TQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSII 163
           + K DV+SFG++L+E+   GR  P+  + + D  ++  V +G  +  PD     C P++ 
Sbjct: 177 STKSDVWSFGILLWEIYSFGRV-PYPRIPLKD--VVPRVEKGYKMDAPD----GCPPAVY 229
Query: 164 ACMRTCWEEDPELRPDLRFVHHKLKEM 190
             M+ CW  D  +RP    +  +L+ +
Sbjct: 230 EVMKNCWHLDAAMRPSFLQLREQLEHI 256

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 34  VGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF-----KAGQDETGQERKLRR 88
            GM +L D   + H +L + N L+DS  V +++DFGL         A    TG +  +R 
Sbjct: 162 AGMRYLSDLGYV-HRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIR- 219
Query: 89  RKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG 148
              + APE +        +   DV+SFG+V++EV+   G   +  MT+ ++I+SV +G  
Sbjct: 220 ---WTAPEAI---AFRTFSSASDVWSFGVVMWEVLA-YGERPYWNMTNRDVISSVEEGYR 272
Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           L    + + C  ++   M  CW +D   RP
Sbjct: 273 L---PAPMGCPHALHQLMLDCWHKDRAQRP 299

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N L++S  V +++DFG+   +  +D+       R  K+   
Sbjct: 143 GMKYLSDMSAV-HRDLAARNILVNSNLVCKVSDFGMS--RVLEDDPEAAYTTRGGKIPIR 199
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + APE +        T   DV+S+G+V++EV+   G   +  M+++++I ++ +G  L P
Sbjct: 200 WTAPEAIAYRKF---TSASDVWSYGIVMWEVMS-YGERPYWDMSNQDVIKAIEEGYRLPP 255
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +DC  ++   M  CW+++   RP    + + L ++
Sbjct: 256 ---PMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKL 291

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG 106
           H +L + N L+    V +++DFGL    +   +TG   KL  +  + APE LR+      
Sbjct: 140 HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG---KLPVK--WTAPEALREKKF--- 191
Query: 107 TQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSII 163
           + K DV+SFG++L+E+   GR  P+  + + D  ++  V +G  +  PD     C P++ 
Sbjct: 192 STKSDVWSFGILLWEIYSFGRV-PYPRIPLKD--VVPRVEKGYKMDAPD----GCPPAVY 244
Query: 164 ACMRTCWEEDPELRPDLRFVHHKLKEMN 191
             M+ CW  D  +RP    +  +L+ + 
Sbjct: 245 EVMKNCWHLDAAMRPSFLQLREQLEHIK 272

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 117 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGA 175
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 176 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 230
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 231 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG 106
           H +L + N L+    V +++DFGL    +   +TG   KL  +  + APE LR+      
Sbjct: 131 HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG---KLPVK--WTAPEALREAAF--- 182
Query: 107 TQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSII 163
           + K DV+SFG++L+E+   GR  P+  + + D  ++  V +G  +  PD     C P++ 
Sbjct: 183 STKSDVWSFGILLWEIYSFGRV-PYPRIPLKD--VVPRVEKGYKMDAPD----GCPPAVY 235
Query: 164 ACMRTCWEEDPELRPDLRFVHHKLKEM 190
             M+ CW  D  +RP    +  +L+ +
Sbjct: 236 EVMKNCWHLDAAMRPSFLQLREQLEHI 262

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 106 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 164
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 165 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 219
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 220 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 260

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 108 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 166
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 167 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 221
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 222 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 262

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 41  DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKLYKAPEL 97
           +S+   H +L + NCL++ + V++++DFGL  +    +ET   G +  +R    +  PE+
Sbjct: 137 ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFPVR----WSPPEV 192
Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSL 156
           L        + K D+++FG++++E+    G   + R T+ E    + QG  L RP  +S 
Sbjct: 193 LMYSKF---SSKSDIWAFGVLMWEIYSL-GKMPYERFTNSETAEHIAQGLRLYRPHLAS- 247
Query: 157 DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNM 202
                +   M +CW E  + RP  +            L +NI D M
Sbjct: 248 ---EKVYTIMYSCWHEKADERPTFKI-----------LLSNILDVM 279

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N L++S  V +++DFG+   +  +D+       R  K+   
Sbjct: 128 GMKYLSDMSYV-HRDLAARNILVNSNLVCKVSDFGMS--RVLEDDPEAAYTTRGGKIPIR 184
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + APE +        T   DV+S+G+V++EV+   G   +  M+++++I ++ +G  L P
Sbjct: 185 WTAPEAIAYRKF---TSASDVWSYGIVMWEVMS-YGERPYWDMSNQDVIKAIEEGYRLPP 240
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +DC  ++   M  CW+++   RP    + + L ++
Sbjct: 241 ---PMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKL 276

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N L++S  V +++DFG+   +  +D+       R  K+   
Sbjct: 122 GMKYLSDMSYV-HRDLAARNILVNSNLVCKVSDFGMS--RVLEDDPEAAYTTRGGKIPIR 178
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + APE +        T   DV+S+G+V++EV+   G   +  M+++++I ++ +G  L P
Sbjct: 179 WTAPEAIAYRKF---TSASDVWSYGIVMWEVMS-YGERPYWDMSNQDVIKAIEEGYRLPP 234
Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +DC  ++   M  CW+++   RP    + + L ++
Sbjct: 235 ---PMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKL 270

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 41  DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ 100
           +S+   H +L + NCL++ + V++++DFGL  +    DE    R  +    +  PE+L  
Sbjct: 122 ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY-VLDDEYTSSRGSKFPVRWSPPEVLM- 179
Query: 101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCA 159
               + + K D+++FG++++E+    G   + R T+ E    + QG  L RP  +S    
Sbjct: 180 --YSKFSSKSDIWAFGVLMWEIYSL-GKMPYERFTNSETAEHIAQGLRLYRPHLAS---- 232
Query: 160 PSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNM 202
             +   M +CW E  + RP  +            L +NI D M
Sbjct: 233 EKVYTIMYSCWHEKADERPTFKI-----------LLSNILDVM 264

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 117 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 175
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 176 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 230
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 231 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 117 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 175
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 176 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 230
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 231 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 117 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 175
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 176 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 230
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 231 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 117 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 175
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 176 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 230
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 231 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 117 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 175
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 176 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 230
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 231 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 117 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 175
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 176 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 230
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 231 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L   + I H +L + N L+   +V +IADFGL     GQ+   ++   R    + A
Sbjct: 144 GMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGL---SRGQEVYVKKTMGRLPVRWMA 199
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
            E L   +    T   DV+S+G++L+E++   G   +  MT  E+   + QG  L     
Sbjct: 200 IESL---NYSVYTTNSDVWSYGVLLWEIVSLGGT-PYCGMTCAELYEKLPQGYRLE---K 252
Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            L+C   +   MR CW E P  RP    +   L  M
Sbjct: 253 PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 288

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 23/165 (13%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF--KAGQDET-----GQERKLR 87
           GM +L +   + H +L + N L++S  V +++DFGL  F  +   D T     G +  +R
Sbjct: 128 GMRYLAEMSYV-HRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIR 186
Query: 88  RRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQ 145
               + APE +      + T   D +S+G+V++EV+  G +  W    M+++++I ++ Q
Sbjct: 187 ----WTAPEAI---AFRKFTSASDAWSYGIVMWEVMSFGERPYWD---MSNQDVINAIEQ 236
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              L P     DC  S+   M  CW++D   RP    V   L +M
Sbjct: 237 DYRLPPPP---DCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKM 278

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 284 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGA 342
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 343 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 397
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 398 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 438

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L   + I H +L + N L+   +V +IADFGL     GQ+   ++   R    + A
Sbjct: 154 GMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGL---SRGQEVYVKKTMGRLPVRWMA 209
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
            E L   +    T   DV+S+G++L+E++   G   +  MT  E+   + QG  L     
Sbjct: 210 IESL---NYSVYTTNSDVWSYGVLLWEIVSLGGT-PYCGMTCAELYEKLPQGYRLE---K 262
Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            L+C   +   MR CW E P  RP    +   L  M
Sbjct: 263 PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + ++   + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 114 VDMSAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 173 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 227
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW ++PE RP   ++   L++
Sbjct: 228 GYRM---PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 268

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 26  ISVNTTASV------GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE 79
           + VN T  +      GM +LH   I+ H +L+S N   D+  V+ I DFGL +       
Sbjct: 127 LDVNKTRQIAQEIVKGMGYLHAKGIL-HKDLKSKNVFYDNGKVV-ITDFGLFSISGVLQA 184
Query: 80  TGQERKLRRRK---LYKAPELLRQ-------PHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
             +E KLR +     + APE++RQ         LP  ++  DV++ G + YE+  R+ P+
Sbjct: 185 GRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPF-SKHSDVFALGTIWYELHAREWPF 243
Query: 130 GHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
                  E II  +  G+G++P+ S +     I   +  CW  + E RP
Sbjct: 244 K--TQPAEAIIWQM--GTGMKPNLSQIGMGKEISDILLFCWAFEQEERP 288

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 17/151 (11%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF-----KAGQDETGQERKLR 87
           + GM +L +   + H +L + N L++S  V +++DFGL        +A    +G +  +R
Sbjct: 157 AAGMKYLANMNYV-HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIR 215
Query: 88  RRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS 147
               + APE +        T   DV+SFG+V++EV+   G   +  +++ E++ ++  G 
Sbjct: 216 ----WTAPEAISYRKF---TSASDVWSFGIVMWEVM-TYGERPYWELSNHEVMKAINDGF 267
Query: 148 GLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
            L    + +DC  +I   M  CW+++   RP
Sbjct: 268 RL---PTPMDCPSAIYQLMMQCWQQERARRP 295

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 17/163 (10%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAF-----KAGQDETGQERKLR 87
           + GM +L D   + H +L + N L++S  V +++DFGL        +A    TG +  +R
Sbjct: 155 AAGMRYLADMGYV-HRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVR 213
Query: 88  RRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS 147
               + APE ++       T   DV+S+G+V++EV+   G   +  M+++++I ++ +G 
Sbjct: 214 ----WTAPEAIQYRKF---TSASDVWSYGIVMWEVMS-YGERPYWDMSNQDVIKAIEEGY 265
Query: 148 GLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            L    + +DC   +   M  CW+++   RP    +   L +M
Sbjct: 266 RL---PAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKM 305

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 107 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGA 165
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 166 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 220
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW ++PE RP   ++   L++
Sbjct: 221 GYRM---PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 261

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    V+++ADFGL     G   T     
Sbjct: 133 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGA 191
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L        + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 192 KFPIK-WTAPESLAYNTF---SIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYDLLE 245
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +G  + +P+     C P +   MR CW+  P  RP     H   + M
Sbjct: 246 KGYRMEQPE----GCPPKVYELMRACWKWSPADRPSFAETHQAFETM 288

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + ++   + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 114 VDMSAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEWTARQGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 173 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 227
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW ++PE RP   ++   L++
Sbjct: 228 GYRM---PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 268

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG--QDETGQERKLRRR 89
           A+ GM +L +S+   H +L + NCL+  + VL+I+DFG+   +A      +G  R++  +
Sbjct: 222 AAAGMEYL-ESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVK 280
Query: 90  KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE L   +  R + + DV+SFG++L+E     G   +  +++++    V +G  L
Sbjct: 281 --WTAPEAL---NYGRYSSESDVWSFGILLWETFSL-GASPYPNLSNQQTREFVEKGGRL 334
Query: 150 R-PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P+     C  ++   M  CW  +P  RP    ++ +L+ +
Sbjct: 335 PCPEL----CPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSI 372

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
           A+ G+  LH++  I H +++S+N L+D  +  +I+DFGL        +T    ++     
Sbjct: 142 AANGINFLHENHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTA 200
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGH----LRMTDEEIITSVTQG 146
           Y APE LR    P    K D+YSFG+VL E+I G      H    L +  +E I    + 
Sbjct: 201 YMAPEALRGEITP----KSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKT 256
Query: 147 SGLRPDTSSLDCAPSIIACMRT----CWEEDPELRPDLRFVHHKLKEMNA 192
                D    D   + +  M +    C  E    RPD++ V   L+EM A
Sbjct: 257 IEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG--QDETGQERKLRRR 89
           A+ GM +L +S+   H +L + NCL+  + VL+I+DFG+   +A      +G  R++  +
Sbjct: 222 AAAGMEYL-ESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVK 280
Query: 90  KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE L   +  R + + DV+SFG++L+E     G   +  +++++    V +G  L
Sbjct: 281 --WTAPEAL---NYGRYSSESDVWSFGILLWETFSL-GASPYPNLSNQQTREFVEKGGRL 334
Query: 150 R-PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P+     C  ++   M  CW  +P  RP    ++ +L+ +
Sbjct: 335 PCPEL----CPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSI 372

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
           A+ G+  LH++  I H +++S+N L+D  +  +I+DFGL        +T    ++     
Sbjct: 142 AANGINFLHENHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTA 200
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGH----LRMTDEEIITSVTQG 146
           Y APE LR    P    K D+YSFG+VL E+I G      H    L +  +E I    + 
Sbjct: 201 YMAPEALRGEITP----KSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKT 256
Query: 147 SGLRPDTSSLDCAPSIIACMRT----CWEEDPELRPDLRFVHHKLKEMNA 192
                D    D   + +  M +    C  E    RPD++ V   L+EM A
Sbjct: 257 IEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 18/147 (12%)
Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRG 106
           H +L + N L+    V +++DFGL    +   +TG   KL  +  + APE LR+      
Sbjct: 312 HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG---KLPVK--WTAPEALREKKF--- 363
Query: 107 TQKGDVYSFGLVLYEV--IGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSII 163
           + K DV+SFG++L+E+   GR  P+  + + D  ++  V +G  +  PD     C P++ 
Sbjct: 364 STKSDVWSFGILLWEIYSFGRV-PYPRIPLKD--VVPRVEKGYKMDAPD----GCPPAVY 416
Query: 164 ACMRTCWEEDPELRPDLRFVHHKLKEM 190
             M+ CW  D   RP    +  +L+ +
Sbjct: 417 DVMKNCWHLDAATRPTFLQLREQLEHI 443

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 110 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 168
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 169 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 223
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW ++PE RP   ++   L++
Sbjct: 224 GYRM---PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 264

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 283 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 341
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 342 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 396
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW ++PE RP   ++   L++
Sbjct: 397 GYRM---PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 283 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 341
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 342 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 396
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW ++PE RP   ++   L++
Sbjct: 397 GYRM---PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 283 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 341
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 342 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 396
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW ++PE RP   ++   L++
Sbjct: 397 GYRM---PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 437

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 39/181 (21%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           IS +   + GM  L   + I H +L + N L+    V++I DFGL               
Sbjct: 202 ISYSFQVARGMEFLSSRKCI-HRDLAARNILLSENNVVKICDFGLA-------------- 246
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGRQG-PWG 130
              R +YK P+ +R+    LP              + K DV+S+G++L+E+    G P+ 
Sbjct: 247 ---RDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYP 303
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
            ++M DE+  + + +G  +R P+ S+    P I   M  CW  DP+ RP    +  KL +
Sbjct: 304 GVQM-DEDFCSRLREGMRMRAPEYST----PEIYQIMLDCWHRDPKERPRFAELVEKLGD 358
Query: 190 M 190
           +
Sbjct: 359 L 359

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 41  DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKLYKAPEL 97
           +S+   H +L + NCL++ + V++++DFGL  +    + T   G +  +R    +  PE+
Sbjct: 121 ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVR----WSPPEV 176
Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSL 156
           L      + + K D+++FG++++E+    G   + R T+ E    + QG  L RP  +S 
Sbjct: 177 LM---YSKFSSKSDIWAFGVLMWEIYSL-GKMPYERFTNSETAEHIAQGLRLYRPHLAS- 231
Query: 157 DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNM 202
                +   M +CW E  + RP  +            L +NI D M
Sbjct: 232 ---EKVYTIMYSCWHEKADERPTFKI-----------LLSNILDVM 263

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 41  DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKLYKAPEL 97
           +S+   H +L + NCL++ + V++++DFGL  +    + T   G +  +R    +  PE+
Sbjct: 122 ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVR----WSPPEV 177
Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSL 156
           L      + + K D+++FG++++E+    G   + R T+ E    + QG  L RP  +S 
Sbjct: 178 LM---YSKFSSKSDIWAFGVLMWEIYSL-GKMPYERFTNSETAEHIAQGLRLYRPHLAS- 232
Query: 157 DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNM 202
                +   M +CW E  + RP  +            L +NI D M
Sbjct: 233 ---EKVYTIMYSCWHEKADERPTFKI-----------LLSNILDVM 264

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 41  DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKLYKAPEL 97
           +S+   H +L + NCL++ + V++++DFGL  +    + T   G +  +R    +  PE+
Sbjct: 117 ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVR----WSPPEV 172
Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSL 156
           L      + + K D+++FG++++E+    G   + R T+ E    + QG  L RP  +S 
Sbjct: 173 LM---YSKFSSKSDIWAFGVLMWEIYSL-GKMPYERFTNSETAEHIAQGLRLYRPHLAS- 227
Query: 157 DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNM 202
                +   M +CW E  + RP  +            L +NI D M
Sbjct: 228 ---EKVYTIMYSCWHEKADERPTFKI-----------LLSNILDVM 259

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 128 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 186
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 187 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 238
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 239 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 276

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM  L   + + H +L + NC++D ++ +++ADFGL        F +  ++
Sbjct: 134 IGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 192
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 193 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 244
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 245 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 282

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM  L   + + H +L + NC++D ++ +++ADFGL        F +  ++
Sbjct: 136 IGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 194
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 195 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 246
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 247 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 284

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H NL + NCL+    ++++ADFGL     G   T     
Sbjct: 321 LYMATQISSAMEYLEKKNFI-HRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 379
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 380 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 433
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 434 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 27/166 (16%)
Query: 41  DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKLYKAPEL 97
           +S+   H +L + NCL++ + V++++DFGL  +    + T   G +  +R    +  PE+
Sbjct: 137 ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVR----WSPPEV 192
Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSL 156
           L        + K D+++FG++++E+    G   + R T+ E    + QG  L RP  +S 
Sbjct: 193 LMYSKF---SSKSDIWAFGVLMWEIYSL-GKMPYERFTNSETAEHIAQGLRLYRPHLAS- 247
Query: 157 DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNM 202
                +   M +CW E  + RP  +            L +NI D M
Sbjct: 248 ---EKVYTIMYSCWHEKADERPTFKI-----------LLSNILDVM 279

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 155 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 213
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 214 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 265
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 266 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 303

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 136 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 194
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 195 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 246
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 247 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 284

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 131 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 189
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 190 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 241
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 242 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 279

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 133 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 191
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 192 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 243
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 244 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 281

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 41  DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET---GQERKLRRRKLYKAPEL 97
           +S+   H +L + NCL++ + V++++DFGL  +    + T   G +  +R    +  PE+
Sbjct: 128 ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVR----WSPPEV 183
Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSL 156
           L      + + K D+++FG++++E+    G   + R T+ E    + QG  L RP  +S 
Sbjct: 184 LM---YSKFSSKSDIWAFGVLMWEIYSL-GKMPYERFTNSETAEHIAQGLRLYRPHLAS- 238
Query: 157 DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNM 202
                +   M +CW E  + RP  +            L +NI D M
Sbjct: 239 ---EKVYTIMYSCWHEKADERPTFKI-----------LLSNILDVM 270

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM  L   + + H +L + NC++D ++ +++ADFGL        F +  ++
Sbjct: 136 IGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 194
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 195 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 246
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 247 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 284

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 136 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 194
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 195 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 246
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 247 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 284

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +LR++N L+    V ++ADFGL       + T ++  
Sbjct: 366 VDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA 424
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 425 KFPIK-WTAPEAAL---YGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 479
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW ++PE RP   ++   L++
Sbjct: 480 GYRM---PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLED 520

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM  L   + + H +L + NC++D ++ +++ADFGL        F +  ++
Sbjct: 141 IGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 199
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 200 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 251
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 252 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 289

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 135 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 193
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 194 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 245
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 246 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 283

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM  L   + + H +L + NC++D ++ +++ADFGL        F +  ++
Sbjct: 137 IGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 195
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 196 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 247
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 248 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 285

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 134 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 192
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 193 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 244
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 245 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 282

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM  L   + + H +L + NC++D ++ +++ADFGL        F +  ++
Sbjct: 137 IGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNK 195
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 196 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 247
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 248 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 285

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H NL + NCL+    ++++ADFGL     G   T     
Sbjct: 360 LYMATQISSAMEYLEKKNFI-HRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 418
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 419 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 472
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 473 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 515

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +    + GM ++     + H +L ++N L+    V ++ADFGL       + T ++  
Sbjct: 117 VDMAAQIASGMAYVERMNYV-HRDLAAANILVGENLVCKVADFGLARLIEDNEYTARQGA 175
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE        R T K DV+SFG++L E+  + G   +  M + E++  V +
Sbjct: 176 KFPIK-WTAPE---AALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQVER 230
Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
           G  +       +C  S+   M  CW +DPE RP   ++   L++
Sbjct: 231 GYRM---PCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLED 271

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL        + +  ++
Sbjct: 154 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK 212
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 213 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 264
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 265 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 302

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL------HAFKAGQDE 79
           I      + GM  L   + + H +L + NC++D ++ +++ADFGL        F +  ++
Sbjct: 195 IGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK 253
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
           TG +  ++    + A E L+     + T K DV+SFG++L+E++ R  P  +  +   +I
Sbjct: 254 TGAKLPVK----WMALESLQT---QKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDI 305
Query: 140 ITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
              + QG   L+P+     C   +   M  CW    E+RP  
Sbjct: 306 TVYLLQGRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 343

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 20/134 (14%)
Query: 19  FNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHAFKA 75
           FN    ++ +    S G+ +LH   I+ H +L+  N L++S+    +++I DFGL A   
Sbjct: 133 FNEVDAAVIIKQVLS-GVTYLHKHNIV-HRDLKPENLLLESKEKDALIKIVDFGLSAVFE 190
Query: 76  GQDETGQERKLRRR---KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHL 132
            Q      +K++ R     Y APE+LR+ +     +K DV+S G++L+ ++    P+G  
Sbjct: 191 NQ------KKMKERLGTAYYIAPEVLRKKY----DEKCDVWSIGVILFILLAGYPPFGG- 239
Query: 133 RMTDEEIITSVTQG 146
             TD+EI+  V +G
Sbjct: 240 -QTDQEILRKVEKG 252

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 8/155 (5%)
Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL 97
           H+H   ++ H +++ +N  I +  V+++ D GL  F + +  T     L     Y +PE 
Sbjct: 151 HMHSRRVM-HRDIKPANVFITATGVVKLGDLGLGRFFSSK--TTAAHSLVGTPYYMSPER 207
Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLD 157
           +   H      K D++S G +LYE+   Q P+   +M    +   + Q     P   S  
Sbjct: 208 I---HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD--YPPLPSDH 262
Query: 158 CAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNA 192
            +  +   +  C   DPE RPD+ +V+   K M+A
Sbjct: 263 YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHA 297

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 15/178 (8%)
Query: 17  SPFNIPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAF 73
           +PFN+P+ + +      + GM +L     I H +L + NC++     + +ADFGL    +
Sbjct: 130 NPFNLPLQTLVRFMVDIACGMEYLSSRNFI-HRDLAARNCMLAEDMTVCVADFGLSRKIY 188
Query: 74  KAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHL 132
                  G   KL  + L  A E L        T   DV++FG+ ++E++ R Q P+  +
Sbjct: 189 SGDYYRQGCASKLPVKWL--ALESLADNLY---TVHSDVWAFGVTMWEIMTRGQTPYAGI 243
Query: 133 RMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              + EI   +  G+ L+      +C   +   M  CW  DP+ RP    +  +L+ +
Sbjct: 244 E--NAEIYNYLIGGNRLKQPP---ECMEEVYDLMYQCWSADPKQRPSFTCLRMELENI 296

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 119 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 177
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 178 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 231
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 232 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 274

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 119 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 178 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 231
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 232 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 274

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
           A+ G+  LH++  I H +++S+N L+D  +  +I+DFGL        +     ++     
Sbjct: 136 AANGINFLHENHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTA 194
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGH----LRMTDEEIITSVTQG 146
           Y APE LR    P    K D+YSFG+VL E+I G      H    L +  +E I    + 
Sbjct: 195 YMAPEALRGEITP----KSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKT 250
Query: 147 SGLRPDTSSLDCAPSIIACMRT----CWEEDPELRPDLRFVHHKLKEMNA 192
                D    D   + +  M +    C  E    RPD++ V   L+EM A
Sbjct: 251 IEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 300

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 119 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 178 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 231
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 232 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 274

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 114 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 173 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 226
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 227 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 114 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 173 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 226
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 227 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 112 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 170
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE L      + + K DV++FG++L+E I   G   +  +   ++   + +
Sbjct: 171 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWE-IATYGMSPYPGIDPSQVYELLEK 225
Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 226 DYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 267

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 112 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 170
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE L      + + K DV++FG++L+E I   G   +  +   ++   + +
Sbjct: 171 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWE-IATYGMSPYPGIDPSQVYELLEK 225
Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 226 DYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 267

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 115 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 173
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 174 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 227
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 228 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 270

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 8/156 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I      + GM +L   + + H +L + NC++D ++ +++ADFGL A      E      
Sbjct: 135 IGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGL-ARDMYDKEXXSVHN 192
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               KL      L      + T K DV+SFG++L+E++ R  P  +  +   +I   + Q
Sbjct: 193 KTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAP-PYPDVNTFDITVYLLQ 251
Query: 146 GSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
           G   L+P+     C   +   M  CW    E+RP  
Sbjct: 252 GRRLLQPEY----CPDPLYEVMLKCWHPKAEMRPSF 283

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 118 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 176
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 177 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 230
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 231 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 273

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHA-FKAGQDETGQERKLRRRK 90
           G  +LH   I+ H +L+  N L++S+    +++I DFGL A F+ G    G+ ++     
Sbjct: 133 GTTYLHKHNIV-HRDLKPENLLLESKSRDALIKIVDFGLSAHFEVG----GKMKERLGTA 187
Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG 148
            Y APE+LR+ +     +K DV+S G++LY ++    P+G    TD+EI+  V +G  S 
Sbjct: 188 YYIAPEVLRKKY----DEKCDVWSCGVILYILLCGYPPFGG--QTDQEILKRVEKGKFSF 241
Query: 149 LRPD-TSSLDCAPSIIACMRT 168
             PD T   D A  ++  M T
Sbjct: 242 DPPDWTQVSDEAKQLVKLMLT 262

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 119 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 178 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 231
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 232 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 274

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 127 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 185
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 186 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 239
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 240 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 282

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 116 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 175 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 228
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 229 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 271

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHA-FKAGQDETGQERKLRRRK 90
           G  +LH   I+ H +L+  N L++S+    +++I DFGL A F+ G    G+ ++     
Sbjct: 116 GTTYLHKHNIV-HRDLKPENLLLESKSRDALIKIVDFGLSAHFEVG----GKMKERLGTA 170
Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG 148
            Y APE+LR+ +     +K DV+S G++LY ++    P+G    TD+EI+  V +G  S 
Sbjct: 171 YYIAPEVLRKKY----DEKCDVWSCGVILYILLCGYPPFGG--QTDQEILKRVEKGKFSF 224
Query: 149 LRPD-TSSLDCAPSIIACMRT 168
             PD T   D A  ++  M T
Sbjct: 225 DPPDWTQVSDEAKQLVKLMLT 245

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 114 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 173 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 226
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 227 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 119 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 178 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 231
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 232 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 274

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 116 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 175 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 228
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 229 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 271

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +   A+ G+ +LH   II H +++S N L+D  +V +I DFG+       D+T     
Sbjct: 142 LEICIGAARGLHYLHTRAII-HRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXV 200
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI 123
           ++    Y  PE   +  L   T+K DVYSFG+VL+EV+
Sbjct: 201 VKGTLGYIDPEYFIKGRL---TEKSDVYSFGVVLFEVL 235

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 114 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 173 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 226
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 227 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 114 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 173 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 226
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 227 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 114 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 173 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 226
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 227 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 27/166 (16%)
Query: 35  GMIHLHDSEI--ISHGNLRSSNCLID--------SRWVLQIADFGLHAFKAGQDETGQER 84
           GM +LHD  I  I H +L+SSN LI         S  +L+I DFGL        E  +  
Sbjct: 117 GMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL------AREWHRTT 170
Query: 85  KLRRRKLYK--APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDE-EIIT 141
           K+     Y   APE++R     +G+   DV+S+G++L+E++  + P+   R  D   +  
Sbjct: 171 KMSAAGAYAWMAPEVIRASMFSKGS---DVWSYGVLLWELLTGEVPF---RGIDGLAVAY 224
Query: 142 SVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL 187
            V       P  S+  C       M  CW  DP  RP    +  +L
Sbjct: 225 GVAMNKLALPIPST--CPEPFAKLMEDCWNPDPHSRPSFTNILDQL 268

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 115 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGA 173
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 174 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 227
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 228 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 270

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 112 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGA 170
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
               K + APE L      + + K DV++FG++L+E I   G   +  +   ++   + +
Sbjct: 171 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWE-IATYGMSPYPGIDPSQVYELLEK 225
Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 226 DYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 267

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + + T  S  M +L     I H +L + NCL+    ++++ADFGL     G   T     
Sbjct: 116 LYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGA 174
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
               K + APE L      + + K DV++FG++L+E+      P+  + ++  ++   + 
Sbjct: 175 KFPIK-WTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLE 228
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 229 KDYRMERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 271

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 30/176 (17%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +LH    I H NL + N L+D+  +++I DFGL  A   G +             + 
Sbjct: 129 GMAYLHSQHYI-HRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWY 187
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI----GRQGP---------WGHLRMTDEEII 140
           APE L++      +   DV+SFG+ LYE++      Q P             +MT   + 
Sbjct: 188 APECLKEYKFYYAS---DVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLT 244
Query: 141 TSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPD-------LRFVHHKLK 188
             + +G  L RPD     C   +   M+ CWE +   RP        L+ VH K +
Sbjct: 245 ELLERGERLPRPDK----CPCEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYR 296

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 30/176 (17%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +LH    I H NL + N L+D+  +++I DFGL  A   G +             + 
Sbjct: 129 GMAYLHAQHYI-HRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWY 187
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI----GRQGP---------WGHLRMTDEEII 140
           APE L++      +   DV+SFG+ LYE++      Q P             +MT   + 
Sbjct: 188 APECLKEYKFYYAS---DVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLT 244
Query: 141 TSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPD-------LRFVHHKLK 188
             + +G  L RPD     C   +   M+ CWE +   RP        L+ VH K +
Sbjct: 245 ELLERGERLPRPDK----CPCEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYR 296

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 161 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 216
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++AG    G    L  +  +  PE   +      T K D +S
Sbjct: 217 PGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 271
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 272 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 327
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 328 EDRPNFAIILERIE 341

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 138 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 193
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++AG    G    L  +  +  PE   +      T K D +S
Sbjct: 194 PGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 248
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 249 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 304
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 305 EDRPNFAIILERIE 318

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 32  ASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
           A+ G+  LH++  I H +++S+N L+D  +  +I+DFGL        +     ++     
Sbjct: 133 AANGINFLHENHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTA 191
Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI 123
           Y APE LR    P    K D+YSFG+VL E+I
Sbjct: 192 YXAPEALRGEITP----KSDIYSFGVVLLEII 219

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +LH    I H  L + N L+D+  +++I DFGL  A   G +             + 
Sbjct: 124 GMAYLHAQHYI-HRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWY 182
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI----GRQGPW-------GHL--RMTDEEII 140
           APE L++      +   DV+SFG+ LYE++      Q P        GH   +MT   + 
Sbjct: 183 APECLKECKFYYAS---DVWSFGVTLYELLTYCDSNQSPHTKFTELIGHTQGQMTVLRLT 239
Query: 141 TSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             + +G  L RPD     C   I   M+ CWE +   RP  +
Sbjct: 240 ELLERGERLPRPDR----CPCEIYHLMKNCWETEASFRPTFQ 277

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 30/176 (17%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +LH    I H +L + N L+D+  +++I DFGL  A   G +             + 
Sbjct: 146 GMAYLHAQHYI-HRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDSPVFWY 204
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI----GRQGP---------WGHLRMTDEEII 140
           APE L++      +   DV+SFG+ LYE++      Q P             +MT   + 
Sbjct: 205 APECLKEYKFYYAS---DVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLT 261
Query: 141 TSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPD-------LRFVHHKLK 188
             + +G  L RPD     C   +   M+ CWE +   RP        L+ VH K +
Sbjct: 262 ELLERGERLPRPDK----CPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQ 313

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +LH    I H  L + N L+D+  +++I DFGL  A   G +             + 
Sbjct: 123 GMAYLHAQHYI-HRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWY 181
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI----GRQGPW-------GHL--RMTDEEII 140
           APE L++      +   DV+SFG+ LYE++      Q P        GH   +MT   + 
Sbjct: 182 APECLKECKFYYAS---DVWSFGVTLYELLTYCDSNQSPHTKFTELIGHTQGQMTVLRLT 238
Query: 141 TSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             + +G  L RPD     C   I   M+ CWE +   RP  +
Sbjct: 239 ELLERGERLPRPDR----CPCEIYHLMKNCWETEASFRPTFQ 276

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 153 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTN 211
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 212 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 266
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 267 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 300

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           + +   A+ G+ +LH   II H +++S N L+D  +V +I DFG+        +T     
Sbjct: 142 LEICIGAARGLHYLHTRAII-HRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXV 200
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI 123
           ++    Y  PE   +  L   T+K DVYSFG+VL+EV+
Sbjct: 201 VKGTLGYIDPEYFIKGRL---TEKSDVYSFGVVLFEVL 235

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 18  PFNIPIGSISVNTTASVGMIHLHDSE--IISHGNLRSSNCL-IDSRWVLQIADFGLHAFK 74
           P+     ++S     S G+ +LH  +   + H +L+  N L +    VL+I DFG     
Sbjct: 97  PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFG----- 151
Query: 75  AGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM 134
              D        +    + APE+    +    ++K DV+S+G++L+EVI R+ P+  +  
Sbjct: 152 TACDIQTHMTNNKGSAAWMAPEVFEGSNY---SEKCDVFSWGIILWEVITRRKPFDEIGG 208
Query: 135 TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
               I+ +V  G+  RP     +    I + M  CW +DP  RP +
Sbjct: 209 PAFRIMWAVHNGT--RPPLIK-NLPKPIESLMTRCWSKDPSQRPSM 251

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 194 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 252
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 253 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 307
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 308 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 341

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 149 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 207
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 208 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 262
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 263 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 296

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 18  PFNIPIGSISVNTTASVGMIHLHDSE--IISHGNLRSSNCL-IDSRWVLQIADFGLHAFK 74
           P+     ++S     S G+ +LH  +   + H +L+  N L +    VL+I DFG     
Sbjct: 98  PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFG----- 152
Query: 75  AGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM 134
              D        +    + APE+    +    ++K DV+S+G++L+EVI R+ P+  +  
Sbjct: 153 TACDIQTHMTNNKGSAAWMAPEVFEGSNY---SEKCDVFSWGIILWEVITRRKPFDEIGG 209
Query: 135 TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
               I+ +V  G+  RP     +    I + M  CW +DP  RP + 
Sbjct: 210 PAFRIMWAVHNGT--RPPLIK-NLPKPIESLMTRCWSKDPSQRPSME 253

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 147 VSCTYQLARGMEYLASQKCI-HRDLTARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 205
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 206 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 260
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 261 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 294

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 114 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQT 172
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSV 143
             +    + APE +   +  + + K DV+SFG++++E     Q P  +  M   E+   +
Sbjct: 173 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQKP--YRGMKGSEVTAML 227
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 228 EKGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 269

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 18  PFNIPIGSI-SVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG 76
           P +IP+ ++       ++GM +L +   + H +L + NC++     + +ADFGL      
Sbjct: 141 PKHIPLQTLLKFMVDIALGMEYLSNRNFL-HRDLAARNCMLRDDMTVCVADFGLSKKIYS 199
Query: 77  QDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD 136
            D   Q R  +    + A E L        T K DV++FG+ ++E+  R G   +  + +
Sbjct: 200 GDYYRQGRIAKMPVKWIAIESLADRVY---TSKSDVWAFGVTMWEIATR-GMTPYPGVQN 255
Query: 137 EEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            E+   +  G  L+ P+    DC   +   M +CW  DP  RP    +  +L+++
Sbjct: 256 HEMYDYLLHGHRLKQPE----DCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL 306

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 19/118 (16%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVL---QIADFGLHAFKAGQDETGQERKLRRR-- 89
           G+ +LH   I+ H +++  N L++++  L   +I DFGL +F        ++ KLR R  
Sbjct: 158 GICYLHKHNIV-HRDIKPENILLENKNSLLNIKIVDFGLSSF------FSKDYKLRDRLG 210
Query: 90  -KLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG 146
              Y APE+L++ +     +K DV+S G+++Y ++    P+G     D++II  V +G
Sbjct: 211 TAYYIAPEVLKKKY----NEKCDVWSCGVIMYILLCGYPPFGG--QNDQDIIKKVEKG 262

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 152 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 210
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 211 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 265
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 266 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 299

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 206 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 264
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 265 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 319
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 320 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 353

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 130 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 188
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSV 143
             +    + APE +   +  + + K DV+SFG++++E     Q P+  ++ +  E+   +
Sbjct: 189 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAML 243
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 244 EKGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 285

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 130 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 188
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSV 143
             +    + APE +   +  + + K DV+SFG++++E     Q P+  ++ +  E+   +
Sbjct: 189 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAML 243
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 244 EKGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 285

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 114 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 172
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSV 143
             +    + APE +   +  + + K DV+SFG++++E     Q P  +  M   E+   +
Sbjct: 173 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQKP--YRGMKGSEVTAML 227
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 228 EKGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 269

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSXQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 146 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 204
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 205 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 259
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 260 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 293

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 108 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 166
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSV 143
             +    + APE +   +  + + K DV+SFG++++E     Q P  +  M   E+   +
Sbjct: 167 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQKP--YRGMKGSEVTAML 221
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 222 EKGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 263

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 120 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 178
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSV 143
             +    + APE +   +  + + K DV+SFG++++E     Q P  +  M   E+   +
Sbjct: 179 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQKP--YRGMKGSEVTAML 233
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 234 EKGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 275

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 196 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 239
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 240 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 297
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 298 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 341

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 128 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 186
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT 144
             +    + APE +   +  + + K DV+SFG++++E     G   +  M   E+   + 
Sbjct: 187 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFS-YGQKPYRGMKGSEVTAMLE 242
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 243 KGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 283

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 110 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 168
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSV 143
             +    + APE +   +  + + K DV+SFG++++E     Q P  +  M   E+   +
Sbjct: 169 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQKP--YRGMKGSEVTAML 223
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 224 EKGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 265

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMRIADFGLARDINNIDYYKKTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 145 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 203
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 204 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 258
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 259 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 292

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 153 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 211
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 212 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 266
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 267 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 300

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 142 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 185
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 186 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 243
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 244 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 287

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 142 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 200
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 201 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 255
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 256 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 289

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 153 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 211
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 212 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 266
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 267 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 300

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 142 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 185
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 186 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 243
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 244 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 287

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 201 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 244
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 245 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 302
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 303 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 346

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 203 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 246
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 247 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 304
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 305 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 348

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 138 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 196
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 197 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 251
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 252 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 285

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 472 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 530
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT 144
             +    + APE +   +  + + K DV+SFG++++E     G   +  M   E+   + 
Sbjct: 531 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSY-GQKPYRGMKGSEVTAMLE 586
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 587 KGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 627

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D   +   
Sbjct: 153 VSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 211
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++L+E+    G P+  + +  EE+   + 
Sbjct: 212 GRLPVKWMAPEALFDRIY---THQSDVWSFGVLLWEIFTLGGSPYPGVPV--EELFKLLK 266
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  S +C   +   MR CW   P  RP  +
Sbjct: 267 EGH--RMDKPS-NCTNELYMMMRDCWHAVPSQRPTFK 300

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 194 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 237
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 238 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 295
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 296 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 339

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           +S     + GM +L   + I H +L + N L+    V++IADFGL       D       
Sbjct: 160 VSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKNTTN 218
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + APE L        T + DV+SFG++++E+    G P+  + +  EE+   + 
Sbjct: 219 GRLPVKWMAPEALFDRVY---THQSDVWSFGVLMWEIFTLGGSPYPGIPV--EELFKLLK 273
Query: 145 QGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +G   R D  + +C   +   MR CW   P  RP  +
Sbjct: 274 EGH--RMDKPA-NCTNELYMMMRDCWHAVPSQRPTFK 307

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 11/165 (6%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQER 84
           I +    S+GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    + 
Sbjct: 473 IELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT 531
Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSV 143
             +    + APE +   +  + + K DV+SFG++++E     Q P+    M   E+   +
Sbjct: 532 HGKWPVKWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQKPY--RGMKGSEVTAML 586
Query: 144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
            +G  +        C   +   M  CW  D E RP    V  +L+
Sbjct: 587 EKGERM---GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLR 628

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 151 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 194
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 195 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 252
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 253 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 296

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 153 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 196
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 197 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 254
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 255 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 298

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 188 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 231
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 232 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 289
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 290 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 333

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 151 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL--------------- 194
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 195 --ARDIYKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 252
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 253 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 296

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 135 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 190
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 191 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 245
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 246 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 301
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 302 EDRPNFAIILERIE 315

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 12/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           IS     S GM +L + +++ H +L + N L+     ++I+DFGL      +D   +  +
Sbjct: 153 ISFAWQISQGMQYLAEMKLV-HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQ 211
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + A E L   H+   T + DV+SFG++L+E++   G P+  +    E +   + 
Sbjct: 212 GRIPVKWMAIESLFD-HI--YTTQSDVWSFGVLLWEIVTLGGNPYPGI--PPERLFNLLK 266
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            G  + RPD    +C+  +   M  CW+++P+ RP    +   L++M
Sbjct: 267 TGHRMERPD----NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 135 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 190
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 191 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 245
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 246 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 301
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 302 EDRPNFAIILERIE 315

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 135 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 190
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 191 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 245
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 246 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 301
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 302 EDRPNFAIILERIE 315

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 121 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 176
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 177 PGPGRVAKIGDFGMAQDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 231
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 232 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 287
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 288 EDRPNFAIILERIE 301

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 127 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 182
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 183 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 237
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 238 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 293
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 294 EDRPNFAIILERIE 307

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 147 ICYSFQVAKGMEFLASRKXI-HRDLAARNILLSEKNVVKICDFGL--------------- 190
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 191 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 248
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 249 GVKI-DEEFCRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 292

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 121 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 176
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 177 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 231
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 232 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 287
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 288 EDRPNFAIILERIE 301

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 137 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 192
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 193 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 247
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 248 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 303
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 304 EDRPNFAIILERIE 317

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 147 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 202
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 203 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 257
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 258 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 313
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 314 EDRPNFAIILERIE 327

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 12/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           IS     S GM +L + +++ H +L + N L+     ++I+DFGL      +D   +  +
Sbjct: 153 ISFAWQISQGMQYLAEMKLV-HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQ 211
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + A E L   H+   T + DV+SFG++L+E++   G P+  +    E +   + 
Sbjct: 212 GRIPVKWMAIESLFD-HI--YTTQSDVWSFGVLLWEIVTLGGNPYPGI--PPERLFNLLK 266
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            G  + RPD    +C+  +   M  CW+++P+ RP    +   L++M
Sbjct: 267 TGHRMERPD----NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 117 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 175
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 176 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 232
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 233 KIDSAP--LALLHKILVENPSARITIPDIK 260

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 120 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 175
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 176 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 230
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 231 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 286
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 287 EDRPNFAIILERIE 300

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 120 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 175
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 176 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 230
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 231 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 286
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 287 EDRPNFAIILERIE 300

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 112 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 167
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 168 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 222
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 223 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 278
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 279 EDRPNFAIILERIE 292

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 1   MRRSVRETEAITPNPLSPFNIP-IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS 59
           ++  +RET    P P  P ++  +  + V    + G  +L ++  I H ++ + NCL+  
Sbjct: 121 LKSFLRETR---PRPSQPSSLAMLDLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTC 176
Query: 60  RW---VLQIADFGL--HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYS 114
                V +I DFG+    ++A     G    L  +  +  PE   +      T K D +S
Sbjct: 177 PGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEAFMEGIF---TSKTDTWS 231
Query: 115 FGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP 174
           FG++L+E+    G   +   +++E++  VT G  + P     +C   +   M  CW+  P
Sbjct: 232 FGVLLWEIFSL-GYMPYPSKSNQEVLEFVTSGGRMDPPK---NCPGPVYRIMTQCWQHQP 287
Query: 175 ELRPDLRFVHHKLK 188
           E RP+   +  +++
Sbjct: 288 EDRPNFAIILERIE 301

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           IS     S GM +L +  ++ H +L + N L+     ++I+DFGL      +D   +  +
Sbjct: 153 ISFAWQISQGMQYLAEMSLV-HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQ 211
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVT 144
            R    + A E L   H+   T + DV+SFG++L+E++   G P+  +    E +   + 
Sbjct: 212 GRIPVKWMAIESLFD-HI--YTTQSDVWSFGVLLWEIVTLGGNPYPGI--PPERLFNLLK 266
Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            G  + RPD    +C+  +   M  CW+++P+ RP    +   L++M
Sbjct: 267 TGHRMERPD----NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL               
Sbjct: 147 IXYSFQVAKGMEFLASRKXI-HRDLAARNILLSEKNVVKIXDFGL--------------- 190
Query: 86  LRRRKLYKAPELLRQ--PHLPRG------------TQKGDVYSFGLVLYEVIGR-QGPWG 130
              R +YK P+ +R+    LP              T + DV+SFG++L+E+      P+ 
Sbjct: 191 --ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 248
Query: 131 HLRMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +++ DEE    + +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 249 GVKI-DEEFXRRLKEGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 292

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL        +  ++  
Sbjct: 142 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD 200
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
            R    + APE +        T + DV+SFG++L+E+      P+  +++ DEE    + 
Sbjct: 201 ARLPLKWMAPETIFDRVY---TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLK 256
Query: 145 QGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 257 EGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 287

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL        +  ++  
Sbjct: 142 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD 200
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
            R    + APE +        T + DV+SFG++L+E+      P+  +++ DEE    + 
Sbjct: 201 ARLPLKWMAPETIFDRVY---TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLK 256
Query: 145 QGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 257 EGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 287

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL        +  ++  
Sbjct: 151 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD 209
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
            R    + APE +        T + DV+SFG++L+E+      P+  +++ DEE    + 
Sbjct: 210 ARLPLKWMAPETIFDRVY---TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLK 265
Query: 145 QGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 266 EGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 296

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL        +  ++  
Sbjct: 151 ICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD 209
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
            R    + APE +        T + DV+SFG++L+E+      P+  +++ DEE    + 
Sbjct: 210 ARLPLKWMAPETIFDRVY---TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLK 265
Query: 145 QGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 266 EGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 296

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 19  FNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD 78
           F++ + S+ +        +   +S+   H ++ + N L+ S   +++ DFGL  +     
Sbjct: 106 FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM---- 161
Query: 79  ETGQERKLRRRKL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT 135
           E     K  + KL   + APE +   +  R T   DV+ FG+ ++E++   G      + 
Sbjct: 162 EDSTXXKASKGKLPIKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVK 217
Query: 136 DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
           + ++I  +  G  L       +C P++ + M  CW  DP  RP  RF   K
Sbjct: 218 NNDVIGRIENGERL---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 263

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 26  ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           I  +   + GM  L   + I H +L + N L+  + V++I DFGL        +  ++  
Sbjct: 151 IXYSFQVAKGMEFLASRKXI-HRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD 209
Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVT 144
            R    + APE +        T + DV+SFG++L+E+      P+  +++ DEE    + 
Sbjct: 210 ARLPLKWMAPETIFDRVY---TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLK 265
Query: 145 QGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +G+ +R PD ++    P +   M  CW  +P  RP
Sbjct: 266 EGTRMRAPDYTT----PEMYQTMLDCWHGEPSQRP 296

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 23  IGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDET 80
           +G++S      + GM +L     I H +L + N L+ +R +++I DFGL  A     D  
Sbjct: 120 LGTLSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHX 178
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEI 139
             +   +    + APE L+       +   D + FG+ L+E+    Q PW  + +   +I
Sbjct: 179 VMQEHRKVPFAWCAPESLKTRTF---SHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQI 233
Query: 140 ITSV-TQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +  +  +G  L RP+    DC   I   M  CW   PE RP
Sbjct: 234 LHKIDKEGERLPRPE----DCPQDIYNVMVQCWAHKPEDRP 270

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 34  VGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK 93
            G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y 
Sbjct: 115 AGVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYV 173
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           APELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P  
Sbjct: 174 APELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-W 230
Query: 154 SSLDCAPSIIACMRTCWEEDPELR---PDLRFVHHKLKEMNAGLK 195
             +D AP  +A +     E+P  R   PD++      K +  G K
Sbjct: 231 KKIDSAP--LALLHKILVENPSARITIPDIKKDRWYNKPLKKGAK 273

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 23  IGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDET 80
           +G++S      + GM +L     I H +L + N L+ +R +++I DFGL  A     D  
Sbjct: 110 LGTLSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHX 168
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEI 139
             +   +    + APE L+       +   D + FG+ L+E+    Q PW  + +   +I
Sbjct: 169 VMQEHRKVPFAWCAPESLKTRTF---SHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQI 223
Query: 140 ITSV-TQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +  +  +G  L RP+    DC   I   M  CW   PE RP
Sbjct: 224 LHKIDKEGERLPRPE----DCPQDIYNVMVQCWAHKPEDRP 260

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 115 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 173
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 174 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 230
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 231 KIDSAP--LALLHKILVENPSARITIPDIK 258

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 117 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 176 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 232
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 233 KIDSAP--LALLHKILVENPSARITIPDIK 260

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 117 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 176 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 232
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 233 KIDSAP--LALLHKILVENPSARITIPDIK 260

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 117 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 176 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 232
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 233 KIDSAP--LALLHKILVENPSARITIPDIK 260

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 19  FNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD 78
           F++ + S+ +        +   +S+   H ++ + N L+ S   +++ DFGL  +     
Sbjct: 486 FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM---- 541
Query: 79  ETGQERKLRRRKL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT 135
           E     K  + KL   + APE +   +  R T   DV+ FG+ ++E++   G      + 
Sbjct: 542 EDSTYYKASKGKLPIKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVK 597
Query: 136 DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
           + ++I  +  G  L       +C P++ + M  CW  DP  RP  RF   K
Sbjct: 598 NNDVIGRIENGERL---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 643

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 34  VGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK 93
            G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y 
Sbjct: 116 AGVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYV 174
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           APELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P  
Sbjct: 175 APELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-W 231
Query: 154 SSLDCAPSIIACMRTCWEEDPELR---PDLR 181
             +D AP  +A +     E+P  R   PD++
Sbjct: 232 KKIDSAP--LALLHKILVENPSARITIPDIK 260

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 23  IGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDET 80
           +G++S      + GM +L     I H +L + N L+ +R +++I DFGL  A     D  
Sbjct: 110 LGTLSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY 168
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEI 139
             +   +    + APE L+       +   D + FG+ L+E+    Q PW  + +   +I
Sbjct: 169 VMQEHRKVPFAWCAPESLKTRTF---SHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQI 223
Query: 140 ITSV-TQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +  +  +G  L RP+    DC   I   M  CW   PE RP
Sbjct: 224 LHKIDKEGERLPRPE----DCPQDIYNVMVQCWAHKPEDRP 260

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 23  IGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDET 80
           +G++S      + GM +L     I H +L + N L+ +R +++I DFGL  A     D  
Sbjct: 114 LGTLSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY 172
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEI 139
             +   +    + APE L+       +   D + FG+ L+E+    Q PW  + +   +I
Sbjct: 173 VMQEHRKVPFAWCAPESLKTRTF---SHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQI 227
Query: 140 ITSV-TQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +  +  +G  L RP+    DC   I   M  CW   PE RP
Sbjct: 228 LHKIDKEGERLPRPE----DCPQDIYNVMVQCWAHKPEDRP 264

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 23  IGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDET 80
           +G++S      + GM +L     I H +L + N L+ +R +++I DFGL  A     D  
Sbjct: 114 LGTLSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY 172
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEI 139
             +   +    + APE L+       +   D + FG+ L+E+    Q PW  + +   +I
Sbjct: 173 VMQEHRKVPFAWCAPESLKTRTF---SHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQI 227
Query: 140 ITSV-TQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +  +  +G  L RP+    DC   I   M  CW   PE RP
Sbjct: 228 LHKIDKEGERLPRPE----DCPQDIYNVMVQCWAHKPEDRP 264

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 116 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 175 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 231
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 232 KIDSAP--LALLHKILVENPSARITIPDIK 259

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 23  IGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDET 80
           +G++S      + GM +L     I H +L + N L+ +R +++I DFGL  A     D  
Sbjct: 120 LGTLSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY 178
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEI 139
             +   +    + APE L+       +   D + FG+ L+E+    Q PW  + +   +I
Sbjct: 179 VMQEHRKVPFAWCAPESLKTRTF---SHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQI 233
Query: 140 ITSV-TQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +  +  +G  L RP+    DC   I   M  CW   PE RP
Sbjct: 234 LHKIDKEGERLPRPE----DCPQDIYNVMVQCWAHKPEDRP 270

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 23  IGSIS-VNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDET 80
           +G++S      + GM +L     I H +L + N L+ +R +++I DFGL  A     D  
Sbjct: 110 LGTLSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY 168
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEI 139
             +   +    + APE L+       +   D + FG+ L+E+    Q PW  + +   +I
Sbjct: 169 VMQEHRKVPFAWCAPESLKTRTF---SHASDTWMFGVTLWEMFTYGQEPW--IGLNGSQI 223
Query: 140 ITSV-TQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +  +  +G  L RP+    DC   I   M  CW   PE RP
Sbjct: 224 LHKIDKEGERLPRPE----DCPQDIYNVMVQCWAHKPEDRP 260

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S  + +L     + H ++ + N L+ S   +++ DFGL  +     E     K  + KL 
Sbjct: 149 STALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYM----EDSTYYKASKGKLP 203
Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE +   +  R T   DV+ FG+ ++E++   G      + + ++I  +  G  L
Sbjct: 204 IKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVKNNDVIGRIENGERL 259
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
                  +C P++ + M  CW  DP  RP  RF   K
Sbjct: 260 ---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 291

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 117 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 176 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 232
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 233 KIDSAP--LALLHKILVENPSARITIPDIK 260

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 117 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 176 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 232
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 233 KIDSAP--LALLHKILVENPSARITIPDIK 260

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I +H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 117 GVVYLHGIGI-THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL++       +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 176 PELLKRREF--HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WK 232
Query: 155 SLDCAPSIIACMRTCWEEDPELR---PDLR 181
            +D AP  +A +     E+P  R   PD++
Sbjct: 233 KIDSAP--LALLHKILVENPSARITIPDIK 260

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S  + +L     + H ++ + N L+ S   +++ DFGL  +     E     K  + KL 
Sbjct: 126 STALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYM----EDSTYYKASKGKLP 180
Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE +   +  R T   DV+ FG+ ++E++   G      + + ++I  +  G  L
Sbjct: 181 IKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVKNNDVIGRIENGERL 236
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
                  +C P++ + M  CW  DP  RP  RF   K
Sbjct: 237 ---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 268

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 27  SVNTTASV--GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQE 83
           ++  TA +  G+ HLH   II + +L+  N L+D    ++I+D GL    KAGQ +T   
Sbjct: 291 AIFYTAQIVSGLEHLHQRNII-YRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT--- 346
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW---GHLRMTDEEII 140
           +       + APELL            D ++ G+ LYE+I  +GP+   G  ++ ++E+ 
Sbjct: 347 KGYAGTPGFMAPELLLGEEYDFSV---DYFALGVTLYEMIAARGPFRARGE-KVENKELK 402
Query: 141 TSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             V + +   PD  S    P+         ++DPE R   R
Sbjct: 403 QRVLEQAVTYPDKFS----PASKDFCEALLQKDPEKRLGFR 439

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 27  SVNTTASV--GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQE 83
           ++  TA +  G+ HLH   II + +L+  N L+D    ++I+D GL    KAGQ +T   
Sbjct: 291 AIFYTAQIVSGLEHLHQRNII-YRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT--- 346
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW---GHLRMTDEEII 140
           +       + APELL            D ++ G+ LYE+I  +GP+   G  ++ ++E+ 
Sbjct: 347 KGYAGTPGFMAPELLLGEEYDFSV---DYFALGVTLYEMIAARGPFRARGE-KVENKELK 402
Query: 141 TSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             V + +   PD  S    P+         ++DPE R   R
Sbjct: 403 QRVLEQAVTYPDKFS----PASKDFCEALLQKDPEKRLGFR 439

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S  + +L     + H ++ + N L+ S   +++ DFGL  +     E     K  + KL 
Sbjct: 121 STALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYM----EDSTYYKASKGKLP 175
Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE +   +  R T   DV+ FG+ ++E++   G      + + ++I  +  G  L
Sbjct: 176 IKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVKNNDVIGRIENGERL 231
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
                  +C P++ + M  CW  DP  RP  RF   K
Sbjct: 232 ---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 263

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 27  SVNTTASV--GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQE 83
           ++  TA +  G+ HLH   II + +L+  N L+D    ++I+D GL    KAGQ +T   
Sbjct: 291 AIFYTAQIVSGLEHLHQRNII-YRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT--- 346
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW---GHLRMTDEEII 140
           +       + APELL            D ++ G+ LYE+I  +GP+   G  ++ ++E+ 
Sbjct: 347 KGYAGTPGFMAPELLLGEEYDFSV---DYFALGVTLYEMIAARGPFRARGE-KVENKELK 402
Query: 141 TSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             V + +   PD  S    P+         ++DPE R   R
Sbjct: 403 QRVLEQAVTYPDKFS----PASKDFCEALLQKDPEKRLGFR 439

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S  + +L     + H ++ + N L+ S   +++ DFGL  +     E     K  + KL 
Sbjct: 121 STALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYM----EDSTYYKASKGKLP 175
Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE +   +  R T   DV+ FG+ ++E++   G      + + ++I  +  G  L
Sbjct: 176 IKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVKNNDVIGRIENGERL 231
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
                  +C P++ + M  CW  DP  RP  RF   K
Sbjct: 232 ---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 263

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S  + +L     + H ++ + N L+ S   +++ DFGL  +     E     K  + KL 
Sbjct: 123 STALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYM----EDSTYYKASKGKLP 177
Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE +   +  R T   DV+ FG+ ++E++   G      + + ++I  +  G  L
Sbjct: 178 IKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVKNNDVIGRIENGERL 233
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
                  +C P++ + M  CW  DP  RP  RF   K
Sbjct: 234 ---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 265

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S  + +L     + H ++ + N L+ S   +++ DFGL  +     E     K  + KL 
Sbjct: 118 STALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYM----EDSTYYKASKGKLP 172
Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE +   +  R T   DV+ FG+ ++E++   G      + + ++I  +  G  L
Sbjct: 173 IKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVKNNDVIGRIENGERL 228
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
                  +C P++ + M  CW  DP  RP  RF   K
Sbjct: 229 ---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 260

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL- 91
           S  + +L     + H ++ + N L+ S   +++ DFGL  +     E     K  + KL 
Sbjct: 124 STALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYM----EDSTYYKASKGKLP 178
Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL 149
             + APE +   +  R T   DV+ FG+ ++E++   G      + + ++I  +  G  L
Sbjct: 179 IKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVKNNDVIGRIENGERL 234
Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
                  +C P++ + M  CW  DP  RP  RF   K
Sbjct: 235 ---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 266

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 24  GSISVNTTASV------GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ 77
           G +SV+T  +       G+ H HD  I+ H +++  N LIDS   L+I DFG+ A    +
Sbjct: 106 GPLSVDTAINFTNQILDGIKHAHDMRIV-HRDIKPQNILIDSNKTLKIFDFGI-AKALSE 163
Query: 78  DETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWG 130
               Q   +     Y +PE  +       T   D+YS G+VLYE++  + P+ 
Sbjct: 164 TSLTQTNHVLGTVQYFSPEQAKGEATDECT---DIYSIGIVLYEMLVGEPPFN 213

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 22  PIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDE 79
           P   + +    + GM +L    ++ H +L + N L+  +  ++I+D GL    + A   +
Sbjct: 144 PPDFVHLVAQIAAGMEYLSSHHVV-HKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 202
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDE 137
                 L  R  + APE +      + +   D++S+G+VL+EV   G Q   G+   +++
Sbjct: 203 LLGNSLLPIR--WMAPEAIM---YGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY---SNQ 254
Query: 138 EIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           +++  +     L  PD    DC   + A M  CW E P  RP  + +H +L+
Sbjct: 255 DVVEMIRNRQVLPCPD----DCPAWVYALMIECWNEFPSRRPRFKDIHSRLR 302

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 27  SVNTTASV--GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQE 83
           ++  TA +  G+ HLH   II + +L+  N L+D    ++I+D GL    KAGQ +T   
Sbjct: 291 AIFYTAQIVSGLEHLHQRNII-YRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKT--- 346
Query: 84  RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW---GHLRMTDEEII 140
           +       + APELL            D ++ G+ LYE+I  +GP+   G  ++ ++E+ 
Sbjct: 347 KGYAGTPGFMAPELLLGEEYDFSV---DYFALGVTLYEMIAARGPFRARGE-KVENKELK 402
Query: 141 TSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             V + +   PD  S    P+         ++DPE R   R
Sbjct: 403 QRVLEQAVTYPDKFS----PASKDFCEALLQKDPEKRLGFR 439

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ--DET 80
           +G I++ T  ++   HL ++  I H +++ SN L+D    +++ DFG+    +GQ  D  
Sbjct: 127 LGKITLATVKALN--HLKENLKIIHRDIKPSNILLDRSGNIKLCDFGI----SGQLVDSI 180
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQ-KGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
            + R    R  Y APE +      +G   + DV+S G+ LYE+   + P+       +++
Sbjct: 181 AKTRDAGCRP-YMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQL 239
Query: 140 ITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
              V        ++   + +PS I  +  C  +D   RP  +
Sbjct: 240 TQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYK 281

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L +  ++ H NL + N L+ S   +Q+ADFG+       D+     + +    + A
Sbjct: 145 GMYYLEEHGMV-HRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMA 203
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGL-RPD 152
              L   H  + T + DV+S+G+ ++E++     P+  LR+   E+   + +G  L +P 
Sbjct: 204 ---LESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEKGERLAQPQ 258
Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             ++D    +   M  CW  D  +RP  + + ++   M
Sbjct: 259 ICTID----VYMVMVKCWMIDENIRPTFKELANEFTRM 292

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 22  PIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL--HAFKAGQDE 79
           P   + +    + GM +L    ++ H +L + N L+  +  ++I+D GL    + A   +
Sbjct: 127 PPDFVHLVAQIAAGMEYLSSHHVV-HKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 185
Query: 80  TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
                 L  R  + APE +      + +   D++S+G+VL+EV    G   +   +++++
Sbjct: 186 LLGNSLLPIR--WMAPEAIM---YGKFSIDSDIWSYGVVLWEVFS-YGLQPYCGYSNQDV 239
Query: 140 ITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLK 188
           +  +     L  PD    DC   + A M  CW E P  RP  + +H +L+
Sbjct: 240 VEMIRNRQVLPCPD----DCPAWVYALMIECWNEFPSRRPRFKDIHSRLR 285

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L +  ++ H NL + N L+ S   +Q+ADFG+       D+     + +    + A
Sbjct: 127 GMYYLEEHGMV-HRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMA 185
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGL-RPD 152
              L   H  + T + DV+S+G+ ++E++     P+  LR+   E+   + +G  L +P 
Sbjct: 186 ---LESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEKGERLAQPQ 240
Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             ++D    +   M  CW  D  +RP  + + ++   M
Sbjct: 241 ICTID----VYMVMVKCWMIDENIRPTFKELANEFTRM 274

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 19  FNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD 78
           F++ + S+ +        +   +S+   H ++ + N L+ +   +++ DFGL  +     
Sbjct: 106 FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYM---- 161
Query: 79  ETGQERKLRRRKL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT 135
           E     K  + KL   + APE +   +  R T   DV+ FG+ ++E++   G      + 
Sbjct: 162 EDSTYYKASKGKLPIKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVK 217
Query: 136 DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
           + ++I  +  G  L       +C P++ + M  CW  DP  RP  RF   K
Sbjct: 218 NNDVIGRIENGERL---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 263

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 77/186 (41%), Gaps = 30/186 (16%)
Query: 35  GMIHLHDSEI--------ISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQERK 85
           G+ HLH +EI        I+H +L+S N L+       IAD GL   F +  +E      
Sbjct: 146 GLCHLH-TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPN 204
Query: 86  LRR-RKLYKAPELLRQPHLPRGTQK---GDVYSFGLVLYEVIGR----------QGPWGH 131
            R   K Y  PE+L +       Q     D+YSFGL+L+EV  R          Q P+  
Sbjct: 205 TRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHD 264
Query: 132 LRMTD--EEIITSVTQGSGLRPDT----SSLDCAPSIIACMRTCWEEDPELRPDLRFVHH 185
           L  +D   E +  +     LRP      SS +C   +   M  CW  +P  R     V  
Sbjct: 265 LVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKK 324
Query: 186 KLKEMN 191
            L +M+
Sbjct: 325 TLAKMS 330

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 19  FNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD 78
           F++ + S+ +        +   +S+   H ++ + N L+ +   +++ DFGL  +     
Sbjct: 486 FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYM---- 541
Query: 79  ETGQERKLRRRKL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT 135
           E     K  + KL   + APE +   +  R T   DV+ FG+ ++E++   G      + 
Sbjct: 542 EDSTYYKASKGKLPIKWMAPESI---NFRRFTSASDVWMFGVCMWEIL-MHGVKPFQGVK 597
Query: 136 DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
           + ++I  +  G  L       +C P++ + M  CW  DP  RP  RF   K
Sbjct: 598 NNDVIGRIENGERL---PMPPNCPPTLYSLMTKCWAYDPSRRP--RFTELK 643

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 35  GMIHLHDSE-IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK 93
           GM  LH  E +I    L S + +ID     +I+        A    + Q         + 
Sbjct: 123 GMAFLHTLEPLIPRHALNSRSVMIDEDMTARIS-------MADVKFSFQSPGRMYAPAWV 175
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           APE L++       +  D++SF ++L+E++ R+ P+  L  ++ EI   V    GLRP T
Sbjct: 176 APEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL--SNMEIGMKVAL-EGLRP-T 231
Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
                +P +   M+ C  EDP  RP    +   L++M
Sbjct: 232 IPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKM 268

>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound To Ldn- 193189 Length = 305

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 22  PIGSISVNTTASVGMIHLH-------DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK 74
           P  ++ +  +A+ G+ HLH           I+H + +S N L+ S     IAD GL    
Sbjct: 104 PHLALRLAVSAACGLAHLHVEIFGTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLAVMH 163
Query: 75  A-GQD--ETGQERKLRRRKLYKAPELLRQ---PHLPRGTQKGDVYSFGLVLYEVIGRQGP 128
           + G D  + G   ++  ++ Y APE+L +          +  D+++FGLVL+E+  R   
Sbjct: 164 SQGSDYLDIGNNPRVGTKR-YMAPEVLDEQIRTDCFESYKWTDIWAFGLVLWEIARRTIV 222
Query: 129 WGHLR---------------MTDEEIITSVTQGSGLRPDTSSLDCAPSIIA-CMRTCWEE 172
            G +                  D + +  V Q +   P+  + D   S +A  MR CW  
Sbjct: 223 NGIVEDYRPPFYDVVPNDPSFEDMKKVVCVDQQTPTIPNRLAADPVLSGLAQMMRECWYP 282
Query: 173 DPELR 177
           +P  R
Sbjct: 283 NPSAR 287

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G ++V    +  + +L +   + H +++ SN L+D R  +++ DFG+       D+  +
Sbjct: 126 LGKMTVAIVKA--LYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLV--DDKAK 181
Query: 83  ERKLRRRKLYKAPELLR--QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEII 140
           +R       Y APE +    P  P    + DV+S G+ L E+   Q P+ + + TD E++
Sbjct: 182 DRSA-GCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK-TDFEVL 239
Query: 141 TSVTQ 145
           T V Q
Sbjct: 240 TKVLQ 244

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YKAPELLRQPHLPR 105
           H ++   N L+ S   +++ DFGL  +   +DE   +  + R  + + +PE +   +  R
Sbjct: 132 HRDIAVRNILVASPECVKLGDFGLSRYI--EDEDYYKASVTRLPIKWMSPESI---NFRR 186
Query: 106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIA 164
            T   DV+ F + ++E++   G      + ++++I  + +G  L +PD     C P +  
Sbjct: 187 FTTASDVWMFAVCMWEILSF-GKQPFFWLENKDVIGVLEKGDRLPKPDL----CPPVLYT 241
Query: 165 CMRTCWEEDPELRP 178
            M  CW+ DP  RP
Sbjct: 242 LMTRCWDYDPSDRP 255

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YKAPELLRQPHLPR 105
           H ++   N L+ S   +++ DFGL  +   +DE   +  + R  + + +PE +   +  R
Sbjct: 148 HRDIAVRNILVASPECVKLGDFGLSRYI--EDEDYYKASVTRLPIKWMSPESI---NFRR 202
Query: 106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIA 164
            T   DV+ F + ++E++   G      + ++++I  + +G  L +PD     C P +  
Sbjct: 203 FTTASDVWMFAVCMWEILSF-GKQPFFWLENKDVIGVLEKGDRLPKPDL----CPPVLYT 257
Query: 165 CMRTCWEEDPELRP 178
            M  CW+ DP  RP
Sbjct: 258 LMTRCWDYDPSDRP 271

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 47  HGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YKAPELLRQPHLPR 105
           H ++   N L+ S   +++ DFGL  +   +DE   +  + R  + + +PE +   +  R
Sbjct: 136 HRDIAVRNILVASPECVKLGDFGLSRYI--EDEDYYKASVTRLPIKWMSPESI---NFRR 190
Query: 106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIA 164
            T   DV+ F + ++E++   G      + ++++I  + +G  L +PD     C P +  
Sbjct: 191 FTTASDVWMFAVCMWEILSF-GKQPFFWLENKDVIGVLEKGDRLPKPDL----CPPVLYT 245
Query: 165 CMRTCWEEDPELRP 178
            M  CW+ DP  RP
Sbjct: 246 LMTRCWDYDPSDRP 259

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L   + + H +L + N L++S   ++I DFGL        E    +  R   ++  
Sbjct: 126 GMDYLGSRQYV-HRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWY 184
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ--------------GPWGHLRMTDEEI 139
           APE L Q      +   DV+SFG+ L+E++                 GP  H +MT   +
Sbjct: 185 APECLMQSKFYIAS---DVWSFGVTLHELLTYCDSDSSPMALFLKMIGP-THGQMTVTRL 240
Query: 140 ITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR 177
           + ++ +G  L       +C   +   MR CWE  P  R
Sbjct: 241 VNTLKEGKRL---PCPPNCPDEVYQLMRKCWEFQPSNR 275

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L   + + H +L + N L++S   ++I DFGL        E    +  R   ++  
Sbjct: 138 GMDYLGSRQYV-HRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWY 196
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI----GRQGPWG---------HLRMTDEEII 140
           APE L Q      +   DV+SFG+ L+E++        P           H +MT   ++
Sbjct: 197 APECLMQSKFYIAS---DVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLV 253
Query: 141 TSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR 177
            ++ +G  L       +C   +   MR CWE  P  R
Sbjct: 254 NTLKEGKRL---PCPPNCPDEVYQLMRKCWEFQPSNR 287

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 30/184 (16%)
Query: 23  IGSISVNTTASVGMIHLH-------DSEIISHGNLRSSNCLIDSRWVLQIADFGL---HA 72
           +  + +  + + G+ HLH           I+H +L+S N L+       IAD GL   H+
Sbjct: 105 VSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHS 164
Query: 73  FKAGQDETGQERKLRRRKLYKAPELLR---QPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
               Q + G   ++  ++ Y APE+L    Q       ++ D+++FGLVL+EV  R    
Sbjct: 165 QSTNQLDVGNNPRVGTKR-YMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSN 223
Query: 130 GHLR---------------MTDEEIITSVTQGSGLRPDTSSLD-CAPSIIACMRTCWEED 173
           G +                  D   +  V Q     P+    D    S+   M+ CW ++
Sbjct: 224 GIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQN 283
Query: 174 PELR 177
           P  R
Sbjct: 284 PSAR 287

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 30/184 (16%)
Query: 23  IGSISVNTTASVGMIHLH-------DSEIISHGNLRSSNCLIDSRWVLQIADFGL---HA 72
           +  + +  + + G+ HLH           I+H +L+S N L+       IAD GL   H+
Sbjct: 105 VSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHS 164
Query: 73  FKAGQDETGQERKLRRRKLYKAPELLR---QPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
               Q + G   ++  ++ Y APE+L    Q       ++ D+++FGLVL+EV  R    
Sbjct: 165 QSTNQLDVGNNPRVGTKR-YMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSN 223
Query: 130 GHLR---------------MTDEEIITSVTQGSGLRPDTSSLD-CAPSIIACMRTCWEED 173
           G +                  D   +  V Q     P+    D    S+   M+ CW ++
Sbjct: 224 GIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQN 283
Query: 174 PELR 177
           P  R
Sbjct: 284 PSAR 287

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 23  IGSISVNTTASVGMIHLH-------DSEIISHGNLRSSNCLIDSRWVLQIADFGL---HA 72
           +  + +  + + G+ HLH           I+H +L+S N L+       IAD GL   H+
Sbjct: 134 VSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHS 193
Query: 73  FKAGQDETGQERKLRRRKLYKAPELLR---QPHLPRGTQKGDVYSFGLVLYEVIGR 125
               Q + G   ++  ++ Y APE+L    Q       ++ D+++FGLVL+EV  R
Sbjct: 194 QSTNQLDVGNNPRVGTKR-YMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARR 248

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H NL + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 127 GMEYLGTKRYI-HRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWY 185
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 186 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 242
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 243 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 281

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 30/193 (15%)
Query: 28  VNTTASVGMIHLHDS---------EIISHGNLRSSNCLIDSRWVLQIADFGLH-AFKAGQ 77
           +  T + G+ +LH+            ISH +++S N L+ +     IADFGL   F+AG+
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGK 185
Query: 78  DETGQERKLRRRKLYKAPELLRQP-HLPRGT-QKGDVYSFGLVLYEVIGR----QGPWG- 130
                  ++  R+ Y APE+L    +  R    + D+Y+ GLVL+E+  R     GP   
Sbjct: 186 SAGDTHGQVGTRR-YMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDE 244
Query: 131 -----------HLRMTD-EEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
                      H  + D +E++    +   LR           +   +  CW+ D E R 
Sbjct: 245 YMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARL 304
Query: 179 DLRFVHHKLKEMN 191
               V  ++ +M 
Sbjct: 305 SAGCVGERITQMQ 317

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 20/156 (12%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKA-GQDETGQERKLRRRKL-- 91
           G+ +LH +  I H ++++ N L+     +QIADFG+ AF A G D T    K+R+  +  
Sbjct: 133 GLEYLHKNGQI-HRDVKAGNILLGEDGSVQIADFGVSAFLATGGDIT--RNKVRKTFVGT 189
Query: 92  --YKAPELLRQPHLPRGTQ-KGDVYSFGLVLYEVIGRQGPWGH------LRMTDEEIITS 142
             + APE++ Q    RG   K D++SFG+   E+     P+        L +T +    S
Sbjct: 190 PCWMAPEVMEQ---VRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPS 246
Query: 143 VTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +   +G++          S    +  C ++DPE RP
Sbjct: 247 LE--TGVQDKEMLKKYGKSFRKMISLCLQKDPEKRP 280

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 16  LSPFNIPI-GSISVNTTASVGMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIAD 67
           L+ + + + G I +  + + G+ HLH   +       I+H +L+S N L+       IAD
Sbjct: 93  LNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 152
Query: 68  FGLHAFKAGQDETGQERKLRR--RKLYKAPELL----RQPHLPRGTQKGDVYSFGLVLYE 121
            GL        +T       R   K Y APE+L       H     ++ D+Y+ GLV +E
Sbjct: 153 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHF-ESFKRADIYAMGLVFWE 211
Query: 122 VIGR----------QGPWGHLRMTDEEI--ITSVTQGSGLRPDT----SSLDCAPSIIAC 165
           +  R          Q P+  L  +D  +  +  V     LRP+      S +    +   
Sbjct: 212 IARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKI 271
Query: 166 MRTCWEEDPELR 177
           MR CW  +   R
Sbjct: 272 MRECWYANGAAR 283

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 30/183 (16%)
Query: 24  GSISVNTTASVGMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIADFGLHAFKAG 76
           G I +  + + G+ HLH   +       I+H +L+S N L+       IAD GL      
Sbjct: 140 GMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDS 199
Query: 77  QDETGQERKLRR--RKLYKAPELL----RQPHLPRGTQKGDVYSFGLVLYEVIGR----- 125
             +T       R   K Y APE+L       H     ++ D+Y+ GLV +E+  R     
Sbjct: 200 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHF-ESFKRADIYAMGLVFWEIARRCSIGG 258
Query: 126 -----QGPWGHLRMTDEEI--ITSVTQGSGLRPDT----SSLDCAPSIIACMRTCWEEDP 174
                Q P+  L  +D  +  +  V     LRP+      S +    +   MR CW  + 
Sbjct: 259 IHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANG 318
Query: 175 ELR 177
             R
Sbjct: 319 AAR 321

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 16  LSPFNIPI-GSISVNTTASVGMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIAD 67
           L+ + + + G I +  + + G+ HLH   +       I+H +L+S N L+       IAD
Sbjct: 92  LNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 151
Query: 68  FGLHAFKAGQDETGQERKLRR--RKLYKAPELL----RQPHLPRGTQKGDVYSFGLVLYE 121
            GL        +T       R   K Y APE+L       H     ++ D+Y+ GLV +E
Sbjct: 152 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHF-ESFKRADIYAMGLVFWE 210
Query: 122 VIGR----------QGPWGHLRMTDEEI--ITSVTQGSGLRPDT----SSLDCAPSIIAC 165
           +  R          Q P+  L  +D  +  +  V     LRP+      S +    +   
Sbjct: 211 IARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKI 270
Query: 166 MRTCWEEDPELR 177
           MR CW  +   R
Sbjct: 271 MRECWYANGAAR 282

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 16  LSPFNIPI-GSISVNTTASVGMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIAD 67
           L+ + + + G I +  + + G+ HLH   +       I+H +L+S N L+       IAD
Sbjct: 118 LNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 177
Query: 68  FGLHAFKAGQDETGQERKLRR--RKLYKAPELL----RQPHLPRGTQKGDVYSFGLVLYE 121
            GL        +T       R   K Y APE+L       H     ++ D+Y+ GLV +E
Sbjct: 178 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHF-ESFKRADIYAMGLVFWE 236
Query: 122 VIGR----------QGPWGHLRMTDEEI--ITSVTQGSGLRPDT----SSLDCAPSIIAC 165
           +  R          Q P+  L  +D  +  +  V     LRP+      S +    +   
Sbjct: 237 IARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKI 296
Query: 166 MRTCWEEDPELR 177
           MR CW  +   R
Sbjct: 297 MRECWYANGAAR 308

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 16  LSPFNIPI-GSISVNTTASVGMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIAD 67
           L+ + + + G I +  + + G+ HLH   +       I+H +L+S N L+       IAD
Sbjct: 98  LNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 157
Query: 68  FGLHAFKAGQDETGQERKLRR--RKLYKAPELL----RQPHLPRGTQKGDVYSFGLVLYE 121
            GL        +T       R   K Y APE+L       H     ++ D+Y+ GLV +E
Sbjct: 158 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHF-ESFKRADIYAMGLVFWE 216
Query: 122 VIGR----------QGPWGHLRMTDEEI--ITSVTQGSGLRPDT----SSLDCAPSIIAC 165
           +  R          Q P+  L  +D  +  +  V     LRP+      S +    +   
Sbjct: 217 IARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKI 276
Query: 166 MRTCWEEDPELR 177
           MR CW  +   R
Sbjct: 277 MRECWYANGAAR 288

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 20/156 (12%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKA-GQDETGQERKLRRRKL-- 91
           G+ +LH +  I H ++++ N L+     +QIADFG+ AF A G D T    K+R+  +  
Sbjct: 128 GLEYLHKNGQI-HRDVKAGNILLGEDGSVQIADFGVSAFLATGGDIT--RNKVRKTFVGT 184
Query: 92  --YKAPELLRQPHLPRGTQ-KGDVYSFGLVLYEVIGRQGPWGH------LRMTDEEIITS 142
             + APE++ Q    RG   K D++SFG+   E+     P+        L +T +    S
Sbjct: 185 PCWMAPEVMEQ---VRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPS 241
Query: 143 VTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +   +G++          S    +  C ++DPE RP
Sbjct: 242 LE--TGVQDKEMLKKYGKSFRKMISLCLQKDPEKRP 275

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 16  LSPFNIPI-GSISVNTTASVGMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIAD 67
           L+ + + + G I +  + + G+ HLH   +       I+H +L+S N L+       IAD
Sbjct: 95  LNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 154
Query: 68  FGLHAFKAGQDETGQERKLRR--RKLYKAPELL----RQPHLPRGTQKGDVYSFGLVLYE 121
            GL        +T       R   K Y APE+L       H     ++ D+Y+ GLV +E
Sbjct: 155 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHF-ESFKRADIYAMGLVFWE 213
Query: 122 VIGR----------QGPWGHLRMTDEEI--ITSVTQGSGLRPDT----SSLDCAPSIIAC 165
           +  R          Q P+  L  +D  +  +  V     LRP+      S +    +   
Sbjct: 214 IARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKI 273
Query: 166 MRTCWEEDPELR 177
           MR CW  +   R
Sbjct: 274 MRECWYANGAAR 285

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 12  TPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL- 70
           T  P++P      +I V   A   +   H + II H +++ +N LI +   +++ DFG+ 
Sbjct: 109 TEGPMTPKR----AIEVIADACQALNFSHQNGII-HRDVKPANILISATNAVKVVDFGIA 163
Query: 71  HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-- 128
            A     +   Q   +     Y +PE  R   +     + DVYS G VLYEV+  + P  
Sbjct: 164 RAIADSGNSVXQTAAVIGTAQYLSPEQARGDSV---DARSDVYSLGCVLYEVLTGEPPFT 220
Query: 129 --------WGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
                   + H+R   E+ I    +  GL  D  ++    ++       ++   E+R DL
Sbjct: 221 GDSPVSVAYQHVR---EDPIPPSARHEGLSADLDAV-VLKALAKNPENRYQTAAEMRADL 276
Query: 181 RFVHH 185
             VH+
Sbjct: 277 VRVHN 281

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 157 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 215
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 216 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 272
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 273 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 311

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 24/175 (13%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  +   +    GM +L     I H +L + N L+++   ++I DFGL        E  +
Sbjct: 117 IKLLQYTSQICKGMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK 175
Query: 83  ERKLRRRKLY-KAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTD 136
            ++     ++  APE L +      +   DV+SFG+VLYE+       +  P   +RM  
Sbjct: 176 VKEPGESPIFWYAPESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIG 232
Query: 137 EE-----IITSVTQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     I+  + +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 233 NDKQGQMIVFHLIELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 283

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 132 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 190
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 191 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 247
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 248 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 286

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 131 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 189
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 190 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 246
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 247 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 285

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 24/175 (13%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  +   +    GM +L     I H +L + N L+++   ++I DFGL        E  +
Sbjct: 118 IKLLQYTSQICKGMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK 176
Query: 83  ERKLRRRKLY-KAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTD 136
            ++     ++  APE L +      +   DV+SFG+VLYE+       +  P   +RM  
Sbjct: 177 VKEPGESPIFWYAPESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIG 233
Query: 137 EE-----IITSVTQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     I+  + +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 234 NDKQGQMIVFHLIELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 284

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 129 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 187
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 188 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 244
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 245 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 283

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 126 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 184
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 185 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 241
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 242 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 280

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 125 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 183
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 184 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 240
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 241 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 279

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 116 LGKVSIAVLR--GLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 169
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y APE L+  H    + + D++S GL L E+ +GR
Sbjct: 170 ANSFVGTRSYMAPERLQGTHY---SVQSDIWSMGLSLVELAVGR 210

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 126 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 184
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 185 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 241
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 242 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 280

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 133 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 191
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 192 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 248
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 249 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 287

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 129 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 187
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 188 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 244
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 245 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 283

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 144 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 202
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 203 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 259
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 260 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 298

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 144 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWY 202
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 203 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 259
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 260 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 298

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 24/175 (13%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           I  +   +    GM +L     I H +L + N L+++   ++I DFGL        E  +
Sbjct: 112 IKLLQYTSQICKGMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK 170
Query: 83  ERKLRRRKLY-KAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTD 136
            ++     ++  APE L +      +   DV+SFG+VLYE+       +  P   +RM  
Sbjct: 171 VKEPGESPIFWYAPESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIG 227
Query: 137 EE-----IITSVTQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     I+  + +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 228 NDKQGQMIVFHLIELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 278

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ--DET 80
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ  DE 
Sbjct: 109 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDEM 162
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
             E    R   Y +PE L+  H    + + D++S GL L E+ +GR
Sbjct: 163 ANEFVGTRS--YMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGR 203

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 168 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 221
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y +PE L+  H    + + D++S GL L E+ +GR
Sbjct: 222 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGR 262

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM++L +  ++ H +L + N L+ S   ++I DFGL     G ++       +    + A
Sbjct: 129 GMMYLEERRLV-HRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMA 187
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGL-RPD 152
            E +   H  + T + DV+S+G+ ++E++   G P+  +     EI   + +G  L +P 
Sbjct: 188 LECI---HYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI--PTREIPDLLEKGERLPQPP 242
Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             ++D    +   M  CW  D + RP  +
Sbjct: 243 ICTID----VYMVMVKCWMIDADSRPKFK 267

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 33  SVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           S+G+  LH   II + +L+  N ++DS   ++IADFG+   K    +    R+      Y
Sbjct: 130 SIGLFFLHKRGII-YRDLKLDNVMLDSEGHIKIADFGM--CKEHMMDGVTTREFCGTPDY 186
Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW 129
            APE++   + P G +  D +++G++LYE++  Q P+
Sbjct: 187 IAPEIIA--YQPYG-KSVDWWAYGVLLYEMLAGQPPF 220

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 106 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 159
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y +PE L+  H    + + D++S GL L E+ +GR
Sbjct: 160 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGR 200

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 106 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 159
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y +PE L+  H    + + D++S GL L E+ +GR
Sbjct: 160 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGR 200

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 12  TPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL- 70
           T  P++P      +I V   A   +   H + II H +++ +N +I +   +++ DFG+ 
Sbjct: 109 TEGPMTPKR----AIEVIADACQALNFSHQNGII-HRDVKPANIMISATNAVKVMDFGIA 163
Query: 71  HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-- 128
            A     +   Q   +     Y +PE  R   +     + DVYS G VLYEV+  + P  
Sbjct: 164 RAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV---DARSDVYSLGCVLYEVLTGEPPFT 220
Query: 129 --------WGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
                   + H+R   E+ I    +  GL  D  ++    ++       ++   E+R DL
Sbjct: 221 GDSPVSVAYQHVR---EDPIPPSARHEGLSADLDAV-VLKALAKNPENRYQTAAEMRADL 276
Query: 181 RFVHH 185
             VH+
Sbjct: 277 VRVHN 281

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 106 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 159
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y +PE L+  H    + + D++S GL L E+ +GR
Sbjct: 160 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGR 200

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 22  PIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDET 80
           P  +I V   A   +   H + II H +++ +N +I +   +++ DFG+  A     +  
Sbjct: 115 PKRAIEVIADACQALNFSHQNGII-HRDVKPANIMISATNAVKVMDFGIARAIADSGNSV 173
Query: 81  GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP----------WG 130
            Q   +     Y +PE  R   +     + DVYS G VLYEV+  + P          + 
Sbjct: 174 TQTAAVIGTAQYLSPEQARGDSV---DARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQ 230
Query: 131 HLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH 185
           H+R   E+ I    +  GL  D  ++    ++       ++   E+R DL  VH+
Sbjct: 231 HVR---EDPIPPSARHEGLSADLDAV-VLKALAKNPENRYQTAAEMRADLVRVHN 281

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 12  TPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL- 70
           T  P++P      +I V   A   +   H + II H +++ +N +I +   +++ DFG+ 
Sbjct: 126 TEGPMTPKR----AIEVIADACQALNFSHQNGII-HRDVKPANIMISATNAVKVMDFGIA 180
Query: 71  HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-- 128
            A     +   Q   +     Y +PE  R   +     + DVYS G VLYEV+  + P  
Sbjct: 181 RAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV---DARSDVYSLGCVLYEVLTGEPPFT 237
Query: 129 --------WGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
                   + H+R   E+ I    +  GL  D  ++    ++       ++   E+R DL
Sbjct: 238 GDSPVSVAYQHVR---EDPIPPSARHEGLSADLDAV-VLKALAKNPENRYQTAAEMRADL 293
Query: 181 RFVHH 185
             VH+
Sbjct: 294 VRVHN 298

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 12  TPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL- 70
           T  P++P      +I V   A   +   H + II H +++ +N +I +   +++ DFG+ 
Sbjct: 109 TEGPMTPKR----AIEVIADACQALNFSHQNGII-HRDVKPANIMISATNAVKVMDFGIA 163
Query: 71  HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-- 128
            A     +   Q   +     Y +PE  R   +     + DVYS G VLYEV+  + P  
Sbjct: 164 RAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV---DARSDVYSLGCVLYEVLTGEPPFT 220
Query: 129 --------WGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
                   + H+R   E+ I    +  GL  D  ++    ++       ++   E+R DL
Sbjct: 221 GDSPVSVAYQHVR---EDPIPPSARHEGLSADLDAV-VLKALAKNPENRYQTAAEMRADL 276
Query: 181 RFVHH 185
             VH+
Sbjct: 277 VRVHN 281

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Query: 13  PNPLSPFNIPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH 71
           P    P + P    I++ +   +  +H H    I H +++++N L+D  +   + DFGL 
Sbjct: 122 PESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLA 181
Query: 72  AFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGH 131
                +D       +R    + APE L      + ++K DV+ +G++L E+I  Q  +  
Sbjct: 182 KLMDYKD-XHVXXAVRGXIGHIAPEYLST---GKSSEKTDVFGYGVMLLELITGQRAFDL 237
Query: 132 LRMTDEEIITSVTQGSGL 149
            R+ +++ +  +    GL
Sbjct: 238 ARLANDDDVMLLDWVKGL 255

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 133 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 186
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y +PE L+  H    + + D++S GL L E+ +GR
Sbjct: 187 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGR 227

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM++L +  ++ H +L + N L+ S   ++I DFGL     G ++       +    + A
Sbjct: 152 GMMYLEERRLV-HRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMA 210
Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGL-RPD 152
            E +   H  + T + DV+S+G+ ++E++   G P+  +     EI   + +G  L +P 
Sbjct: 211 LECI---HYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI--PTREIPDLLEKGERLPQPP 265
Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             ++D    +   M  CW  D + RP  +
Sbjct: 266 ICTID----VYMVMVKCWMIDADSRPKFK 290

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 24/163 (14%)
Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLY-K 93
           GM +L     I H +L + N L+++   ++I DFGL        E  + ++     ++  
Sbjct: 126 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWY 184
Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-----GRQGPWGHLRMTDEE-----IITSV 143
           APE L +      +   DV+SFG+VLYE+       +  P   +RM   +     I+  +
Sbjct: 185 APESLTESKFSVAS---DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 241
Query: 144 TQ-----GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     G   RPD     C   I   M  CW  +   RP  R
Sbjct: 242 IELLKNNGRLPRPDG----CPDEIYMIMTECWNNNVNQRPSFR 280

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 12  TPNPLSPFNIPIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL- 70
           T  P++P      +I V   A   +   H + II H +++ +N +I +   +++ DFG+ 
Sbjct: 109 TEGPMTPKR----AIEVIADACQALNFSHQNGII-HRDVKPANIMISATNAVKVMDFGIA 163
Query: 71  HAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-- 128
            A     +   Q   +     Y +PE  R   +     + DVYS G VLYEV+  + P  
Sbjct: 164 RAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV---DARSDVYSLGCVLYEVLTGEPPFT 220
Query: 129 --------WGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL 180
                   + H+R   E+ I    +  GL  D  ++    ++       ++   E+R DL
Sbjct: 221 GDSPVSVAYQHVR---EDPIPPSARHEGLSADLDAV-VLKALAKNPENRYQTAAEMRADL 276
Query: 181 RFVHH 185
             VH+
Sbjct: 277 VRVHN 281

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 106 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 159
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y +PE L+  H    + + D++S GL L E+ +GR
Sbjct: 160 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGR 200

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 106 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 159
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR 125
                  + Y +PE L+  H    + + D++S GL L E+ +GR
Sbjct: 160 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGR 200

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Query: 13  PNPLSPFNIPIGS-ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH 71
           P    P + P    I++ +   +  +H H    I H +++++N L+D  +   + DFGL 
Sbjct: 130 PESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLA 189
Query: 72  AFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGH 131
                +D       +R    + APE L      + ++K DV+ +G++L E+I  Q  +  
Sbjct: 190 KLMDYKD-XHVXXAVRGTIGHIAPEYLST---GKSSEKTDVFGYGVMLLELITGQRAFDL 245
Query: 132 LRMTDEEIITSVTQGSGL 149
            R+ +++ +  +    GL
Sbjct: 246 ARLANDDDVMLLDWVKGL 263

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 125 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 178
Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWG 130
                  + Y +PE L+  H    + + D++S GL L E+   + P G
Sbjct: 179 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGRYPIG 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	8e-34
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-34
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	8e-33
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-31
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-31
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-30
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-28
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-27
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-27
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-25
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-25
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-25
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	5e-25
3soc_A	322	Activin receptor type-2A; structural genomics cons	7e-24
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-21
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	5e-20
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-19
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-19
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-19
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	7e-19
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-18
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-18
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-18
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-18
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-18
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	4e-18
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-18
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	5e-18
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-18
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-18
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	9e-18
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-17
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-17
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-17
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-17
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-17
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-17
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-17
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-17
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-17
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-17
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-17
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	4e-17
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	4e-17
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	5e-17
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-17
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	7e-17
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	7e-17
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	9e-17
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-16
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-16
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-16
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-16
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-16
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-16
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-16
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-16
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-16
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	4e-16
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-16
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-16
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-16
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	5e-16
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	7e-16
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-15
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-15
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-15
3uvj_A	225	Guanylate cyclase soluble subunit alpha-3; nitric	5e-12
1azs_A	220	VC1; complex (lyase/hydrolase), hydrolase, signal	2e-11
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-11
3et6_A	190	Soluble guanylyl cyclase beta; guanylate cyclase,	8e-11
1yk9_A	204	Adenylate cyclase; beta-alpha-beta sandwich, struc	9e-11
2wz1_A	219	Guanylate cyclase soluble subunit beta-1; lyase, G	2e-10
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-10
1ab8_A	220	Adenylyl cyclase; lyase, complex (transferase-inhi	3e-10
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-10
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	8e-10
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-09
1y10_A	407	Hypothetical protein RV1264/MT1302; adenylyl cycla	1e-09
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-09
3hls_A	66	Guanylate cyclase soluble subunit beta-1; coiled-c	5e-09
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	6e-09
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-08
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-08
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-07
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-07
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-07
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	3e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	5e-07
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-06
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-06
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-06
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	4e-06
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-06
1fx2_A	235	Receptor-type adenylate cyclase gresag 4.1; CAMP,	9e-06
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-05
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-05
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-05
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	6e-05
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	6e-05
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	6e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	6e-05
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	6e-05
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	7e-05
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	8e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	9e-05
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	9e-05
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	9e-05
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-04
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	1e-04
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	2e-04
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-04
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-04
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-04
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	5e-04
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	5e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	7e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	8e-04
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	9e-04

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  127 bits (320), Expect = 9e-34
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 5/158 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q  +L    L+ A
Sbjct: 132 GMDYLHAKSII-HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMA 190

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE++R       + + DVY+FG+VLYE++  Q P+ ++    ++II  V +G  L PD S
Sbjct: 191 PEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIEMVGRG-SLSPDLS 248

Query: 155 SL--DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +  +C   +   M  C ++  + RP    +  +++E+
Sbjct: 249 KVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  125 bits (315), Expect = 8e-33
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 15/165 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK---L 91
           GM +LH   I+ H +L+S N   D+   + I DFGL +         +E KLR +     
Sbjct: 142 GMGYLHAKGIL-HKDLKSKNVFYDN-GKVVITDFGLFSISGVLQAGRREDKLRIQNGWLC 199

Query: 92  YKAPELLRQPHLPRG------TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
           + APE++RQ            ++  DV++ G + YE+  R+ P+       E II  +  
Sbjct: 200 HLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKT--QPAEAIIWQM-- 255

Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           G+G++P+ S +     I   +  CW  + E RP    +   L+++
Sbjct: 256 GTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKL 300

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  120 bits (304), Expect = 2e-31
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 21/177 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM +LH   II H +L S NCL+     + +ADFGL      +    +  +  ++   K 
Sbjct: 120 GMAYLHSMNII-HRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKK 178

Query: 94  -----------APELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIIT 141
                      APE++  + +     +K DV+SFG+VL E+IGR            +   
Sbjct: 179 RYTVVGNPYWMAPEMINGRSY----DEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGL 234

Query: 142 SVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANI 198
           +V     L       +C PS       C + DPE RP    + H L+ +   L  ++
Sbjct: 235 NVRG--FLDRYCPP-NCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGHL 288

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  119 bits (300), Expect = 3e-31
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 12/157 (7%)

Query: 35  GMIHLHDSE-IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK 93
           GM  LH  E +I    L S + +ID     +I+   +                     + 
Sbjct: 123 GMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPA-------WV 175

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           APE L++       +  D++SF ++L+E++ R+ P+    +++ EI   V    GLRP  
Sbjct: 176 APEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFAD--LSNMEIGMKVALE-GLRPTI 232

Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
                +P +   M+ C  EDP  RP    +   L++M
Sbjct: 233 PP-GISPHVSKLMKICMNEDPAKRPKFDMIVPILEKM 268

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  117 bits (295), Expect = 4e-30
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 16/160 (10%)

Query: 35  GMIHLHDSE-IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK--LRRRKL 91
           GM +LH+    I H NL+S N L+D ++ +++ DFGL   KA    + +           
Sbjct: 149 GMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPE---- 204

Query: 92  YKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR 150
           + APE+LR +P      +K DVYSFG++L+E+   Q PWG+  +   +++ +V      R
Sbjct: 205 WMAPEVLRDEPS----NEKSDVYSFGVILWELATLQQPWGN--LNPAQVVAAVGFK-CKR 257

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +    +  P + A +  CW  +P  RP    +   L+ +
Sbjct: 258 LEIPR-NLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPL 296

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  112 bits (282), Expect = 3e-28
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 20/162 (12%)

Query: 35  GMIHLHDSE---IISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQ--DETGQERKLRR 88
           G+ +LH  +   +I H +L+  N L+ +   VL+I DFG          +  G       
Sbjct: 114 GVAYLHSMQPKALI-HRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAA---- 168

Query: 89  RKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG 148
              + APE+    +    ++K DV+S+G++L+EVI R+ P+  +      I+ +V    G
Sbjct: 169 ---WMAPEVFEGSNY---SEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHN--G 220

Query: 149 LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            RP     +    I + M  CW +DP  RP +  +   +  +
Sbjct: 221 TRPPLIK-NLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  108 bits (273), Expect = 2e-27
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 25/168 (14%)

Query: 35  GMIHLHDS---EIISHGNLRSSNCLID--------SRWVLQIADFGLHAFKAGQDETGQE 83
           GM +LHD     II H +L+SSN LI         S  +L+I DFGL        +    
Sbjct: 117 GMNYLHDEAIVPII-HRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAA 175

Query: 84  RKLRRRKLYKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
                   + APE++R        ++  DV+S+G++L+E++  + P+    +    +   
Sbjct: 176 GAYA----WMAPEVIRASMF----SKGSDVWSYGVLLWELLTGEVPFRG--IDGLAVAYG 225

Query: 143 VTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           V     L     S  C       M  CW  DP  RP    +  +L  +
Sbjct: 226 VAMN-KLALPIPS-TCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  108 bits (271), Expect = 5e-27
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 35  GMIHLHDSE--IISHGNLRSSNCLIDSRW-----VLQIADFGLHAFKAGQ--DETGQERK 85
           G+ ++ +    I+ H +LRS N  + S         ++ADFGL            G  + 
Sbjct: 134 GIEYMQNQNPPIV-HRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQ- 191

Query: 86  LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
                 + APE +        T+K D YSF ++LY ++  +GP+        + I  + +
Sbjct: 192 ------WMAPETIGAEEESY-TEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE 244

Query: 146 GSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             GLRP     DC P +   +  CW  DP+ RP   ++  +L E+
Sbjct: 245 E-GLRPTIPE-DCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  104 bits (262), Expect = 2e-25
 Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 30/185 (16%)

Query: 35  GMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLR 87
           G+ HLH   +       I+H +L+S N L+       IAD GL        +T       
Sbjct: 151 GLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNH 210

Query: 88  RR--KLYKAPELLRQPHLPRG---TQKGDVYSFGLVLYEVIGR----------QGPWGHL 132
           R   K Y APE+L      +     ++ D+Y+ GLV +E+  R          Q P+  L
Sbjct: 211 RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDL 270

Query: 133 ---RMTDEEIITSVTQGSGLRPD----TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH 185
                + EE+   V +   LRP+      S +    +   MR CW  +   R     +  
Sbjct: 271 VPSDPSVEEMRKVVCEQ-KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK 329

Query: 186 KLKEM 190
            L ++
Sbjct: 330 TLSQL 334

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  103 bits (260), Expect = 2e-25
 Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 30/186 (16%)

Query: 35  GMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLR 87
           G+ HLH           I+H +L+S N L+       IAD GL    +            
Sbjct: 117 GLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNP 176

Query: 88  RR--KLYKAPELLR---QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR--------- 133
           R   K Y APE+L    Q       ++ D+++FGLVL+EV  R    G +          
Sbjct: 177 RVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDV 236

Query: 134 ----MTDEEIITSVTQGSGLRP----DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH 185
                + E++   V      RP       S     S+   M+ CW ++P  R     +  
Sbjct: 237 VPNDPSFEDMRKVVCVD-QQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK 295

Query: 186 KLKEMN 191
            L +++
Sbjct: 296 TLTKID 301

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  103 bits (259), Expect = 5e-25
 Identities = 50/185 (27%), Positives = 68/185 (36%), Gaps = 30/185 (16%)

Query: 35  GMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLR 87
           G+ HLH           I+H +L+S N L+       IAD GL                 
Sbjct: 146 GLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNT 205

Query: 88  RR--KLYKAPELLRQPHLPRG---TQKGDVYSFGLVLYEVIGR----------QGPWGHL 132
           R   K Y  PE+L +             D+YSFGL+L+EV  R          Q P+  L
Sbjct: 206 RVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDL 265

Query: 133 ---RMTDEEIITSVTQGSGLRPD----TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH 185
                + E++   V     LRP      SS +C   +   M  CW  +P  R     V  
Sbjct: 266 VPSDPSYEDMREIVCIK-KLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKK 324

Query: 186 KLKEM 190
            L +M
Sbjct: 325 TLAKM 329

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  100 bits (250), Expect = 7e-24
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 36/188 (19%)

Query: 35  GMIHLHDSEI---------ISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK 85
           G+ +LH+            ISH +++S N L+ +     IADFGL A K    ++  +  
Sbjct: 133 GLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL-ALKFEAGKSAGDTH 191

Query: 86  LR---RRKLYKAPELLRQPHLPRG--TQKGDVYSFGLVLYEVIGRQGPWGHL-------- 132
            +   RR  Y APE+L      +     + D+Y+ GLVL+E+  R               
Sbjct: 192 GQVGTRR--YMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPF 249

Query: 133 ------RMTDEEIITSVTQGSGLRPD----TSSLDCAPSIIACMRTCWEEDPELRPDLRF 182
                   + E++   V      RP              +   +  CW+ D E R     
Sbjct: 250 EEEIGQHPSLEDMQEVVVHK-KKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGC 308

Query: 183 VHHKLKEM 190
           V  ++ +M
Sbjct: 309 VGERITQM 316

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 92.6 bits (230), Expect = 5e-21
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 40/195 (20%)

Query: 35  GMIHLHDSEI--------ISHGNLRSSNCLIDSRWVLQIADFGL---HAFKAGQDETGQE 83
           G+ +LH            ISH +L S N L+ +     I+DFGL              ++
Sbjct: 123 GLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEED 182

Query: 84  RKLRRR---KLYKAPELLRQ----PHLPRGTQKGDVYSFGLVLYEVIGR----------- 125
                      Y APE+L             ++ D+Y+ GL+ +E+  R           
Sbjct: 183 NAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242

Query: 126 --QGPWGHLRMTD---EEIITSVTQGSGLRPD-----TSSLDCAPSIIACMRTCWEEDPE 175
             Q  +          E++   V++    RP        +     S+   +  CW++D E
Sbjct: 243 EYQMAFQTEVGNHPTFEDMQVLVSR-EKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAE 301

Query: 176 LRPDLRFVHHKLKEM 190
            R   +    ++ E+
Sbjct: 302 ARLTAQXAEERMAEL 316

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 91.0 bits (226), Expect = 5e-20
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 17/160 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM ++     + H +LR++N L+    V ++ADFGL    +  +    Q  K   +    
Sbjct: 292 GMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT-- 348

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL-R 150
           APE          T K DV+SFG++L E+   GR    G   M + E++  V +G  +  
Sbjct: 349 APEAALYGRF---TIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYRMPC 402

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           P     +C  S+   M  CW ++PE RP   ++   L++ 
Sbjct: 403 PP----ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 438

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 90.3 bits (224), Expect = 1e-19
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 17/160 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM ++     + H +LR++N L+    V ++ADFGL    +  +    Q  K   +    
Sbjct: 375 GMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWT-- 431

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL-R 150
           APE          T K DV+SFG++L E+   GR    G   M + E++  V +G  +  
Sbjct: 432 APEAALYGRF---TIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYRMPC 485

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           P     +C  S+   M  CW ++PE RP   ++   L++ 
Sbjct: 486 PP----ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 521

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 20/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L     I H +L + NCL+  + VL+I+DFG+   +A             R++  K
Sbjct: 225 GMEYLESKCCI-HRDLAARNCLVTEKNVLKISDFGMSREEADGVYA---ASGGLRQVPVK 280

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE L      R + + DV+SFG++L+E    G   P+    +++++    V +G  L
Sbjct: 281 WTAPEALNYG---RYSSESDVWSFGILLWETFSLGAS-PYP--NLSNQQTREFVEKGGRL 334

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P+     C  ++   M  CW  +P  RP    ++ +L+ +
Sbjct: 335 PCPE----LCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSI 372

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 88.7 bits (220), Expect = 3e-19
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
            M +L     I H NL + NCL+    ++++ADFGL               K   +    
Sbjct: 330 AMEYLEKKNFI-HRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT-- 386

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL-R 150
           APE L        + K DV++FG++L+E+   G     G   +   ++   + +   + R
Sbjct: 387 APESLAYNKF---SIKSDVWAFGVLLWEIATYGMSPYPG---IDLSQVYELLEKDYRMER 440

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           P+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 441 PE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 85.4 bits (212), Expect = 7e-19
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 38/171 (22%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM++L     + H +L + NCL+ +  +++I DFG+             R +     Y+ 
Sbjct: 145 GMVYLASQHFV-HRDLATRNCLVGANLLVKIGDFGM------------SRDVYSTDYYRV 191

Query: 94  -----------APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEII 140
                       PE +      + T + DV+SFG++L+E+   G+Q PW   ++++ E+I
Sbjct: 192 GGHTMLPIRWMPPESI---MYRKFTTESDVWSFGVILWEIFTYGKQ-PWF--QLSNTEVI 245

Query: 141 TSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             +TQG  L RP      C   +   M  CW+ +P+ R +++ ++  L  +
Sbjct: 246 ECITQGRVLERPR----VCPKEVYDVMLGCWQREPQQRLNIKEIYKILHAL 292

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 21/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
            M +L     I H +L + NCL+    ++++ADFGL    +              K   K
Sbjct: 123 AMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGL----SRLMTGDTYTAHAGAKFPIK 177

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE L      + + K DV++FG++L+E+   G     G   +   ++   + +   +
Sbjct: 178 WTAPESLAYN---KFSIKSDVWAFGVLLWEIATYGMSPYPG---IDLSQVYELLEKDYRM 231

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            RP+     C   +   MR CW+ +P  RP    +H   + M
Sbjct: 232 ERPE----GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 269

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 25/162 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
            M +L  +  + H +L + N L+    V +++DFGL      +  + Q+      KL  K
Sbjct: 301 AMEYLEGNNFV-HRDLAARNVLVSEDNVAKVSDFGL----TKEASSTQDT----GKLPVK 351

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE LR+      + K DV+SFG++L+E+   GR        +  ++++  V +G  +
Sbjct: 352 WTAPEALREKKF---STKSDVWSFGILLWEIYSFGRVPYPR---IPLKDVVPRVEKGYKM 405

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             PD     C P++   M+ CW  D   RP    +  +L+ +
Sbjct: 406 DAPD----GCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHI 443

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 20/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D  ++ H +L + N L+ +   ++I DFGL A   G +E  +E      K+   
Sbjct: 129 GMNYLEDRRLV-HRDLAARNVLVKTPQHVKITDFGL-AKLLGAEE--KEYHAEGGKVPIK 184

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + A E +        T + DV+S+G+ ++E++  G + P+    +   EI + + +G  L
Sbjct: 185 WMALESI---LHRIYTHQSDVWSYGVTVWELMTFGSK-PYD--GIPASEISSILEKGERL 238

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +P      C   +   MR CW  D + RP  R +  +  +M
Sbjct: 239 PQPP----ICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKM 276

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 25/162 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
            M +L  +  + H +L + N L+    V +++DFGL      +  + Q+      KL  K
Sbjct: 129 AMEYLEGNNFV-HRDLAARNVLVSEDNVAKVSDFGL----TKEASSTQDTG----KLPVK 179

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE LR+    + + K DV+SFG++L+E+   GR        +  ++++  V +G  +
Sbjct: 180 WTAPEALREK---KFSTKSDVWSFGILLWEIYSFGRVPYPR---IPLKDVVPRVEKGYKM 233

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             PD     C P++   M+ CW  D  +RP    +  +L+ +
Sbjct: 234 DAPD----GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 271

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 83.4 bits (207), Expect = 3e-18
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 21/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM  + +   I H +LR++N L+      +IADFGL       + T +E      K   K
Sbjct: 121 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGA----KFPIK 175

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE +        T K DV+SFG++L E++  GR    G   MT+ E+I ++ +G  +
Sbjct: 176 WTAPEAINYG---TFTIKSDVWSFGILLTEIVTHGRIPYPG---MTNPEVIQNLERGYRM 229

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            RPD    +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 230 VRPD----NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 21/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM  +     I H +LR++N L+ +  V +IADFGL       + T +E      K   K
Sbjct: 296 GMAFIEQRNYI-HRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGA----KFPIK 350

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE +        T K DV+SFG++L E++  GR    G   M++ E+I ++ +G  +
Sbjct: 351 WTAPEAINFGSF---TIKSDVWSFGILLMEIVTYGRIPYPG---MSNPEVIRALERGYRM 404

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            RP+    +C   +   M  CW+  PE RP   ++   L + 
Sbjct: 405 PRPE----NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDF 442

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 83.1 bits (206), Expect = 4e-18
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 21/163 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL-Y 92
           GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++     +     K   
Sbjct: 129 GMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYY---KAQTHGKWPV 184

Query: 93  K--APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSG 148
           K  APE +   +  + + K DV+SFG++++E    G++ P+    M   E+   + +G  
Sbjct: 185 KWYAPECI---NYYKFSSKSDVWSFGVLMWEAFSYGQK-PYR--GMKGSEVTAMLEKGER 238

Query: 149 L-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +  P      C   +   M  CW  D E RP    V  +L+  
Sbjct: 239 MGCPA----GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 82.6 bits (205), Expect = 5e-18
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 21/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L ++ +I H +L + NCL+    V++++DFG+  F      T         K   K
Sbjct: 116 GMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT----KFPVK 170

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             +PE+       R + K DV+SFG++++EV   G+         ++ E++  ++ G  L
Sbjct: 171 WASPEVFSFS---RYSSKSDVWSFGVLMWEVFSEGKIPYEN---RSNSEVVEDISTGFRL 224

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +P       +  +   M  CW E PE RP    +  +L E+
Sbjct: 225 YKPR----LASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 82.7 bits (205), Expect = 5e-18
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L +   + H +L + N L+ +R   +I+DFGL   KA   +          K   K
Sbjct: 122 GMKYLEEKNFV-HRDLAARNVLLVNRHYAKISDFGLS--KALGADDSYYTARSAGKWPLK 178

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE +   +  + + + DV+S+G+ ++E +  G++ P+   +M   E++  + QG  +
Sbjct: 179 WYAPECI---NFRKFSSRSDVWSYGVTMWEALSYGQK-PYK--KMKGPEVMAFIEQGKRM 232

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P     +C P + A M  CW    E RPD   V  +++  
Sbjct: 233 ECPP----ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 82.6 bits (205), Expect = 5e-18
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 21/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM  L   + I H +L + NCL+D    ++++DFG+  +                K   K
Sbjct: 116 GMAFLESHQFI-HRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGT----KFPVK 170

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE+       + + K DV++FG++++EV   G+         T+ E++  V+QG  L
Sbjct: 171 WSAPEVFHYF---KYSSKSDVWAFGILMWEVFSLGKMPYDL---YTNSEVVLKVSQGHRL 224

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            RP       + +I   M +CW E PE RP  + +   ++ +
Sbjct: 225 YRPH----LASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPL 262

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 83.1 bits (206), Expect = 5e-18
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 18/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L + + + H +L + NC++D  + +++ADFGL A      E    ++ R  +L  K
Sbjct: 136 GMEYLAEQKFV-HRDLAARNCMLDESFTVKVADFGL-ARDILDREYYSVQQHRHARLPVK 193

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             A E L      R T K DV+SFG++L+E++  G         +   ++   + QG  L
Sbjct: 194 WTALESL---QTYRFTTKSDVWSFGVLLWELLTRGAPPYRH---IDPFDLTHFLAQGRRL 247

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +P+     C  S+   M+ CWE DP +RP  R +  +++++
Sbjct: 248 PQPE----YCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQI 285

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 82.7 bits (205), Expect = 9e-18
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 19/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L D   + H +L + N L+DS  V +++DFGL   +  +D+          K+  +
Sbjct: 163 GMRYLSDLGYV-HRDLAARNVLVDSNLVCKVSDFGLS--RVLEDDPDAAYTTTGGKIPIR 219

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE +        +   DV+SFG+V++EV+  G + P+    MT+ ++I+SV +G  L
Sbjct: 220 WTAPEAI---AFRTFSSASDVWSFGVVMWEVLAYGER-PYW--NMTNRDVISSVEEGYRL 273

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P      C  ++   M  CW +D   RP    +   L  +
Sbjct: 274 PAPM----GCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDAL 311

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 21/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
            M +L   + + H +L + NCL++ + V++++DFGL  +    + T         K   +
Sbjct: 132 AMEYLESKQFL-HRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGS----KFPVR 186

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
              PE+L      + + K D+++FG++++E+   G+         T+ E    + QG  L
Sbjct: 187 WSPPEVLMYS---KFSSKSDIWAFGVLMWEIYSLGKMPYER---FTNSETAEHIAQGLRL 240

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            RP       +  +   M +CW E  + RP  + +   + ++
Sbjct: 241 YRPH----LASEKVYTIMYSCWHEKADERPTFKILLSNILDV 278

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 24/164 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM++L     + H +L + NCL+    V++I DFG+      +D   T   R   R  L 
Sbjct: 170 GMVYLAGLHFV-HRDLATRNCLVGQGLVVKIGDFGM-----SRDIYSTDYYRVGGRTMLP 223

Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGS 147
             +  PE +      + T + DV+SFG+VL+E+   G+Q PW    +++ E I  +TQG 
Sbjct: 224 IRWMPPESI---LYRKFTTESDVWSFGVVLWEIFTYGKQ-PWYQ--LSNTEAIDCITQGR 277

Query: 148 GL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            L RP      C P + A MR CW+ +P+ R  ++ VH +L+ +
Sbjct: 278 ELERPR----ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQAL 317

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L +   + H +L + N L++S  V +++DFGL   +  +D+          K+  +
Sbjct: 159 GMKYLANMNYV-HRDLAARNILVNSNLVCKVSDFGLS--RVLEDDPEATYTTSGGKIPIR 215

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE +      + T   DV+SFG+V++EV+  G +  W    +++ E++ ++  G  L
Sbjct: 216 WTAPEAI---SYRKFTSASDVWSFGIVMWEVMTYGERPYWE---LSNHEVMKAINDGFRL 269

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P     DC  +I   M  CW+++   RP    +   L ++
Sbjct: 270 PTPM----DCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 307

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 23/164 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM  L     I H +L + N L+    + +I DFGL      +D             +L 
Sbjct: 157 GMAFLASKNCI-HRDLAARNILLTHGRITKICDFGL-----ARDIKNDSNYVVKGNARLP 210

Query: 92  YK--APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGS 147
            K  APE +        T + DV+S+G+ L+E+   G   P+  +   D +    + +G 
Sbjct: 211 VKWMAPESIFNCVY---TFESDVWSYGIFLWELFSLGSS-PYPGM-PVDSKFYKMIKEGF 265

Query: 148 GL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +  P+         +   M+TCW+ DP  RP  + +   +++ 
Sbjct: 266 RMLSPE----HAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 19/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D   + H +L + N LI+S  V +++DFGL   +  +D+       R  K+   
Sbjct: 159 GMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLG--RVLEDDPEAAYTTRGGKIPIR 215

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + +PE +      + T   DV+S+G+VL+EV+  G +  W    M+++++I +V +G  L
Sbjct: 216 WTSPEAI---AYRKFTSASDVWSYGIVLWEVMSYGERPYWE---MSNQDVIKAVDEGYRL 269

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P     DC  ++   M  CW++D   RP    +   L ++
Sbjct: 270 PPPM----DCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKL 307

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 20/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L +  ++ H NL + N L+ S   +Q+ADFG+ A     D+  ++      K    
Sbjct: 127 GMYYLEEHGMV-HRNLAARNVLLKSPSQVQVADFGV-ADLLPPDD--KQLLYSEAKTPIK 182

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + A E +   H  + T + DV+S+G+ ++E++  G + P+    +   E+   + +G  L
Sbjct: 183 WMALESI---HFGKYTHQSDVWSYGVTVWELMTFGAE-PYA--GLRLAEVPDLLEKGERL 236

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +P      C   +   M  CW  D  +RP  + + ++   M
Sbjct: 237 AQPQ----ICTIDVYMVMVKCWMIDENIRPTFKELANEFTRM 274

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 42/173 (24%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM +L    ++ H +L + N L+  +  ++I+D GL             R++     YK 
Sbjct: 140 GMEYLSSHHVV-HKDLATRNVLVYDKLNVKISDLGL------------FREVYAADYYKL 186

Query: 94  -----------APELLRQPHLPRG--TQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEE 138
                      APE +       G  +   D++S+G+VL+EV   G Q P+     ++++
Sbjct: 187 LGNSLLPIRWMAPEAIMY-----GKFSIDSDIWSYGVVLWEVFSYGLQ-PYCG--YSNQD 238

Query: 139 IITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           ++  +     L  PD    DC   + A M  CW E P  RP  + +H +L+  
Sbjct: 239 VVEMIRNRQVLPCPD----DCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 287

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 21/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
            M +L     + H ++   N L+ S   +++ DFGL  +   +D           +L   
Sbjct: 125 AMAYLESINCV-HRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVT----RLPIK 179

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + +PE +   +  R T   DV+ F + ++E++  G+Q P+    + ++++I  + +G  L
Sbjct: 180 WMSPESI---NFRRFTTASDVWMFAVCMWEILSFGKQ-PFF--WLENKDVIGVLEKGDRL 233

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +PD     C P +   M  CW+ DP  RP    +   L ++
Sbjct: 234 PKPD----LCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDV 271

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 24/164 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM +L+ ++ + H +L + NC++   + ++I DFG+      +D  ET   RK  +  L 
Sbjct: 150 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGM-----TRDIYETDYYRKGGKGLLP 203

Query: 92  YK--APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGS 147
            +  +PE L+       T   DV+SFG+VL+E+     Q P+    +++E+++  V +G 
Sbjct: 204 VRWMSPESLKDG---VFTTYSDVWSFGVVLWEIATLAEQ-PYQG--LSNEQVLRFVMEGG 257

Query: 148 GL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            L +PD    +C   +   MR CW+ +P++RP    +   +KE 
Sbjct: 258 LLDKPD----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 297

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 28/166 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM +L   + I H +L + N L+    V++IADFGL      +D       +K    +L 
Sbjct: 169 GMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGL-----ARDINNIDYYKKTTNGRLP 222

Query: 92  YK--APELLRQPHLPRG--TQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQ 145
            K  APE L          T + DV+SFG++++E+   G   P+    +  EE+   + +
Sbjct: 223 VKWMAPEALFD-----RVYTHQSDVWSFGVLMWEIFTLGGS-PYP--GIPVEELFKLLKE 274

Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           G  + +P     +C   +   MR CW   P  RP  + +   L  +
Sbjct: 275 GHRMDKPA----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 316

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 38/171 (22%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM +L     I H +L + NC++     + +ADFGL             RK+     Y+ 
Sbjct: 149 GMEYLSSRNFI-HRDLAARNCMLAEDMTVCVADFGL------------SRKIYSGDYYRQ 195

Query: 94  -----------APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEII 140
                      A E L        T   DV++FG+ ++E++  G+  P+    + + EI 
Sbjct: 196 GCASKLPVKWLALESL---ADNLYTVHSDVWAFGVTMWEIMTRGQT-PYAG--IENAEIY 249

Query: 141 TSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             +  G+ L +P     +C   +   M  CW  DP+ RP    +  +L+ +
Sbjct: 250 NYLIGGNRLKQPP----ECMEEVYDLMYQCWSADPKQRPSFTCLRMELENI 296

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 24/166 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL-Y 92
           GM +L     I H +L + N L+ +R +++I DFGL  A     D          RK+ +
Sbjct: 133 GMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHY---VMQEHRKVPF 188

Query: 93  K--APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSG 148
              APE L        +   D + FG+ L+E+   G++ PW    +   +I+  + +  G
Sbjct: 189 AWCAPESL---KTRTFSHASDTWMFGVTLWEMFTYGQE-PWI--GLNGSQILHKIDK-EG 241

Query: 149 LR---PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMN 191
            R   P+    DC   I   M  CW   PE RP    +   L E  
Sbjct: 242 ERLPRPE----DCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 283

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 82.3 bits (203), Expect = 4e-17
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 19/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L +   + H NL + N L+ +R   +I+DFGL   KA   +          K   K
Sbjct: 448 GMKYLEEKNFV-HRNLAARNVLLVNRHYAKISDFGLS--KALGADDSYYTARSAGKWPLK 504

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             APE +   +  + + + DV+S+G+ ++E +  G++ P+   +M   E++  + QG  +
Sbjct: 505 WYAPECI---NFRKFSSRSDVWSYGVTMWEALSYGQK-PYK--KMKGPEVMAFIEQGKRM 558

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P     +C P + A M  CW    E RPD   V  +++  
Sbjct: 559 ECPP----ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 80.0 bits (198), Expect = 5e-17
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 27/173 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L   + + H +L + N L++S   ++I DFGL   KA + +         R     
Sbjct: 138 GMDYLGSRQYV-HRDLAARNVLVESEHQVKIGDFGLT--KAIETDKEYYTVKDDRDSPVF 194

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLR-----------MTDEE 138
           + APE L Q    +     DV+SFG+ L+E++                       MT   
Sbjct: 195 WYAPECLMQS---KFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTR 251

Query: 139 IITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           ++ ++ +G  L  P     +C   +   MR CWE  P  R   + +    + +
Sbjct: 252 LVNTLKEGKRLPCPP----NCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 79.6 bits (197), Expect = 6e-17
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 15/159 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + +L     + H ++ + N L+ S   +++ DFGL  +          +     K   A
Sbjct: 128 ALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWM-A 185

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL-RP 151
           PE +   +  R T   DV+ FG+ ++E++  G +   G   + + ++I  +  G  L  P
Sbjct: 186 PESI---NFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENGERLPMP 239

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
                +C P++ + M  CW  DP  RP    +  +L  +
Sbjct: 240 P----NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 80.1 bits (198), Expect = 7e-17
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 20/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L D  ++ H +L + N L+ +   ++I DFGL A   G +E  +E      K+   
Sbjct: 129 GMNYLEDRRLV-HRDLAARNVLVKTPQHVKITDFGL-AKLLGAEE--KEYHAEGGKVPIK 184

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + A E +        T + DV+S+G+ ++E++  G + P+    +   EI + + +G  L
Sbjct: 185 WMALESI---LHRIYTHQSDVWSYGVTVWELMTFGSK-PYD--GIPASEISSILEKGERL 238

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +P      C   +   M  CW  D + RP  R +  +  +M
Sbjct: 239 PQPP----ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 276

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 80.9 bits (200), Expect = 7e-17
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 28/166 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM +L   + I H +L + N L+    V++IADFGL      +D       +K    +L 
Sbjct: 203 GMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGL-----ARDIHHIDYYKKTTNGRLP 256

Query: 92  YK--APELLRQPHLPRG--TQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQ 145
            K  APE L          T + DV+SFG++L+E+   G   P+    +  EE+   + +
Sbjct: 257 VKWMAPEALFD-----RIYTHQSDVWSFGVLLWEIFTLGGS-PYP--GVPVEELFKLLKE 308

Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           G  + +P     +C   +   MR CW   P  RP  + +   L  +
Sbjct: 309 GHRMDKPS----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 350

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 39/172 (22%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM  L     I H ++ + N L+ +  V +I DFGL             R +     Y  
Sbjct: 176 GMAFLASKNCI-HRDVAARNVLLTNGHVAKIGDFGL------------ARDIMNDSNYIV 222

Query: 94  -----------APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPW-GHLRMTDEEI 139
                      APE +        T + DV+S+G++L+E+   G   P+ G   + + + 
Sbjct: 223 KGNARLPVKWMAPESIFDC---VYTVQSDVWSYGILLWEIFSLGLN-PYPG--ILVNSKF 276

Query: 140 ITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              V  G  + +P         +I + M+ CW  +P  RP  + +   L+E 
Sbjct: 277 YKLVKDGYQMAQPA----FAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQ 324

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 24/164 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM +L + +++ H +L + N L+     ++I+DFGL      +D  E     K  + ++ 
Sbjct: 162 GMQYLAEMKLV-HRDLAARNILVAEGRKMKISDFGL-----SRDVYEEDSYVKRSQGRIP 215

Query: 92  YK--APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGS 147
            K  A E L        T + DV+SFG++L+E++  G   P+    +  E +   +  G 
Sbjct: 216 VKWMAIESLFDH---IYTTQSDVWSFGVLLWEIVTLGGN-PYP--GIPPERLFNLLKTGH 269

Query: 148 GL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            + RPD    +C+  +   M  CW+++P+ RP    +   L++M
Sbjct: 270 RMERPD----NCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKM 309

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 20/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L +   + H +L + NC++     + +ADFGL       D     R+ R  K+  K
Sbjct: 159 GMEYLSNRNFL-HRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYY---RQGRIAKMPVK 214

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
             A E L        T K DV++FG+ ++E+   G   P+    + + E+   +  G  L
Sbjct: 215 WIAIESLADR---VYTSKSDVWAFGVTMWEIATRGMT-PYPG--VQNHEMYDYLLHGHRL 268

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +P+    DC   +   M +CW  DP  RP    +  +L+++
Sbjct: 269 KQPE----DCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKL 306

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 21/162 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
            + +L     + H ++ + N L+ S   +++ DFGL  +           K  + KL   
Sbjct: 503 ALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY----KASKGKLPIK 557

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + APE +        T   DV+ FG+ ++E++  G +   G   + + ++I  +  G  L
Sbjct: 558 WMAPESINFRRF---TSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENGERL 611

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             P     +C P++ + M  CW  DP  RP    +  +L  +
Sbjct: 612 PMPP----NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM  L   + + H +L + NC++D ++ +++ADFGL A      E          KL   
Sbjct: 204 GMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGL-ARDMYDKEFDSVHNKTGAKLPVK 261

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + A E L+     + T K DV+SFG++L+E++  G         +   +I   + QG  L
Sbjct: 262 WMALESLQTQ---KFTTKSDVWSFGVLLWELMTRGAPPYPD---VNTFDITVYLLQGRRL 315

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +P+     C   +   M  CW    E+RP    +  ++  +
Sbjct: 316 LQPE----YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 353

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 18/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L   + + H +L + NC++D ++ +++ADFGL      ++      K    KL   
Sbjct: 140 GMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVK 197

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + A E L+     + T K DV+SFG++L+E++  G         +   +I   + QG  L
Sbjct: 198 WMALESLQTQ---KFTTKSDVWSFGVLLWELMTRGAPPYPD---VNTFDITVYLLQGRRL 251

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +P+     C   +   M  CW    E+RP    +  ++  +
Sbjct: 252 LQPE----YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 289

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 28/166 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM +L   + I H +L + N L+    V++IADFGL      +D       +K    +L 
Sbjct: 215 GMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGL-----ARDINNIDYYKKTTNGRLP 268

Query: 92  YK--APELLRQPHLPRG--TQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQ 145
            K  APE L          T + DV+SFG++++E+   G   P+    +  EE+   + +
Sbjct: 269 VKWMAPEALFD-----RVYTHQSDVWSFGVLMWEIFTLGGS-PYPG--IPVEELFKLLKE 320

Query: 146 GSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           G  + +P     +C   +   MR CW   P  RP  + +   L  +
Sbjct: 321 GHRMDKPA----NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 362

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 27/173 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +LH    I H +L + N L+D+  +++I DFGL   KA  +     R          
Sbjct: 146 GMAYLHAQHYI-HRDLAARNVLLDNDRLVKIGDFGLA--KAVPEGHEYYRVREDGDSPVF 202

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLR-----------MTDEE 138
           + APE L++    +     DV+SFG+ LYE++           +           MT   
Sbjct: 203 WYAPECLKEY---KFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLR 259

Query: 139 IITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +   + +G  L RPD     C   +   M+ CWE +   RP    +   LK +
Sbjct: 260 LTELLERGERLPRPD----KCPAEVYHLMKNCWETEASFRPTFENLIPILKTV 308

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 41/173 (23%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQ--------IADFGLHAFKAGQDETGQERKL 86
            M  L ++ +I HGN+ + N L+      +        ++D G+               +
Sbjct: 125 AMHFLEENTLI-HGNVCAKNILLIREEDRKTGNPPFIKLSDPGI------------SITV 171

Query: 87  RRRKLYK------APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEE 138
             + + +       PE +   +        D +SFG  L+E+   G + P     +  + 
Sbjct: 172 LPKDILQERIPWVPPECIE--NPKNLNLATDKWSFGTTLWEICSGGDK-PLS--ALDSQR 226

Query: 139 IITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +        L  P       A  +   +  C + +P+ RP  R +   L  +
Sbjct: 227 KLQFYEDRHQLPAP------KAAELANLINNCMDYEPDHRPSFRAIIRDLNSL 273

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 23/164 (14%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD--ETGQERKLRRRKL- 91
           GM  L   + I H +L + N L+  + V++I DFGL      +D  +     +    +L 
Sbjct: 160 GMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL-----ARDIYKDPDYVRKGDARLP 213

Query: 92  YK--APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGS 147
            K  APE +        T + DV+SFG++L+E+   G   P+  ++  DEE    + +G+
Sbjct: 214 LKWMAPETIFDR---VYTIQSDVWSFGVLLWEIFSLGAS-PYPGVK-IDEEFCRRLKEGT 268

Query: 148 GL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +  PD       P +   M  CW  +P  RP    +   L  +
Sbjct: 269 RMRAPD----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 308

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 34/177 (19%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L     I H +L + N L+++   ++I DFGL   K    +    +     +    
Sbjct: 126 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLT--KVLPQDKEFFKVKEPGESPIF 182

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-----------------GRQGPWGHLRM 134
           + APE L +    + +   DV+SFG+VLYE+                  G         M
Sbjct: 183 WYAPESLTES---KFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQ---M 236

Query: 135 TDEEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +I  +     L RPD     C   I   M  CW  +   RP  R +  ++ ++
Sbjct: 237 IVFHLIELLKNNGRLPRPD----GCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 289

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 25/163 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L   + I H +L + N L+   +V +IADFGL    +   E     K    +L  +
Sbjct: 154 GMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGL----SRGQEV--YVKKTMGRLPVR 206

Query: 94  --APELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGP-WGHLRMTDEEIITSVTQGSG 148
             A E L        T   DV+S+G++L+E++  G   P  G   MT  E+   + QG  
Sbjct: 207 WMAIESLNYS---VYTTNSDVWSYGVLLWEIVSLGGT-PYCG---MTCAELYEKLPQGYR 259

Query: 149 L-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           L +P     +C   +   MR CW E P  RP    +   L  M
Sbjct: 260 LEKPL----NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 298

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 41/173 (23%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM  L     + H +L + N L+    V++I DFGL             R +     Y  
Sbjct: 184 GMEFLEFKSCV-HRDLAARNVLVTHGKVVKICDFGL------------ARDIMSDSNYVV 230

Query: 94  -----------APELLRQPHLPRG--TQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEE 138
                      APE L +     G  T K DV+S+G++L+E+   G   P+  +   D  
Sbjct: 231 RGNARLPVKWMAPESLFE-----GIYTIKSDVWSYGILLWEIFSLGVN-PYPGI-PVDAN 283

Query: 139 IITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +  G  + +P          I   M++CW  D   RP    +   L   
Sbjct: 284 FYKLIQNGFKMDQPF----YATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQ 332

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 42/173 (24%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK- 93
           GM +L + + + H +L + NCL+    V++IADFGL             R +     YK 
Sbjct: 186 GMAYLSERKFV-HRDLATRNCLVGENMVVKIADFGL------------SRNIYSADYYKA 232

Query: 94  -----------APELLRQPHLPRG--TQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEE 138
                       PE +          T + DV+++G+VL+E+   G Q P+    M  EE
Sbjct: 233 DGNDAIPIRWMPPESIFY-----NRYTTESDVWAYGVVLWEIFSYGLQ-PYYG--MAHEE 284

Query: 139 IITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           +I  V  G+ L  P+    +C   +   MR CW + P  RP    +H  L+ M
Sbjct: 285 VIYYVRDGNILACPE----NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 333

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 27/167 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGLHAFKAGQD--ETGQERKLRRR 89
           G  +L ++  I H ++ + NCL+       V +I DFG+      +D       RK    
Sbjct: 152 GCQYLEENHFI-HRDIAARNCLLTCPGPGRVAKIGDFGM-----ARDIYRASYYRKGGCA 205

Query: 90  KL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVT 144
            L   +  PE          T K D +SFG++L+E+   G          +++E++  VT
Sbjct: 206 MLPVKWMPPEAF---MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS---KSNQEVLEFVT 259

Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            G  +  P     +C   +   M  CW+  PE RP+   +  +++  
Sbjct: 260 SGGRMDPPK----NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 302

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 77.4 bits (191), Expect = 7e-16
 Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 34/177 (19%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM +L     I H +L + N L+++   ++I DFGL   K    +    +     +    
Sbjct: 157 GMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLT--KVLPQDKEYYKVKEPGESPIF 213

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-----------------GRQGPWGHLRM 134
           + APE L      + +   DV+SFG+VLYE+                  G         M
Sbjct: 214 WYAPESL---TESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQ---M 267

Query: 135 TDEEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +I  +     L RPD     C   I   M  CW  +   RP  R +  ++ ++
Sbjct: 268 IVFHLIELLKNNGRLPRPD----GCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 320

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 31/175 (17%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL-- 91
           GM +L     + H +L + N L++S   ++IADFGL       +D           +   
Sbjct: 139 GMEYLGSRRCV-HRDLAARNILVESEAHVKIADFGLAKLLPLDKDYY---VVREPGQSPI 194

Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-------------GRQGPWGHLRMTD 136
             Y APE L        +++ DV+SFG+VLYE+               R           
Sbjct: 195 FWY-APESLSDN---IFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPAL 250

Query: 137 EEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             ++  + +G  L  P      C   +   M+ CW   P+ RP    +  +L  +
Sbjct: 251 SRLLELLEEGQRLPAPP----ACPAEVHELMKLCWAPSPQDRPSFSALGPQLDML 301

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM  L   + I H +L + N L+  + V++I DFGL A    +D      +    +L   
Sbjct: 205 GMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGL-ARDIYKDPD--YVRKGDARLPLK 260

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVTQGSGL 149
           + APE +        T + DV+SFG++L+E+   G   P+  ++  DEE    + +G+ +
Sbjct: 261 WMAPETIFDR---VYTIQSDVWSFGVLLWEIFSLGAS-PYPGVK-IDEEFCRRLKEGTRM 315

Query: 150 -RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             PD       P +   M  CW  +P  RP    +   L  +
Sbjct: 316 RAPD----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 27/167 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGLHAFKAGQD--ETGQERKLRRR 89
           G  +L ++  I H ++ + NCL+       V +I DFG+      +D    G  RK    
Sbjct: 193 GCQYLEENHFI-HRDIAARNCLLTCPGPGRVAKIGDFGM-----ARDIYRAGYYRKGGCA 246

Query: 90  KL---YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI--GRQGPWGHLRMTDEEIITSVT 144
            L   +  PE          T K D +SFG++L+E+   G   P+     +++E++  VT
Sbjct: 247 MLPVKWMPPEAF---MEGIFTSKTDTWSFGVLLWEIFSLGYM-PYPS--KSNQEVLEFVT 300

Query: 145 QGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            G  +  P     +C   +   M  CW+  PE RP+   +  +++  
Sbjct: 301 SGGRMDPPK----NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYC 343

>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens} Length = 225

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 330 RGDFVEPESFDSVTIYFSDIVGFTQLSAEST 360
           +G  V+ + F +VT+ FSDIVGFT + ++ +
Sbjct: 3   QGQVVQAKKFSNVTMLFSDIVGFTAICSQCS 33

>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A* Length = 220

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 305 LTQEKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQLSAEST 360
           +         +   +  +       +   +  +  D+V+I F+DI GFT L+++ T
Sbjct: 1   MHHHHHHAMEMKADINAKQEDMMFHK---IYIQKHDNVSILFADIEGFTSLASQCT 53

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 62.6 bits (153), Expect = 5e-11
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 25/103 (24%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET----------GQER 84
           G+ +LH   II H +++S N L+D  +V +I DFG+       D+T          G   
Sbjct: 151 GLHYLHTRAII-HRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLG--- 206

Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQ 126
                  Y  PE   +  L   T+K DVYSFG+VL+EV+  R 
Sbjct: 207 -------YIDPEYFIKGRL---TEKSDVYSFGVVLFEVLCARS 239

>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B Length = 190

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 334 VEPESFDSVTIYFSDIVGFTQLSAEST 360
              +     T+ FSDIVGFT++++ S+
Sbjct: 2   APAQEHPEATVLFSDIVGFTEIASRSS 28

>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis} Length = 204

 Score = 59.9 bits (146), Expect = 9e-11
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 334 VEPESFDSVTIYFSDIVGFTQLSAEST 360
           +  + +D  ++ F+DIVGFT+ ++ + 
Sbjct: 3   IIADKYDEASVLFADIVGFTERASSTA 29

>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B Length = 219

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 334 VEPESFDSVTIYFSDIVGFTQLSAEST 360
           V  + +D+VTI FS IVGF    ++  
Sbjct: 5   VPAKRYDNVTILFSGIVGFNAFCSKHA 31

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 21/157 (13%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLI-----DSRWVLQIADFGLHAFKAGQDETGQERKLRRR 89
           G+ HLH   I+ H +L+  N LI       +    I+DFGL      +   G+    RR 
Sbjct: 130 GLAHLHSLNIV-HRDLKPHNILISMPNAHGKIKAMISDFGL----CKKLAVGRHSFSRRS 184

Query: 90  KL-----YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQG--PWGHLRMTDEEIITS 142
            +     + APE+L +      T   D++S G V Y VI   G  P+G        I+  
Sbjct: 185 GVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISE-GSHPFGKSLQRQANILLG 243

Query: 143 VTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD 179
                 L P+      A  +I  M      DP+ RP 
Sbjct: 244 ACSLDCLHPEKHEDVIARELIEKMIA---MDPQKRPS 277

>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B* Length = 220

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 330 RGDFVEPESFDSVTIYFSDIVGFTQLSAEST 360
           + + +  +S+D V + F+ I  F +   ES 
Sbjct: 3   KNEELYHQSYDCVCVMFASIPDFKEFYTESD 33

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 18/167 (10%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL 97
           +L    ++ HG+    N  I     L + D     +K G         +     Y   E 
Sbjct: 209 NLQSKGLV-HGHFTPDNLFIMPDGRLMLGDVSA-LWKVGTRGPASSVPVT----YAPREF 262

Query: 98  LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLD 157
           L        T   + +  GL +Y V     P+G +    +      +         +   
Sbjct: 263 LNASTAT-FTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGS 321

Query: 158 CAP------SIIACMRTCWEEDPELRPDLR--FVHHKLKEMNAGLKA 196
           C P      ++I         D   R          +  ++   + +
Sbjct: 322 CTPLPDFVKTLIGRF---LNFDRRRRLLPLEAMETPEFLQLQNEISS 365

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 58.7 bits (143), Expect = 8e-10
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 26/102 (25%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET----------GQER 84
           G+  LH++  I H +++S+N L+D  +  +I+DFGL        +T              
Sbjct: 145 GINFLHENHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTA--- 200

Query: 85  KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GR 125
                  Y APE LR   +   T K D+YSFG+VL E+I G 
Sbjct: 201 -------YMAPEALRG-EI---TPKSDIYSFGVVLLEIITGL 231

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPE 96
           H     II H +L+  N  I      ++I D GL    A        + +     + APE
Sbjct: 146 HTRTPPII-HRDLKCDNIFITGPTGSVKIGDLGL----ATLKRASFAKAVIGTPEFMAPE 200

Query: 97  LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS--GLRPDTS 154
           +  + +     +  DVY+FG+ + E+   + P+   +    +I   VT G         +
Sbjct: 201 MYEEKY----DESVDVYAFGMCMLEMATSEYPYSECQNA-AQIYRRVTSGVKPASFDKVA 255

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
             +    II     C  ++ + R 
Sbjct: 256 IPEVK-EII---EGCIRQNKDERY 275

>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* Length = 407

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 297 LVQERTNQLTQ-EKKKTDALLHRMLPRSVSESLKRGDFVEPESFDSVTIYFSDIVGFTQL 355
           LV +    L    +      L  M+      + +R           VT+ F+D+VGFTQL
Sbjct: 170 LVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFTQL 229

Query: 356 SA--ESTETGRVTTRDSRRTPDL 376
                + E G +  R +    DL
Sbjct: 230 GEVVSAEELGHLAGRLAGLARDL 252

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 16/98 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-----HAFKAGQDETGQERKLRRR 89
            +  LH   ++ H +L+ SN       V+++ DFGL        +     T         
Sbjct: 176 AVEFLHSKGLM-HRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHT 234

Query: 90  K-----LYKAPELLR-QPHLPRGTQKGDVYSFGLVLYE 121
                 LY +PE +    +    + K D++S GL+L+E
Sbjct: 235 GQVGTKLYMSPEQIHGNNY----SHKVDIFSLGLILFE 268

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 31/167 (18%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK---L 91
           G+ ++H  ++I + +L+ SN  +     ++I DFGL        +   +R   R K    
Sbjct: 134 GVDYIHSKKLI-NRDLKPSNIFLVDTKQVKIGDFGL----VTSLKNDGKRT--RSKGTLR 186

Query: 92  YKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR 150
           Y +PE +  Q +     ++ D+Y+ GL+L E++              +  T +  G    
Sbjct: 187 YMSPEQISSQDY----GKEVDLYALGLILAELLHVCDT----AFETSKFFTDLRDGI--I 236

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLR------FVHHKLKEMN 191
            D         +   +       PE RP+         V  K  E N
Sbjct: 237 SDIFDKKEKTLLQKLLSK----KPEDRPNTSEILRTLTVWKKSPEKN 279

>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus} Length = 66

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 298 VQERTNQLTQEKKKTDALLHRMLPRSVSESLK 329
           +Q     L  EKKKTD LL+ +LP SV+  L+
Sbjct: 33  LQLTLRALEDEKKKTDTLLYSVLPPSVANELR 64

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 13/164 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           G+  +H      H +L+ +N L+       + D G         E  ++    +      
Sbjct: 146 GLEAIHAKGYA-HRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQR 204

Query: 92  ----YKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG 146
               Y+APEL   Q H     ++ DV+S G VLY ++  +GP+  +    + +  +V   
Sbjct: 205 CTISYRAPELFSVQSHCVID-ERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ 263

Query: 147 SGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             +            ++  M      DP  RP +  +  +L+ +
Sbjct: 264 LSIPQSPRHSSALWQLLNSM---MTVDPHQRPHIPLLLSQLEAL 304

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + H+H   ++ H +++ +N  I +  V+++ D GL   +    +T     L     Y +
Sbjct: 148 ALEHMHSRRVM-HRDIKPANVFITATGVVKLGDLGL-G-RFFSSKTTAAHSLVGTPYYMS 204

Query: 95  PELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           PE +    +      K D++S G +LYE+   Q P+   +M    +   + Q     P  
Sbjct: 205 PERIHENGY----NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD--YPPL 258

Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANI 198
            S   +  +   +  C   DPE RPD+ +V+   K M+A   +++
Sbjct: 259 PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASSL 303

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 19/146 (13%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + HLH   ++ H +++ +N  +  R   ++ DFGL   + G    G+ ++   R  Y A
Sbjct: 169 ALAHLHSQGLV-HLDVKPANIFLGPRGRCKLGDFGL-LVELGTAGAGEVQEGDPR--YMA 224

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDE--EIITSVTQGSGLRPD 152
           PELL+  +        DV+S GL + EV              +  +        +GL  +
Sbjct: 225 PELLQGSY----GTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSE 280

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRP 178
             S+     ++  +      DP+LR 
Sbjct: 281 LRSV-----LVMMLEP----DPKLRA 297

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-----HAFKAGQDETGQERKLRRR 89
            +  LH   ++ H +L+ SN       V+++ DFGL        +     T      R  
Sbjct: 130 AVEFLHSKGLM-HRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHT 188

Query: 90  K-----LYKAPELLR-QPHLPRGTQKGDVYSFGLVLYE 121
                 LY +PE +    +    + K D++S GL+L+E
Sbjct: 189 GQVGTKLYMSPEQIHGNSY----SHKVDIFSLGLILFE 222

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 25/162 (15%)

Query: 35  GMIHLHDS---EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
           G+ +LHD    +II H +++++N L+D  +   + DFGL A      +T     +R    
Sbjct: 143 GLAYLHDHCDPKII-HRDVKAANILLDEEFEAVVGDFGL-AKLMDYKDTHVTTAVRGTIG 200

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + APE L        ++K DV+ +G++L E+I  Q  +   R+ +++ +  +    GL  
Sbjct: 201 HIAPEYLSTGKS---SEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLK 257

Query: 152 DTSSLDCA-PSI--------------IACMRTCWEEDPELRP 178
           +          +              +A +  C +  P  RP
Sbjct: 258 EKKLEALVDVDLQGNYKDEEVEQLIQVALL--CTQSSPMERP 297

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL---------HAFKAGQDETGQERK 85
            + ++H   II H +L+  N  ID    ++I DFGL               Q+  G    
Sbjct: 128 ALSYIHSQGII-HRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDN 186

Query: 86  LRRRK---LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS 142
           L       +Y A E+L         +K D+YS G++ +E+I          M    I+  
Sbjct: 187 LTSAIGTAMYVATEVLDG--TGHYNEKIDMYSLGIIFFEMI--YPFSTG--MERVNILKK 240

Query: 143 VTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +   S   P     +        +R   + DP  RP
Sbjct: 241 LRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRP 276

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWV-----------LQIADFGLHAFKAGQDETGQE 83
            +  +HD EII HG+++  N ++ + ++           L + D G         +    
Sbjct: 184 MIEQVHDCEII-HGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIF 242

Query: 84  RKLRRRKLYKAPELL-RQPHLPRGTQKGDVYSFGLVLYEVI 123
                   ++  E+L  +P       + D +     +Y ++
Sbjct: 243 TAKCETSGFQCVEMLSNKPW----NYQIDYFGVAATVYCML 279

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 25/158 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK-----LRRR 89
            +  +H   I+ H +L+ +N LI    +L++ DFG+ A +   D T   +      +   
Sbjct: 120 AVHTIHQHGIV-HSDLKPANFLIVDG-MLKLIDFGI-ANQMQPDTTSVVKDSQVGTV--- 173

Query: 90  KLYKAPELLRQPHLPRGTQ--------KGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIIT 141
             Y  PE ++     R           K DV+S G +LY +   + P+  +     ++  
Sbjct: 174 -NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHA 232

Query: 142 SVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +     +  PD    D        ++ C + DP+ R 
Sbjct: 233 IIDPNHEIEFPDIPEKDL----QDVLKCCLKRDPKQRI 266

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 29/179 (16%)

Query: 35  GMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK--- 90
            + H+H     I H +L+  N L+ ++  +++ DFG     +   +     + R      
Sbjct: 148 AVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEE 207

Query: 91  -------LYKAPELLRQPHLPRG---TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEII 140
                  +Y+ PE++    L       +K D+++ G +LY +  RQ P+      ++   
Sbjct: 208 ITRNTTPMYRTPEII---DLYSNFPIGEKQDIWALGCILYLLCFRQHPF------EDGAK 258

Query: 141 TSVTQGSGLRPDTS--SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKAN 197
             +  G    P            I A ++     +PE R  +  V H+L+E+ A    N
Sbjct: 259 LRIVNGKYSIPPHDTQYTVFHSLIRAMLQ----VNPEERLSIAEVVHQLQEIAAARNVN 313

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 25/161 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK-----LRRR 89
            +  +H   I+ H +L+ +N LI    +L++ DFG+ A +   D T   +      +   
Sbjct: 139 AVHTIHQHGIV-HSDLKPANFLIVDG-MLKLIDFGI-ANQMQPDTTSVVKDSQVGTV--- 192

Query: 90  KLYKAPELLRQPHLPRGTQKG--------DVYSFGLVLYEVIGRQGPWGHLRMTDEEIIT 141
             Y  PE ++     R   K         DV+S G +LY +   + P+  +     ++  
Sbjct: 193 -NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHA 251

Query: 142 SVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
            +     +  PD    D        ++ C + DP+ R  + 
Sbjct: 252 IIDPNHEIEFPDIPEKDL----QDVLKCCLKRDPKQRISIP 288

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 19/94 (20%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           G+ +LH  +II H +++ SN L+     ++IADFG+     G D            L   
Sbjct: 149 GIEYLHYQKII-HRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDAL----------LSNT 197

Query: 92  -----YKAPELLRQPHLPRGTQKGDVYSFGLVLY 120
                + APE L +       +  DV++ G+ LY
Sbjct: 198 VGTPAFMAPESLSETRKIFSGKALDVWAMGVTLY 231

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 25/158 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERK-----LRRR 89
            +  +H   I+ H +L+ +N LI    +L++ DFG+ A +   D T   +      +   
Sbjct: 167 AVHTIHQHGIV-HSDLKPANFLIVDG-MLKLIDFGI-ANQMQPDTTSVVKDSQVGAV--- 220

Query: 90  KLYKAPELLRQPHLPRGTQKG--------DVYSFGLVLYEVIGRQGPWGHLRMTDEEIIT 141
             Y  PE ++     R   K         DV+S G +LY +   + P+  +     ++  
Sbjct: 221 -NYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHA 279

Query: 142 SVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
            +     +  PD    D        ++ C + DP+ R 
Sbjct: 280 IIDPNHEIEFPDIPEKDL----QDVLKCCLKRDPKQRI 313

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 15/92 (16%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL 97
            LH   ++ H  LR  + ++D R  + +  F     + G             + ++ PEL
Sbjct: 221 SLHHYGLV-HTYLRPVDIVLDQRGGVFLTGFEH-LVRDGARVV-----SSVSRGFEPPEL 273

Query: 98  L--------RQPHLPRGTQKGDVYSFGLVLYE 121
                     +      T   D ++ GLV+Y 
Sbjct: 274 EARRATISYHRDRRTLMTFSFDAWALGLVIYW 305

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 35/159 (22%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK---- 90
            + H+HD +I+ H +++S N  +     +Q+ DFG+             R L        
Sbjct: 137 ALKHVHDRKIL-HRDIKSQNIFLTKDGTVQLGDFGI------------ARVLNSTVELAR 183

Query: 91  ------LYKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSV 143
                  Y +PE+   +P+      K D+++ G VLYE+   +  +    M  + ++  +
Sbjct: 184 ACIGTPYYLSPEICENKPY----NNKSDIWALGCVLYELCTLKHAFEAGSM--KNLVLKI 237

Query: 144 TQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
             GS        S D    +    +     +P  RP + 
Sbjct: 238 ISGSFPPVSLHYSYDLRSLVSQLFKR----NPRDRPSVN 272

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 38/161 (23%)

Query: 35  GMIHLHD----SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK 90
            +   H        + H +L+ +N  +D +  +++ DFGL             R L    
Sbjct: 123 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA------------RILNHDT 170

Query: 91  ----------LYKAPELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
                      Y +PE +    +     +K D++S G +LYE+     P+       +E+
Sbjct: 171 SFAKTFVGTPYYMSPEQMNRMSY----NEKSDIWSLGCLLYELCALMPPFTAFSQ--KEL 224

Query: 140 ITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRPD 179
              + +G   R P   S +    I   +          RP 
Sbjct: 225 AGKIREGKFRRIPYRYSDELNEIITRMLNL----KDYHRPS 261

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 28/167 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDS-------------RWVLQIADFGLHAFKAGQDETG 81
           G+ HLH  +II H +L+  N L+ +                + I+DFGL   K    ++ 
Sbjct: 127 GVAHLHSLKII-HRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGL-CKKLDSGQSS 184

Query: 82  QERKLRRRK---LYKAPELLRQPHLPRG----TQKGDVYSFGLVLYEVIGR-QGPWGHLR 133
               L        ++APELL + +  +     T+  D++S G V Y ++ + + P+G   
Sbjct: 185 FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY 244

Query: 134 MTDEEIITSVTQGSGLR--PDTSSLDCAPSIIACMRTCWEEDPELRP 178
             +  II  +     ++   D S +  A  +I+ M      DP  RP
Sbjct: 245 SRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDH---DPLKRP 288

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 26/168 (15%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL 97
            LH   ++ H  LR  + ++D R  + +  F     + G             + +  PE 
Sbjct: 226 SLHHYGLV-HTYLRPVDIVLDQRGGVFLTGFEH-LVRDGAS-----AVSPIGRGFAPPET 278

Query: 98  L-------RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR 150
                    Q H    T   D ++ GL +Y +     P              + +     
Sbjct: 279 TAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNT--DDAALGGSEWIFRSCKNI 336

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV--HHKLKEMNAGLKA 196
           P          +   +R       E R          + +++   L A
Sbjct: 337 PQ----PVRALLEGFLR----YPKEDRLLPLQAMETPEYEQLRTELSA 376

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 17/73 (23%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL-- 91
           G+ ++H ++I+ H +++++N LI    VL++ADFGL  AF          +  +  +   
Sbjct: 136 GLYYIHRNKIL-HRDMKAANVLITRDGVLKLADFGLARAF-------SLAKNSQPNRYTN 187

Query: 92  ------YKAPELL 98
                 Y+ PELL
Sbjct: 188 RVVTLWYRPPELL 200

>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A Length = 235

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 334 VEPESFDSVTIYFSDIVGFTQLSAESTE 361
              E  D VT+ F+DI   T L A   +
Sbjct: 5   APKEPTDPVTLIFTDIESSTALWAAHPD 32

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ HLH + II H +L+ SN ++ S   L+I DFGL A  AG         + R   Y+A
Sbjct: 139 GIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGL-ARTAGTSFMMTPYVVTR--YYRA 194

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           PE++         +  D++S G ++ E+I   
Sbjct: 195 PEVILGMGY---KENVDIWSVGCIMGEMIKGG 223

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 15/161 (9%)

Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ-DETG 81
           +G ++V       + +L +   + H +++ SN L+D R  +++ DFG+    +G+  +  
Sbjct: 126 LGKMTVAIVK--ALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGI----SGRLVDDK 179

Query: 82  QERKLRRRKLYKAPELLRQPHLPRGT--QKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI 139
            + +      Y APE +  P   +     + DV+S G+ L E+   Q P+ + + TD E+
Sbjct: 180 AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK-TDFEV 238

Query: 140 ITSVTQGS--GLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
           +T V Q     L           S +     C  +D   RP
Sbjct: 239 LTKVLQEEPPLLPGHMGFSGDFQSFVKD---CLTKDHRKRP 276

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 23/117 (19%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGL-HAFKAGQDETGQERKLRRR---K 90
           +LH   I+ H +L+  N L++S+    +++I DFGL   F+  +       K++ R    
Sbjct: 151 YLHKHNIV-HRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK-------KMKERLGTA 202

Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQG 146
            Y APE+LR+ +     +K DV+S G++L+ ++ G     G    TD+EI+  V +G
Sbjct: 203 YYIAPEVLRKKY----DEKCDVWSIGVILFILLAGYPPFGG---QTDQEILRKVEKG 252

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 18/93 (19%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           G  +LH + +I H +L+  N  ++    ++I DFGL        E       R++ L   
Sbjct: 127 GCQYLHRNRVI-HRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE-------RKKVLCGT 178

Query: 92  --YKAPELL-RQPHLPRGTQKGDVYSFGLVLYE 121
             Y APE+L ++ H      + DV+S G ++Y 
Sbjct: 179 PNYIAPEVLSKKGHSF----EVDVWSIGCIMYT 207

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 20/93 (21%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
            + + H   +I H +++  N L+ S   L+IADFG                 RR  L   
Sbjct: 121 ALSYCHSKRVI-HRDIKPENLLLGSAGELKIADFGWSVHAPSS---------RRTDLCGT 170

Query: 92  --YKAPELL-RQPHLPRGTQKGDVYSFGLVLYE 121
             Y  PE++  + H     +K D++S G++ YE
Sbjct: 171 LDYLPPEMIEGRMH----DEKVDLWSLGVLCYE 199

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 29/152 (19%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGL-HAFKAGQDETGQERKLRRR---K 90
           +LH   I+ H +++  N L++++     ++I DFGL   F           KLR R    
Sbjct: 161 YLHKHNIV-HRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY-------KLRDRLGTA 212

Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGL 149
            Y APE+L++ +     +K DV+S G+++Y ++ G     G     D++II  V +G   
Sbjct: 213 YYIAPEVLKKKY----NEKCDVWSCGVIMYILLCGYPPFGGQ---NDQDIIKKVEKG--- 262

Query: 150 RPDTSSLDCA---PSIIACMRTCWEEDPELRP 178
           +      D           ++     D   R 
Sbjct: 263 KYYFDFNDWKNISDEAKELIKLMLTYDYNKRC 294

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 19/98 (19%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           GM++LH   I+ H +L  SN L+     ++IADFGL        E       +   L   
Sbjct: 124 GMLYLHSHGIL-HRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE-------KHYTLCGT 175

Query: 92  --YKAPELL-RQPHLPRGTQKGDVYSFGLVLYE-VIGR 125
             Y +PE+  R  H      + DV+S G + Y  +IGR
Sbjct: 176 PNYISPEIATRSAH----GLESDVWSLGCMFYTLLIGR 209

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 18/93 (19%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
           G  +LH + +I H +L+  N  ++    ++I DFGL        E       R++ L   
Sbjct: 153 GCQYLHRNRVI-HRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE-------RKKVLCGT 204

Query: 92  --YKAPELL-RQPHLPRGTQKGDVYSFGLVLYE 121
             Y APE+L ++ H    + + DV+S G ++Y 
Sbjct: 205 PNYIAPEVLSKKGH----SFEVDVWSIGCIMYT 233

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 23/103 (22%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLI----DSRWVLQIADFGLHAFKAGQDET-----GQERK 85
           GM HL ++ I+ H N++  N +     D + V ++ DFG  A +   DE      G E  
Sbjct: 124 GMNHLRENGIV-HRNIKPGNIMRVIGEDGQSVYKLTDFGA-ARELEDDEQFVSLYGTE-- 179

Query: 86  LRRRKLYKAPELLRQPHLPRGTQKG-----DVYSFGLVLYEVI 123
                 Y  P++  +  L +  QK      D++S G+  Y   
Sbjct: 180 -----EYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAA 217

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 12/94 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG--QERKLRRRKLY 92
           G+ ++H + ++ H +L+  N  ++    L+I DFGL A  A  + TG    R       Y
Sbjct: 138 GLKYIHSAGVV-HRDLKPGNLAVNEDCELKILDFGL-ARHADAEMTGYVVTR------WY 189

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           +APE++         Q  D++S G ++ E++  +
Sbjct: 190 RAPEVILSWM--HYNQTVDIWSVGCIMAEMLTGK 221

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 44/167 (26%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLID-------------------SRWVLQIADFGLHA-FK 74
           G+ ++H   ++ H +++ SN  I                    ++ + +I D G      
Sbjct: 127 GLRYIHSMSLV-HMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRIS 185

Query: 75  AGQDETGQERKLRRRKLYKAPELLRQ--PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHL 132
           + Q E G  R       + A E+L++   HLP    K D+++  L +    G +    + 
Sbjct: 186 SPQVEEGDSR-------FLANEVLQENYTHLP----KADIFALALTVVCAAGAEPLPRNG 234

Query: 133 RMTDEEIITSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
                     + QG   R P   S +    +   +      DPE RP
Sbjct: 235 DQ-----WHEIRQGRLPRIPQVLSQEFTELLKVMIHP----DPERRP 272

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 23/103 (22%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLI----DSRWVLQIADFGLHAFKAGQDET-----GQERK 85
           GM HL ++ I+ H N++  N +     D + V ++ DFG  A +   DE      G E  
Sbjct: 124 GMNHLRENGIV-HRNIKPGNIMRVIGEDGQSVYKLTDFGA-ARELEDDEQFVSLYGTE-- 179

Query: 86  LRRRKLYKAPELLRQPHLPRGTQKG-----DVYSFGLVLYEVI 123
                 Y  P++  +  L +  QK      D++S G+  Y   
Sbjct: 180 -----EYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAA 217

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ-DETG 81
           +G I++ T     + HL ++  I H +++ SN L+D    +++ DFG+    +GQ  ++ 
Sbjct: 127 LGKITLATVK--ALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGI----SGQLVDSI 180

Query: 82  QERKLRRRKLYKAPELLRQPHLPRG-TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEII 140
            + +    + Y APE +      +G   + DV+S G+ LYE+   + P+     +  + +
Sbjct: 181 AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN-SVFDQL 239

Query: 141 TSVTQGSGLR-PDTSSLDCAPSIIACMRTCWEEDPELRP 178
           T V +G   +  ++   + +PS I  +  C  +D   RP
Sbjct: 240 TQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRP 278

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 20/93 (21%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
            + + H+ ++I H +++  N L+  +  L+IADFG                 RRR +   
Sbjct: 126 ALHYCHERKVI-HRDIKPENLLMGYKGELKIADFGWSVHAPSL---------RRRTMCGT 175

Query: 92  --YKAPELL-RQPHLPRGTQKGDVYSFGLVLYE 121
             Y  PE++  + H     +K D++  G++ YE
Sbjct: 176 LDYLPPEMIEGKTH----DEKVDLWCAGVLCYE 204

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ HLH + II H +L+ SN ++ S   L+I DFGL A  AG         + R   Y+A
Sbjct: 176 GIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGL-ARTAGTSFMMTPYVVTR--YYRA 231

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           PE++         +  D++S G ++ E++  +
Sbjct: 232 PEVILGMGY---KENVDIWSVGCIMGEMVRHK 260

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 23/117 (19%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGL-HAFKAGQDETGQERKLRRR---K 90
           ++H ++I+ H +L+  N L++S+     ++I DFGL   F+A +       K++ +    
Sbjct: 141 YMHKNKIV-HRDLKPENLLLESKSKDANIRIIDFGLSTHFEASK-------KMKDKIGTA 192

Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-WGHLRMTDEEIITSVTQG 146
            Y APE+L   +     +K DV+S G++LY ++    P  G     + +I+  V +G
Sbjct: 193 YYIAPEVLHGTY----DEKCDVWSTGVILYILLSGCPPFNGA---NEYDILKKVEKG 242

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 12/94 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG--QERKLRRRKLY 92
           G+ ++H + II H +L+  N  ++    L+I DFGL A +A  + TG    R       Y
Sbjct: 140 GLRYIHAAGII-HRDLKPGNLAVNEDCELKILDFGL-ARQADSEMTGYVVTR------WY 191

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           +APE++      R TQ  D++S G ++ E+I  +
Sbjct: 192 RAPEVILNWM--RYTQTVDIWSVGCIMAEMITGK 223

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 23/174 (13%)

Query: 23  IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQ 82
           +G +S+      G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ     
Sbjct: 133 LGKVSIAVIK--GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSM 186

Query: 83  ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEV-IGR------QGPWGHLRMT 135
                  + Y +PE L+  H    + + D++S GL L E+ +GR            L   
Sbjct: 187 ANSFVGTRSYMSPERLQGTHY---SVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFG 243

Query: 136 DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWE-------EDPELRPDLRF 182
            +    +       R     L+            +E       E P   P   F
Sbjct: 244 CQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVF 297

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+  LH++ ++ H +L   N L+     + I DF L A +   D         R   Y+A
Sbjct: 146 GLHVLHEAGVV-HRDLHPGNILLADNNDITICDFNL-AREDTADANKTHYVTHR--WYRA 201

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           PEL+ Q      T+  D++S G V+ E+  R+
Sbjct: 202 PELVMQFK--GFTKLVDMWSAGCVMAEMFNRK 231

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
            +  LH S +I H +L+ SN LI+S   L++ DFGL            E   ++  +   
Sbjct: 124 AVKVLHGSNVI-HRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEF 182

Query: 92  -----YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
                Y+APE++      + ++  DV+S G +L E+  R+
Sbjct: 183 VATRWYRAPEVMLTSA--KYSRAMDVWSCGCILAELFLRR 220

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ-DETGQERKLRRRKLYK 93
            + ++H    + H ++++S+ LI     + ++               GQ +++       
Sbjct: 140 ALDYIHHMGYV-HRSVKASHILISVDGKVYLSGLRS----NLSMISHGQRQRVVHDFPKY 194

Query: 94  --------APELLRQPHLPRGTQKGDVYSFGLVLYE 121
                   +PE+L+Q        K D+YS G+   E
Sbjct: 195 SVKVLPWLSPEVLQQNLQGYDA-KSDIYSVGITACE 229

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG--QERKLRRRKLY 92
           G+ ++H ++II H +L+ SN  ++    L+I DFGL A     + TG    R       Y
Sbjct: 144 GLKYIHSADII-HRDLKPSNLAVNEDCELKILDFGL-ARHTADEMTGYVATR------WY 195

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQ 126
           +APE++         Q  D++S G ++ E++  +
Sbjct: 196 RAPEIMLNWM--HYNQTVDIWSVGCIMAELLTGR 227

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 12/115 (10%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSR--WVLQIADFGLHAFKAGQDETGQERKLRRR---KLY 92
           +LH+  I  H +++  N L  +   + +++ DFGL + +  +   G+   +  +     +
Sbjct: 183 YLHNQGIC-HRDIKPENFLFSTNKSFEIKLVDFGL-SKEFYKLNNGEYYGMTTKAGTPYF 240

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-WGHLRMTDEEIITSVTQG 146
            APE+L   +   G  K D +S G++L+ ++    P  G     D + I+ V   
Sbjct: 241 VAPEVLNTTNESYGP-KCDAWSAGVLLHLLLMGAVPFPGV---NDADTISQVLNK 291

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 16/106 (15%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQ-DETGQERKLRRRK--- 90
           G+ +LH +  I H ++++ N L+     +QIADFG+    +      G   + + RK   
Sbjct: 133 GLEYLHKNGQI-HRDVKAGNILLGEDGSVQIADFGV----SAFLATGGDITRNKVRKTFV 187

Query: 91  ---LYKAPELLRQPHLPRG-TQKGDVYSFGLVLYEVIGRQGPWGHL 132
               + APE++ Q     G   K D++SFG+   E+     P+   
Sbjct: 188 GTPCWMAPEVMEQVR---GYDFKADIWSFGITAIELATGAAPYHKY 230

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 16/90 (17%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-----Y 92
           +LH   II H +L+  N L++    +QI DFG    K    E+ Q R            Y
Sbjct: 145 YLHGKGII-HRDLKPENILLNEDMHIQITDFGTA--KVLSPESKQARA---NSFVGTAQY 198

Query: 93  KAPELLR-QPHLPRGTQKGDVYSFGLVLYE 121
            +PELL  +       +  D+++ G ++Y+
Sbjct: 199 VSPELLTEKSA----CKSSDLWALGCIIYQ 224

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 12/68 (17%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL-- 91
           G+  LH + I+ H +L+  N L+ S   +++ADFGL   +         +  L    +  
Sbjct: 132 GLDFLHANCIV-HRDLKPENILVTSGGTVKLADFGLARIY-------SYQMALTPVVVTL 183

Query: 92  -YKAPELL 98
            Y+APE+L
Sbjct: 184 WYRAPEVL 191

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 12/68 (17%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKL-- 91
           G+  LH   ++ H +L+  N L+ S   +++ADFGL   +         +  L    +  
Sbjct: 132 GLDFLHSHRVV-HRDLKPQNILVTSSGQIKLADFGLARIY-------SFQMALTSVVVTL 183

Query: 92  -YKAPELL 98
            Y+APE+L
Sbjct: 184 WYRAPEVL 191

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 23/117 (19%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGL-HAFKAGQDETGQERKLRRR---K 90
           ++H   I+ H +L+  N L++S+     ++I DFGL   F+          K++ R    
Sbjct: 136 YMHKHNIV-HRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT-------KMKDRIGTA 187

Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGP-WGHLRMTDEEIITSVTQG 146
            Y APE+LR  +     +K DV+S G++LY ++    P +G     + +I+  V  G
Sbjct: 188 YYIAPEVLRGTY----DEKCDVWSAGVILYILLSGTPPFYGK---NEYDILKRVETG 237

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 15/92 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL--- 91
              ++H+ + I H +++ SN L+D    ++++DFG   +   +         + +     
Sbjct: 163 SFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK---------KIKGSRGT 213

Query: 92  --YKAPELLRQPHLPRGTQKGDVYSFGLVLYE 121
             +  PE         G  K D++S G+ LY 
Sbjct: 214 YEFMPPEFFSNESSYNG-AKVDIWSLGICLYV 244

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 43/210 (20%)

Query: 38  HLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQERKLRRR---KLYK 93
           + H   I+ H +L++ N L+D+   ++IADFG    F  G        KL        Y 
Sbjct: 129 YCHQKRIV-HRDLKAENLLLDADMNIKIADFGFSNEFTVGG-------KLDAFCGAPPYA 180

Query: 94  APELLR-QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDE---EIITSVTQGSGL 149
           APEL + + +      + DV+S G++LY ++      G L    +   E+   V +G   
Sbjct: 181 APELFQGKKYDGP---EVDVWSLGVILYTLVS-----GSLPFDGQNLKELRERVLRGKYR 232

Query: 150 RPDTSSLDCAPSIIACMRTCWEEDPELRPDLR-----------FVHHKLKEMNAGLKANI 198
            P   S DC  +++         +P  R  L                +LK          
Sbjct: 233 IPFYMSTDCE-NLLKRFLVL---NPIKRGTLEQIMKDRWINAGHEEDELKPFVEPELDIS 288

Query: 199 FDNMLAIMEKYAFNLEGEWTDWTASLRRRP 228
               + IM    ++ E    +   SL +  
Sbjct: 289 DQKRIDIMVGMGYSQE----EIQESLSKMK 314

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL 70
           G+ +LH   I+ H +L+ +N L+D   VL++ADFGL
Sbjct: 124 GLEYLHQHWIL-HRDLKPNNLLLDENGVLKLADFGL 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.98
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.98
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.98
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.98
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.97
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.96
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.96
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.96
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.95
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.95
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.95
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.95
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.95
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.95
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.95
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.95
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.95
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.95
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.95
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.95
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.95
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.95
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.95
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.95
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.95
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.95
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.95
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.95
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.95
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.95
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.95
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.95
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.95
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.95
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.95
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.95
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.95
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.95
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.95
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.95
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.95
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.95
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.95
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.94
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.94
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.94
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.94
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.94
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.94
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.94
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.94
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.94
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.94
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.94
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.94
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.94
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.94
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.94
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.94
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.94
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.94
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.94
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.94
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.94
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.94
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.94
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.94
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.94
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.94
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.94
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.94
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.94
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.94
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.94
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.94
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.94
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.94
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.94
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.94
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.94
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.94
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.94
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.94
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.94
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.94
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.94
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.94
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.94
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.94
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.94
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.94
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.94
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.94
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.94
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.94
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.94
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.94
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.94
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.94
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.94
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.94
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.94
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.94
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.94
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.94
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.94
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.94
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.94
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.94
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.94
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.94
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.94
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.94
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.94
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.94
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.93
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.93
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.93
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.93
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.93
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.93
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.93
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.93
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.93
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.93
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.93
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.93
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.93
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.93
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.93
3niz_A	311	Rhodanese family protein; structural genomics, str	99.93
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.93
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.93
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.93
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.93
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.93
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.93
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.93
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.93
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.93
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.93
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.93
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.93
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.93
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.93
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.93
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.93
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.93
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.93
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.93
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.93
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.93
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.93
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.93
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.93
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.93
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.93
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.93
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.93
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.93
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.93
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.93
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.93
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.93
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.93
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.93
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.93
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.93
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.93
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.93
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.93
3bhy_A	283	Death-associated protein kinase 3; death associate	99.93
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.93
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.93
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.93
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.93
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.93
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.93
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.93
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.93
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.93
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.93
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.93
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.93
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.93
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.93
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.93
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.93
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.93
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.92
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.92
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.92
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.92
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.92
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.92
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.92
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.92
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.92
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.92
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.92
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.92
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.92
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.92
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.92
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.92
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.92
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.92
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.92
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.92
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.92
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.92
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.92
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.92
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.92
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.92
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.92
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.92
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.92
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.92
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.92
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.92
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.92
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.92
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.92
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.92
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.92
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.92
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.92
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.92
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.92
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.91
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.91
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.91
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.9
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.89
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3uqc_A	286	Probable conserved transmembrane protein; structur	99.85
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.82
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.71
1y10_A	407	Hypothetical protein RV1264/MT1302; adenylyl cycla	99.64
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.38
3uvj_A	225	Guanylate cyclase soluble subunit alpha-3; nitric	99.35
2wz1_A	219	Guanylate cyclase soluble subunit beta-1; lyase, G	99.33
1ab8_A	220	Adenylyl cyclase; lyase, complex (transferase-inhi	99.3
1azs_A	220	VC1; complex (lyase/hydrolase), hydrolase, signal	99.23
3et6_A	190	Soluble guanylyl cyclase beta; guanylate cyclase,	99.2
1yk9_A	204	Adenylate cyclase; beta-alpha-beta sandwich, struc	99.19
1fx2_A	235	Receptor-type adenylate cyclase gresag 4.1; CAMP,	99.11
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.04
1ybt_A	184	Hydrolase, alpha/beta hydrolase fold family; cycla	99.0
2w01_A	208	Adenylate cyclase; guanylyl cyclase, class III nuc	98.98
3r5g_A	198	CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas	98.86
1wc3_A	219	Adenylate cyclase; soluble adenylyl cyclase, CAMP	98.85
3hls_A	66	Guanylate cyclase soluble subunit beta-1; coiled-c	98.78
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.74
3mr7_A	189	Adenylate/guanylate cyclase/hydrolase, alpha/beta	98.68
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.08
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	96.85
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.77
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	96.59
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	96.13
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	95.5
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	93.98
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	93.67
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	90.21
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	89.46
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	87.63
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	87.05
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	83.02
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	82.51
3ats_A	357	Putative uncharacterized protein; hypothetical pro	81.08
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	80.06

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=294.98  Aligned_cols=166  Identities=27%  Similarity=0.458  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ++.++.||+.||+|||+++|| ||||||+||||+.++.+||+|||+|+...............||+.|||||++.+....
T Consensus       134 ~~~i~~qia~gL~yLH~~~Ii-HRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~  212 (307)
T 3omv_A          134 LIDIARQTAQGMDYLHAKNII-HRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNN  212 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-CCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCC
Confidence            789999999999999999998 9999999999999999999999999876443333334566899999999999765433


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCC--CCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD--TSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~--~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      .++.++|||||||++|||+||+.||.+.. ....+...+..+. ..|.  .....+++++.+||.+||+.||++|||+.+
T Consensus       213 ~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~-~~~~~~~~~~~~~-~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e  290 (307)
T 3omv_A          213 PFSFQSDVYSYGIVLYELMTGELPYSHIN-NRDQIIFMVGRGY-ASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ  290 (307)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCTTTTCC-CHHHHHHHHHTTC-CCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHH
T ss_pred             CCCcHHHhHhHHHHHHHHHHCCCCCCCCC-hHHHHHHHHhcCC-CCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHH
Confidence            45899999999999999999999997532 2333444444432 2222  223578999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      |++.|+.+...
T Consensus       291 i~~~Le~l~~~  301 (307)
T 3omv_A          291 ILSSIELLQHS  301 (307)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhcc
Confidence            99999887654

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=3.5e-36  Score=291.93  Aligned_cols=158  Identities=23%  Similarity=0.416  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .++.++.||+.||+|||++++| ||||||+||||++++.+||+|||+++...............||+.|||||++.+..+
T Consensus       146 ~~~~i~~qia~gl~yLH~~~ii-HRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~  224 (308)
T 4gt4_A          146 DFVHLVAQIAAGMEYLSSHHVV-HKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKF  224 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC-CCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCC
Confidence            3789999999999999999998 999999999999999999999999987654433333345678999999999988765


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||+| |..||.+  .+..+++..+..+...  +. +..+++++.+||.+||+.||++||||.+
T Consensus       225 ---s~ksDVwSfGvvl~El~t~g~~Pf~~--~~~~~~~~~i~~~~~~--~~-p~~~~~~~~~li~~C~~~dP~~RPs~~e  296 (308)
T 4gt4_A          225 ---SIDSDIWSYGVVLWEVFSYGLQPYCG--YSNQDVVEMIRNRQVL--PC-PDDCPAWVYALMIECWNEFPSRRPRFKD  296 (308)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCTTTT--CCHHHHHHHHHTTCCC--CC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CccchhhhHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCC--CC-cccchHHHHHHHHHHcCCChhHCcCHHH
Confidence               999999999999999998 8999974  5678888888876432  22 3478999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1840         183 VHHKLKEM  190 (423)
Q Consensus       183 I~~~L~~i  190 (423)
                      |++.|+.+
T Consensus       297 i~~~L~a~  304 (308)
T 4gt4_A          297 IHSRLRAW  304 (308)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHhc
Confidence            99998754

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=8.7e-36  Score=291.77  Aligned_cols=161  Identities=28%  Similarity=0.559  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ++.++.||+.||+|||++++| ||||||+||||+.++.+||+|||+++...............||+.|||||++.+..+ 
T Consensus       160 ~~~i~~qia~gl~yLH~~~ii-HRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~-  237 (329)
T 4aoj_A          160 LLAVASQVAAGMVYLAGLHFV-HRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKF-  237 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHHHhcCCee-cccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCC-
Confidence            789999999999999999998 999999999999999999999999986644433333345678999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||+| |+.||.+  .+..+++..+..+..  +.. +..+++++.+||.+||+.||++|||+.+|
T Consensus       238 --~~~sDvwS~Gvvl~Ellt~G~~Pf~~--~~~~~~~~~i~~g~~--~~~-p~~~~~~~~~li~~cl~~dP~~RPs~~ei  310 (329)
T 4aoj_A          238 --TTESDVWSFGVVLWEIFTYGKQPWYQ--LSNTEAIDCITQGRE--LER-PRACPPEVYAIMRGCWQREPQQRHSIKDV  310 (329)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTCS--SCHHHHHHHHHHTCC--CCC-CTTCCHHHHHHHHHHCCSSTTTSCCHHHH
T ss_pred             --CccccccchHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcCCC--CCC-cccccHHHHHHHHHHcCcChhHCcCHHHH
Confidence              999999999999999998 8999974  567788888877643  222 24689999999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q psy1840         184 HHKLKEMNAGL  194 (423)
Q Consensus       184 ~~~L~~i~~~~  194 (423)
                      ++.|+.+....
T Consensus       311 ~~~L~~l~~~p  321 (329)
T 4aoj_A          311 HARLQALAQAP  321 (329)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHhhCC
Confidence            99999887653

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3e-36  Score=291.29  Aligned_cols=160  Identities=24%  Similarity=0.532  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ++.++.||+.||.|||+++++ ||||||+|||++.++.+||+|||+++...............||+.|||||++.+..+ 
T Consensus       130 ~~~i~~qia~gl~yLH~~~ii-HRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~-  207 (299)
T 4asz_A          130 MLHIAQQIAAGMVYLASQHFV-HRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKF-  207 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCC-
Confidence            789999999999999999998 999999999999999999999999986544333333344568899999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||+| |+.||.+  .+..+++..+..+...  .. +..+++++.+||.+||+.||++|||+.+|
T Consensus       208 --~~k~DVwS~Gvvl~Ellt~G~~Pf~~--~~~~~~~~~i~~~~~~--~~-p~~~~~~~~~li~~cl~~dP~~RPs~~~i  280 (299)
T 4asz_A          208 --TTESDVWSLGVVLWEIFTYGKQPWYQ--LSNNEVIECITQGRVL--QR-PRTCPQEVYELMLGCWQREPHMRKNIKGI  280 (299)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTTCCTTTT--SCHHHHHHHHHHTCCC--CC-CTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CchhhHHHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHcCCCC--CC-CccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence              999999999999999998 8999974  5678888888876532  22 24689999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      .+.|+.+.+.
T Consensus       281 ~~~L~~~~~~  290 (299)
T 4asz_A          281 HTLLQNLAKA  290 (299)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999887654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.9e-35  Score=289.67  Aligned_cols=161  Identities=25%  Similarity=0.423  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||+|||++++| ||||||+|||++.++.+||+|||+|+...............||+.|||||++.+..+
T Consensus       186 ~~~~~~~qia~gl~yLH~~~ii-HRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y  264 (353)
T 4ase_A          186 HLICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY  264 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhHhhCCee-cCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCC
Confidence            3789999999999999999998 999999999999999999999999987654443333455678999999999988765


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||+| |+.||.+... ...+...+..+..  +.. +..+++++.++|.+||+.||++|||+.+
T Consensus       265 ---~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~-~~~~~~~i~~g~~--~~~-p~~~~~~~~~li~~c~~~dP~~RPt~~e  337 (353)
T 4ase_A          265 ---TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEGTR--MRA-PDYTTPEMYQTMLDCWHGEPSQRPTFSE  337 (353)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHHTCC--CCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CCcccEeehHHHHHHHHhCCCCCCCCCCH-HHHHHHHHHcCCC--CCC-CccCCHHHHHHHHHHcCcChhHCcCHHH
Confidence               999999999999999998 8999976433 3556666666542  222 2368999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      |++.|+.+.+
T Consensus       338 il~~L~~llq  347 (353)
T 4ase_A          338 LVEHLGNLLQ  347 (353)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=8.7e-34  Score=277.46  Aligned_cols=160  Identities=17%  Similarity=0.232  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcc---cccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDET---GQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~---~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.||+.||+|||+++|| ||||||+||||+.+| .+||+|||+++........   ......+||+.|||||++.+
T Consensus       152 ~~~~~~qi~~aL~ylH~~~Ii-HRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~  230 (336)
T 4g3f_A          152 ALYYLGQALEGLEYLHTRRIL-HGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMG  230 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCce-ecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCC
Confidence            678999999999999999988 999999999999988 5999999999876433211   12234679999999999998


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+   +.++|||||||++|||++|+.||.+..  ..++...+.......+. .+..+++.+.+++.+||+.||.+|||+
T Consensus       231 ~~y---~~~~DiwSlGvilyemltG~~Pf~~~~--~~~~~~~i~~~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~R~sa  304 (336)
T 4g3f_A          231 KPC---DAKVDIWSSCCMMLHMLNGCHPWTQYF--RGPLCLKIASEPPPIRE-IPPSCAPLTAQAIQEGLRKEPVHRASA  304 (336)
T ss_dssp             CCC---CTHHHHHHHHHHHHHHHHSSCSSTTTC--CSCCHHHHHHSCCGGGG-SCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCC---CcHHHHHHHHHHHHHHHHCcCCCCCCC--HHHHHHHHHcCCCCchh-cCccCCHHHHHHHHHHccCCHhHCcCH
Confidence            765   899999999999999999999997532  33455555554332222 234689999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy1840         181 RFVHHKLKEMN  191 (423)
Q Consensus       181 ~~I~~~L~~i~  191 (423)
                      .++++.|....
T Consensus       305 ~el~~~l~~~l  315 (336)
T 4g3f_A          305 MELRRKVGKAL  315 (336)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998876654

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2.7e-33  Score=274.85  Aligned_cols=153  Identities=18%  Similarity=0.287  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++||| ||||||+||||+.+|.+||+|||+++.......  .....+||+.|||||++.+..+ 
T Consensus       172 ~~~~~~qi~~aL~ylH~~~Ii-HRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GTp~YmAPEvl~~~~y-  247 (346)
T 4fih_A          172 IAAVCLAVLQALSVLHAQGVI-HRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPELISRLPY-  247 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cccCCHHHEEECCCCCEEEecCcCceecCCCCC--cccccccCcCcCCHHHHCCCCC-
Confidence            578999999999999999988 999999999999999999999999986543322  2346789999999999987766 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|+.||.+  .+..+++..+.......... ...+++++.+||.+||+.||++|||+.+++
T Consensus       248 --~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~~~~-~~~~s~~~~dli~~~L~~dP~~R~ta~e~l  322 (346)
T 4fih_A          248 --GPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLPPRLKN-LHKVSPSLKGFLDRLLVRDPAQRATAAELL  322 (346)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSSCCCCSC-GGGSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             --CcHHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence              8999999999999999999999974  45677777777654332222 236789999999999999999999999987


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       323 ~H  324 (346)
T 4fih_A          323 KH  324 (346)
T ss_dssp             TC
T ss_pred             cC
Confidence            63

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.5e-33  Score=266.93  Aligned_cols=149  Identities=22%  Similarity=0.375  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSE--IISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.||+.||+|||+++  |+ ||||||+||||++ ++.+||+|||+|+.....    .....+||+.|||||++.+.
T Consensus       131 ~~~~~~qi~~aL~ylH~~~~~Ii-HRDlKp~NILl~~~~g~vKl~DFGla~~~~~~----~~~~~~GTp~YmAPE~~~~~  205 (290)
T 3fpq_A          131 LRSWCRQILKGLQFLHTRTPPII-HRDLKCDNIFITGPTGSVKIGDLGLATLKRAS----FAKAVIGTPEFMAPEMYEEK  205 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCC-CCCCCGGGEEESSTTSCEEECCTTGGGGCCTT----SBEESCSSCCCCCGGGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEE-ecccChhheeEECCCCCEEEEeCcCCEeCCCC----ccCCcccCccccCHHHcCCC
Confidence            5789999999999999998  87 9999999999985 799999999999764322    22456899999999998753


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                          ++.++|||||||++|||++|+.||.+. .....+...+..+.  .|......+++++.+|+.+||+.||++|||+.
T Consensus       206 ----y~~~~DiwSlGvilyelltg~~Pf~~~-~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~  278 (290)
T 3fpq_A          206 ----YDESVDVYAFGMCMLEMATSEYPYSEC-QNAAQIYRRVTSGV--KPASFDKVAIPEVKEIIEGCIRQNKDERYSIK  278 (290)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHSSCTTTTC-SSHHHHHHHHTTTC--CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             ----CCcHHHHHHHHHHHHHHHHCCCCCCCC-CcHHHHHHHHHcCC--CCCCCCccCCHHHHHHHHHHccCChhHCcCHH
Confidence                389999999999999999999999643 34456666666543  23223345788999999999999999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      ++++
T Consensus       279 e~l~  282 (290)
T 3fpq_A          279 DLLN  282 (290)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9875

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=9.2e-33  Score=263.31  Aligned_cols=150  Identities=20%  Similarity=0.301  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+|+......   ......||+.|+|||++.+..+ 
T Consensus       114 ~~~~~~qi~~al~ylH~~~Ii-HRDiKP~NILl~~~~~vkl~DFGla~~~~~~~---~~~~~~GT~~Y~APE~~~~~~y-  188 (275)
T 3hyh_A          114 ARRFFQQIISAVEYCHRHKIV-HRDLKPENLLLDEHLNVKIADFGLSNIMTDGN---FLKTSCGSPNYAAPEVISGKLY-  188 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCTTTEEECTTCCEEECCSSCC------------------CTTSCHHHHSSSSC-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cccCChHHeEECCCCCEEEeecCCCeecCCCC---ccCCeeECcccCChhhhcCCCC-
Confidence            579999999999999999998 99999999999999999999999997654322   2245689999999999987653 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                       .+.++||||+||++|||++|+.||.+  .+..++...+..+....|    ..+++++.+++.+||+.||++|||+.+++
T Consensus       189 -~~~~~DiwSlGvily~lltg~~PF~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~~L~~dP~~R~s~~eil  261 (275)
T 3hyh_A          189 -AGPEVDVWSCGVILYVMLCRRLPFDD--ESIPVLFKNISNGVYTLP----KFLSPGAAGLIKRMLIVNPLNRISIHEIM  261 (275)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCC----TTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             -CCChhhhHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHccCChhHCcCHHHHH
Confidence             36899999999999999999999974  456777788877654433    35789999999999999999999999998


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       262 ~h  263 (275)
T 3hyh_A          262 QD  263 (275)
T ss_dssp             HC
T ss_pred             cC
Confidence            74

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=2.5e-33  Score=275.50  Aligned_cols=151  Identities=20%  Similarity=0.356  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++||+ ||||||+||||+.+|.+||+|||+++......  ......+||+.|||||++.+..+ 
T Consensus       127 ~~~~~~qi~~aL~ylH~~~Ii-HRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~~GT~~YmAPE~l~~~~y-  202 (350)
T 4b9d_A          127 ILDWFVQICLALKHVHDRKIL-HRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV--ELARACIGTPYYLSPEICENKPY-  202 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCE-ETTCCGGGEEECTTCCEEECSTTEESCCCHHH--HHHHHHHSCCTTCCHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eccCCHHHEEECCCCCEEEcccccceeecCCc--ccccccCCCccccCHHHHCCCCC-
Confidence            468999999999999999998 99999999999999999999999998653221  12245679999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|+.||.+  .+..+++..+..+...  . ....+++++.+||.+||+.||++|||+.+++
T Consensus       203 --~~~~DiwSlGvilyemltG~~PF~~--~~~~~~~~~i~~~~~~--~-~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l  275 (350)
T 4b9d_A          203 --NNKSDIWALGCVLYELCTLKHAFEA--GSMKNLVLKIISGSFP--P-VSLHYSYDLRSLVSQLFKRNPRDRPSVNSIL  275 (350)
T ss_dssp             --CHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCC--C-CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             --CcHHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHcCCCC--C-CCccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence              8999999999999999999999974  4567788888776432  2 2346899999999999999999999999997


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       276 ~h  277 (350)
T 4b9d_A          276 EK  277 (350)
T ss_dssp             TS
T ss_pred             cC
Confidence            64

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.98  E-value=3.3e-33  Score=270.69  Aligned_cols=168  Identities=26%  Similarity=0.397  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHhC--------CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLHDS--------EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYK   93 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~--------~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~   93 (423)
                      .+++++.|++.||+|||++        +|+ ||||||+|||||.++++||+|||+++........  .......||+.||
T Consensus       101 ~~~~i~~~ia~gl~ylH~~~~~~~~~~~Ii-HRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ym  179 (303)
T 3hmm_A          101 GMIKLALSTASGLAHLHMEIVGTQGKPAIA-HRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM  179 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHCCBCSTTCBCCEE-CSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCCCEe-eccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeeccccccccccc
Confidence            3789999999999999987        777 9999999999999999999999999876443322  1223457999999


Q ss_pred             CCccccCCCC---CCCCCccchHHHHHHHHHHHhCCCCCCCC-------------CCChHHHHHHHhcCCCCCCCCCC--
Q psy1840          94 APELLRQPHL---PRGTQKGDVYSFGLVLYEVIGRQGPWGHL-------------RMTDEEIITSVTQGSGLRPDTSS--  155 (423)
Q Consensus        94 APE~l~~~~~---~~~s~ksDVyS~Giil~elltg~~Pf~~~-------------~~~~~~i~~~i~~~~~~~p~~~~--  155 (423)
                      |||++.+...   ..++.++|||||||++|||+||..||...             .....++...+.. ...+|..+.  
T Consensus       180 APE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~rp~~p~~~  258 (303)
T 3hmm_A          180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCE-QKLRPNIPNRW  258 (303)
T ss_dssp             CHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT-SCCCCCCCGGG
T ss_pred             CHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhc-ccCCCCCCccc
Confidence            9999976421   12367999999999999999997765321             1122334433333 334444432  


Q ss_pred             --CCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhh
Q psy1840         156 --LDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       156 --~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~~  193 (423)
                        ..++..+.+||.+||+.||++|||+.+|++.|+++...
T Consensus       259 ~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          259 QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             GSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence              23556899999999999999999999999999888653

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.98  E-value=4e-33  Score=269.81  Aligned_cols=150  Identities=18%  Similarity=0.276  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++||+ ||||||+|||++.++.+||+|||+++............+.+||+.|||||++.+..+ 
T Consensus       134 ~~~~~~qi~~al~ylH~~~Ii-HRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y-  211 (311)
T 4aw0_A          134 TRFYTAEIVSALEYLHGKGII-HRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSA-  211 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-cCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCC-
Confidence            568999999999999999998 999999999999999999999999987654444344456789999999999988766 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++||||+||++|||++|..||.+  .+..++...+..+....|    ..+++++.+|+.+||+.||++|||+.++.
T Consensus       212 --~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          212 --CKSSDLWALGCIIYQLVAGLPPFRA--GNEGLIFAKIIKLEYDFP----EKFFPKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             --CHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCC----TTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             --CcHHHHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCC----cccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence              8999999999999999999999974  456788888887665443    35789999999999999999999998864

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.98  E-value=2e-32  Score=275.11  Aligned_cols=153  Identities=18%  Similarity=0.284  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++||| ||||||+||||+.+|.+||+|||+++......  ......+||+.|||||++.+..+ 
T Consensus       249 ~~~~~~qil~aL~ylH~~~Ii-HRDiKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~~GTp~YmAPEvl~~~~y-  324 (423)
T 4fie_A          249 IAAVCLAVLQALSVLHAQGVI-HRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--PRRKSLVGTPYWMAPELISRLPY-  324 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSTTTEEECTTCCEEECCCTTCEECCSSC--CCBCCCEECTTTCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cccCCHHHEEEcCCCCEEEecCccceECCCCC--ccccccccCcCcCCHHHHCCCCC-
Confidence            578999999999999999998 99999999999999999999999998654332  22346789999999999988766 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|+.||.+  .+..+++..+.......... ...+++++.+||.+||+.||++|||+.+++
T Consensus       325 --~~~~DiWSlGvilyeml~G~~PF~~--~~~~~~~~~i~~~~~~~~~~-~~~~s~~~~dli~~~L~~dP~~R~ta~ell  399 (423)
T 4fie_A          325 --GPEVDIWSLGIMVIEMVDGEPPYFN--EPPLKAMKMIRDNLPPRLKN-LHKVSPSLKGFLDRLLVRDPAQRATAAELL  399 (423)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCCCCSC-TTSSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             --CcHHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHcCCCCCCcc-cccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence              8999999999999999999999974  45677777777654332222 246899999999999999999999999987


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       400 ~H  401 (423)
T 4fie_A          400 KH  401 (423)
T ss_dssp             TC
T ss_pred             cC
Confidence            63

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.98  E-value=1.5e-32  Score=265.46  Aligned_cols=144  Identities=22%  Similarity=0.337  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+|+......  ......+||+.|||||++.+..+ 
T Consensus       128 ~~~~~~qi~~aL~ylH~~~Ii-HRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~~~~~~~GT~~YmAPE~~~~~~y-  203 (304)
T 3ubd_A          128 VKFYLAELALALDHLHSLGII-YRDLKPENILLDEEGHIKLTDFGLSKESIDHE--KKAYSFCGTVEYMAPEVVNRRGH-  203 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSSCCGGGEEECTTSCEEEESSEEEEC-------CCCCSCCCCGGGCCHHHHHTSCC-
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-CCCCCHHHeEEcCCCCEEecccccceeccCCC--ccccccccCcccCCHHHhccCCC-
Confidence            568999999999999999998 99999999999999999999999998643322  22245789999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++||||+||++|||++|+.||.+  .+..++...+..+....|    ..+++++.+|+.+||+.||++|||+
T Consensus       204 --~~~~DiwSlGvilyemltG~~PF~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          204 --TQSADWWSFGVLMFEMLTGTLPFQG--KDRKETMTMILKAKLGMP----QFLSPEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             --CCCCcccchHHHHHHHHhCCCCCCC--cCHHHHHHHHHcCCCCCC----CcCCHHHHHHHHHHcccCHHHCCCC
Confidence              8999999999999999999999974  466778888877654433    3578999999999999999999984

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.97  E-value=2.9e-31  Score=256.42  Aligned_cols=150  Identities=22%  Similarity=0.357  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc----------cccccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET----------GQERKLRRRKLYKA   94 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~----------~~~~~~~gt~~y~A   94 (423)
                      .+.++.||+.||+|||++||+ ||||||+|||++.++.+||+|||+++........          ......+||+.|||
T Consensus       120 ~~~i~~qi~~al~ylH~~~Ii-HRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmA  198 (299)
T 4g31_A          120 CLHIFLQIAEAVEFLHSKGLM-HRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMS  198 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTCCEEECCCCCC--------------------------CCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHCcCc-cccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccC
Confidence            468999999999999999998 9999999999999999999999999875432211          11234579999999


Q ss_pred             CccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840          95 PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus        95 PE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      ||++.+..+   +.++|||||||++|||++   ||... ......+..+....  .|+.. ...++.+.+|+++||+.||
T Consensus       199 PE~~~~~~y---~~~~DiwSlGvilyell~---Pf~~~-~~~~~~~~~~~~~~--~p~~~-~~~~~~~~~li~~~L~~dP  268 (299)
T 4g31_A          199 PEQIHGNSY---SHKVDIFSLGLILFELLY---PFSTQ-MERVRTLTDVRNLK--FPPLF-TQKYPCEYVMVQDMLSPSP  268 (299)
T ss_dssp             HHHHTTCCC---CTHHHHHHHHHHHHHHHS---CCSSH-HHHHHHHHHHHTTC--CCHHH-HHHCHHHHHHHHHHTCSSG
T ss_pred             HHHHcCCCC---CCHHHHHHHHHHHHHHcc---CCCCc-cHHHHHHHHHhcCC--CCCCC-cccCHHHHHHHHHHcCCCh
Confidence            999988765   899999999999999996   77531 11122233333322  12111 2345677899999999999


Q ss_pred             CCCCCHHHHHH
Q psy1840         175 ELRPDLRFVHH  185 (423)
Q Consensus       175 ~~RPt~~~I~~  185 (423)
                      ++|||+.++++
T Consensus       269 ~~Rps~~eil~  279 (299)
T 4g31_A          269 MERPEAINIIE  279 (299)
T ss_dssp             GGSCCHHHHHT
T ss_pred             hHCcCHHHHhc
Confidence            99999999875

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.96  E-value=8.5e-30  Score=255.49  Aligned_cols=157  Identities=19%  Similarity=0.234  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc--ccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE--TGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||++||+ ||||||+|||++.++.+||+|||+++.......  .......+||+.|+|||++.+..
T Consensus       160 ~~~~~~qil~al~ylH~~~ii-HRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~  238 (398)
T 4b99_A          160 VRYFLYQLLRGLKYMHSAQVI-HRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLH  238 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHCcCc-CCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCC
Confidence            568999999999999999998 999999999999999999999999986543221  22335678999999999987754


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCC--------------------CCCC-------C
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR--------------------PDTS-------S  155 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~--------------------p~~~-------~  155 (423)
                        .++.++||||+||++|||++|+.||.+  .+..+.+..+.......                    |...       .
T Consensus       239 --~~~~~~DiWSlG~il~ell~G~~pF~g--~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (398)
T 4b99_A          239 --EYTQAIDLWSVGCIFGEMLARRQLFPG--KNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVY  314 (398)
T ss_dssp             --CCCTHHHHHHHHHHHHHHHHTSCSSCC--SSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHS
T ss_pred             --CCCChhheehhHHHHHHHHHCCCCCCC--CCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhC
Confidence              248999999999999999999999974  34444454443211100                    0000       1


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ..+++++.+|+.+||..||.+|||+.+++++
T Consensus       315 ~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          315 PGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             TTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             CCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            2467899999999999999999999998753

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.96  E-value=4.9e-29  Score=247.03  Aligned_cols=157  Identities=16%  Similarity=0.180  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-ccEEEeccCCcccccCCCcc-----------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDET-----------------------   80 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-~~vKL~DFGla~~~~~~~~~-----------------------   80 (423)
                      ...++.||+.||+|||++||+ ||||||+|||++.+ +.+||+|||+|+........                       
T Consensus       119 ~~~~~~qll~al~ylH~~gIi-HRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (361)
T 4f9c_A          119 VREYMLNLFKALKRIHQFGIV-HRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICL  197 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC------------------
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccc
Confidence            568999999999999999998 99999999999876 89999999999754322110                       


Q ss_pred             ---cccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh-------------
Q psy1840          81 ---GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-------------  144 (423)
Q Consensus        81 ---~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~-------------  144 (423)
                         ......+||+.|+|||++.+..  .++.++||||+||++|||++|+.||..... ..+.+..+.             
T Consensus       198 ~~~~~~~~~~GT~~Y~APE~l~~~~--~y~~~~DiWSlG~il~ell~G~~Pf~~~~~-~~~~l~~I~~~~G~~~~~~~~~  274 (361)
T 4f9c_A          198 SRRQQVAPRAGTPGFRAPEVLTKCP--NQTTAIDMWSAGVIFLSLLSGRYPFYKASD-DLTALAQIMTIRGSRETIQAAK  274 (361)
T ss_dssp             --------CCCCGGGCCHHHHTTCS--CCCTHHHHHHHHHHHHHHHHTCSSSSCCSS-HHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cccccccccccCccccCHHHHcCCC--CCCCccchhhhHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHhcCCccchhhhh
Confidence               1123457999999999997753  248999999999999999999999964322 222222111             


Q ss_pred             -------------------------cCCCCCCC------------CCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         145 -------------------------QGSGLRPD------------TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       145 -------------------------~~~~~~p~------------~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                                               ......|.            .....+++++.+|+.+||+.||.+|||+.++++
T Consensus       275 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~  352 (361)
T 4f9c_A          275 TFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALL  352 (361)
T ss_dssp             HTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             hccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                                     00000010            112356889999999999999999999999875

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.96  E-value=5.6e-29  Score=250.06  Aligned_cols=179  Identities=16%  Similarity=0.223  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC---CccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS---RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~---~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.   ++.+||+|||+++......   ......||+.|+|||++.+.
T Consensus       163 ~~~i~~qi~~aL~~LH~~~iv-HrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~  238 (400)
T 1nxk_A          163 ASEIMKSIGEAIQYLHSINIA-HRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN---SLTTPCYTPYYVAPEVLGPE  238 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESSSSTTCCEEECCCTTCEECC--------------CTTCCGGGSCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCcCcceEEEecCCCCccEEEEecccccccCCCC---ccccCCCCCCccCHhhcCCC
Confidence            679999999999999999988 9999999999997   7899999999987643221   12355789999999999776


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC--hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      .+   +.++|||||||++|||++|..||......  .......+..+....+......++.++.+||.+||+.||++|||
T Consensus       239 ~~---~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt  315 (400)
T 1nxk_A          239 KY---DKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT  315 (400)
T ss_dssp             CS---SSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCC
T ss_pred             CC---CCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcC
Confidence            55   89999999999999999999999653221  11234455555444444334568999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCChHHHHHHHHHHhh
Q psy1840         180 LRFVHHKLKEMNAGLKANIFDNMLAIMEKYA  210 (423)
Q Consensus       180 ~~~I~~~L~~i~~~~~~~~~d~~~~~~e~~~  210 (423)
                      +.++++....................++++.
T Consensus       316 ~~eil~hp~~~~~~~~~~~~~~~~~~~~~~~  346 (400)
T 1nxk_A          316 ITEFMNHPWIMQSTKVPQTPLHTSRVLKEDK  346 (400)
T ss_dssp             HHHHHHSHHHHTTTTSCCCBCSHHHHHHHC-
T ss_pred             HHHHhcCccccCCCCCCCCccccchhhhhhh
Confidence            9999987554443333333333344444443

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.95  E-value=1.3e-28  Score=244.82  Aligned_cols=159  Identities=27%  Similarity=0.458  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++...............+++.|+|||++.+..+ 
T Consensus       205 ~~~i~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-  282 (370)
T 2psq_A          205 LVSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVY-  282 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCC-
Confidence            678999999999999999988 999999999999999999999999886544333223334556788999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||...  ...++...+..+..  +.. +..++.++.+++.+||+.||++||++.++
T Consensus       283 --~~~~DvwslG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~--~~~-~~~~~~~l~~li~~~l~~dP~~Rpt~~el  355 (370)
T 2psq_A          283 --THQSDVWSFGVLMWEIFTLGGSPYPGI--PVEELFKLLKEGHR--MDK-PANCTNELYMMMRDCWHAVPSQRPTFKQL  355 (370)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCC--CCC-CTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CcHHHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHHHHhcCCC--CCC-CCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              899999999999999999 99999753  44566666665532  222 23688999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       356 l~~L~~il~  364 (370)
T 2psq_A          356 VEDLDRILT  364 (370)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.95  E-value=8e-29  Score=259.69  Aligned_cols=153  Identities=19%  Similarity=0.314  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC--ccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR--WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~--~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||+++++ ||||||+|||++.+  +.+||+|||+++......   .....+||+.|+|||++.+..
T Consensus       257 ~~~~~~qi~~al~ylH~~~ii-HRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~---~~~~~~GT~~y~APEv~~~~~  332 (573)
T 3uto_A          257 AVEYMRQVCKGLCHMHENNYV-HLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ---SVKVTTGTAEFAAPEVAEGKP  332 (573)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS---EEEEECSSGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eccCChhhccccCCCCCCEEEeeccceeEccCCC---ceeeeEECccccCHHHhCCCC
Confidence            578999999999999999998 99999999999854  899999999998764332   224568999999999999876


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.++||||+||++|||++|..||.+  .+..+.+..+..+....+......+++++.+||.+||+.||.+|||+.+
T Consensus       333 y---~~~~DiWSlGvilyeml~G~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e  407 (573)
T 3uto_A          333 V---GYYTDMWSVGVLSYILLSGLSPFGG--ENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQ  407 (573)
T ss_dssp             B---CHHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             C---CcHHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            5   8999999999999999999999974  4567788888876655444444578999999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      ++++
T Consensus       408 ~l~H  411 (573)
T 3uto_A          408 ALEH  411 (573)
T ss_dssp             HHHS
T ss_pred             HhcC
Confidence            8763

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.95  E-value=2.4e-28  Score=233.88  Aligned_cols=165  Identities=28%  Similarity=0.464  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++................|++.|+|||.+......
T Consensus       122 ~~~i~~qi~~~L~~lH~~~i~-H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  200 (289)
T 3og7_A          122 LIDIARQTARGMDYLHAKSII-HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSN  200 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----C
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCC
Confidence            679999999999999999998 9999999999999999999999998755432222233445789999999998743222


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC-CCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~-~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      .++.++||||||+++|+|++|+.||.... ....+...+..+... ........+++.+.+++.+||+.||++|||+.++
T Consensus       201 ~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~el  279 (289)
T 3og7_A          201 PYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRI  279 (289)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCTTSSCC-CHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCcccchHHHHHHHHHHHHCCCCccccc-hHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHH
Confidence            34889999999999999999999997532 344555555543322 1122234688999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy1840         184 HHKLKEMN  191 (423)
Q Consensus       184 ~~~L~~i~  191 (423)
                      ++.|+++.
T Consensus       280 l~~L~~l~  287 (289)
T 3og7_A          280 LAEIEELA  287 (289)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99998775

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.95  E-value=2e-28  Score=238.64  Aligned_cols=159  Identities=23%  Similarity=0.410  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       117 ~~~~~~qi~~~l~~lH~~~iv-H~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  194 (325)
T 3kex_A          117 LLNWGVQIAKGMYYLEEHGMV-HRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKY-  194 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCCC-CCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCC-
Confidence            689999999999999999998 999999999999999999999999987654433333344567778999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||...  ...++...+..+.....   ...++.++.+++.+||+.||.+||++.++
T Consensus       195 --~~~~Di~slG~~l~el~~~g~~p~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~dp~~Rps~~el  267 (325)
T 3kex_A          195 --THQSDVWSYGVTVWELMTFGAEPYAGL--RLAEVPDLLEKGERLAQ---PQICTIDVYMVMVKCWMIDENIRPTFKEL  267 (325)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTTTS--CTTHHHHHHHTTCBCCC---CTTBCTTTTHHHHHHTCSCTTTSCCHHHH
T ss_pred             --ChhhHhHHhHHHHHHHHhCCCCCcccc--CHHHHHHHHHcCCCCCC---CCcCcHHHHHHHHHHcCCChhhCcCHHHH
Confidence              899999999999999999 99999754  33455566655432221   23477889999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       268 ~~~l~~~~~  276 (325)
T 3kex_A          268 ANEFTRMAR  276 (325)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999988754

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.95  E-value=1.3e-28  Score=240.19  Aligned_cols=159  Identities=22%  Similarity=0.403  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++...............++..|+|||.+.+..+ 
T Consensus       119 ~~~~~~qi~~~l~~LH~~~iv-H~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-  196 (327)
T 3poz_A          119 LLNWCVQIAKGMNYLEDRRLV-HRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY-  196 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHhhCCee-CCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCC-
Confidence            689999999999999999998 999999999999999999999999886644333333334456778999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||...  ...++...+..+....   ....++..+.+++.+||+.||++||++.++
T Consensus       197 --~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~el  269 (327)
T 3poz_A          197 --THQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSILEKGERLP---QPPICTIDVYMIMVKCWMIDADSRPKFREL  269 (327)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCCC---CCTTBCHHHHHHHHHHTCSCGGGSCCHHHH
T ss_pred             --CchhhhhhhHHHHHHHHhcCCCCccCC--CHHHHHHHHHcCCCCC---CCccCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence              899999999999999999 99999743  3445555555543221   123578999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       270 l~~l~~~~~  278 (327)
T 3poz_A          270 IIEFSKMAR  278 (327)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999988764

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.95  E-value=2.1e-28  Score=234.50  Aligned_cols=168  Identities=13%  Similarity=0.224  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc-----EEEeccCCcccccCCCcc-----cccccccCCccc
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV-----LQIADFGLHAFKAGQDET-----GQERKLRRRKLY   92 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~-----vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y   92 (423)
                      .....++.||+.||.|||++|++ ||||||+||+++.++.     +||+|||++.........     .......||+.|
T Consensus       106 ~~~~~i~~qi~~~l~~lH~~~iv-H~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y  184 (298)
T 1csn_A          106 KTVAMAAKQMLARVQSIHEKSLV-YRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARY  184 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEE-CCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEe-cCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCccc
Confidence            33789999999999999999988 9999999999987766     999999998865433221     122455789999


Q ss_pred             cCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCC-CChHHHHHHHhcCCCCCC-CCCCCCchHHHHHHHHHhh
Q psy1840          93 KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR-MTDEEIITSVTQGSGLRP-DTSSLDCAPSIIACMRTCW  170 (423)
Q Consensus        93 ~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~-~~~~~i~~~i~~~~~~~p-~~~~~~~~~~l~~Li~~C~  170 (423)
                      +|||.+.+..+   +.++||||||+++|||++|+.||.... ....+....+.......+ ......+++++.+++.+||
T Consensus       185 ~aPE~~~~~~~---~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  261 (298)
T 1csn_A          185 MSINTHLGREQ---SRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYAR  261 (298)
T ss_dssp             CCHHHHTTCCC---CHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCchhhcCCCC---ChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHh
Confidence            99999987655   899999999999999999999997643 233444444432211111 1112357899999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHhhhc
Q psy1840         171 EEDPELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       171 ~~dP~~RPt~~~I~~~L~~i~~~~  194 (423)
                      +.||++||++.+|.+.|+.+....
T Consensus       262 ~~dp~~RP~~~~l~~~l~~~~~~~  285 (298)
T 1csn_A          262 NLAFDATPDYDYLQGLFSKVLERL  285 (298)
T ss_dssp             HCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCcccCCCHHHHHHHHHHHHHhc
Confidence            999999999999999998886643

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.95  E-value=1.2e-28  Score=245.62  Aligned_cols=161  Identities=25%  Similarity=0.466  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++...............++..|+|||.+.+..+
T Consensus       214 ~~~~~~~qi~~~l~~LH~~~iv-HrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  292 (377)
T 3cbl_A          214 TLLQMVGDAAAGMEYLESKCCI-HRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRY  292 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCcC-CcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCC
Confidence            3679999999999999999988 999999999999999999999999875432221111122234567999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||..  ....++...+..+....  . +..+++++.++|.+||+.||++|||+.+
T Consensus       293 ---~~~~DvwslG~il~el~t~g~~p~~~--~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~li~~cl~~dP~~Rps~~~  364 (377)
T 3cbl_A          293 ---SSESDVWSFGILLWETFSLGASPYPN--LSNQQTREFVEKGGRLP--C-PELCPDAVFRLMEQCWAYEPGQRPSFST  364 (377)
T ss_dssp             ---EHHHHHHHHHHHHHHHHTTSCCSSTT--SCHHHHHHHHHTTCCCC--C-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCCC--C-CCCCCHHHHHHHHHHcCCCchhCcCHHH
Confidence               899999999999999998 9999974  45566666666553221  1 2358899999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      |++.|+.+...
T Consensus       365 i~~~L~~i~~~  375 (377)
T 3cbl_A          365 IYQELQSIRKR  375 (377)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988653

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.95  E-value=7.2e-28  Score=233.45  Aligned_cols=159  Identities=30%  Similarity=0.574  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSE--IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .+.++.||+.||.|||+.|  ++ ||||||+||+++.++.+||+|||+++......  .......||+.|+|||.+.+..
T Consensus       139 ~~~i~~qi~~aL~~LH~~~~~iv-H~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~  215 (309)
T 3p86_A          139 RLSMAYDVAKGMNYLHNRNPPIV-HRNLKSPNLLVDKKYTVKVCDFGLSRLKASTF--LSSKSAAGTPEWMAPEVLRDEP  215 (309)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCC-CTTCCGGGEEECTTCCEEECCCC-------------------CCTTSCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEE-CCCCChhhEEEeCCCcEEECCCCCCccccccc--cccccCCCCccccChhhhcCCC
Confidence            6789999999999999999  88 99999999999999999999999987543221  1223457899999999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.++|||||||++|||++|+.||..  ....+....+..... .+. .+..+++.+.+++.+||+.||.+|||+.+
T Consensus       216 ~---~~~~DiwslG~il~elltg~~Pf~~--~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~li~~~l~~dP~~Rps~~~  288 (309)
T 3p86_A          216 S---NEKSDVYSFGVILWELATLQQPWGN--LNPAQVVAAVGFKCK-RLE-IPRNLNPQVAAIIEGCWTNEPWKRPSFAT  288 (309)
T ss_dssp             C---CTTHHHHHHHHHHHHHHHCCCTTTT--SCHHHHHHHHHHSCC-CCC-CCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             C---CchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcCC-CCC-CCccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            5   8999999999999999999999974  445566655543221 111 22468899999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      |++.|+.+...
T Consensus       289 ll~~L~~~~~~  299 (309)
T 3p86_A          289 IMDLLRPLIKS  299 (309)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            99999888654

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.95  E-value=2.3e-28  Score=256.89  Aligned_cols=150  Identities=19%  Similarity=0.268  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++||| ||||||+||||+.+|.+||+|||+|+.....    ...+.+||+.|||||++..+.  
T Consensus       294 a~~y~~qIl~aL~yLH~~gIi-HRDLKPeNILld~~G~vKL~DFGlA~~~~~~----~~~t~~GTp~YmAPEvl~~~~--  366 (689)
T 3v5w_A          294 MRFYAAEIILGLEHMHNRFVV-YRDLKPANILLDEHGHVRISDLGLACDFSKK----KPHASVGTHGYMAPEVLQKGV--  366 (689)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECSSC----CCCSCCSCGGGCCHHHHSTTC--
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCchHHeEEeCCCCEEecccceeeecCCC----CCCCccCCcCccCHHHHhCCC--
Confidence            467899999999999999998 9999999999999999999999999865432    224578999999999996532  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC-CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR-MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD----  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~-~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt----  179 (423)
                      .++.++|+||+||++|||++|..||.+.. ....++...+.......|    ..+++++.+||.+||+.||.+|++    
T Consensus       367 ~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p----~~~S~~a~dLI~~lL~~dP~~Rl~~~~~  442 (689)
T 3v5w_A          367 AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELP----DSFSPELRSLLEGLLQRDVNRRLGCLGR  442 (689)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSCGGGCTTCSSS
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCC----ccCCHHHHHHHHHHccCCHhHCCCCCCC
Confidence            23899999999999999999999997532 234455666655443333    357899999999999999999998    


Q ss_pred             -HHHHHH
Q psy1840         180 -LRFVHH  185 (423)
Q Consensus       180 -~~~I~~  185 (423)
                       +.+|++
T Consensus       443 ga~ei~~  449 (689)
T 3v5w_A          443 GAQEVKE  449 (689)
T ss_dssp             THHHHTT
T ss_pred             CHHHHhc
Confidence             566654

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.95  E-value=9.5e-28  Score=239.35  Aligned_cols=162  Identities=27%  Similarity=0.435  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++...............+++.|+|||++.+..+ 
T Consensus       193 ~~~i~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-  270 (382)
T 3tt0_A          193 LVSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY-  270 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCC-
Confidence            689999999999999999998 999999999999999999999999886544333233344566788999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....++...+..+.....   ...+++++.+++.+||+.||++|||+.+|
T Consensus       271 --~~~~DiwslG~il~ellt~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~el  343 (382)
T 3tt0_A          271 --THQSDVWSFGVLLWEIFTLGGSPYPG--VPVEELFKLLKEGHRMDK---PSNCTNELYMMMRDCWHAVPSQRPTFKQL  343 (382)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHTTCCCCC---CSSCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CchhHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence              899999999999999999 9999974  456677777766533222   24688999999999999999999999999


Q ss_pred             HHHHHHHhhhcC
Q psy1840         184 HHKLKEMNAGLK  195 (423)
Q Consensus       184 ~~~L~~i~~~~~  195 (423)
                      ++.|+.+.....
T Consensus       344 l~~L~~~~~~~~  355 (382)
T 3tt0_A          344 VEDLDRIVALTS  355 (382)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHh
Confidence            999998876543

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.95  E-value=2.8e-28  Score=238.47  Aligned_cols=163  Identities=27%  Similarity=0.480  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       175 ~~~~i~~qi~~~l~~LH~~~iv-H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  253 (343)
T 1luf_A          175 EQLCIARQVAAGMAYLSERKFV-HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRY  253 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-cCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCc
Confidence            3688999999999999999998 999999999999999999999999876533222222234567888999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||..  ....++...+..+....   .+..++..+.+++.+||+.||++||++.+
T Consensus       254 ---~~~~Di~slG~il~el~t~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~~  325 (343)
T 1luf_A          254 ---TTESDVWAYGVVLWEIFSYGLQPYYG--MAHEEVIYYVRDGNILA---CPENCPLELYNLMRLCWSKLPADRPSFCS  325 (343)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCTTTT--SCHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CcccccHHHHHHHHHHHhcCCCcCCC--CChHHHHHHHhCCCcCC---CCCCCCHHHHHHHHHHcccCcccCCCHHH
Confidence               899999999999999999 9999974  45667777777654322   22368899999999999999999999999


Q ss_pred             HHHHHHHHhhhcC
Q psy1840         183 VHHKLKEMNAGLK  195 (423)
Q Consensus       183 I~~~L~~i~~~~~  195 (423)
                      |++.|+.+.....
T Consensus       326 ~~~~L~~~~~~~~  338 (343)
T 1luf_A          326 IHRILQRMCERAE  338 (343)
T ss_dssp             HHHHHHHTTC---
T ss_pred             HHHHHHHHHhhhh
Confidence            9999998876543

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.95  E-value=1e-28  Score=246.62  Aligned_cols=159  Identities=17%  Similarity=0.239  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-------------------cccc
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-------------------TGQE   83 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-------------------~~~~   83 (423)
                      .....++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++.......                   ....
T Consensus       109 ~~~~~i~~qi~~~L~~LH~~~iv-HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (388)
T 3oz6_A          109 VHKQYVVYQLIKVIKYLHSGGLL-HRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPIL  187 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEE-eCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccc
Confidence            34678999999999999999988 999999999999999999999999876432110                   1112


Q ss_pred             ccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCC------------
Q psy1840          84 RKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP------------  151 (423)
Q Consensus        84 ~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p------------  151 (423)
                      ....||+.|+|||++.+..  .++.++|||||||++|||++|+.||.+.  +..+.+..+.......+            
T Consensus       188 ~~~~gt~~y~aPE~~~~~~--~~~~~~DiwSlG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  263 (388)
T 3oz6_A          188 TDYVATRWYRAPEILLGST--KYTKGIDMWSLGCILGEILCGKPIFPGS--STMNQLERIIGVIDFPSNEDVESIQSPFA  263 (388)
T ss_dssp             --CCCGGGGCCHHHHTTCC--CCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHHTSCCSSH
T ss_pred             cCCcccCCcCCHHHhcCCC--CCCChhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHhccCHHH
Confidence            3457899999999997632  3489999999999999999999999753  33333333321100000            


Q ss_pred             ---------------C----------------CCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         152 ---------------D----------------TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       152 ---------------~----------------~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                     .                .....+++++.+|+.+||+.||++|||+.++++.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~H  329 (388)
T 3oz6_A          264 KTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKH  329 (388)
T ss_dssp             HHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             HHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCC
Confidence                           0                0112568899999999999999999999998764

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.95  E-value=4.9e-28  Score=233.62  Aligned_cols=161  Identities=25%  Similarity=0.433  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       151 ~~~~i~~qi~~~l~~lH~~~iv-H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  229 (314)
T 2ivs_A          151 DLISFAWQISQGMQYLAEMKLV-HRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIY  229 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCc-ccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCc
Confidence            3689999999999999999988 999999999999999999999999876544333223334556788999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||...  ...++...+..+...  . ....+++.+.+++.+||+.||++||++.+
T Consensus       230 ---~~~~Di~slG~il~el~t~g~~p~~~~--~~~~~~~~~~~~~~~--~-~~~~~~~~~~~li~~~l~~dp~~Rps~~~  301 (314)
T 2ivs_A          230 ---TTQSDVWSFGVLLWEIVTLGGNPYPGI--PPERLFNLLKTGHRM--E-RPDNCSEEMYRLMLQCWKQEPDKRPVFAD  301 (314)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCCC--C-CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHhhcCCcC--C-CCccCCHHHHHHHHHHccCChhhCcCHHH
Confidence               899999999999999999 99999743  345566666554322  1 22467899999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      +++.|+.+...
T Consensus       302 l~~~l~~~~~~  312 (314)
T 2ivs_A          302 ISKDLEKMMVK  312 (314)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999887654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.95  E-value=5.4e-28  Score=234.82  Aligned_cols=161  Identities=25%  Similarity=0.455  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+ 
T Consensus       139 ~~~i~~qi~~al~~LH~~~iv-H~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  216 (323)
T 3qup_A          139 LVRFMVDIACGMEYLSSRNFI-HRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLY-  216 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHcCCcc-cCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCC-
Confidence            679999999999999999998 999999999999999999999999876543332222234456778999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  ....++...+..+....   ....+++++.+++.+||+.||++|||+.++
T Consensus       217 --~~~~Di~slG~il~ell~~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  289 (323)
T 3qup_A          217 --TVHSDVWAFGVTMWEIMTRGQTPYAG--IENAEIYNYLIGGNRLK---QPPECMEEVYDLMYQCWSADPKQRPSFTCL  289 (323)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTTT--CCGGGHHHHHHTTCCCC---CCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred             --CCccchhhHHHHHHHHHhCCCCCccc--cChHHHHHHHhcCCCCC---CCCccCHHHHHHHHHHccCChhhCcCHHHH
Confidence              899999999999999999 8999974  33455566665543221   123678999999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q psy1840         184 HHKLKEMNAGL  194 (423)
Q Consensus       184 ~~~L~~i~~~~  194 (423)
                      ++.|+++....
T Consensus       290 ~~~l~~~l~~~  300 (323)
T 3qup_A          290 RMELENILGHL  300 (323)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.95  E-value=2.8e-28  Score=237.41  Aligned_cols=167  Identities=24%  Similarity=0.343  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHhC----------CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDS----------EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA   94 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~----------~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~A   94 (423)
                      ...++.|++.||.|||+.          |++ ||||||+||+++.++.+||+|||+++...............||+.|+|
T Consensus       123 ~~~i~~qi~~al~~LH~~~~~l~~~~~~~iv-H~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~a  201 (322)
T 3soc_A          123 LCHIAETMARGLAYLHEDIPGLKDGHKPAIS-HRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMA  201 (322)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEETTEEECEEE-CSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccCCCEE-eCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccC
Confidence            689999999999999999          988 999999999999999999999999976654433333345678999999


Q ss_pred             CccccCCCC--CCCCCccchHHHHHHHHHHHhCCCCCCCCCC--------------ChHHHHHHHhcCCCCCCCCC----
Q psy1840          95 PELLRQPHL--PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM--------------TDEEIITSVTQGSGLRPDTS----  154 (423)
Q Consensus        95 PE~l~~~~~--~~~s~ksDVyS~Giil~elltg~~Pf~~~~~--------------~~~~i~~~i~~~~~~~p~~~----  154 (423)
                      ||++.+...  ...+.++|||||||++|||++|+.||.....              ....+...+... ..+|...    
T Consensus       202 PE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  280 (322)
T 3soc_A          202 PEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHK-KKRPVLRDYWQ  280 (322)
T ss_dssp             HHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTS-CCCCCCCGGGG
T ss_pred             HhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcc-cCCCCcccccc
Confidence            999986321  1225688999999999999999999964311              223333333332 2223222    


Q ss_pred             CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhh
Q psy1840         155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       155 ~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~~  193 (423)
                      ...+++++.+++.+||+.||++|||+.+|++.|+.+...
T Consensus       281 ~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          281 KHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             SSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            123466799999999999999999999999999988764

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.95  E-value=4.4e-28  Score=236.73  Aligned_cols=160  Identities=23%  Similarity=0.415  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++...............+++.|+|||.+.+..+ 
T Consensus       119 ~~~i~~qi~~aL~~LH~~~iv-H~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-  196 (327)
T 3lzb_A          119 LLNWCVQIAKGMNYLEDRRLV-HRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY-  196 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHhhCCCc-CCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCC-
Confidence            679999999999999999998 999999999999999999999999886543333322334456778999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||...  ...++...+..+....   ....++.++.+++.+||+.||.+||++.++
T Consensus       197 --~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~el  269 (327)
T 3lzb_A          197 --THQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSILEKGERLP---QPPICTIDVYMIMRKCWMIDADSRPKFREL  269 (327)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCCC---CCTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --ChHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHcCCCCC---CCccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence              899999999999999999 99999753  3445555555543222   123578999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ++.|+.+...
T Consensus       270 l~~L~~~~~~  279 (327)
T 3lzb_A          270 IIEFSKMARD  279 (327)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHhC
Confidence            9999888653

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.95  E-value=7.1e-28  Score=237.23  Aligned_cols=162  Identities=25%  Similarity=0.443  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................+|+.|+|||++.+..+
T Consensus       194 ~~~~~~~ql~~aL~~LH~~~iv-H~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  272 (359)
T 3vhe_A          194 HLICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY  272 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCC
Confidence            3689999999999999999998 999999999999999999999999886544333333345567888999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||..... ...+...+..+....   .+..+++++.+++.+||+.||.+|||+.+
T Consensus       273 ---~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dP~~Rps~~e  345 (359)
T 3vhe_A          273 ---TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEGTRMR---APDYTTPEMYQTMLDCWHGEPSQRPTFSE  345 (359)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHHTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhhhhhHHHHHHHHHhcCCCCCCccch-hHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHccCChhhCCCHHH
Confidence               899999999999999998 9999976433 344445555443222   12357899999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      |++.|+.+...
T Consensus       346 ll~~L~~~~~~  356 (359)
T 3vhe_A          346 LVEHLGNLLQA  356 (359)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.2e-28  Score=241.66  Aligned_cols=160  Identities=23%  Similarity=0.456  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc---cEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~---~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      .+.++.||+.||.|||++|++ ||||||+|||++.++   .+||+|||+++...............+|+.|+|||.+.+.
T Consensus       183 ~~~i~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  261 (367)
T 3l9p_A          183 LLHVARDIACGCQYLEENHFI-HRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEG  261 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhCCee-CCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCC
Confidence            678999999999999999998 999999999999554   5999999998754322222222345678889999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .+   +.++|||||||++|||++ |..||..  ....++...+..+....+   ...++..+.+++.+||+.||++||++
T Consensus       262 ~~---~~~~DvwslG~il~ellt~g~~pf~~--~~~~~~~~~i~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~  333 (367)
T 3l9p_A          262 IF---TSKTDTWSFGVLLWEIFSLGYMPYPS--KSNQEVLEFVTSGGRMDP---PKNCPGPVYRIMTQCWQHQPEDRPNF  333 (367)
T ss_dssp             CC---CHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CC---CcHHHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHcCCCHhHCcCH
Confidence            55   899999999999999998 9999974  456777777776543322   23678999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy1840         181 RFVHHKLKEMNAG  193 (423)
Q Consensus       181 ~~I~~~L~~i~~~  193 (423)
                      .+|++.|+.+...
T Consensus       334 ~eil~~l~~~~~~  346 (367)
T 3l9p_A          334 AIILERIEYCTQD  346 (367)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999887653

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=5.1e-28  Score=237.02  Aligned_cols=166  Identities=23%  Similarity=0.354  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       173 ~~~~i~~qi~~aL~~LH~~~iv-H~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  251 (344)
T 1rjb_A          173 DLLCFAYQVAKGMEFLEFKSCV-HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIY  251 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-ETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-cCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCC
Confidence            3689999999999999999998 999999999999999999999999876543333222334556788999999977654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||..... ...+...+..+.  .+.. +..+++++.+++.+||+.||.+||++.+
T Consensus       252 ---~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~~  324 (344)
T 1rjb_A          252 ---TIKSDVWSYGILLWEIFSLGVNPYPGIPV-DANFYKLIQNGF--KMDQ-PFYATEEIYIIMQSCWAFDSRKRPSFPN  324 (344)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHTTC--CCCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---ChhHhHHHHHHHHHHHHcCCCCCcccCCc-HHHHHHHHhcCC--CCCC-CCCCCHHHHHHHHHHcCCCchhCcCHHH
Confidence               899999999999999998 9999976433 233444444432  2221 2357899999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCC
Q psy1840         183 VHHKLKEMNAGLKAN  197 (423)
Q Consensus       183 I~~~L~~i~~~~~~~  197 (423)
                      +++.|+.+.......
T Consensus       325 l~~~l~~~~~~~~~~  339 (344)
T 1rjb_A          325 LTSFLGCQLADAEEA  339 (344)
T ss_dssp             HHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999887655443

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.95  E-value=3.9e-28  Score=232.10  Aligned_cols=167  Identities=14%  Similarity=0.238  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE---cCCccEEEeccCCcccccCCCcc-----cccccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLI---DSRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAP   95 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl---d~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~AP   95 (423)
                      ....++.||+.||.|||++|++ ||||||+||++   +.++.+||+|||++.........     .......+++.|+||
T Consensus       106 ~~~~i~~qi~~~l~~LH~~~iv-H~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  184 (296)
T 4hgt_A          106 TVLLLADQMISRIEYIHSKNFI-HRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASI  184 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCH
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccch
Confidence            3689999999999999999988 99999999999   78999999999998765433221     122355789999999


Q ss_pred             ccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC-hHHHHHHHhcCCCCCC-CCCCCCchHHHHHHHHHhhhcC
Q psy1840          96 ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-DEEIITSVTQGSGLRP-DTSSLDCAPSIIACMRTCWEED  173 (423)
Q Consensus        96 E~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-~~~i~~~i~~~~~~~p-~~~~~~~~~~l~~Li~~C~~~d  173 (423)
                      |.+.+..+   +.++|||||||++|||++|+.||...... ..+.+..+.......+ ......+++++.+++.+||+.|
T Consensus       185 E~~~~~~~---~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~  261 (296)
T 4hgt_A          185 NTHLGIEQ---SRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLR  261 (296)
T ss_dssp             HHHTTCCC---CHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSC
T ss_pred             HHhcCCCC---CchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcC
Confidence            99987665   89999999999999999999999753221 1122222221111111 1111357889999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhc
Q psy1840         174 PELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       174 P~~RPt~~~I~~~L~~i~~~~  194 (423)
                      |++|||+.+|++.|+.+....
T Consensus       262 p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          262 FDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999998887644

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.95  E-value=2.9e-28  Score=241.38  Aligned_cols=166  Identities=13%  Similarity=0.161  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc--CCccEEEeccCCcccccCCCcc-----cccccccCCccccCCc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLID--SRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAPE   96 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld--~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE   96 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+|||++  .++.+||+|||+++........     .......||+.|+|||
T Consensus       153 ~~~~i~~qi~~~l~~lH~~~ii-HrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  231 (364)
T 3op5_A          153 TVLQLSLRILDILEYIHEHEYV-HGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSID  231 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCeE-EecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHH
Confidence            3789999999999999999998 999999999999  8899999999998765432211     1113445899999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CC----CCCCCCCCCchHHHHHHHHHhh
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG----LRPDTSSLDCAPSIIACMRTCW  170 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~----~~p~~~~~~~~~~l~~Li~~C~  170 (423)
                      .+.+..+   +.++|||||||++|||++|+.||....... .........  ..    ..+......++.++.+++..||
T Consensus       232 ~~~~~~~---~~~~Di~slG~~l~el~~g~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  307 (364)
T 3op5_A          232 AHNGVAP---SRRGDLEILGYCMIQWLTGHLPWEDNLKDP-KYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVK  307 (364)
T ss_dssp             HHTTCCC---CHHHHHHHHHHHHHHHHHSCCTTGGGTTCH-HHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHH
T ss_pred             HhCCCCC---CchhhHHHHHHHHHHHHhCCCCccccccCH-HHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHh
Confidence            9987655   899999999999999999999997533222 221111100  00    0001112357899999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHhhhc
Q psy1840         171 EEDPELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       171 ~~dP~~RPt~~~I~~~L~~i~~~~  194 (423)
                      +.||++||++.+|++.|+.+....
T Consensus       308 ~~~p~~RP~~~~l~~~l~~~~~~~  331 (364)
T 3op5_A          308 LLDYTEKPLYENLRDILLQGLKAI  331 (364)
T ss_dssp             TCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHc
Confidence            999999999999999998876543

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.95  E-value=6.2e-28  Score=230.93  Aligned_cols=167  Identities=15%  Similarity=0.242  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE---cCCccEEEeccCCcccccCCCcc-----cccccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLI---DSRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAP   95 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl---d~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~AP   95 (423)
                      ....++.||+.||.|||++|++ ||||||+||++   +.++.+||+|||++.........     .......|++.|+||
T Consensus       106 ~~~~i~~qi~~~l~~lH~~~iv-H~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  184 (296)
T 3uzp_A          106 TVLLLADQMISRIEYIHSKNFI-HRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASI  184 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCH
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-eCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCCh
Confidence            3689999999999999999988 99999999999   58899999999998765433221     112455789999999


Q ss_pred             ccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcCCCCCC-CCCCCCchHHHHHHHHHhhhcC
Q psy1840          96 ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQGSGLRP-DTSSLDCAPSIIACMRTCWEED  173 (423)
Q Consensus        96 E~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~~~~~p-~~~~~~~~~~l~~Li~~C~~~d  173 (423)
                      |.+.+..+   +.++|||||||++|||++|+.||..... ...+....+.......+ ......+++++.+++.+||+.|
T Consensus       185 E~~~~~~~---~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  261 (296)
T 3uzp_A          185 NTHLGIEQ---SRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLR  261 (296)
T ss_dssp             HHHTTCCC---CHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSC
T ss_pred             hhhcCCCC---CcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcC
Confidence            99987665   8999999999999999999999975422 11222222221110111 1112357899999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhhc
Q psy1840         174 PELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       174 P~~RPt~~~I~~~L~~i~~~~  194 (423)
                      |++|||+.+|++.|+.+....
T Consensus       262 p~~Rps~~~l~~~l~~~~~~~  282 (296)
T 3uzp_A          262 FDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHT
T ss_pred             cCcCCCHHHHHHHHHHHHHhc
Confidence            999999999999998887654

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.95  E-value=1.7e-27  Score=229.72  Aligned_cols=164  Identities=22%  Similarity=0.378  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       146 ~~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  224 (313)
T 1t46_A          146 DLLSFSYQVAKGMAFLASKNCI-HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVY  224 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCC
Confidence            3689999999999999999998 999999999999999999999999876654433222334456778999999877654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||...... ......+..+..  + .....++..+.+++.+||+.||.+|||+.+
T Consensus       225 ---~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  297 (313)
T 1t46_A          225 ---TFESDVWSYGIFLWELFSLGSSPYPGMPVD-SKFYKMIKEGFR--M-LSPEHAPAEMYDIMKTCWDADPLKRPTFKQ  297 (313)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCSSTTCCSS-HHHHHHHHHTCC--C-CCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---ChHHHHHHHHHHHHHHHhCCCCCCCcccch-hHHHHHhccCCC--C-CCcccCCHHHHHHHHHHcCCCchhCcCHHH
Confidence               899999999999999998 99999754332 333344443321  1 122357899999999999999999999999


Q ss_pred             HHHHHHHHhhhcC
Q psy1840         183 VHHKLKEMNAGLK  195 (423)
Q Consensus       183 I~~~L~~i~~~~~  195 (423)
                      +++.|+++.....
T Consensus       298 ll~~L~~~~~~~~  310 (313)
T 1t46_A          298 IVQLIEKQISEST  310 (313)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999988876543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.95  E-value=6.7e-28  Score=246.07  Aligned_cols=160  Identities=26%  Similarity=0.521  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+++++ ||||||+|||++.++.+||+|||+++...... ........++..|+|||.+....+ 
T Consensus       286 ~~~~~~qi~~~l~~LH~~~iv-HrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~-  362 (454)
T 1qcf_A          286 LIDFSAQIAEGMAFIEQRNYI-HRDLRAANILVSASLVCKIADFGLARVIEDNE-YTAREGAKFPIKWTAPEAINFGSF-  362 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-HHTTCSSSSCGGGSCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-CCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-eeccCCCcccccccCHHHhccCCC-
Confidence            578999999999999999998 99999999999999999999999987653221 111123345678999999986655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |+.||.+  .+..++...+..+...  .. +..+++++.++|.+||+.||++|||+.+|
T Consensus       363 --~~~~DvwslG~~l~el~t~g~~P~~~--~~~~~~~~~i~~~~~~--~~-~~~~~~~l~~li~~cl~~dp~~RPt~~~i  435 (454)
T 1qcf_A          363 --TIKSDVWSFGILLMEIVTYGRIPYPG--MSNPEVIRALERGYRM--PR-PENCPEELYNIMMRCWKNRPEERPTFEYI  435 (454)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHHTCCC--CC-CTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CcHHHHHhHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCC--CC-CCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence              899999999999999999 9999974  5567777777765322  11 24689999999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q psy1840         184 HHKLKEMNAGL  194 (423)
Q Consensus       184 ~~~L~~i~~~~  194 (423)
                      ++.|+.+....
T Consensus       436 ~~~L~~~~~~~  446 (454)
T 1qcf_A          436 QSVLDDFYTAT  446 (454)
T ss_dssp             HHHHHTSSSSS
T ss_pred             HHHHHHHHhcc
Confidence            99998876543

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.95  E-value=6.4e-28  Score=231.38  Aligned_cols=165  Identities=26%  Similarity=0.407  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHH--------hCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLH--------DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKA   94 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH--------~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~A   94 (423)
                      .+.++.|++.||.|||        +.+++ ||||||+||+++.++.+||+|||+++........  .......||+.|+|
T Consensus       107 ~~~i~~~i~~~l~~lH~~~~~~~~~~~iv-H~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a  185 (301)
T 3q4u_A          107 CLRIVLSIASGLAHLHIEIFGTQGKPAIA-HRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMA  185 (301)
T ss_dssp             HHHHHHHHHHHHHHHHSCBCSTTCBCEEE-CSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCCCee-cCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeC
Confidence            6899999999999999        88988 9999999999999999999999998765433221  11234478999999


Q ss_pred             CccccCCCCC---CCCCccchHHHHHHHHHHHhC----------CCCCCCCCC--ChHHHHHHHhcCCCCCCCCC----C
Q psy1840          95 PELLRQPHLP---RGTQKGDVYSFGLVLYEVIGR----------QGPWGHLRM--TDEEIITSVTQGSGLRPDTS----S  155 (423)
Q Consensus        95 PE~l~~~~~~---~~s~ksDVyS~Giil~elltg----------~~Pf~~~~~--~~~~i~~~i~~~~~~~p~~~----~  155 (423)
                      ||.+.+....   ..+.++|||||||++|||++|          ..||.....  ...............++..+    .
T Consensus       186 PE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (301)
T 3q4u_A          186 PEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFS  265 (301)
T ss_dssp             HHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGG
T ss_pred             hhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhcc
Confidence            9999875321   124789999999999999999          888854321  11222333322222333322    1


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM  190 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i  190 (423)
                      ..+++.+.+++.+||+.||++|||+.+|++.|+.+
T Consensus       266 ~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          266 DPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             SHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            34678899999999999999999999999999876

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.95  E-value=1.1e-27  Score=230.56  Aligned_cols=154  Identities=18%  Similarity=0.283  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||++|++ ||||||+||+++.++.+||+|||++........  ......||+.|+|||.+.+..+
T Consensus       117 ~~~~~~~qi~~~l~~lH~~~i~-H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~  193 (297)
T 3fxz_A          117 QIAAVCRECLQALEFLHSNQVI-HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAY  193 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCGGGCCHHHHHCSCB
T ss_pred             HHHHHHHHHHHHHHHHHhCCce-eCCCCHHHEEECCCCCEEEeeCCCceecCCccc--ccCCccCCcCccChhhhcCCCC
Confidence            3679999999999999999988 999999999999999999999999876543322  2245678999999999987765


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|||||||++|||++|..||...  ........+......... ....++..+.+++.+||+.||++|||+.++
T Consensus       194 ---~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~dp~~Rps~~el  267 (297)
T 3fxz_A          194 ---GPKVDIWSLGIMAIEMIEGEPPYLNE--NPLRALYLIATNGTPELQ-NPEKLSAIFRDFLNRCLEMDVEKRGSAKEL  267 (297)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHHCSCCCS-CGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ---CcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHhCCCCCCC-CccccCHHHHHHHHHHccCChhHCcCHHHH
Confidence               89999999999999999999999743  333444333332211111 123578899999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       268 l~h  270 (297)
T 3fxz_A          268 LQH  270 (297)
T ss_dssp             TTC
T ss_pred             hhC
Confidence            764

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.95  E-value=9.8e-28  Score=231.93  Aligned_cols=162  Identities=25%  Similarity=0.447  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       148 ~~~~i~~qi~~aL~~LH~~~iv-H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  226 (313)
T 3brb_A          148 TLLKFMVDIALGMEYLSNRNFL-HRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVY  226 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCC-CCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-cCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCc
Confidence            3689999999999999999998 999999999999999999999999876543322222234456778999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|+|++ |..||...  ...++...+..+...  . ....+++.+.+++.+||+.||.+||++.+
T Consensus       227 ---~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~~~~~~~--~-~~~~~~~~l~~li~~~l~~dp~~Rps~~~  298 (313)
T 3brb_A          227 ---TSKSDVWAFGVTMWEIATRGMTPYPGV--QNHEMYDYLLHGHRL--K-QPEDCLDELYEIMYSCWRTDPLDRPTFSV  298 (313)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCCC--C-CBTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             ---cchhhhHHHHHHHHHHHhcCCCCCccC--CHHHHHHHHHcCCCC--C-CCccccHHHHHHHHHHcCCChhhCcCHHH
Confidence               899999999999999999 88898743  344555555554322  1 12367899999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q psy1840         183 VHHKLKEMNAGL  194 (423)
Q Consensus       183 I~~~L~~i~~~~  194 (423)
                      +++.|+.+....
T Consensus       299 l~~~L~~l~~~l  310 (313)
T 3brb_A          299 LRLQLEKLLESL  310 (313)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999887643

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=233.02  Aligned_cols=162  Identities=26%  Similarity=0.472  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||+++........ .......+++.|+|||.+.+..
T Consensus       152 ~~~~i~~qi~~~L~~LH~~~iv-H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  230 (325)
T 3kul_A          152 QLVGMLRGVGAGMRYLSDLGYV-HRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRT  230 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-CCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCC
Confidence            3689999999999999999988 9999999999999999999999998865433221 1122334567899999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++||||||+++|||++ |..||..  ....++...+..+....   ....+++.+.+++.+||+.||++|||+.
T Consensus       231 ~---~~~~Di~slG~il~ell~~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~  302 (325)
T 3kul_A          231 F---SSASDVWSFGVVMWEVLAYGERPYWN--MTNRDVISSVEEGYRLP---APMGCPHALHQLMLDCWHKDRAQRPRFS  302 (325)
T ss_dssp             E---CHHHHHHHHHHHHHHHHTTSCCTTTT--SCHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             C---CcHHHHHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHHcCCCCC---CCCCcCHHHHHHHHHHccCChhhCcCHH
Confidence            5   889999999999999998 9999964  45677777776653222   2236889999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q psy1840         182 FVHHKLKEMNAGL  194 (423)
Q Consensus       182 ~I~~~L~~i~~~~  194 (423)
                      +|++.|+.+....
T Consensus       303 eil~~L~~l~~~~  315 (325)
T 3kul_A          303 QIVSVLDALIRSP  315 (325)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCc
Confidence            9999999887643

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.95  E-value=7.9e-28  Score=229.18  Aligned_cols=159  Identities=22%  Similarity=0.444  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......+++.|+|||.+.+..+ 
T Consensus       118 ~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~-  194 (281)
T 1mp8_A          118 LILYAYQLSTALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY-YKASKGKLPIKWMAPESINFRRF-  194 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEEEETTEEEECC--------------------CCGGGCCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cccccHHHEEECCCCCEEECccccccccCcccc-cccccCCCcccccChhhcccCCC-
Confidence            678999999999999999998 999999999999999999999999876543221 11223456678999999976654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||...  ...++...+..+....   ....+++.+.+++.+||+.||++|||+.++
T Consensus       195 --~~~~Di~slG~~l~ell~~g~~pf~~~--~~~~~~~~i~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~~l  267 (281)
T 1mp8_A          195 --TSASDVWMFGVCMWEILMHGVKPFQGV--KNNDVIGRIENGERLP---MPPNCPPTLYSLMTKCWAYDPSRRPRFTEL  267 (281)
T ss_dssp             --SHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CCccCchHHHHHHHHHHhcCCCCCCcC--CHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              889999999999999996 89999743  3455666666543221   223688999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ++.|+.+...
T Consensus       268 ~~~l~~~~~~  277 (281)
T 1mp8_A          268 KAQLSTILEE  277 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=235.38  Aligned_cols=167  Identities=15%  Similarity=0.232  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc--cEEEeccCCcccccCCCcc-----cccccccCCccccCCc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW--VLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAPE   96 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~--~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE   96 (423)
                      ..+.++.||+.||.|||++|++ ||||||+||+++.++  .+||+|||+++........     .......|++.|+|||
T Consensus       160 ~~~~i~~qi~~~L~~LH~~~iv-H~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  238 (352)
T 2jii_A          160 SVLQVACRLLDALEFLHENEYV-HGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMD  238 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCB-CSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-CCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHH
Confidence            3689999999999999999998 999999999999998  9999999998765432211     1123447899999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh---cCCCCCC--CCCCCCchHHHHHHHHHhhh
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT---QGSGLRP--DTSSLDCAPSIIACMRTCWE  171 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~---~~~~~~p--~~~~~~~~~~l~~Li~~C~~  171 (423)
                      .+.+..+   +.++|||||||++|||++|+.||.........+.....   ......+  ......+++++.+++.+||+
T Consensus       239 ~~~~~~~---~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  315 (352)
T 2jii_A          239 LHKGCGP---SRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMA  315 (352)
T ss_dssp             HHTTCCC---CHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHT
T ss_pred             HHccCCC---CchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHh
Confidence            9987654   89999999999999999999999765434444443332   1111111  11112468999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy1840         172 EDPELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       172 ~dP~~RPt~~~I~~~L~~i~~~~  194 (423)
                      .||++||++.+|++.|+.+....
T Consensus       316 ~dp~~Rps~~~l~~~L~~~~~~~  338 (352)
T 2jii_A          316 LTYEEKPPYAMLRNNLEALLQDL  338 (352)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             CChhhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999998887654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.95  E-value=2.1e-27  Score=232.28  Aligned_cols=151  Identities=21%  Similarity=0.280  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......||+.|+|||++.+..+
T Consensus       115 ~~~~~~~qi~~al~~lH~~~iv-HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~  190 (328)
T 3fe3_A          115 EARSKFRQIVSAVQYCHQKRIV-HRDLKAENLLLDADMNIKIADFGFSNEFTVGG---KLDAFCGAPPYAAPELFQGKKY  190 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTSCEEECSTTCCGGGSSSC---GGGTTSSSGGGCCHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCEe-ccCCCHHHEEEcCCCCEEEeeccCceecCCCC---ccccccCCcceeCcccccCCCc
Confidence            3678999999999999999998 99999999999999999999999987654322   2345679999999999987653


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        .+.++|||||||++|||++|+.||.+  .+..++...+..+....|.    .+++++.+++.+||+.||.+|||+.++
T Consensus       191 --~~~~~DiwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~p~----~~s~~~~~li~~~L~~dP~~R~t~~ei  262 (328)
T 3fe3_A          191 --DGPEVDVWSLGVILYTLVSGSLPFDG--QNLKELRERVLRGKYRIPF----YMSTDCENLLKRFLVLNPIKRGTLEQI  262 (328)
T ss_dssp             --CSHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCT----TSCHHHHHHHHHHCCSSTTTSCCHHHH
T ss_pred             --CCchhhhhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCCC----CCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence              25799999999999999999999974  4567777777776544332    468999999999999999999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       263 l~h  265 (328)
T 3fe3_A          263 MKD  265 (328)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            763

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.95  E-value=1e-27  Score=234.04  Aligned_cols=166  Identities=14%  Similarity=0.215  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc-----EEEeccCCcccccCCCcc-----cccccccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV-----LQIADFGLHAFKAGQDET-----GQERKLRRRKLYK   93 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~-----vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~   93 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.     +||+|||+++........     .......||+.|+
T Consensus       106 ~~~~i~~qi~~~l~~LH~~~ii-HrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  184 (330)
T 2izr_A          106 TVLMIAIQLISRMEYVHSKNLI-YRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYM  184 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-ccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCcccc
Confidence            3689999999999999999988 9999999999998887     999999998865432211     1124567899999


Q ss_pred             CCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcCCCCCC-CCCCCCchHHHHHHHHHhhh
Q psy1840          94 APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQGSGLRP-DTSSLDCAPSIIACMRTCWE  171 (423)
Q Consensus        94 APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~~~~~p-~~~~~~~~~~l~~Li~~C~~  171 (423)
                      |||.+.+..+   +.++|||||||++|||++|..||.+... ...+....+.......+ ......++ ++.+++.+||+
T Consensus       185 aPE~~~~~~~---~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~l~  260 (330)
T 2izr_A          185 SINTHLGKEQ---SRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRR  260 (330)
T ss_dssp             CHHHHTTCCC---CHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHHHH
T ss_pred             ChHHHcCCCC---CchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh-HHHHHHHHHHh
Confidence            9999988655   8999999999999999999999976432 33344444433211111 11112355 99999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHhhhc
Q psy1840         172 EDPELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       172 ~dP~~RPt~~~I~~~L~~i~~~~  194 (423)
                      .||.+||++.+|.+.|+.+....
T Consensus       261 ~~p~~RP~~~~l~~~l~~~~~~~  283 (330)
T 2izr_A          261 LDFFEKPDYDYLRKLFTDLFDRK  283 (330)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHc
Confidence            99999999999999998776543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.95  E-value=2.8e-27  Score=227.29  Aligned_cols=155  Identities=22%  Similarity=0.238  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......||+.|+|||.+.+...
T Consensus       138 ~~~~~~~qi~~~l~~lH~~~iv-H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~  214 (298)
T 2zv2_A          138 QARFYFQDLIKGIEYLHYQKII-HRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRK  214 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-ccCCCHHHEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCC
Confidence            3678999999999999999988 999999999999999999999999876543321  1234578999999999976542


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      ...+.++|||||||++|||++|+.||..  .....+...+.......|.  ...+++.+.+++.+||+.||++||++.++
T Consensus       215 ~~~~~~~Di~slG~~l~~l~~g~~pf~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~R~s~~e~  290 (298)
T 2zv2_A          215 IFSGKALDVWAMGVTLYCFVFGQCPFMD--ERIMCLHSKIKSQALEFPD--QPDIAEDLKDLITRMLDKNPESRIVVPEI  290 (298)
T ss_dssp             CEESHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCS--SSCCCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred             CCCCchhhhHhHHHHHHHHHHCCCCCCC--ccHHHHHHHHhcccCCCCC--ccccCHHHHHHHHHHhhcChhhCCCHHHH
Confidence            1236789999999999999999999974  3345555555554333332  23578999999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       291 l~  292 (298)
T 2zv2_A          291 KL  292 (298)
T ss_dssp             TT
T ss_pred             hc
Confidence            65

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.95  E-value=1.3e-27  Score=225.70  Aligned_cols=160  Identities=24%  Similarity=0.483  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......+++.|+|||.+.+..+
T Consensus       105 ~~~~i~~qi~~~l~~lH~~~i~-H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~  182 (268)
T 3sxs_A          105 QLLEMCYDVCEGMAFLESHQFI-HRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY-VSSVGTKFPVKWSAPEVFHYFKY  182 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-ESSCSGGGEEECTTCCEEECCTTCEEECCTTCE-EECCSCCCCGGGCCHHHHHHSEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCcCcceEEECCCCCEEEccCccceecchhhh-hcccCCCcCcccCCHHHHhccCC
Confidence            3689999999999999999988 999999999999999999999999876543322 12233456677999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|+|++ |..||..  ....+....+..+.....   +..+++.+.+++.+||+.||++|||+.+
T Consensus       183 ---~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~~  254 (268)
T 3sxs_A          183 ---SSKSDVWAFGILMWEVFSLGKMPYDL--YTNSEVVLKVSQGHRLYR---PHLASDTIYQIMYSCWHELPEKRPTFQQ  254 (268)
T ss_dssp             ---ETTHHHHHHHHHHHHHHTTTCCTTTT--SCHHHHHHHHHTTCCCCC---CTTSCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             ---chhhhhHHHHHHHHHHHcCCCCCccc--cChHHHHHHHHcCCCCCC---CCcChHHHHHHHHHHcCCChhhCcCHHH
Confidence               889999999999999998 9999974  445666666665543222   2356889999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      +++.|+.+...
T Consensus       255 ll~~L~~l~~~  265 (268)
T 3sxs_A          255 LLSSIEPLREK  265 (268)
T ss_dssp             HHHHHGGGCC-
T ss_pred             HHHHHHHhhhc
Confidence            99999887654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.95  E-value=5.7e-27  Score=238.53  Aligned_cols=155  Identities=18%  Similarity=0.265  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc---CCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLID---SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld---~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||+.|++ ||||||+|||++   .++.+||+|||++........  ......||+.|+|||++.+
T Consensus       111 ~~~~i~~qil~aL~~lH~~giv-HrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~--~~~~~~gt~~Y~APE~l~~  187 (444)
T 3soa_A          111 DASHCIQQILEAVLHCHQMGVV-HRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ--AWFGFAGTPGYLSPEVLRK  187 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCB-CCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCC--BCCCSCSCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-ccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCc--eeecccCCcccCCHHHhcC
Confidence            3678999999999999999998 999999999998   467899999999876543322  2234678999999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+   +.++||||+||++|+|++|..||..  .+..++...+..+....+......+++++.+++.+||+.||.+|||+
T Consensus       188 ~~~---~~~~DIwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta  262 (444)
T 3soa_A          188 DPY---GKPVDLWACGVILYILLVGYPPFWD--EDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITA  262 (444)
T ss_dssp             CCB---CTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             CCC---CCccccHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCH
Confidence            655   8999999999999999999999974  45677888888776555554455789999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       263 ~e~L~h  268 (444)
T 3soa_A          263 AEALKH  268 (444)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999874

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.94  E-value=4.3e-27  Score=224.44  Aligned_cols=156  Identities=27%  Similarity=0.537  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEcCCcc-----EEEeccCCcccccCCCcccccccccCCccccCCcc
Q psy1840          25 SISVNTTASVGMIHLHDSE--IISHGNLRSSNCLIDSRWV-----LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL   97 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld~~~~-----vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~   97 (423)
                      .+.++.|++.||.|||+.|  ++ ||||||+||+++.++.     +||+|||+++....     ......+++.|+|||.
T Consensus       124 ~~~~~~~l~~~l~~lH~~~~~iv-H~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~-----~~~~~~g~~~y~aPE~  197 (287)
T 4f0f_A          124 KLRLMLDIALGIEYMQNQNPPIV-HRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVH-----SVSGLLGNFQWMAPET  197 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCB-CSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSS-----CEECCCCCCTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHhCCCCee-cCCCCcceEEEeccCCCCceeEEeCCCCccccccc-----cccccCCCccccCchh
Confidence            6899999999999999999  88 9999999999987776     99999999874332     1234578899999999


Q ss_pred             ccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840          98 LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus        98 l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                      +.+... .++.++|||||||++|||++|+.||.............+.... ..+.. ...+++.+.+++.+||+.||.+|
T Consensus       198 ~~~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~li~~~l~~dp~~R  274 (287)
T 4f0f_A          198 IGAEEE-SYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEG-LRPTI-PEDCPPRLRNVIELCWSGDPKKR  274 (287)
T ss_dssp             SSCSSC-EECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSC-CCCCC-CTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             hccCCC-CcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccC-CCCCC-CcccCHHHHHHHHHHhcCChhhC
Confidence            854321 2378999999999999999999999876555555455544432 22222 34688999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q psy1840         178 PDLRFVHHKLKE  189 (423)
Q Consensus       178 Pt~~~I~~~L~~  189 (423)
                      ||+.++++.|++
T Consensus       275 ps~~~ll~~L~~  286 (287)
T 4f0f_A          275 PHFSYIVKELSE  286 (287)
T ss_dssp             CCHHHHHHHHHT
T ss_pred             cCHHHHHHHHHh
Confidence            999999998875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.94  E-value=1.9e-27  Score=232.45  Aligned_cols=160  Identities=26%  Similarity=0.446  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+ 
T Consensus       159 ~~~i~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  236 (334)
T 2pvf_A          159 LVSCTYQLARGMEYLASQKCI-HRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVY-  236 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEE-
T ss_pred             HHHHHHHHHHHHHHHHhCCee-CCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCc-
Confidence            689999999999999999988 999999999999999999999999876544332222334456778999999977655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||..  ....++...+..+....   ....++..+.+++.+||+.||.+||++.++
T Consensus       237 --~~~~Di~slG~il~ellt~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~el  309 (334)
T 2pvf_A          237 --THQSDVWSFGVLMWEIFTLGGSPYPG--IPVEELFKLLKEGHRMD---KPANCTNELYMMMRDCWHAVPSQRPTFKQL  309 (334)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHHTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --ChHHHHHHHHHHHHHHHhCCCCCcCc--CCHHHHHHHHhcCCCCC---CCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              899999999999999999 9999974  45566776666653221   223678999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ++.|+.+...
T Consensus       310 l~~L~~l~~~  319 (334)
T 2pvf_A          310 VEDLDRILTL  319 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999888654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.94  E-value=2e-27  Score=224.79  Aligned_cols=160  Identities=24%  Similarity=0.495  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++....... ........+++.|+|||.+.+..+
T Consensus       107 ~~~~i~~~i~~~l~~lH~~~i~-H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~  184 (269)
T 4hcu_A          107 TLLGMCLDVCEGMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSSTGTKFPVKWASPEVFSFSRY  184 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHSTTSTTCCGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-cCCcchheEEEcCCCCEEeccccccccccccc-cccccCcccccccCCHHHhcCCCC
Confidence            3678999999999999999998 99999999999999999999999987653221 112233456778999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|+|++ |..||..  ....++...+..+....   .+..+++.+.+++.+||+.||++||++.+
T Consensus       185 ---~~~~Di~slG~~l~~ll~~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~~  256 (269)
T 4hcu_A          185 ---SSKSDVWSFGVLMWEVFSEGKIPYEN--RSNSEVVEDISTGFRLY---KPRLASTHVYQIMNHCWRERPEDRPAFSR  256 (269)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTTCCCC---CCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhhhHHHHHHHHHHhcCCCCCCCC--CCHHHHHHHHhcCccCC---CCCcCCHHHHHHHHHHccCCcccCcCHHH
Confidence               899999999999999999 8999974  45566777776653222   22356899999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      +++.|+++...
T Consensus       257 ll~~l~~l~~~  267 (269)
T 4hcu_A          257 LLRQLAEIAES  267 (269)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHc
Confidence            99999988653

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.94  E-value=3.4e-27  Score=227.79  Aligned_cols=165  Identities=23%  Similarity=0.388  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+.+..+
T Consensus       137 ~~~~i~~qi~~~l~~LH~~~i~-H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  213 (310)
T 2wqm_A          137 TVWKYFVQLCSALEHMHSRRVM-HRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERIHENGY  213 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTSCEEECCC--------------------CCSSCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHhhCCee-CCCCcHHHEEEcCCCCEEEEeccceeeecCCCc--cccccCCCeeEeChHHhCCCCC
Confidence            3679999999999999999998 999999999999999999999999876533221  1234568889999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|+|++|..||.........+...+.....  +......+++++.+++.+||+.||++|||+.+|
T Consensus       214 ---~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~i  288 (310)
T 2wqm_A          214 ---NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDY--PPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV  288 (310)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCS--CCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccC--CCCcccccCHHHHHHHHHHcCCChhhCCCHHHH
Confidence               899999999999999999999997665666666666665432  222334688999999999999999999999999


Q ss_pred             HHHHHHHhhhcCC
Q psy1840         184 HHKLKEMNAGLKA  196 (423)
Q Consensus       184 ~~~L~~i~~~~~~  196 (423)
                      ++.|+++....+.
T Consensus       289 l~~l~~l~~~~~~  301 (310)
T 2wqm_A          289 YDVAKRMHACTAS  301 (310)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhhh
Confidence            9999998875543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.94  E-value=1.9e-27  Score=242.55  Aligned_cols=155  Identities=24%  Similarity=0.497  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+++++ ||||||+|||++.++.+||+|||+++......     ....++..|+|||.+.+..+
T Consensus       290 ~~~~~~~qi~~~l~~LH~~~iv-HrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-----~~~~~~~~y~aPE~~~~~~~  363 (450)
T 1k9a_A          290 CLLKFSLDVCEAMEYLEGNNFV-HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKF  363 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECTTSCEEECCCTTCEECC-----------CCCTTTSCHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-CCCCCHhhEEECCCCCEEEeeCCCcccccccc-----cCCCCCcceeCHHHhcCCCC
Confidence            3689999999999999999988 99999999999999999999999987532211     22356778999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||...  +..++...+..+..  +.. +..+++.+.++|.+||+.||++|||+.+
T Consensus       364 ---~~~sDvwslG~~l~el~t~g~~P~~~~--~~~~~~~~i~~~~~--~~~-p~~~~~~l~~li~~cl~~dp~~Rpt~~~  435 (450)
T 1k9a_A          364 ---STKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEKGYK--MDA-PDGCPPAVYDVMKNCWHLDAATRPTFLQ  435 (450)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCSSTTS--CTTTHHHHHHTTCC--CCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CcHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCC--CCC-CCcCCHHHHHHHHHHcCCChhHCcCHHH
Confidence               899999999999999998 99999753  34556666666532  222 2468999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      |++.|+.+..
T Consensus       436 l~~~L~~i~~  445 (450)
T 1k9a_A          436 LREQLEHIRT  445 (450)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.94  E-value=2.4e-27  Score=228.96  Aligned_cols=162  Identities=25%  Similarity=0.443  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       149 ~~~~~~~qi~~al~~lH~~~i~-H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  227 (316)
T 2xir_A          149 HLICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY  227 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-cccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccc
Confidence            3679999999999999999998 999999999999999999999999876543333223334567788999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||..... ...+...+..+....   ....+++.+.+++.+||+.||.+|||+.+
T Consensus       228 ---~~~~Di~slG~il~~l~t~g~~p~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~e  300 (316)
T 2xir_A          228 ---TIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEGTRMR---APDYTTPEMYQTMLDCWHGEPSQRPTFSE  300 (316)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCSSTTCCC-SHHHHHHHHHTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---cchhHHHHHHHHHHHHHhCCCCCCcccch-hHHHHHHhccCccCC---CCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence               899999999999999998 9999975443 344555555543221   12357899999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      |++.|+.+...
T Consensus       301 ll~~L~~~~~~  311 (316)
T 2xir_A          301 LVEHLGNLLQA  311 (316)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999887654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.94  E-value=2.2e-27  Score=227.57  Aligned_cols=163  Identities=22%  Similarity=0.357  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       115 ~~~~~~~qi~~~l~~lH~~~iv-H~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  193 (295)
T 3ugc_A          115 KLLQYTSQICKGMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESK  193 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCcc-cCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCC
Confidence            3678999999999999999998 9999999999999999999999998765433221 1123345667799999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCC----------C----hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM----------T----DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRT  168 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~----------~----~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~  168 (423)
                      +   +.++||||||+++|||++|..||.....          .    ...+...+..+..  +. .+..+++++.+++.+
T Consensus       194 ~---~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~li~~  267 (295)
T 3ugc_A          194 F---SVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGR--LP-RPDGCPDEIYMIMTE  267 (295)
T ss_dssp             C---CHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCC--CC-CCTTCCHHHHHHHHH
T ss_pred             C---ChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCc--CC-CCcCcCHHHHHHHHH
Confidence            5   8999999999999999999998853110          0    0122233333221  11 234689999999999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHhhh
Q psy1840         169 CWEEDPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       169 C~~~dP~~RPt~~~I~~~L~~i~~~  193 (423)
                      ||+.||++|||+.++++.|+.+...
T Consensus       268 ~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          268 CWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             HSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HcCCChhhCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999988754

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=5.6e-27  Score=224.48  Aligned_cols=164  Identities=29%  Similarity=0.521  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc--ccccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE--TGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ........++..|+|||.+.+.
T Consensus       125 ~~~~i~~qi~~~l~~LH~~~i~-H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  203 (298)
T 3pls_A          125 DLISFGLQVARGMEYLAEQKFV-HRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTY  203 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-cCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccC
Confidence            3679999999999999999998 999999999999999999999999875533221  1122344677889999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .+   +.++||||||+++|+|++|..|+.. .....++...+..+....   ....+++.+.+++.+||+.||.+|||+.
T Consensus       204 ~~---~~~~Di~slG~il~~l~~g~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~  276 (298)
T 3pls_A          204 RF---TTKSDVWSFGVLLWELLTRGAPPYR-HIDPFDLTHFLAQGRRLP---QPEYCPDSLYQVMQQCWEADPAVRPTFR  276 (298)
T ss_dssp             CC---CHHHHHHHHHHHHHHHHHTSCCTTT-TSCGGGHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC---ChhhchhhHHHHHHHHhhCCCCCCc-cCCHHHHHHHhhcCCCCC---CCccchHHHHHHHHHHccCChhhCcCHH
Confidence            55   8999999999999999996655432 234455556665543222   2235789999999999999999999999


Q ss_pred             HHHHHHHHHhhhcC
Q psy1840         182 FVHHKLKEMNAGLK  195 (423)
Q Consensus       182 ~I~~~L~~i~~~~~  195 (423)
                      ++++.|+++.....
T Consensus       277 ~ll~~l~~~~~~l~  290 (298)
T 3pls_A          277 VLVGEVEQIVSALL  290 (298)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998876553

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.94  E-value=5.7e-27  Score=225.51  Aligned_cols=180  Identities=16%  Similarity=0.334  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+.+..+
T Consensus       120 ~~~~~~~qi~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  196 (303)
T 3a7i_A          120 QIATILREILKGLDYLHSEKKI-HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIKQSAY  196 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECBTTBC--CBCCCCSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHHCCCc-cCCCChheEEECCCCCEEEeecccceecCcccc--ccCccCCCcCccCHHHHhcCCC
Confidence            3689999999999999999988 999999999999999999999999876543221  2234568899999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|+|++|..||..  ....+....+..+..  + .....++..+.+++.+||+.||++|||+.++
T Consensus       197 ---~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  268 (303)
T 3a7i_A          197 ---DSKADIWSLGITAIELARGEPPHSE--LHPMKVLFLIPKNNP--P-TLEGNYSKPLKEFVEACLNKEPSFRPTAKEL  268 (303)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCC--C-CCCSSCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred             ---CchhhhHHHHHHHHHHccCCCCCCC--cCHHHHHHHhhcCCC--C-CCccccCHHHHHHHHHHcCCChhhCcCHHHH
Confidence               8899999999999999999999974  344555555554322  1 2234678999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCChHHHHHHHHHHhhhccc
Q psy1840         184 HHKLKEMNAGLKANIFDNMLAIMEKYAFNLE  214 (423)
Q Consensus       184 ~~~L~~i~~~~~~~~~d~~~~~~e~~~~~lE  214 (423)
                      ++.........+.+..+.+...+.++....+
T Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (303)
T 3a7i_A          269 LKHKFILRNAKKTSYLTELIDRYKRWKAEQS  299 (303)
T ss_dssp             TTCHHHHHHCCCGGGGHHHHHHHHHHHHHCC
T ss_pred             hhChhhhcCCCccHHHHHHHHHHHHhhhhcc
Confidence            9877666666677788888888888765544

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.94  E-value=7.3e-27  Score=229.41  Aligned_cols=150  Identities=19%  Similarity=0.292  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+..+ 
T Consensus       107 ~~~~~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  182 (337)
T 1o6l_A          107 ARFYGAEIVSALEYLHSRDVV-YRDIKLENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPEVLEDNDY-  182 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTSCEEECCCTTCBCSCCTT--CCBCCCEECGGGCCGGGGSSSCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCcCCHHHEEECCCCCEEEeeccchhhcccCC--CcccccccChhhCChhhhcCCCC-
Confidence            568899999999999999998 99999999999999999999999987532221  12245678999999999987665 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++|||||||++|||++|..||..  .+..++...+.......|    ..+++++.+++.+||+.||.+||     +
T Consensus       183 --~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~lL~~dP~~R~g~~~~~  254 (337)
T 1o6l_A          183 --GRAVDWWGLGVVMYEMMCGRLPFYN--QDHERLFELILMEEIRFP----RTLSPEAKSLLAGLLKKDPKQRLGGGPSD  254 (337)
T ss_dssp             --CTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSSTTTSTTCSTTT
T ss_pred             --CchhhcccchhHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhhcCHHHhcCCCCCC
Confidence              8999999999999999999999974  345666777666543333    35789999999999999999999     8


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.+|++.
T Consensus       255 ~~ei~~h  261 (337)
T 1o6l_A          255 AKEVMEH  261 (337)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHcC
Confidence            8887653

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.94  E-value=3.5e-27  Score=227.71  Aligned_cols=153  Identities=21%  Similarity=0.249  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......+|+.|+|||++.+..+ 
T Consensus       122 ~~~i~~qi~~al~~lH~~~iv-H~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~-  196 (308)
T 3g33_A          122 IKDLMRQFLRGLDFLHANCIV-HRDLKPENILVTSGGTVKLADFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQSTY-  196 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCTTTEEECTTSCEEECSCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSCC-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEEcCCCCEEEeeCccccccCCCc---ccCCccccccccCchHHcCCCC-
Confidence            679999999999999999988 99999999999999999999999987653222   2244578999999999987665 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC-----------------------CCCCchHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT-----------------------SSLDCAPS  161 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~-----------------------~~~~~~~~  161 (423)
                        +.++|||||||++|||++|..||..  .+..+....+.......+..                       ....+++.
T Consensus       197 --~~~~DiwslG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (308)
T 3g33_A          197 --ATPVDMWSVGCIFAEMFRRKPLFCG--NSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEES  272 (308)
T ss_dssp             --CSTHHHHHHHHHHHHTTTSSCSCCC--SSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHH
T ss_pred             --CchHHHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHH
Confidence              8999999999999999999999974  33444444443211000000                       01256789


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         162 IIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       162 l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +.+++.+||+.||++|||+.++++.
T Consensus       273 ~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          273 GAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHhcCCCccCCCHHHHhcC
Confidence            9999999999999999999998763

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.94  E-value=3.6e-28  Score=243.64  Aligned_cols=153  Identities=19%  Similarity=0.203  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++ .++.+||+|||+++.......   .....+|+.|+|||++.+.. 
T Consensus       143 ~~~~~~qi~~aL~~LH~~~iv-HrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~-  217 (394)
T 4e7w_A          143 IKLYMYQLLRSLAYIHSIGIC-HRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEP---NVSYICSRYYRAPELIFGAT-  217 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCSSCSCGGGCCHHHHTTCS-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-CCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCC---CcccccCcCccCHHHHcCCC-
Confidence            568999999999999999988 999999999999 799999999999876533322   23456789999999987643 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------CCCCCCC--------CCCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------SGLRPDT--------SSLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------~~~~p~~--------~~~~~  158 (423)
                       .++.++|||||||++|||++|+.||.+.  +..+.+..+...                 ....|..        ....+
T Consensus       218 -~~~~~~DiwSlG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (394)
T 4e7w_A          218 -NYTTNIDIWSTGCVMAELMQGQPLFPGE--SGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRT  294 (394)
T ss_dssp             -SCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTC
T ss_pred             -CCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccC
Confidence             2489999999999999999999999753  222222222110                 0001111        11247


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++++.+|+.+||+.||.+|||+.++++
T Consensus       295 ~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          295 PPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence            789999999999999999999998875

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.94  E-value=7.1e-27  Score=230.40  Aligned_cols=175  Identities=18%  Similarity=0.283  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......      ....||+.|+|||++.+...
T Consensus       155 ~~~~i~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~------~~~~gt~~y~aPE~~~~~~~  227 (348)
T 1u5q_A          155 EIAAVTHGALQGLAYLHSHNMI-HRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVILAMDE  227 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCB-CCCCSGGGEEEETTTEEEECCCTTCBSSSSB------CCCCSCGGGCCHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-eCCCCHHHEEECCCCCEEEeeccCceecCCC------CcccCCcceeCHhhhccccC
Confidence            3679999999999999999998 9999999999999999999999998754321      34578999999999854221


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                      ..++.++|||||||++|||++|..||..  ....+.+..+..+.  .+......+++.+.+++.+||+.||++|||+.++
T Consensus       228 ~~~~~~~DiwslG~il~ell~g~~p~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l  303 (348)
T 1u5q_A          228 GQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNE--SPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVL  303 (348)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSC--CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHhcC--CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHH
Confidence            2348899999999999999999999964  33444444554433  2223334678999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCChHHHHHHHHHHhh
Q psy1840         184 HHKLKEMNAGLKANIFDNMLAIMEKYA  210 (423)
Q Consensus       184 ~~~L~~i~~~~~~~~~d~~~~~~e~~~  210 (423)
                      ++........ ......+.........
T Consensus       304 l~h~~~~~~~-~~~~~~~~~~~~~~~~  329 (348)
T 1u5q_A          304 LKHRFVLRER-PPTVIMDLIQRTKDAV  329 (348)
T ss_dssp             TTCHHHHSCC-CTTHHHHHHHHHHHHH
T ss_pred             hhChhhhccC-CcchhhHHHHHHHHHH
Confidence            8875544433 3334444444443333

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.94  E-value=4.9e-28  Score=237.93  Aligned_cols=164  Identities=14%  Similarity=0.201  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc--cEEEeccCCcccccCCCc-----ccccccccCCccccCCc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW--VLQIADFGLHAFKAGQDE-----TGQERKLRRRKLYKAPE   96 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~--~vKL~DFGla~~~~~~~~-----~~~~~~~~gt~~y~APE   96 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++  .+||+|||+++.......     ........|++.|+|||
T Consensus       152 ~~~~i~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  230 (345)
T 2v62_A          152 TVLQLGIRMLDVLEYIHENEYV-HGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLD  230 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-CCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHH
Confidence            3689999999999999999988 999999999999877  999999999876532211     11123457899999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCC-----CCCCCchHHHHHHHHHhhh
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD-----TSSLDCAPSIIACMRTCWE  171 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~-----~~~~~~~~~l~~Li~~C~~  171 (423)
                      .+.+..+   +.++|||||||++|||++|+.||.........+...........|.     .....+++++.+++.+||+
T Consensus       231 ~~~~~~~---~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  307 (345)
T 2v62_A          231 AHKGVAL---SRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHS  307 (345)
T ss_dssp             HHHTCCC---CHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHT
T ss_pred             HhcCCCC---CchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhh
Confidence            9987654   8999999999999999999999964333333222221111001110     1112578899999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHh
Q psy1840         172 EDPELRPDLRFVHHKLKEMN  191 (423)
Q Consensus       172 ~dP~~RPt~~~I~~~L~~i~  191 (423)
                      .||++||++.+|++.|+.+.
T Consensus       308 ~dp~~Rps~~~l~~~L~~~~  327 (345)
T 2v62_A          308 LAYDEKPNYQALKKILNPHG  327 (345)
T ss_dssp             CCTTCCCCHHHHHHHHCTTC
T ss_pred             cCcccCCCHHHHHHHHhccC
Confidence            99999999999999987654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.94  E-value=5e-27  Score=232.73  Aligned_cols=155  Identities=17%  Similarity=0.264  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC---ccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~---~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      .....++.||+.||.|||+.|++ ||||||+||+++.+   +.+||+|||++.......   ......||+.|+|||++.
T Consensus       128 ~~~~~~~~qi~~al~~lH~~~iv-H~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~~~  203 (362)
T 2bdw_A          128 ADASHCIQQILESIAYCHSNGIV-HRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE---AWHGFAGTPGYLSPEVLK  203 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCB-CCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCC---SCCCSCSCTTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeE-eccCchHHEEEecCCCCCCEEEeecCcceEecCCc---ccccCCCCccccCHHHHc
Confidence            34679999999999999999998 99999999999865   459999999987654322   123467899999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +..+   +.++|||||||++|+|++|..||..  .+..++...+..+....|......+++++.+++.+||+.||++||+
T Consensus       204 ~~~~---~~~~DiwslG~il~~ll~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  278 (362)
T 2bdw_A          204 KDPY---SKPVDIWACGVILYILLVGYPPFWD--EDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRIT  278 (362)
T ss_dssp             TCCC---CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             cCCC---CchhhHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcC
Confidence            7655   8999999999999999999999974  4556777777776555444434467899999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       279 ~~e~l~h  285 (362)
T 2bdw_A          279 ADQALKV  285 (362)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhcC
Confidence            9999765

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.94  E-value=2.7e-27  Score=229.60  Aligned_cols=159  Identities=26%  Similarity=0.492  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       139 ~~~~i~~qi~~~l~~lH~~~i~-H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  217 (322)
T 1p4o_A          139 KMIQMAGEIADGMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVF  217 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCB-CSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCc-cCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCC
Confidence            3678999999999999999998 999999999999999999999999876543322222234456788999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|+|++ |..||..  ....++...+..+....   ....++..+.+++.+||+.||++|||+.+
T Consensus       218 ---~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~e  289 (322)
T 1p4o_A          218 ---TTYSDVWSFGVVLWEIATLAEQPYQG--LSNEQVLRFVMEGGLLD---KPDNCPDMLFELMRMCWQYNPKMRPSFLE  289 (322)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTSCCTTTT--SCHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhcCCCcccc--CCHHHHHHHHHcCCcCC---CCCCCCHHHHHHHHHHcCCCcccCcCHHH
Confidence               899999999999999999 8889974  45566666666543221   12367899999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy1840         183 VHHKLKEMN  191 (423)
Q Consensus       183 I~~~L~~i~  191 (423)
                      +++.|+...
T Consensus       290 ~l~~L~~~~  298 (322)
T 1p4o_A          290 IISSIKEEM  298 (322)
T ss_dssp             HHHHHGGGS
T ss_pred             HHHHHHHhh
Confidence            999887654

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.94  E-value=5.3e-28  Score=233.64  Aligned_cols=159  Identities=28%  Similarity=0.455  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc------------ccccccCCcc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG------------QERKLRRRKL   91 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~------------~~~~~~gt~~   91 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++..........            ......||+.
T Consensus       109 ~~~~i~~qi~~al~~lH~~~iv-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  187 (310)
T 3s95_A          109 QRVSFAKDIASGMAYLHSMNII-HRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPY  187 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGG
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-CCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcc
Confidence            3689999999999999999988 99999999999999999999999987653322111            1124578999


Q ss_pred             ccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChH----HHHHHHhcCCCCCCCCCCCCchHHHHHHHH
Q psy1840          92 YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDE----EIITSVTQGSGLRPDTSSLDCAPSIIACMR  167 (423)
Q Consensus        92 y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~----~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~  167 (423)
                      |+|||.+.+..+   +.++||||||+++|||++|..||........    .........       .+..+++.+.+++.
T Consensus       188 y~aPE~~~~~~~---~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~  257 (310)
T 3s95_A          188 WMAPEMINGRSY---DEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRY-------CPPNCPPSFFPITV  257 (310)
T ss_dssp             GCCHHHHTTCCC---CTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHT-------CCTTCCTTHHHHHH
T ss_pred             eeCHHHhcCCCC---CcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcccccc-------CCCCCCHHHHHHHH
Confidence            999999987655   8999999999999999999999864321110    011111110       12356788999999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHhhh
Q psy1840         168 TCWEEDPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       168 ~C~~~dP~~RPt~~~I~~~L~~i~~~  193 (423)
                      +||+.||++|||+.++++.|+.+...
T Consensus       258 ~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          258 RCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999888754

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.94  E-value=1.8e-27  Score=228.66  Aligned_cols=163  Identities=25%  Similarity=0.312  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......||+.|+|||.+.+..+
T Consensus       112 ~~~~~~~qi~~~l~~lH~~~i~-H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~  189 (294)
T 4eqm_A          112 TAINFTNQILDGIKHAHDMRIV-HRDIKPQNILIDSNKTLKIFDFGIAKALSETSL-TQTNHVLGTVQYFSPEQAKGEAT  189 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTSCEEECCCSSSTTC--------------CCSSCCHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCCEEEEeCCCccccccccc-cccCccccCccccCHhHhcCCCC
Confidence            3689999999999999999998 999999999999999999999999876533221 22234568999999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC-CCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-CHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS-GLRPDTSSLDCAPSIIACMRTCWEEDPELRP-DLR  181 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~-~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-t~~  181 (423)
                         +.++||||||+++|||++|+.||...  +..+......... +..+......+++.+.+++.+||+.||.+|| ++.
T Consensus       190 ---~~~~Di~slG~~l~~ll~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~  264 (294)
T 4eqm_A          190 ---DECTDIYSIGIVLYEMLVGEPPFNGE--TAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQ  264 (294)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHSSCSSCSS--CHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHH
T ss_pred             ---CchHhHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHH
Confidence               88999999999999999999999743  3333333333222 1111122346789999999999999999998 899


Q ss_pred             HHHHHHHHHhhh
Q psy1840         182 FVHHKLKEMNAG  193 (423)
Q Consensus       182 ~I~~~L~~i~~~  193 (423)
                      ++.+.|..+...
T Consensus       265 ~l~~~l~~~~~~  276 (294)
T 4eqm_A          265 EMKDDLSSVLHE  276 (294)
T ss_dssp             HHHHHHHTSSSS
T ss_pred             HHHHHHHHHHhh
Confidence            999888876554

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=2.3e-27  Score=236.18  Aligned_cols=163  Identities=23%  Similarity=0.456  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++........  .......+++.|+|||.+.+.
T Consensus       193 ~~~~i~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  271 (373)
T 3c1x_A          193 DLIGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ  271 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHCCEe-cCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCC
Confidence            3678999999999999999998 9999999999999999999999998765332211  112334567789999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .+   +.++|||||||++|||++ |..||....  ..++...+..+....   .+..++..+.+++.+||+.||++||++
T Consensus       272 ~~---~~~~DvwSlG~il~ellt~~~~p~~~~~--~~~~~~~~~~~~~~~---~p~~~~~~l~~li~~cl~~dp~~RPs~  343 (373)
T 3c1x_A          272 KF---TTKSDVWSFGVLLWELMTRGAPPYPDVN--TFDITVYLLQGRRLL---QPEYCPDPLYEVMLKCWHPKAEMRPSF  343 (373)
T ss_dssp             CC---CHHHHHHHHHHHHHHHHTTSCCSCTTSC--SSCHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CC---CcHHHHHHHHHHHHHHHhCcCCCCCCCC--HHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            55   899999999999999999 677776432  233444555543221   223678999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcC
Q psy1840         181 RFVHHKLKEMNAGLK  195 (423)
Q Consensus       181 ~~I~~~L~~i~~~~~  195 (423)
                      .++++.|+.+.....
T Consensus       344 ~ell~~L~~i~~~~~  358 (373)
T 3c1x_A          344 SELVSRISAIFSTFI  358 (373)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999998876543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.94  E-value=2.5e-27  Score=241.76  Aligned_cols=161  Identities=25%  Similarity=0.474  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||+|||+++++ ||||||+|||++.++.+||+|||+++....... .......++..|+|||.+.+..+
T Consensus       281 ~~~~i~~qi~~~l~~LH~~~iv-HrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~  358 (452)
T 1fmk_A          281 QLVDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAPEAALYGRF  358 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-CCCCChhhEEECCCCCEEECCCccceecCCCce-ecccCCcccccccCHhHHhcCCC
Confidence            3689999999999999999998 999999999999999999999999876543221 11223446678999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||.+  ....++...+..+...  .. +..+++.+.++|.+||+.||++|||+.+
T Consensus       359 ---~~~sDvwslG~~l~el~t~g~~P~~~--~~~~~~~~~i~~~~~~--~~-~~~~~~~l~~li~~cl~~dP~~Rpt~~~  430 (452)
T 1fmk_A          359 ---TIKSDVWSFGILLTELTTKGRVPYPG--MVNREVLDQVERGYRM--PC-PPECPESLHDLMCQCWRKEPEERPTFEY  430 (452)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTCCC--CC-CTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CccccHHhHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCC--CC-CCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence               899999999999999999 8999974  4567777777765322  22 2368999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q psy1840         183 VHHKLKEMNAGL  194 (423)
Q Consensus       183 I~~~L~~i~~~~  194 (423)
                      |++.|+.+....
T Consensus       431 l~~~L~~~~~~~  442 (452)
T 1fmk_A          431 LQAFLEDYFTST  442 (452)
T ss_dssp             HHHHHHTTTSCS
T ss_pred             HHHHHHHHhccC
Confidence            999998876543

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.94  E-value=3.7e-27  Score=229.59  Aligned_cols=155  Identities=16%  Similarity=0.288  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......||+.|+|||.+.+..+
T Consensus       142 ~~~~i~~qi~~~L~~LH~~~iv-H~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~  218 (321)
T 2c30_A          142 QIATVCEAVLQALAYLHAQGVI-HRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLY  218 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEECCCCcEEEeeeeeeeecccCcc--ccccccCCccccCHhhhcCCCC
Confidence            3689999999999999999988 999999999999999999999999876543221  2245578999999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|||++|+.||..  ....+....+......... ....+++.+.+++.+||+.||++|||+.++
T Consensus       219 ---~~~~Dv~slG~il~el~~g~~pf~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~el  292 (321)
T 2c30_A          219 ---ATEVDIWSLGIMVIEMVDGEPPYFS--DSPVQAMKRLRDSPPPKLK-NSHKVSPVLRDFLERMLVRDPQERATAQEL  292 (321)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSSCCCCT-TGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHhcCCCCCcC-ccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence               8899999999999999999999974  3455566666554322211 123578899999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++..
T Consensus       293 l~hp  296 (321)
T 2c30_A          293 LDHP  296 (321)
T ss_dssp             HTSG
T ss_pred             hcCh
Confidence            8754

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.94  E-value=8.9e-27  Score=225.25  Aligned_cols=159  Identities=26%  Similarity=0.457  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHHh---CCCeeecCCCCCCEEEcCCcc-EEEeccCCcccccCCCcccccccccCCccccCCccc
Q psy1840          23 IGSISVNTTASVGMIHLHD---SEIISHGNLRSSNCLIDSRWV-LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~---~~ii~HrDLkp~NILld~~~~-vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l   98 (423)
                      ...+.++.|++.||.|||+   +|++ ||||||+||+++.++. +||+|||++......     .....|++.|+|||.+
T Consensus       102 ~~~~~~~~qi~~~l~~LH~~~~~~iv-H~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~  175 (307)
T 2eva_A          102 AHAMSWCLQCSQGVAYLHSMQPKALI-HRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-----MTNNKGSAAWMAPEVF  175 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSSCCC-CCCCSGGGEEEETTTTEEEECCCCC-----------------CCTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCee-cCCCChhHEEEeCCCCEEEEcccccccccccc-----cccCCCCCceEChhhh
Confidence            4468999999999999999   7888 9999999999998886 799999998654321     1234588999999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      .+..+   +.++||||||+++|||++|+.||.........+...+..+.  .+.. ...++..+.+++.+||+.||++||
T Consensus       176 ~~~~~---~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~li~~~l~~dp~~Rp  249 (307)
T 2eva_A          176 EGSNY---SEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT--RPPL-IKNLPKPIESLMTRCWSKDPSQRP  249 (307)
T ss_dssp             TCCCC---CTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC--CCCC-BTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             CCCCC---CcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC--CCCc-ccccCHHHHHHHHHHhcCChhhCc
Confidence            87654   89999999999999999999999765555545554544432  2222 236789999999999999999999


Q ss_pred             CHHHHHHHHHHHhhh
Q psy1840         179 DLRFVHHKLKEMNAG  193 (423)
Q Consensus       179 t~~~I~~~L~~i~~~  193 (423)
                      |+.++++.|+.+...
T Consensus       250 s~~ell~~L~~~~~~  264 (307)
T 2eva_A          250 SMEEIVKIMTHLMRY  264 (307)
T ss_dssp             CHHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999887654

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=6e-27  Score=228.22  Aligned_cols=166  Identities=29%  Similarity=0.422  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHhC--------CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc--ccccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDS--------EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG--QERKLRRRKLYKA   94 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~--------~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~--~~~~~~gt~~y~A   94 (423)
                      .+.++.|++.||.|||+.        |++ ||||||+||+++.++.+||+|||++..........  ......||+.|+|
T Consensus       136 ~~~i~~~i~~~l~~lH~~~~~~~~~~~iv-H~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a  214 (337)
T 3mdy_A          136 MLKLAYSSVSGLCHLHTEIFSTQGKPAIA-HRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMP  214 (337)
T ss_dssp             HHHHHHHHHHHHHHHHSCBCSTTCBCCEE-CSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCEE-ecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeC
Confidence            679999999999999998        887 99999999999999999999999987553322211  1234578999999


Q ss_pred             CccccCCCCCCCCC------ccchHHHHHHHHHHHhC----------CCCCCCCC---CChHHHHHHHhcCCCCCCCCC-
Q psy1840          95 PELLRQPHLPRGTQ------KGDVYSFGLVLYEVIGR----------QGPWGHLR---MTDEEIITSVTQGSGLRPDTS-  154 (423)
Q Consensus        95 PE~l~~~~~~~~s~------ksDVyS~Giil~elltg----------~~Pf~~~~---~~~~~i~~~i~~~~~~~p~~~-  154 (423)
                      ||++.+...   +.      ++|||||||++|||++|          +.||....   .........+ .....++..+ 
T Consensus       215 PE~~~~~~~---~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  290 (337)
T 3mdy_A          215 PEVLDESLN---RNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIV-CIKKLRPSFPN  290 (337)
T ss_dssp             HHHHTTCCC---TTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHH-TTSCCCCCCCG
T ss_pred             hhhcccccC---CccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHH-hhhccCccccc
Confidence            999987543   33      49999999999999999          66775431   1222333333 2222333322 


Q ss_pred             ---CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhcC
Q psy1840         155 ---SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLK  195 (423)
Q Consensus       155 ---~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~~~~  195 (423)
                         ...+++++.+++.+||+.||.+|||+.+|++.|+.+.....
T Consensus       291 ~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~  334 (337)
T 3mdy_A          291 RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD  334 (337)
T ss_dssp             GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTT
T ss_pred             cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcc
Confidence               23578889999999999999999999999999999887543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.94  E-value=3.4e-27  Score=224.65  Aligned_cols=159  Identities=21%  Similarity=0.410  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......+++.|+|||.+.+..+
T Consensus       114 ~~~~~~~~i~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~  191 (281)
T 3cc6_A          114 TLVLYSLQICKAMAYLESINCV-HRDIAVRNILVASPECVKLGDFGLSRYIEDEDY-YKASVTRLPIKWMSPESINFRRF  191 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCSGGGEEEEETTEEEECCCCGGGCC----------CCCCCGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCccceEEECCCCcEEeCccCCCcccccccc-cccccCCCCcceeCchhhccCCC
Confidence            3678999999999999999998 999999999999999999999999876543221 11233456778999999976654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||...  ...+....+..+....   ....+++.+.+++.+||+.||++||++.+
T Consensus       192 ---~~~~Di~slG~il~~llt~g~~p~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~e  263 (281)
T 3cc6_A          192 ---TTASDVWMFAVCMWEILSFGKQPFFWL--ENKDVIGVLEKGDRLP---KPDLCPPVLYTLMTRCWDYDPSDRPRFTE  263 (281)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCTTTTS--CGGGHHHHHHHTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhccHHHHHHHHHHHhCCCCCcccC--ChHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHccCCchhCcCHHH
Confidence               899999999999999998 99999643  3344555555443221   12357899999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      +++.|+.+..
T Consensus       264 ll~~L~~~~~  273 (281)
T 3cc6_A          264 LVCSLSDVYQ  273 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.94  E-value=3.3e-27  Score=231.81  Aligned_cols=161  Identities=17%  Similarity=0.220  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .....++.||+.||.|||+.|++ ||||||+|||++ ++.+||+|||+++...............||+.|+|||++.+..
T Consensus       108 ~~~~~i~~qi~~al~~lH~~~ii-HrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  185 (343)
T 3dbq_A          108 WERKSYWKNMLEAVHTIHQHGIV-HSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMS  185 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCee-cCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhcc
Confidence            34689999999999999999998 999999999997 5789999999988654333322334567899999999986411


Q ss_pred             --------CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840         103 --------LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus       103 --------~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                              ...++.++|||||||++|||++|+.||....... .....+.....  ....+...+.++.+++.+||+.||
T Consensus       186 ~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~L~~dp  262 (343)
T 3dbq_A          186 SSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-SKLHAIIDPNH--EIEFPDIPEKDLQDVLKCCLKRDP  262 (343)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-HHHHHHHCTTS--CCCCCCCSCHHHHHHHHHHTCSST
T ss_pred             ccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHH-HHHHHHhcCCc--ccCCcccCCHHHHHHHHHHcCCCh
Confidence                    1134889999999999999999999997533222 22333322111  111223467899999999999999


Q ss_pred             CCCCCHHHHHHHHH
Q psy1840         175 ELRPDLRFVHHKLK  188 (423)
Q Consensus       175 ~~RPt~~~I~~~L~  188 (423)
                      .+|||+.++++...
T Consensus       263 ~~Rpt~~e~l~hp~  276 (343)
T 3dbq_A          263 KQRISIPELLAHPY  276 (343)
T ss_dssp             TTSCCHHHHHTSHH
T ss_pred             hHCCCHHHHHhCcc
Confidence            99999999987543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.94  E-value=4.5e-27  Score=223.86  Aligned_cols=159  Identities=20%  Similarity=0.460  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++....... ........+++.|+|||.+.+..+
T Consensus       121 ~~~~i~~qi~~~l~~lH~~~i~-H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~  198 (283)
T 3gen_A          121 QLLEMCKDVCEAMEYLESKQFL-HRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTSSVGSKFPVRWSPPEVLMYSKF  198 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HHSTTSTTSCGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-CCCCccceEEEcCCCCEEEccccccccccccc-cccccCCccCcccCCHHHhccCCC
Confidence            3689999999999999999998 99999999999999999999999987653221 112233456678999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|+|++ |..||..  ....+....+..+.....   +..+++.+.+++.+||+.||++|||+.+
T Consensus       199 ---~~~~Dv~slG~~l~~l~t~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~~p~~Rps~~~  270 (283)
T 3gen_A          199 ---SSKSDIWAFGVLMWEIYSLGKMPYER--FTNSETAEHIAQGLRLYR---PHLASEKVYTIMYSCWHEKADERPTFKI  270 (283)
T ss_dssp             ---SHHHHHHHHHHHHHHHHTTTCCTTTT--SCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCccc--cChhHHHHHHhcccCCCC---CCcCCHHHHHHHHHHccCChhHCcCHHH
Confidence               899999999999999998 9999974  455666666666532222   2356889999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      +++.|+.+..
T Consensus       271 ll~~L~~~~~  280 (283)
T 3gen_A          271 LLSNILDVMD  280 (283)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988764

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.94  E-value=3.9e-27  Score=228.82  Aligned_cols=166  Identities=27%  Similarity=0.344  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.|++.||.|||++|++ ||||||+||+++.++.+||+|||++................|++.|+|||.+.+..+
T Consensus       140 ~~~~i~~~i~~~l~~lH~~~iv-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  218 (321)
T 2qkw_B          140 QRLEICIGAARGLHYLHTRAII-HRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRL  218 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBC
T ss_pred             HHHHHHHHHHHHHHHhcCCCee-cCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCC
Confidence            3689999999999999999988 999999999999999999999999876443332222334567889999999977655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCC----ChHHHH-HHHhcCCC---CCCC---CCCCCchHHHHHHHHHhhhc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM----TDEEII-TSVTQGSG---LRPD---TSSLDCAPSIIACMRTCWEE  172 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~----~~~~i~-~~i~~~~~---~~p~---~~~~~~~~~l~~Li~~C~~~  172 (423)
                         +.++||||||+++|||++|+.||.....    ...+.. .....+..   ..+.   .....++..+.+++.+||+.
T Consensus       219 ---~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  295 (321)
T 2qkw_B          219 ---TEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLAL  295 (321)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCS
T ss_pred             ---CcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCC
Confidence               8999999999999999999999964321    111111 11111110   1111   11234577899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy1840         173 DPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       173 dP~~RPt~~~I~~~L~~i~~~  193 (423)
                      ||++|||+.++++.|+.+...
T Consensus       296 dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          296 SSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHS
T ss_pred             CcccCcCHHHHHHHHHHHhhc
Confidence            999999999999999887653

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.94  E-value=5.5e-27  Score=231.15  Aligned_cols=180  Identities=18%  Similarity=0.177  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC---CccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS---RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~---~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      .....++.||+.||.|||+.|++ ||||||+||+++.   ++.+||+|||+++......   ......||+.|+|||++.
T Consensus       148 ~~~~~i~~qi~~~L~~LH~~~iv-H~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~  223 (349)
T 2w4o_A          148 RDAADAVKQILEAVAYLHENGIV-HRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV---LMKTVCGTPGYCAPEILR  223 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEESSSSTTCCEEECCCC-------------------CGGGSCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeE-ecCCCcccEEEecCCCCCCEEEccCccccccCccc---ccccccCCCCccCHHHhc
Confidence            34689999999999999999998 9999999999975   8999999999987653221   123456899999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +..+   +.++|||||||++|||++|..||.... ....+...+.......+......++.++.+++.+||+.||++|||
T Consensus       224 ~~~~---~~~~DiwslG~il~ell~g~~pf~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt  299 (349)
T 2w4o_A          224 GCAY---GPEVDMWSVGIITYILLCGFEPFYDER-GDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLT  299 (349)
T ss_dssp             TCCC---CTHHHHHHHHHHHHHHHHSSCTTCCTT-CHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCC
T ss_pred             CCCC---CcccchHHHHHHHHHHHhCCCCCCCCc-ccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcC
Confidence            7655   899999999999999999999997532 334455666655443333333568899999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCChHHHHHHHHHHhh
Q psy1840         180 LRFVHHKLKEMNAGLKANIFDNMLAIMEKYA  210 (423)
Q Consensus       180 ~~~I~~~L~~i~~~~~~~~~d~~~~~~e~~~  210 (423)
                      +.++++.-.-..........+.....++++.
T Consensus       300 ~~e~l~hp~~~~~~~~~~~~~~~~~~~~~~~  330 (349)
T 2w4o_A          300 TFQALQHPWVTGKAANFVHMDTAQKKLQEFN  330 (349)
T ss_dssp             HHHHHHSTTTTSTTCCCSCCHHHHHHHHHHH
T ss_pred             HHHHhcCcccCCCccchhhhcchHHHHHHHH
Confidence            9999875322222222334455556666654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.94  E-value=7.3e-27  Score=230.38  Aligned_cols=153  Identities=16%  Similarity=0.197  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc---EEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV---LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~---vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.   +||+|||++........  ......||+.|+|||++.+.
T Consensus       132 ~~~i~~qi~~al~~lH~~~iv-HrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~  208 (351)
T 3c0i_A          132 ASHYMRQILEALRYCHDNNII-HRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGL--VAGGRVGTPHFMAPEVVKRE  208 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSC--BCCCCCSCGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCce-eccCChHHeEEecCCCCCcEEEecCcceeEecCCCe--eecCCcCCcCccCHHHHcCC
Confidence            578999999999999999988 9999999999986554   99999999876543221  12345789999999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .+   +.++|||||||++|+|++|..||..   ...++...+..+....+......+++++.+++.+||+.||++|||+.
T Consensus       209 ~~---~~~~DiwslG~il~~ll~g~~pf~~---~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  282 (351)
T 3c0i_A          209 PY---GKPVDVWGCGVILFILLSGCLPFYG---TKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVY  282 (351)
T ss_dssp             CB---CTHHHHHHHHHHHHHHHHSSCSSCS---SHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CC---CchHhhHHHHHHHHHHHHCCCCCCC---cHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHH
Confidence            55   8999999999999999999999974   34566666665543332222235789999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       283 e~l~h  287 (351)
T 3c0i_A          283 EALNH  287 (351)
T ss_dssp             HHHTS
T ss_pred             HHhcC
Confidence            99864

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.94  E-value=2.8e-27  Score=230.69  Aligned_cols=161  Identities=22%  Similarity=0.391  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       165 ~~~~~~~qi~~~l~~lH~~~iv-H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  243 (333)
T 2i1m_A          165 DLLHFSSQVAQGMAFLASKNCI-HRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVY  243 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCcc-cCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCC
Confidence            3689999999999999999988 999999999999999999999999876543332222234456778999999887654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||...... ..+...+..+...  . .+..+++.+.+++.+||+.||.+|||+.+
T Consensus       244 ---~~~~Di~slG~il~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~l~~li~~~l~~~p~~Rps~~~  316 (333)
T 2i1m_A          244 ---TVQSDVWSYGILLWEIFSLGLNPYPGILVN-SKFYKLVKDGYQM--A-QPAFAPKNIYSIMQACWALEPTHRPTFQQ  316 (333)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTTSCCSSTTCCSS-HHHHHHHHHTCCC--C-CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---ChHHHHHHHHHHHHHHHcCCCCCCcccchh-HHHHHHHhcCCCC--C-CCCCCCHHHHHHHHHHhccChhhCcCHHH
Confidence               899999999999999998 88999754332 3333333333211  1 12356899999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      |++.|+.+..
T Consensus       317 l~~~L~~~~~  326 (333)
T 2i1m_A          317 ICSFLQEQAQ  326 (333)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.94  E-value=3.8e-27  Score=234.53  Aligned_cols=160  Identities=28%  Similarity=0.527  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-ccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++......... ......++..|+|||.+.+..
T Consensus       148 ~~~~i~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  226 (373)
T 2qol_A          148 QLVGMLRGIASGMKYLSDMGYV-HRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK  226 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-CCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCC
Confidence            3689999999999999999998 99999999999999999999999987654332111 112223466799999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++|||||||++||+++ |..||..  ....++...+..+....+   ...++..+.+++.+||+.||.+||++.
T Consensus       227 ~---~~~~Dv~SlG~il~ellt~g~~P~~~--~~~~~~~~~i~~~~~~~~---~~~~~~~l~~li~~cl~~dp~~RPs~~  298 (373)
T 2qol_A          227 F---TSASDVWSYGIVLWEVMSYGERPYWE--MSNQDVIKAVDEGYRLPP---PMDCPAALYQLMLDCWQKDRNNRPKFE  298 (373)
T ss_dssp             C---CHHHHHHHHHHHHHHHHTTC-CTTTT--CCHHHHHHHHHTTEECCC---CTTCBHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             c---CchhcHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCCCC---CccccHHHHHHHHHHhCcChhhCcCHH
Confidence            5   899999999999999998 9999974  456677777765432221   236889999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy1840         182 FVHHKLKEMNA  192 (423)
Q Consensus       182 ~I~~~L~~i~~  192 (423)
                      +|++.|+.+..
T Consensus       299 ~i~~~L~~~~~  309 (373)
T 2qol_A          299 QIVSILDKLIR  309 (373)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=4.5e-27  Score=224.65  Aligned_cols=162  Identities=25%  Similarity=0.470  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......+++.|+|||.+.+..
T Consensus       111 ~~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  189 (287)
T 1u59_A          111 NVAELLHQVSMGMKYLEEKNFV-HRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK  189 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHHCCEe-eCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCC
Confidence            3689999999999999999988 9999999999999999999999998765433221 1123345678899999997655


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++||||||+++|||++ |..||..  ....++...+..+..  +.. +..+++.+.+++.+||+.||++||++.
T Consensus       190 ~---~~~~Di~slG~il~ellt~g~~p~~~--~~~~~~~~~i~~~~~--~~~-~~~~~~~l~~li~~~l~~~p~~Rps~~  261 (287)
T 1u59_A          190 F---SSRSDVWSYGVTMWEALSYGQKPYKK--MKGPEVMAFIEQGKR--MEC-PPECPPELYALMSDCWIYKWEDRPDFL  261 (287)
T ss_dssp             E---CHHHHHHHHHHHHHHHHTTSCCTTTT--CCTHHHHHHHHTTCC--CCC-CTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             C---CchhhHHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHhcCCc--CCC-CCCcCHHHHHHHHHHcCCChhhCcCHH
Confidence            4   889999999999999998 9999974  344666666666532  222 236889999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q psy1840         182 FVHHKLKEMNAGL  194 (423)
Q Consensus       182 ~I~~~L~~i~~~~  194 (423)
                      ++++.|+.+..+.
T Consensus       262 ~l~~~l~~~~~~~  274 (287)
T 1u59_A          262 TVEQRMRACYYSL  274 (287)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998886543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.94  E-value=7.1e-27  Score=222.00  Aligned_cols=161  Identities=27%  Similarity=0.511  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......++..|+|||.+.+..+
T Consensus       110 ~~~~i~~qi~~~l~~lH~~~i~-H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~  187 (279)
T 1qpc_A          110 KLLDMAAQIAEGMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTF  187 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-ECCTTCCCCTTTSCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-ccCCCHhhEEEcCCCCEEECCCcccccccCccc-ccccCCCCccCccChhhhccCCC
Confidence            3689999999999999999988 999999999999999999999999876543321 11233456778999999976654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||..  ....++...+..+....   ....+++.+.+++.+||+.||++|||+.+
T Consensus       188 ---~~~~Di~slG~il~el~~~g~~p~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~~  259 (279)
T 1qpc_A          188 ---TIKSDVWSFGILLTEIVTHGRIPYPG--MTNPEVIQNLERGYRMV---RPDNCPEELYQLMRLCWKERPEDRPTFDY  259 (279)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhhhHHHHHHHHHHHhCCCCCCcc--cCHHHHHHHHhcccCCC---CcccccHHHHHHHHHHhccChhhCCCHHH
Confidence               889999999999999999 8999974  45566777776543221   22467899999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q psy1840         183 VHHKLKEMNAGL  194 (423)
Q Consensus       183 I~~~L~~i~~~~  194 (423)
                      +++.|+.+....
T Consensus       260 l~~~l~~~~~~~  271 (279)
T 1qpc_A          260 LRSVLEDFFTAT  271 (279)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999998887644

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=1.6e-27  Score=232.33  Aligned_cols=155  Identities=17%  Similarity=0.217  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC--CccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS--RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~--~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.  ++.+||+|||++.......   ......+++.|+|||++.+.
T Consensus       103 ~~~~i~~qi~~al~~lH~~giv-H~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~  178 (321)
T 1tki_A          103 EIVSYVHQVCEALQFLHSHNIG-HFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD---NFRLLFTAPEYYAPEVHQHD  178 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC---EEEEEESCGGGSCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCC-cCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC---ccccccCChhhcCcHHhcCC
Confidence            3689999999999999999998 9999999999987  7899999999987654322   12345688999999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .+   +.++|||||||++|+|++|..||..  .+..++...+..+....+......++.++.+++.+||..||.+|||+.
T Consensus       179 ~~---~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~  253 (321)
T 1tki_A          179 VV---STATDMWSLGTLVYVLLSGINPFLA--ETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTAS  253 (321)
T ss_dssp             EE---CHHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CC---CchhhHHHHHHHHHHHHhCCCCCcC--CCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            54   8999999999999999999999974  456677777776654433322346789999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         182 FVHHKL  187 (423)
Q Consensus       182 ~I~~~L  187 (423)
                      ++++.-
T Consensus       254 e~l~hp  259 (321)
T 1tki_A          254 EALQHP  259 (321)
T ss_dssp             HHHHSH
T ss_pred             HHhcCh
Confidence            998754

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.94  E-value=4.5e-27  Score=233.08  Aligned_cols=154  Identities=18%  Similarity=0.209  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc----cEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW----VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~----~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++    .+||+|||++.......   ......||+.|+|||++.
T Consensus       116 ~~~~i~~qi~~aL~~LH~~giv-HrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~  191 (361)
T 2yab_A          116 EATSFIKQILDGVNYLHTKKIA-HFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGV---EFKNIFGTPEFVAPEIVN  191 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTC---CCCCCCSCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCC---ccccCCCCccEECchHHc
Confidence            3679999999999999999988 999999999998777    79999999987654322   123457899999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +..+   +.++|||||||++|+|++|..||.+  .+..++...+..+....+......+++.+.+++.+||..||.+|||
T Consensus       192 ~~~~---~~~~DiwslGvil~~ll~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t  266 (361)
T 2yab_A          192 YEPL---GLEADMWSIGVITYILLSGASPFLG--DTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLT  266 (361)
T ss_dssp             TCCC---CTHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             CCCC---CccccHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcC
Confidence            7655   8999999999999999999999974  4567777777766544332223467889999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       267 ~~e~l~h  273 (361)
T 2yab_A          267 IQEALRH  273 (361)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhcC
Confidence            9998763

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.94  E-value=6.1e-27  Score=224.18  Aligned_cols=161  Identities=25%  Similarity=0.447  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       118 ~~~~i~~qi~~~l~~LH~~~i~-H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  196 (291)
T 1xbb_A          118 NIIELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK  196 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHhCCeE-cCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCC
Confidence            3689999999999999999988 9999999999999999999999998765433221 1112334567899999997765


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++||||||+++|+|++ |..||..  ....++...+..+..  +.. ...+++.+.+++.+||+.||.+||++.
T Consensus       197 ~---~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~  268 (291)
T 1xbb_A          197 F---SSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKGER--MGC-PAGCPREMYDLMNLCWTYDVENRPGFA  268 (291)
T ss_dssp             E---EHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTCC--CCC-CTTCCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             C---ChhhhHHHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCC--CCC-CCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            4   889999999999999999 9999974  455666666666532  222 236889999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy1840         182 FVHHKLKEMNAG  193 (423)
Q Consensus       182 ~I~~~L~~i~~~  193 (423)
                      ++++.|+.+...
T Consensus       269 ~l~~~L~~~~~~  280 (291)
T 1xbb_A          269 AVELRLRNYYYD  280 (291)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887653

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.94  E-value=3.2e-27  Score=230.47  Aligned_cols=169  Identities=23%  Similarity=0.318  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHhC---------CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc------ccccccccC
Q psy1840          24 GSISVNTTASVGMIHLHDS---------EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE------TGQERKLRR   88 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~---------~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~------~~~~~~~~g   88 (423)
                      ....++.||+.||.|||+.         |++ ||||||+|||++.++.+||+|||++........      ........|
T Consensus       112 ~~~~i~~qi~~~L~~LH~~~~~~~~~~~~iv-H~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~g  190 (336)
T 3g2f_A          112 SSCRLAHSVTRGLAYLHTELPRGDHYKPAIS-HRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVG  190 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHCCBCCGGGCBCCEE-CSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTS
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccccee-ecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCC
Confidence            3678999999999999999         988 999999999999999999999999876543221      112234568


Q ss_pred             CccccCCccccCCCC----CCCCCccchHHHHHHHHHHHhCCCCCCCCCC----------------ChHHHHHHHhcCCC
Q psy1840          89 RKLYKAPELLRQPHL----PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM----------------TDEEIITSVTQGSG  148 (423)
Q Consensus        89 t~~y~APE~l~~~~~----~~~s~ksDVyS~Giil~elltg~~Pf~~~~~----------------~~~~i~~~i~~~~~  148 (423)
                      |+.|+|||++.+...    ...+.++|||||||++|||++|..||.....                ....+...+. ...
T Consensus       191 t~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  269 (336)
T 3g2f_A          191 TIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVS-REK  269 (336)
T ss_dssp             CGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHT-TSC
T ss_pred             ccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhc-ccc
Confidence            999999999976311    1126789999999999999999776532111                1112222222 222


Q ss_pred             CCCCCC-----CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhc
Q psy1840         149 LRPDTS-----SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       149 ~~p~~~-----~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~~~  194 (423)
                      .++..+     ...+++.+.+++.+||+.||++|||+.++++.|+.+....
T Consensus       270 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~  320 (336)
T 3g2f_A          270 QRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIW  320 (336)
T ss_dssp             CCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCC
T ss_pred             cCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHH
Confidence            222222     1235678999999999999999999999999999887644

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.94  E-value=6.2e-27  Score=234.34  Aligned_cols=159  Identities=17%  Similarity=0.244  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-  102 (423)
                      .+..++.||+.||.|||+.|++ ||||||+|||++ ++.+||+|||+++...............||+.|+|||++.+.. 
T Consensus       156 ~~~~i~~qi~~aL~~lH~~~iv-HrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  233 (390)
T 2zmd_A          156 ERKSYWKNMLEAVHTIHQHGIV-HSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSS  233 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCC-CCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-ecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccc
Confidence            4689999999999999999998 999999999995 5899999999998654333222234567999999999987521 


Q ss_pred             -------CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCC
Q psy1840         103 -------LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus       103 -------~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                             ...++.++|||||||++|||++|..||.... .....+..+...... .. .+...+.++.+++.+||+.||.
T Consensus       234 ~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~li~~~L~~dP~  310 (390)
T 2zmd_A          234 SRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-NQISKLHAIIDPNHE-IE-FPDIPEKDLQDVLKCCLKRDPK  310 (390)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC-CHHHHHHHHHCTTSC-CC-CCCCSCHHHHHHHHHHTCSSTT
T ss_pred             cccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh-HHHHHHHHHhCcccc-CC-CCccchHHHHHHHHHHcccChh
Confidence                   1134889999999999999999999997532 223334444432211 11 1224578999999999999999


Q ss_pred             CCCCHHHHHHHH
Q psy1840         176 LRPDLRFVHHKL  187 (423)
Q Consensus       176 ~RPt~~~I~~~L  187 (423)
                      +||++.++++..
T Consensus       311 ~Rps~~ell~hp  322 (390)
T 2zmd_A          311 QRISIPELLAHP  322 (390)
T ss_dssp             TSCCHHHHHTSH
T ss_pred             hCCCHHHHhhCc
Confidence            999999998754

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.94  E-value=5.6e-27  Score=220.99  Aligned_cols=157  Identities=24%  Similarity=0.391  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSE--IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ..+.++.||+.||.|||+.+  ++ ||||||+||+++.++.++|+|||++.....       ....+|+.|+|||.+.+.
T Consensus       112 ~~~~i~~qi~~~l~~lH~~~~~i~-H~dikp~Nil~~~~~~~~l~~~~~~~~~~~-------~~~~~t~~y~aPE~~~~~  183 (271)
T 3kmu_A          112 QAVKFALDMARGMAFLHTLEPLIP-RHALNSRSVMIDEDMTARISMADVKFSFQS-------PGRMYAPAWVAPEALQKK  183 (271)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSCCT-TCCCSGGGEEECTTSCEEEEGGGSCCTTSC-------TTCBSCGGGSCHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcee-cCCCccceEEEcCCcceeEEeccceeeecc-------cCccCCccccChhhhccC
Confidence            36899999999999999998  87 999999999999999999999988654211       234678899999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .....+.++||||||+++|||++|+.||..  ....+....+.... ..+.. +..+++.+.+++.+||+.||++|||+.
T Consensus       184 ~~~~~~~~~Di~slG~il~el~~g~~p~~~--~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~li~~~l~~~p~~Rps~~  259 (271)
T 3kmu_A          184 PEDTNRRSADMWSFAVLLWELVTREVPFAD--LSNMEIGMKVALEG-LRPTI-PPGISPHVSKLMKICMNEDPAKRPKFD  259 (271)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHCSCTTTT--SCHHHHHHHHHHSC-CCCCC-CTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCccc--cChHHHHHHHHhcC-CCCCC-CCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence            543334589999999999999999999974  34455544444332 22222 236889999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy1840         182 FVHHKLKEMNA  192 (423)
Q Consensus       182 ~I~~~L~~i~~  192 (423)
                      ++++.|+.+..
T Consensus       260 ~il~~L~~l~~  270 (271)
T 3kmu_A          260 MIVPILEKMQD  270 (271)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhhc
Confidence            99999988753

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.94  E-value=6e-27  Score=220.70  Aligned_cols=159  Identities=24%  Similarity=0.497  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++....... ........++..|+|||.+.+..+
T Consensus       105 ~~~~~~~~i~~~l~~lH~~~i~-H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~  182 (267)
T 3t9t_A          105 TLLGMCLDVCEGMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSSTGTKFPVKWASPEVFSFSRY  182 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHSTTSTTCCGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-cCCCchheEEECCCCCEEEccccccccccccc-ccccccccccccccChhhhcCCCc
Confidence            3679999999999999999998 99999999999999999999999987653221 111233456778999999986654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|+|++ |..||..  ....++...+..+....   .+..++..+.+++.+||+.||++||++.+
T Consensus       183 ---~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~i~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~~  254 (267)
T 3t9t_A          183 ---SSKSDVWSFGVLMWEVFSEGKIPYEN--RSNSEVVEDISTGFRLY---KPRLASTHVYQIMNHCWRERPEDRPAFSR  254 (267)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTTCCCC---CCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---cchhchhhhHHHHHHHhccCCCCCCC--CCHHHHHHHHhcCCcCC---CCccCcHHHHHHHHHHccCChhhCcCHHH
Confidence               899999999999999999 8999974  44566777776653221   12357899999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      +++.|+.+..
T Consensus       255 ll~~L~~l~~  264 (267)
T 3t9t_A          255 LLRQLAEIAE  264 (267)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=1.3e-26  Score=226.70  Aligned_cols=161  Identities=25%  Similarity=0.481  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       148 ~~~~i~~qi~~aL~~LH~~~iv-H~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  226 (333)
T 1mqb_A          148 QLVGMLRGIAAGMKYLANMNYV-HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK  226 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-CCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCC
Confidence            3689999999999999999998 9999999999999999999999998765432211 1112334567899999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++||||||+++|||++ |..||..  ....++...+..+...  .. ...++..+.+++.+||+.||++||++.
T Consensus       227 ~---~~~~Di~slG~il~ellt~g~~pf~~--~~~~~~~~~~~~~~~~--~~-~~~~~~~l~~li~~~l~~~p~~Rps~~  298 (333)
T 1mqb_A          227 F---TSASDVWSFGIVMWEVMTYGERPYWE--LSNHEVMKAINDGFRL--PT-PMDCPSAIYQLMMQCWQQERARRPKFA  298 (333)
T ss_dssp             C---CHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTTCCC--CC-CTTCBHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             C---CchhhhHHHHHHHHHHHcCCCCCccc--CCHHHHHHHHHCCCcC--CC-cccCCHHHHHHHHHHcCCChhhCcCHH
Confidence            5   889999999999999998 9999964  4556777777665322  11 236889999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy1840         182 FVHHKLKEMNAG  193 (423)
Q Consensus       182 ~I~~~L~~i~~~  193 (423)
                      ++++.|+.+...
T Consensus       299 ~l~~~L~~~~~~  310 (333)
T 1mqb_A          299 DIVSILDKLIRA  310 (333)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc
Confidence            999999887653

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.94  E-value=5.2e-27  Score=229.01  Aligned_cols=154  Identities=20%  Similarity=0.248  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc----cEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW----VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~----~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++    .+||+|||++........   .....||+.|+|||++.
T Consensus       115 ~~~~i~~qi~~al~~lH~~~iv-H~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~  190 (326)
T 2y0a_A          115 EATEFLKQILNGVYYLHSLQIA-HFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIVN  190 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSC---CCCCCSCTTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCeE-cCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCc---cccccCCcCcCCceeec
Confidence            3689999999999999999988 999999999999887    899999999876543221   23457899999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +..+   +.++|||||||++|+|++|..||..  ....+....+.......+......++..+.+++.+||+.||++|||
T Consensus       191 ~~~~---~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt  265 (326)
T 2y0a_A          191 YEPL---GLEADMWSIGVITYILLSGASPFLG--DTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMT  265 (326)
T ss_dssp             TCCC---CTHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             CCCC---CcHHHHHHHHHHHHHHHHCcCCCCC--CCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCC
Confidence            7655   8999999999999999999999964  3456666666654433332222457889999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       266 ~~e~l~h  272 (326)
T 2y0a_A          266 IQDSLQH  272 (326)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9999874

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.94  E-value=8.8e-28  Score=238.48  Aligned_cols=153  Identities=14%  Similarity=0.050  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      +.++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++.....     .....+++.|+|||++.+... .
T Consensus       197 ~~i~~qi~~aL~~LH~~~iv-HrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~-~  269 (371)
T 3q60_A          197 HILTAQLIRLAANLQSKGLV-HGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTA-T  269 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTTEE-ETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEE-E
T ss_pred             HHHHHHHHHHHHHHHHCCCc-cCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCC-C
Confidence            67889999999999999988 9999999999999999999999998754321     113456688999999976221 2


Q ss_pred             CCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHH---HhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITS---VTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~---i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ++.++|||||||++|||++|+.||.............   ...............+++.+.+++.+||+.||++|||+.+
T Consensus       270 ~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e  349 (371)
T 3q60_A          270 FTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLE  349 (371)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHH
T ss_pred             cCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            3899999999999999999999997542211100000   0000000011112367899999999999999999999999


Q ss_pred             HHH
Q psy1840         183 VHH  185 (423)
Q Consensus       183 I~~  185 (423)
                      +++
T Consensus       350 ~l~  352 (371)
T 3q60_A          350 AME  352 (371)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            865

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.94  E-value=4.8e-27  Score=242.41  Aligned_cols=158  Identities=25%  Similarity=0.487  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+++++ ||||||+|||++.++.+||+|||+++....... .......++..|+|||.+.+..+ 
T Consensus       320 ~~~i~~qi~~~L~~LH~~~iv-HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~-  396 (495)
T 1opk_A          320 LLYMATQISSAMEYLEKKNFI-HRNLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKF-  396 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECGGGCEEECCTTCEECCTTCCE-ECCTTCCCCGGGCCHHHHHHCEE-
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCCChhhEEECCCCcEEEeecccceeccCCce-eecCCCcCCcceeCHhHHhcCCC-
Confidence            678999999999999999988 999999999999999999999999886543321 11223445678999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||...  ...++...+..+...  . .+..+++.+.++|.+||+.||++|||+.+|
T Consensus       397 --~~~sDvwSlG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~~~~--~-~~~~~~~~l~~li~~cl~~dP~~RPs~~el  469 (495)
T 1opk_A          397 --SIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEKDYRM--E-RPEGCPEKVYELMRACWQWNPSDRPSFAEI  469 (495)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCCC--C-CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CcHHhHHhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcCCCC--C-CCCCCCHHHHHHHHHHcCcChhHCcCHHHH
Confidence              899999999999999999 89999753  345566666554322  1 224688999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       470 ~~~L~~~~~  478 (495)
T 1opk_A          470 HQAFETMFQ  478 (495)
T ss_dssp             HHHHHTSCS
T ss_pred             HHHHHHHHh
Confidence            999987754

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.94  E-value=7.6e-27  Score=220.68  Aligned_cols=154  Identities=27%  Similarity=0.459  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCC---CeeecCCCCCCEEEcC--------CccEEEeccCCcccccCCCcccccccccCCccc
Q psy1840          24 GSISVNTTASVGMIHLHDSE---IISHGNLRSSNCLIDS--------RWVLQIADFGLHAFKAGQDETGQERKLRRRKLY   92 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~---ii~HrDLkp~NILld~--------~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y   92 (423)
                      ....++.|++.||.|||++|   ++ ||||||+||+++.        ++.+||+|||++.......    .....+++.|
T Consensus       106 ~~~~i~~~l~~~l~~lH~~~~~~i~-H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~y  180 (271)
T 3dtc_A          106 ILVNWAVQIARGMNYLHDEAIVPII-HRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTT----KMSAAGAYAW  180 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSSCCC-CSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-----------------CCGGG
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcee-ecCCchHHEEEecccccccccCcceEEccCCccccccccc----ccCCCCccce
Confidence            36899999999999999998   66 9999999999985        7889999999987543222    1244688899


Q ss_pred             cCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhc
Q psy1840          93 KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEE  172 (423)
Q Consensus        93 ~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~  172 (423)
                      +|||.+.+..+   +.++||||||+++|+|++|+.||..  .........+.......+  ....+++.+.+++.+||+.
T Consensus       181 ~aPE~~~~~~~---~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~  253 (271)
T 3dtc_A          181 MAPEVIRASMF---SKGSDVWSYGVLLWELLTGEVPFRG--IDGLAVAYGVAMNKLALP--IPSTCPEPFAKLMEDCWNP  253 (271)
T ss_dssp             SCHHHHHHCCC---SHHHHHHHHHHHHHHHHHCCCTTTT--SCHHHHHHHHHTSCCCCC--CCTTCCHHHHHHHHHHTCS
T ss_pred             eCHHHhccCCC---CchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHhhhcCCCCCC--CCcccCHHHHHHHHHHhcC
Confidence            99999987654   8999999999999999999999974  344555555544332222  2346789999999999999


Q ss_pred             CCCCCCCHHHHHHHHHH
Q psy1840         173 DPELRPDLRFVHHKLKE  189 (423)
Q Consensus       173 dP~~RPt~~~I~~~L~~  189 (423)
                      ||.+|||+.++++.|+.
T Consensus       254 ~p~~Rps~~e~l~~L~~  270 (271)
T 3dtc_A          254 DPHSRPSFTNILDQLTT  270 (271)
T ss_dssp             SGGGSCCHHHHHHHHHC
T ss_pred             CcccCcCHHHHHHHHhc
Confidence            99999999999998875

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.94  E-value=1.4e-26  Score=220.30  Aligned_cols=154  Identities=18%  Similarity=0.264  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc---EEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV---LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~---vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.   +||+|||++.......   ......+++.|+|||.+.+
T Consensus       106 ~~~~~~~~i~~~l~~lH~~~i~-H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~  181 (284)
T 3kk8_A          106 DASHCIQQILESIAYCHSNGIV-HRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE---AWHGFAGTPGYLSPEVLKK  181 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSC---BCCCSCSCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCcC-cCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCc---cccCCCCCcCCcCchhhcC
Confidence            3678999999999999999988 9999999999986655   9999999987554322   1234578899999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+   +.++||||||+++|+|++|..||..  ....+....+..+....+......+++++.+++.+||+.||++|||+
T Consensus       182 ~~~---~~~~Di~slG~~l~~l~~g~~pf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~  256 (284)
T 3kk8_A          182 DPY---SKPVDIWACGVILYILLVGYPPFWD--EDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITA  256 (284)
T ss_dssp             CCB---CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             CCC---CcccchHHHHHHHHHHHHCCCCCCC--CchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCH
Confidence            655   8999999999999999999999974  45566777777665554544445789999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       257 ~~~l~h  262 (284)
T 3kk8_A          257 DQALKV  262 (284)
T ss_dssp             HHHTTS
T ss_pred             HHHhcC
Confidence            999764

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.94  E-value=8.7e-27  Score=223.51  Aligned_cols=162  Identities=23%  Similarity=0.461  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc--ccccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE--TGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ........+++.|+|||.+.+.
T Consensus       129 ~~~~i~~ql~~~l~~lH~~~i~-H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  207 (298)
T 3f66_A          129 DLIGFGLQVAKGMKYLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQ  207 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-CCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCC
Confidence            3678999999999999999998 999999999999999999999999876543221  1122344567789999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .+   +.++||||||+++|+|++ |..||...  ...++...+..+....   .+..++..+.+++.+||+.||++|||+
T Consensus       208 ~~---~~~~Di~slG~il~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~  279 (298)
T 3f66_A          208 KF---TTKSDVWSFGVLLWELMTRGAPPYPDV--NTFDITVYLLQGRRLL---QPEYCPDPLYEVMLKCWHPKAEMRPSF  279 (298)
T ss_dssp             CC---CHHHHHHHHHHHHHHHHTTSCCSSTTS--CTTTHHHHHHTTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CC---ChHHHHHHHHHHHHHHHhCCCCCCccC--CHHHHHHHHhcCCCCC---CCccCCHHHHHHHHHHcCCChhhCcCH
Confidence            55   899999999999999999 55566543  2333444444443222   223578999999999999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q psy1840         181 RFVHHKLKEMNAGL  194 (423)
Q Consensus       181 ~~I~~~L~~i~~~~  194 (423)
                      .++++.|+.+....
T Consensus       280 ~ell~~L~~~~~~~  293 (298)
T 3f66_A          280 SELVSRISAIFSTF  293 (298)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887654

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.94  E-value=7e-27  Score=222.93  Aligned_cols=155  Identities=19%  Similarity=0.316  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC-C
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP-H  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~-~  102 (423)
                      ...++.|++.||.|||++ |++ ||||||+||+++.++.+||+|||++.......   ......+++.|+|||.+... .
T Consensus       111 ~~~i~~qi~~~l~~lH~~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~  186 (290)
T 3fme_A          111 LGKIAVSIVKALEHLHSKLSVI-HRDVKPSNVLINALGQVKMCDFGISGYLVDDV---AKDIDAGCKPYMAPERINPELN  186 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCC-CCCCSGGGCEECTTCCEEBCCC------------------CCCCCCSCHHHHSCCTT
T ss_pred             HHHHHHHHHHHHHHHhhcCCee-cCCCCHHHEEECCCCCEEEeecCCcccccccc---cccccCCCccccChhhcChhhc
Confidence            678999999999999998 998 99999999999999999999999987653322   12334688999999997421 1


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ...++.++||||||+++|+|++|..||.........+...+....   +......+++++.+++.+||+.||++|||+.+
T Consensus       187 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e  263 (290)
T 3fme_A          187 QKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS---PQLPADKFSAEFVDFTSQCLKKNSKERPTYPE  263 (290)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC---CCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCC---CCcccccCCHHHHHHHHHHhhcChhhCcCHHH
Confidence            113488999999999999999999999754444444444444432   22233467899999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       264 ~l~h  267 (290)
T 3fme_A          264 LMQH  267 (290)
T ss_dssp             HTTS
T ss_pred             HHhC
Confidence            9874

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.94  E-value=9.1e-27  Score=224.33  Aligned_cols=163  Identities=28%  Similarity=0.437  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++................|++.|+|||.+.+. + 
T Consensus       135 ~~~i~~~i~~~l~~lH~~~i~-H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~-  211 (307)
T 2nru_A          135 RCKIAQGAANGINFLHENHHI-HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGE-I-  211 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTE-E-
T ss_pred             HHHHHHHHHHHHHHHhcCCee-cCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCC-C-
Confidence            679999999999999999988 9999999999999999999999998765433332223445789999999998764 2 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCC--hHHHHHHHhcCCC-------CCCCCCCCCchHHHHHHHHHhhhcCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--DEEIITSVTQGSG-------LRPDTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--~~~i~~~i~~~~~-------~~p~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                        +.++||||||+++|+|++|..||......  ...+...+.....       .........++..+.+++.+||+.||.
T Consensus       212 --~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~  289 (307)
T 2nru_A          212 --TPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKN  289 (307)
T ss_dssp             --CTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTT
T ss_pred             --CccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcc
Confidence              88999999999999999999999753221  1223333322111       001111234567899999999999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q psy1840         176 LRPDLRFVHHKLKEMNA  192 (423)
Q Consensus       176 ~RPt~~~I~~~L~~i~~  192 (423)
                      +|||+.+|++.|+++..
T Consensus       290 ~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          290 KRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             TSCCHHHHHHHHHHHC-
T ss_pred             cCcCHHHHHHHHHHHhc
Confidence            99999999999988753

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.94  E-value=4e-27  Score=232.74  Aligned_cols=144  Identities=19%  Similarity=0.316  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++......  ......+||+.|+|||++.+..+ 
T Consensus       126 ~~~~~~qi~~aL~~LH~~giv-HrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  201 (353)
T 3txo_A          126 ARFYAAEIISALMFLHDKGII-YRDLKLDNVLLDHEGHCKLADFGMCKEGICNG--VTTATFCGTPDYIAPEILQEMLY-  201 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTSCEEECCCTTCBCSCC-----------CCGGGCCHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-ccCCCHHHEEECCCCCEEEccccceeecccCC--ccccccCCCcCeEChhhcCCCCc-
Confidence            568999999999999999998 99999999999999999999999987532221  22345679999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|||||||++|||++|..||..  .+..++...+..+....|.    .+++.+.+++++||+.||.+||++
T Consensus       202 --~~~~DiwslG~il~ell~G~~Pf~~--~~~~~~~~~i~~~~~~~p~----~~~~~~~~li~~lL~~dP~~R~~~  269 (353)
T 3txo_A          202 --GPAVDWWAMGVLLYEMLCGHAPFEA--ENEDDLFEAILNDEVVYPT----WLHEDATGILKSFMTKNPTMRLGS  269 (353)
T ss_dssp             --TTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCT----TSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred             --CCccCCCcchHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCCC----CCCHHHHHHHHHHhhhCHHHccCC
Confidence              8999999999999999999999974  4567788888776544442    478899999999999999999998

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.94  E-value=1.5e-26  Score=228.69  Aligned_cols=144  Identities=22%  Similarity=0.368  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+..+ 
T Consensus       123 ~~~~~~qi~~aL~~LH~~giv-HrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  198 (353)
T 2i0e_A          123 AVFYAAEIAIGLFFLQSKGII-YRDLKLDNVMLDSEGHIKIADFGMCKENIWDG--VTTKTFCGTPDYIAPEIIAYQPY-  198 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCSCGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-eccCCHHHEEEcCCCcEEEEeCCcccccccCC--cccccccCCccccChhhhcCCCc-
Confidence            578999999999999999998 99999999999999999999999987532221  12345679999999999987665 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|+|||||++|||++|+.||..  .+..++...+.......|    ..+++++.+++.+||+.||.+||+.
T Consensus       199 --~~~~DiwslG~il~ell~G~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          199 --GKSVDWWAFGVLLYEMLAGQAPFEG--EDEDELFQSIMEHNVAYP----KSMSKEAVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             --STHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred             --CCcccccchHHHHHHHHcCCCCCCC--CCHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHhhcCHHHcCCC
Confidence              8999999999999999999999974  456777777776544333    3578999999999999999999964

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.94  E-value=4.6e-27  Score=229.18  Aligned_cols=157  Identities=22%  Similarity=0.309  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++................||+.|+|||++.+..+
T Consensus       106 ~~~~i~~qi~~aL~~LH~~giv-H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  184 (323)
T 3tki_A          106 DAQRFFHQLMAGVVYLHGIGIT-HRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREF  184 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSB
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-ccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCC
Confidence            3689999999999999999988 999999999999999999999999876543333233345678999999999976542


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        .+.++|||||||++|+|++|..||.................. ..+  ....+++.+.+++.+||+.||++|||+.++
T Consensus       185 --~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~li~~~L~~dP~~R~t~~ei  259 (323)
T 3tki_A          185 --HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKT-YLN--PWKKIDSAPLALLHKILVENPSARITIPDI  259 (323)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCT-TST--TGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             --CCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccc-cCC--ccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              267899999999999999999999765443333333332221 111  123578999999999999999999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       260 l~h  262 (323)
T 3tki_A          260 KKD  262 (323)
T ss_dssp             TTC
T ss_pred             hhC
Confidence            753

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.94  E-value=9.1e-27  Score=221.31  Aligned_cols=155  Identities=24%  Similarity=0.511  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++.......     ....++..|+|||.+.+..+ 
T Consensus       119 ~~~~~~~i~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~-  191 (278)
T 1byg_A          119 LLKFSLDVCEAMEYLEGNNFV-HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKF-  191 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECTTSCEEECCCCC-----------------CCTTTSCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccCCCcceEEEeCCCcEEEeeccccccccccc-----cCCCccccccCHHHhCCCCC-
Confidence            578999999999999999998 99999999999999999999999987543221     23356778999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|||++ |..||...  ...++...+..+..  +. ....+++.+.+++.+||+.||++||++.++
T Consensus       192 --~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~~~~~--~~-~~~~~~~~l~~li~~~l~~~p~~Rps~~~l  264 (278)
T 1byg_A          192 --STKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVEKGYK--MD-APDGCPPAVYEVMKNCWHLDAAMRPSFLQL  264 (278)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHTTTCC--CC-CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhcCCC--CC-CcccCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence              899999999999999998 99999743  34555666655422  22 234678999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ++.|+.+...
T Consensus       265 ~~~L~~i~~~  274 (278)
T 1byg_A          265 REQLEHIKTH  274 (278)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988653

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1.3e-26  Score=224.22  Aligned_cols=163  Identities=18%  Similarity=0.224  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......+++.|+|||.+.+..+
T Consensus       135 ~~~~i~~qi~~~l~~lH~~~i~-H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~  212 (309)
T 2h34_A          135 RAVAIVRQIGSALDAAHAAGAT-HRDVKPENILVSADDFAYLVDFGIASATTDEKL-TQLGNTVGTLYYMAPERFSESHA  212 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTSCEEECSCCC-----------------CCGGGCCGGGTCC---
T ss_pred             HHHHHHHHHHHHHHHHHHCcCC-cCCCChHHEEEcCCCCEEEecCccCcccccccc-ccccccCCCcCccCHHHHcCCCC
Confidence            3689999999999999999998 999999999999999999999999876533221 12234568889999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-CHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-DLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-t~~~  182 (423)
                         +.++||||||+++|||++|..||...  ....+...+.. ....+......+++.+.+++.+||+.||++|| ++.+
T Consensus       213 ---~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~  286 (309)
T 2h34_A          213 ---TYRADIYALTCVLYECLTGSPPYQGD--QLSVMGAHINQ-AIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGD  286 (309)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSSCSSCSC--HHHHHHHHHHS-CCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred             ---CchHhHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHhcc-CCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHH
Confidence               88999999999999999999999743  22233333333 22223233446888999999999999999999 9999


Q ss_pred             HHHHHHHHhhhc
Q psy1840         183 VHHKLKEMNAGL  194 (423)
Q Consensus       183 I~~~L~~i~~~~  194 (423)
                      +.+.|+......
T Consensus       287 l~~~l~~~l~~~  298 (309)
T 2h34_A          287 LSAAAHAALATA  298 (309)
T ss_dssp             HHHHHHHTCC--
T ss_pred             HHHHHHHHHHhh
Confidence            999998776544

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.94  E-value=9.4e-27  Score=246.19  Aligned_cols=159  Identities=26%  Similarity=0.484  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.||+.||.|||+++++ ||||||+|||++.++.+||+|||+++........ .......+++.|+|||++.+..+
T Consensus       438 ~~~i~~qi~~~L~~LH~~~ii-HrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~  516 (613)
T 2ozo_A          438 VAELLHQVSMGMKYLEEKNFV-HRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKF  516 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-cCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCC
Confidence            689999999999999999998 9999999999999999999999999865432211 11122345578999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |+.||..  ....++...+..+...  . .+..+++++.++|.+||+.||++||++.+
T Consensus       517 ---~~~sDvwSlGv~l~ellt~G~~Pf~~--~~~~~~~~~i~~~~~~--~-~p~~~~~~l~~li~~cl~~dP~~RPs~~~  588 (613)
T 2ozo_A          517 ---SSRSDVWSYGVTMWEALSYGQKPYKK--MKGPEVMAFIEQGKRM--E-CPPECPPELYALMSDCWIYKWEDRPDFLT  588 (613)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCTTTT--CCSHHHHHHHHTTCCC--C-CCTTCCHHHHHHHHHTTCSSTTTSCCHHH
T ss_pred             ---CcHHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHcCCCC--C-CCCcCCHHHHHHHHHHcCCChhHCcCHHH
Confidence               899999999999999998 9999974  4456777777776432  2 22368999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      |++.|+.+..
T Consensus       589 l~~~L~~~~~  598 (613)
T 2ozo_A          589 VEQRMRACYY  598 (613)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.94  E-value=4.2e-27  Score=227.71  Aligned_cols=162  Identities=22%  Similarity=0.330  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.|++.||.|||++|++ ||||||+||+++.++.+||+|||++......... .......|++.|+|||.+.+..
T Consensus       117 ~~~~~~~qi~~~l~~lH~~~iv-H~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  195 (311)
T 3ork_A          117 RAIEVIADACQALNFSHQNGII-HRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDS  195 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCC-cCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCC
Confidence            3689999999999999999998 9999999999999999999999998765433221 2223456899999999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.++||||||+++|||++|+.||..  ....+............+......++.++.+++.+||+.||++||+..+
T Consensus       196 ~---~~~~Di~slG~~l~~ll~g~~pf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~  270 (311)
T 3ork_A          196 V---DARSDVYSLGCVLYEVLTGEPPFTG--DSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAA  270 (311)
T ss_dssp             C---CHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHH
T ss_pred             C---CchHhHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHH
Confidence            5   8999999999999999999999974  3444554444444333332223467899999999999999999997655


Q ss_pred             H-HHHHHHHh
Q psy1840         183 V-HHKLKEMN  191 (423)
Q Consensus       183 I-~~~L~~i~  191 (423)
                      + .+.+....
T Consensus       271 ~l~~~l~~~~  280 (311)
T 3ork_A          271 EMRADLVRVH  280 (311)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4 44444443

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.94  E-value=5e-27  Score=228.36  Aligned_cols=175  Identities=21%  Similarity=0.320  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc----------ccccccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSE--IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG----------QERKLRRRKLY   92 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~----------~~~~~~gt~~y   92 (423)
                      ...++.||+.||.|||+.|  ++ ||||||+||+++.++.+||+|||++..........          ......+++.|
T Consensus       138 ~~~i~~qi~~~l~~LH~~~~~iv-H~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y  216 (337)
T 3ll6_A          138 VLKIFYQTCRAVQHMHRQKPPII-HRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMY  216 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCB-CCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC------------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEE-EccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCc
Confidence            6899999999999999998  88 99999999999999999999999987654322111          11234588899


Q ss_pred             cCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhc
Q psy1840          93 KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEE  172 (423)
Q Consensus        93 ~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~  172 (423)
                      +|||.+.......++.++|||||||++|||++|+.||....  ...+.    ......+  ....++..+.+++.+||+.
T Consensus       217 ~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~--~~~~~----~~~~~~~--~~~~~~~~~~~li~~~l~~  288 (337)
T 3ll6_A          217 RTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGA--KLRIV----NGKYSIP--PHDTQYTVFHSLIRAMLQV  288 (337)
T ss_dssp             -------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------------------CCCC--TTCCSSGGGHHHHHHHSCS
T ss_pred             CChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchh--HHHhh----cCcccCC--cccccchHHHHHHHHHccC
Confidence            99999843222234889999999999999999999996421  11111    1111111  1235677899999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q psy1840         173 DPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEK  208 (423)
Q Consensus       173 dP~~RPt~~~I~~~L~~i~~~~~~~~~d~~~~~~e~  208 (423)
                      ||++||++.++++.|+.+......+....+...+++
T Consensus       289 ~p~~Rps~~e~l~~l~~~~~~~~~~~~~~~~~~~~~  324 (337)
T 3ll6_A          289 NPEERLSIAEVVHQLQEIAAARNVNPKSPITELLEQ  324 (337)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHHTTCCTTSCCHHHHTC
T ss_pred             ChhhCcCHHHHHHHHHHHHhccCCCCCccHHHHHHH
Confidence            999999999999999998876655544444444443

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.94  E-value=1e-26  Score=226.50  Aligned_cols=160  Identities=29%  Similarity=0.452  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++.....   .......+++.|+|||.+.+..+
T Consensus       143 ~~~~i~~qi~~aL~~LH~~~iv-H~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~  218 (327)
T 1fvr_A          143 QLLHFAADVARGMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVY  218 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECGGGCEEECCTTCEESSCEE---CCC----CCTTTCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-CCCCccceEEEcCCCeEEEcccCcCcccccc---ccccCCCCCccccChhhhccccC
Confidence            3689999999999999999998 9999999999999999999999998643211   11123456778999999977654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++||||||+++|||++ |..||..  ....++...+..+....   ....+++.+.+++.+||+.||.+|||+.+
T Consensus       219 ---~~~~Di~slG~il~ellt~g~~pf~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~e  290 (327)
T 1fvr_A          219 ---TTNSDVWSYGVLLWEIVSLGGTPYCG--MTCAELYEKLPQGYRLE---KPLNCDDEVYDLMRQCWREKPYERPSFAQ  290 (327)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHGGGTCCCC---CCTTBCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhcchHHHHHHHHHHcCCCCCCCC--CcHHHHHHHhhcCCCCC---CCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence               899999999999999998 9999974  45566777766653221   22368899999999999999999999999


Q ss_pred             HHHHHHHHhhhcC
Q psy1840         183 VHHKLKEMNAGLK  195 (423)
Q Consensus       183 I~~~L~~i~~~~~  195 (423)
                      +++.|..+....+
T Consensus       291 ll~~L~~~~~~~~  303 (327)
T 1fvr_A          291 ILVSLNRMLEERK  303 (327)
T ss_dssp             HHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHhhc
Confidence            9999988876543

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.94  E-value=6.9e-27  Score=230.31  Aligned_cols=148  Identities=24%  Similarity=0.359  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++......  .......||+.|+|||++.+..+ 
T Consensus       120 ~~~~~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  195 (345)
T 1xjd_A          120 ATFYAAEIILGLQFLHSKGIV-YRDLKLDNILLDKDGHIKIADFGMCKENMLGD--AKTNTFCGTPDYIAPEILLGQKY-  195 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCSCGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eCCCChhhEEECCCCCEEEeEChhhhhcccCC--CcccCCCCCcccCChhhhcCCCC-
Confidence            578999999999999999998 99999999999999999999999987542221  12345689999999999988655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH-HH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR-FV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~-~I  183 (423)
                        +.++|+|||||++|||++|..||..  .+..++...+..+....|    ..+++++.+++.+||+.||.+||++. +|
T Consensus       196 --~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~lL~~dp~~R~~~~~~i  267 (345)
T 1xjd_A          196 --NHSVDWWSFGVLLYEMLIGQSPFHG--QDEEELFHSIRMDNPFYP----RWLEKEAKDLLVKLFVREPEKRLGVRGDI  267 (345)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred             --CChhhhHHHHHHHHHHhcCCCCCCC--CCHHHHHHHHHhCCCCCC----cccCHHHHHHHHHHhcCCHhHcCCChHHH
Confidence              8999999999999999999999974  456777777776544333    35789999999999999999999986 54


Q ss_pred             H
Q psy1840         184 H  184 (423)
Q Consensus       184 ~  184 (423)
                      +
T Consensus       268 ~  268 (345)
T 1xjd_A          268 R  268 (345)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.94  E-value=1.7e-26  Score=226.11  Aligned_cols=158  Identities=16%  Similarity=0.162  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc--cEEEeccCCcccccCCCc--ccccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW--VLQIADFGLHAFKAGQDE--TGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~--~vKL~DFGla~~~~~~~~--~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++  .+||+|||++........  ........|++.|+|||.+.+
T Consensus       170 ~~~i~~qi~~~l~~LH~~~iv-H~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  248 (345)
T 3hko_A          170 ISNIMRQIFSALHYLHNQGIC-HRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNT  248 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhcc
Confidence            457999999999999999988 999999999998766  899999999875432211  112245578999999999975


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ... .++.++|||||||++|||++|..||..  ....+....+.......+......+++.+.+++.+||+.||.+||++
T Consensus       249 ~~~-~~~~~~DiwslG~il~el~~g~~pf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  325 (345)
T 3hko_A          249 TNE-SYGPKCDAWSAGVLLHLLLMGAVPFPG--VNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDA  325 (345)
T ss_dssp             SSS-CCCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCH
T ss_pred             CCC-CCCcHHHHHHHHHHHHHHHHCCCCCCC--CChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCH
Confidence            321 348899999999999999999999974  34556666666544333332233578999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       326 ~~~l~h  331 (345)
T 3hko_A          326 MRALQH  331 (345)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999774

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.94  E-value=1e-26  Score=221.99  Aligned_cols=161  Identities=25%  Similarity=0.448  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       122 ~~~~~~~~i~~~l~~lH~~~i~-H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  200 (291)
T 1u46_A          122 TLSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRT  200 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-cCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCC
Confidence            3678999999999999999988 9999999999999999999999998765433221 1123345677899999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++||||||+++|+|++ |..||..  ....++...+.......+  ....++.++.+++.+||+.||++|||+.
T Consensus       201 ~---~~~~Di~slG~il~~l~~~g~~p~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~~p~~Rps~~  273 (291)
T 1u46_A          201 F---SHASDTWMFGVTLWEMFTYGQEPWIG--LNGSQILHKIDKEGERLP--RPEDCPQDIYNVMVQCWAHKPEDRPTFV  273 (291)
T ss_dssp             E---EHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTSCCCCC--CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             C---CchhhHHHHHHHHHHHHhCCCCCccc--CCHHHHHHHHHccCCCCC--CCcCcCHHHHHHHHHHccCCcccCcCHH
Confidence            4   889999999999999999 9999974  455666766665433222  2246889999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy1840         182 FVHHKLKEMNA  192 (423)
Q Consensus       182 ~I~~~L~~i~~  192 (423)
                      ++++.|+++..
T Consensus       274 ~l~~~l~~~~~  284 (291)
T 1u46_A          274 ALRDFLLEAQP  284 (291)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhCc
Confidence            99999988764

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.94  E-value=1.3e-26  Score=221.73  Aligned_cols=155  Identities=20%  Similarity=0.257  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++........  ......+|+.|+|||.+.+.. 
T Consensus       101 ~~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~-  176 (288)
T 1ob3_A          101 TAKSFLLQLLNGIAYCHDRRVL-HRDLKPQNLLINREGELKIADFGLARAFGIPVR--KYTHEIVTLWYRAPDVLMGSK-  176 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTSCEEECCTTHHHHHCC-----------CCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEEcCCCCEEEeECccccccCcccc--ccccccccccccCchheeCCC-
Confidence            3678999999999999999998 999999999999999999999999875432211  123446789999999987643 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--CCC-------------CCCCC----------CCCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--GSG-------------LRPDT----------SSLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--~~~-------------~~p~~----------~~~~~  158 (423)
                       .++.++|||||||++|||++|..||...  +..+....+..  +.+             ..+..          ....+
T Consensus       177 -~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
T 1ob3_A          177 -KYSTTIDIWSVGCIFAEMVNGTPLFPGV--SEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGL  253 (288)
T ss_dssp             -SCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSC
T ss_pred             -CCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhc
Confidence             2489999999999999999999999743  33333333321  000             00000          11347


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++++.+++.+||+.||++|||+.++++
T Consensus       254 ~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          254 DESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            889999999999999999999999875

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.94  E-value=3.8e-26  Score=229.03  Aligned_cols=146  Identities=18%  Similarity=0.315  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++......  ......+||+.|+|||++.+..+ 
T Consensus       155 ~~~~~~qi~~aL~~LH~~giv-HrDLKp~NILl~~~g~ikL~DFGla~~~~~~~--~~~~~~~gt~~Y~aPE~l~~~~~-  230 (396)
T 4dc2_A          155 ARFYSAEISLALNYLHERGII-YRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDY-  230 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCBCGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-eccCCHHHEEECCCCCEEEeecceeeecccCC--CccccccCCcccCCchhhcCCCC-
Confidence            568899999999999999998 99999999999999999999999987532221  22345689999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC-------CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR-------MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~-------~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                        +.++|||||||++|||++|+.||....       .....+...+.......|    ..+++++.+++++||+.||.+|
T Consensus       231 --~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~lL~~dP~~R  304 (396)
T 4dc2_A          231 --GFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP----RSLSVKAASVLKSFLNKDPKER  304 (396)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSCTTTS
T ss_pred             --ChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCC----CcCCHHHHHHHHHHhcCCHhHc
Confidence              899999999999999999999996432       122334555555443333    2578999999999999999999


Q ss_pred             CCH
Q psy1840         178 PDL  180 (423)
Q Consensus       178 Pt~  180 (423)
                      |++
T Consensus       305 ~~~  307 (396)
T 4dc2_A          305 LGC  307 (396)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            985

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.94  E-value=1.2e-26  Score=226.01  Aligned_cols=160  Identities=23%  Similarity=0.462  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC---CccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS---RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~---~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.   +..+||+|||++................+++.|+|||.+.+
T Consensus       141 ~~~~i~~qi~~al~~LH~~~i~-H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  219 (327)
T 2yfx_A          141 DLLHVARDIACGCQYLEENHFI-HRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFME  219 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCee-cCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcC
Confidence            3689999999999999999998 9999999999984   45699999999875433322222234567888999999977


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      ..+   +.++||||||+++|+|++ |..||..  ....++...+..+....+   ...++..+.+++.+||+.||.+||+
T Consensus       220 ~~~---~~~~Di~slG~il~ellt~g~~p~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps  291 (327)
T 2yfx_A          220 GIF---TSKTDTWSFGVLLWEIFSLGYMPYPS--KSNQEVLEFVTSGGRMDP---PKNCPGPVYRIMTQCWQHQPEDRPN  291 (327)
T ss_dssp             CCC---CHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             CCC---CchhhHHHHHHHHHHHHcCCCCCCCC--cCHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHhcCChhhCcC
Confidence            654   899999999999999998 8899974  345667777766543222   2367899999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy1840         180 LRFVHHKLKEMNA  192 (423)
Q Consensus       180 ~~~I~~~L~~i~~  192 (423)
                      +.+|++.|..+..
T Consensus       292 ~~~ll~~l~~~~~  304 (327)
T 2yfx_A          292 FAIILERIEYCTQ  304 (327)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987754

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.94  E-value=1.5e-26  Score=230.20  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE--cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLI--DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl--d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+|||+  +.++.+||+|||+++.......   .....||+.|+|||++.+.
T Consensus       188 ~~~~i~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~  263 (373)
T 2x4f_A          188 DTILFMKQICEGIRHMHQMYIL-HLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---LKVNFGTPEFLAPEVVNYD  263 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---CCCCCSSCTTCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---cccccCCCcEeChhhccCC
Confidence            3678999999999999999988 99999999999  5678999999999876543322   2345689999999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .+   +.++|||||||++|||++|..||.+  ....+.+..+.......+......+++++.+++.+||+.||.+|||+.
T Consensus       264 ~~---~~~~DiwslG~il~elltg~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~  338 (373)
T 2x4f_A          264 FV---SFPTDMWSVGVIAYMLLSGLSPFLG--DNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISAS  338 (373)
T ss_dssp             BC---CHHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CC---CcHHhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHH
Confidence            54   8899999999999999999999974  345666666665543333322346789999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       339 e~l~h  343 (373)
T 2x4f_A          339 EALKH  343 (373)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            99873

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.94  E-value=1.3e-26  Score=245.94  Aligned_cols=160  Identities=25%  Similarity=0.457  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++........ .......++..|+|||++.+..+
T Consensus       471 ~~~i~~qi~~~L~yLH~~~ii-HrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~  549 (635)
T 4fl3_A          471 IIELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKF  549 (635)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-CCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCC
Confidence            689999999999999999998 9999999999999999999999998765433221 12233446678999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |+.||.+  ....++...+..+....  . +..++.++.++|.+||+.||++||++.+
T Consensus       550 ---~~~sDvwSlGv~l~ellt~G~~Pf~~--~~~~~~~~~i~~~~~~~--~-p~~~~~~l~~li~~cl~~dP~~RPs~~~  621 (635)
T 4fl3_A          550 ---SSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKGERMG--C-PAGCPREMYDLMNLCWTYDVENRPGFAA  621 (635)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTCCCC--C-CTTCCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             ---CcHHHHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCCC--C-CCCCCHHHHHHHHHHcCCCHhHCcCHHH
Confidence               899999999999999998 9999974  45677777777654322  1 2368999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy1840         183 VHHKLKEMNAG  193 (423)
Q Consensus       183 I~~~L~~i~~~  193 (423)
                      |++.|+.+...
T Consensus       622 l~~~L~~~~~~  632 (635)
T 4fl3_A          622 VELRLRNYYYD  632 (635)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.94  E-value=1.4e-26  Score=225.87  Aligned_cols=154  Identities=21%  Similarity=0.319  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC---CccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS---RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~---~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.   ++.+||+|||++........   .....|++.|+|||++.+
T Consensus       132 ~~~~i~~ql~~~L~~LH~~giv-H~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~  207 (327)
T 3lm5_A          132 DVIRLIKQILEGVYYLHQNNIV-HLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACE---LREIMGTPEYLAPEILNY  207 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEESCBTTBCCEEECCGGGCEEC------------CCCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCcCChHHEEEecCCCCCcEEEeeCccccccCCccc---cccccCCcCccCCeeecC
Confidence            3689999999999999999988 9999999999987   78999999999876532221   234578999999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+   +.++||||||+++|+|++|..||..  ....+....+.......+......+++.+.+++.+||+.||++|||+
T Consensus       208 ~~~---~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  282 (327)
T 3lm5_A          208 DPI---TTATDMWNIGIIAYMLLTHTSPFVG--EDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTA  282 (327)
T ss_dssp             CCC---CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             CCC---CchhhHHHHHHHHHHHHhCCCCCCC--CCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCH
Confidence            655   8999999999999999999999974  34555666665554444444445789999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       283 ~~ll~h  288 (327)
T 3lm5_A          283 EICLSH  288 (327)
T ss_dssp             HHHTTC
T ss_pred             HHHhCC
Confidence            998763

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.94  E-value=4.2e-26  Score=227.90  Aligned_cols=152  Identities=20%  Similarity=0.310  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||++.......   ......||+.|+|||++.+....
T Consensus       117 ~~~~~~qi~~aL~~LH~~giv-HrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~---~~~~~~gt~~Y~aPE~~~~~~~~  192 (384)
T 4fr4_A          117 VKLFICELVMALDYLQNQRII-HRDMKPDNILLDEHGHVHITDFNIAAMLPRET---QITTMAGTKPYMAPEMFSSRKGA  192 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECCTTC---CBCCCCSCGGGCCGGGTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHCCce-eccCcHHHeEECCCCCEEEeccceeeeccCCC---ceeccCCCccccCCeeeccCCCC
Confidence            578999999999999999988 99999999999999999999999997654322   22456799999999999754322


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC-CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-HHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR-MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-LRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~-~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-~~~  182 (423)
                      .++.++|||||||++|||++|..||.... ....++...+.......|    ..+++.+.+++.+||+.||.+||+ +.+
T Consensus       193 ~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p----~~~s~~~~~li~~lL~~dP~~R~s~~~~  268 (384)
T 4fr4_A          193 GYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYP----SAWSQEMVSLLKKLLEPNPDQRFSQLSD  268 (384)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHSCSSGGGSCCSHHH
T ss_pred             CCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCC----CcCCHHHHHHHHHHhcCCHhHhcccHHH
Confidence            34899999999999999999999997532 334555555555433333    357899999999999999999998 666


Q ss_pred             HH
Q psy1840         183 VH  184 (423)
Q Consensus       183 I~  184 (423)
                      |.
T Consensus       269 l~  270 (384)
T 4fr4_A          269 VQ  270 (384)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.94  E-value=1.5e-26  Score=231.34  Aligned_cols=154  Identities=17%  Similarity=0.292  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC--CccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS--RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~--~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.  .+.+||+|||++........   .....||+.|+|||++.+.
T Consensus       150 ~~~~i~~qi~~aL~~LH~~giv-HrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~  225 (387)
T 1kob_A          150 EVINYMRQACEGLKHMHEHSIV-HLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIVDRE  225 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC---EEEECSSGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-ecccchHHeEEecCCCCceEEEecccceecCCCcc---eeeeccCCCccCchhccCC
Confidence            3689999999999999999988 9999999999974  57899999999876543221   2344689999999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .+   +.++|||||||++|||++|..||..  ....+....+.......+......+++++.+++.+||+.||++|||+.
T Consensus       226 ~~---~~~~DiwSlG~il~elltg~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  300 (387)
T 1kob_A          226 PV---GFYTDMWAIGVLGYVLLSGLSPFAG--EDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVH  300 (387)
T ss_dssp             CB---CHHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CC---CCcccEeeHhHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            55   8999999999999999999999974  345666666666544433333456899999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       301 ell~h  305 (387)
T 1kob_A          301 DALEH  305 (387)
T ss_dssp             HHHTS
T ss_pred             HHhhC
Confidence            99864

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.94  E-value=2e-26  Score=223.03  Aligned_cols=164  Identities=25%  Similarity=0.385  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCC---cccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQD---ETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~---~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++ ++.+||+|||++.......   .........|++.|+|||.+.+
T Consensus       131 ~~~~i~~qi~~al~~lH~~~i~-H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~  208 (319)
T 2y4i_B          131 KTRQIAQEIVKGMGYLHAKGIL-HKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQ  208 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-ccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhh
Confidence            3689999999999999999998 999999999998 6899999999976542211   1112234457889999999875


Q ss_pred             CC------CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840         101 PH------LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus       101 ~~------~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      ..      ...++.++||||||+++|||++|..||..  ....++...+..+.  .+......++.++.+++.+||+.||
T Consensus       209 ~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~~~p  284 (319)
T 2y4i_B          209 LSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKT--QPAEAIIWQMGTGM--KPNLSQIGMGKEISDILLFCWAFEQ  284 (319)
T ss_dssp             BSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSS--CCHHHHHHHHHTTC--CCCCCCSSCCTTHHHHHHHHHCSST
T ss_pred             ccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHhccCC--CCCCCcCCCCHHHHHHHHHHhcCCh
Confidence            22      11348899999999999999999999974  44566666665543  3333334678899999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhh
Q psy1840         175 ELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       175 ~~RPt~~~I~~~L~~i~~~  193 (423)
                      ++|||+.++++.|+.+...
T Consensus       285 ~~Rpt~~~l~~~l~~l~~~  303 (319)
T 2y4i_B          285 EERPTFTKLMDMLEKLPKR  303 (319)
T ss_dssp             TTSCCHHHHHHHHTTC---
T ss_pred             hhCcCHHHHHHHHHHHHHh
Confidence            9999999999999877654

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.93  E-value=2.1e-26  Score=227.25  Aligned_cols=146  Identities=19%  Similarity=0.261  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++.....     .....||+.|+|||++.+..+ 
T Consensus       143 ~~~~~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~g~~kL~DFg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-  215 (350)
T 1rdq_E          143 ARFYAAQIVLTFEYLHSLDLI-YRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-----TWTLCGTPEALAPEIILSKGY-  215 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECSSC-----BCCCEECGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cccCccceEEECCCCCEEEcccccceeccCC-----cccccCCccccCHHHhcCCCC-
Confidence            578999999999999999988 9999999999999999999999998765332     234578999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-----  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-----  179 (423)
                        +.++|||||||++|||++|..||..  .+..++...+..+....|    ..+++++.+++.+||+.||.+||+     
T Consensus       216 --~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~lL~~dp~~R~~~~~~~  287 (350)
T 1rdq_E          216 --NKAVDWWALGVLIYEMAAGYPPFFA--DQPIQIYEKIVSGKVRFP----SHFSSDLKDLLRNLLQVDLTKRFGNLKNG  287 (350)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTCCHHHHHHHHHHSCSCTTTCTTSSTTT
T ss_pred             --CCcCCEecccHhHhHHhhCCCCCCC--CCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhhcCHHhccCCccCC
Confidence              8999999999999999999999974  456777777777654333    357899999999999999999998     


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.+|++
T Consensus       288 ~~ei~~  293 (350)
T 1rdq_E          288 VNDIKN  293 (350)
T ss_dssp             THHHHT
T ss_pred             HHHHHh
Confidence            777654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.93  E-value=8.6e-27  Score=242.74  Aligned_cols=161  Identities=25%  Similarity=0.476  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+++++ ||||||+|||++.++.+||+|||+++...... ........++..|+|||.+.+..+
T Consensus       364 ~~~~i~~qi~~~L~~LH~~~iv-HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~  441 (535)
T 2h8h_A          364 QLVDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNE-YTARQGAKFPIKWTAPEAALYGRF  441 (535)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-HHTTCSTTSCGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-CCCCCHhhEEEcCCCcEEEcccccceecCCCc-eecccCCcCcccccCHHHhccCCC
Confidence            3689999999999999999998 99999999999999999999999987653221 111123345678999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||.+  ....++...+..+...  .. ...++..+.+||.+||+.||++|||+.+
T Consensus       442 ---~~~sDvwSlGv~l~el~t~g~~P~~~--~~~~~~~~~i~~~~~~--~~-~~~~~~~l~~li~~cl~~dP~~RPt~~~  513 (535)
T 2h8h_A          442 ---TIKSDVWSFGILLTELTTKGRVPYPG--MVNREVLDQVERGYRM--PC-PPECPESLHDLMCQCWRKEPEERPTFEY  513 (535)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTTTCCSSTT--CCHHHHHHHHHTTCCC--CC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCC--CC-CCCCCHHHHHHHHHHcCCChhHCcCHHH
Confidence               899999999999999999 8999974  4567777777765322  21 2368899999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q psy1840         183 VHHKLKEMNAGL  194 (423)
Q Consensus       183 I~~~L~~i~~~~  194 (423)
                      |++.|+.+....
T Consensus       514 l~~~L~~~~~~~  525 (535)
T 2h8h_A          514 LQAFLEDYFTST  525 (535)
T ss_dssp             HHHHHHTSSCCC
T ss_pred             HHHHHHHHhhcc
Confidence            999998876544

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.93  E-value=3.4e-26  Score=222.82  Aligned_cols=146  Identities=19%  Similarity=0.268  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++.....     .....||+.|+|||++.+..+ 
T Consensus       108 ~~~~~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-  180 (318)
T 1fot_A          108 AKFYAAEVCLALEYLHSKDII-YRDLKPENILLDKNGHIKITDFGFAKYVPDV-----TYTLCGTPDYIAPEVVSTKPY-  180 (318)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CCCCCGGGEEECTTSCEEECCCSSCEECSSC-----BCCCCSCTTTCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCChheEEEcCCCCEEEeecCcceecCCc-----cccccCCccccCHhHhcCCCC-
Confidence            568899999999999999988 9999999999999999999999998765322     234678999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++|+|||||++|||++|..||..  .+..+....+..+....|    ..+++++.+++.+||..||.+||     +
T Consensus       181 --~~~~DiwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~lL~~dp~~R~~~~~~~  252 (318)
T 1fot_A          181 --NKSIDWWSFGILIYEMLAGYTPFYD--SNTMKTYEKILNAELRFP----PFFNEDVKDLLSRLITRDLSQRLGNLQNG  252 (318)
T ss_dssp             --CTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSCTTTCTTSSTTT
T ss_pred             --CcccchhhhHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHhccCHHHcCCCcCCC
Confidence              8999999999999999999999974  345666677766543333    25789999999999999999999     7


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.+|++
T Consensus       253 ~~~i~~  258 (318)
T 1fot_A          253 TEDVKN  258 (318)
T ss_dssp             THHHHT
T ss_pred             HHHHhc
Confidence            777764

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.93  E-value=1.1e-26  Score=228.49  Aligned_cols=158  Identities=20%  Similarity=0.246  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC----ccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR----WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~----~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      ....++.||+.||.|||++|++ ||||||+||++...    +.+||+|||+++.......  ......+|+.|+|||++.
T Consensus       117 ~~~~~~~qi~~al~~lH~~giv-HrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~  193 (342)
T 2qr7_A          117 EASAVLFTITKTVEYLHAQGVV-HRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG--LLMTPCYTANFVAPEVLE  193 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTC--CBCCSSCCSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCcE-eccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCC--ceeccCCCccccCHHHhc
Confidence            3679999999999999999988 99999999998432    4699999999876543322  223557899999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCC-CCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHL-RMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~-~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      +..+   +.++|||||||++|||++|..||... ..+..++...+..+....+......+++++.+++.+||..||++||
T Consensus       194 ~~~~---~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  270 (342)
T 2qr7_A          194 RQGY---DAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRL  270 (342)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSC
T ss_pred             CCCC---CCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCc
Confidence            7554   78999999999999999999999753 3456778888877665544444456899999999999999999999


Q ss_pred             CHHHHHHHH
Q psy1840         179 DLRFVHHKL  187 (423)
Q Consensus       179 t~~~I~~~L  187 (423)
                      ++.++++.-
T Consensus       271 t~~~il~hp  279 (342)
T 2qr7_A          271 TAALVLRHP  279 (342)
T ss_dssp             CHHHHTTSH
T ss_pred             CHHHHhcCC
Confidence            999987643

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.93  E-value=4.6e-26  Score=222.37  Aligned_cols=150  Identities=18%  Similarity=0.245  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++......  .......||+.|+|||++.+..+
T Consensus       122 ~~~~~~~qi~~al~~lH~~~iv-H~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~  198 (327)
T 3a62_A          122 TACFYLAEISMALGHLHQKGII-YRDLKPENIMLNHQGHVKLTDFGLCKESIHDG--TVTHTFCGTIEYMAPEILMRSGH  198 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCTTTEEECTTSCEEECCCSCC------------CTTSSCCTTSCHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCEE-cccCCHHHeEECCCCcEEEEeCCcccccccCC--ccccccCCCcCccCHhhCcCCCC
Confidence            3578999999999999999998 99999999999999999999999987533221  12234578999999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----  178 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----  178 (423)
                         +.++|||||||++|||++|..||..  .+..+....+.......|    ..++.++.+++.+||+.||.+||     
T Consensus       199 ---~~~~DiwslG~il~el~~g~~pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~~L~~dp~~R~~~~~~  269 (327)
T 3a62_A          199 ---NRAVDWWSLGALMYDMLTGAPPFTG--ENRKKTIDKILKCKLNLP----PYLTQEARDLLKKLLKRNAASRLGAGPG  269 (327)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCCCC----TTSCHHHHHHHHHHSCSCGGGSTTSSTT
T ss_pred             ---CCcccchhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHhcCHhhccCCCCC
Confidence               8999999999999999999999974  345666666666543333    25789999999999999999999     


Q ss_pred             CHHHHHH
Q psy1840         179 DLRFVHH  185 (423)
Q Consensus       179 t~~~I~~  185 (423)
                      ++.++++
T Consensus       270 ~~~e~l~  276 (327)
T 3a62_A          270 DAGEVQA  276 (327)
T ss_dssp             THHHHHH
T ss_pred             CHHHHHc
Confidence            6677665

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.93  E-value=3.3e-26  Score=232.84  Aligned_cols=150  Identities=19%  Similarity=0.288  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||+|||+ .|++ ||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+..+
T Consensus       250 ~~~~~~qi~~aL~~LH~~~gii-HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~  326 (446)
T 4ejn_A          250 ARFYGAEIVSALDYLHSEKNVV-YRDLKLENLMLDKDGHIKITDFGLCKEGIKDG--ATMKTFCGTPEYLAPEVLEDNDY  326 (446)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCC-CCCCCGGGEEECSSSCEEECCCCCCCTTCC-------CCSSSCGGGCCHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHhhcCCEE-ECCCCHHHEEECCCCCEEEccCCCceeccCCC--cccccccCCccccCHhhcCCCCC
Confidence            57899999999999998 8998 99999999999999999999999987533222  12245679999999999987665


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----  178 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----  178 (423)
                         +.++|||||||++|||++|+.||..  ....++...+.......|    ..+++++.+++.+||+.||.+||     
T Consensus       327 ---~~~~DiwslG~il~ell~g~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~~~~~~~li~~~L~~dP~~R~~~~~~  397 (446)
T 4ejn_A          327 ---GRAVDWWGLGVVMYEMMCGRLPFYN--QDHEKLFELILMEEIRFP----RTLGPEAKSLLSGLLKKDPKQRLGGGSE  397 (446)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             ---CCccchhhhHHHHHHHhhCCCCCCC--CCHHHHHHHHHhCCCCCC----ccCCHHHHHHHHHHcccCHHHhCCCCCC
Confidence               8999999999999999999999974  445666777665543333    25789999999999999999999     


Q ss_pred             CHHHHHHH
Q psy1840         179 DLRFVHHK  186 (423)
Q Consensus       179 t~~~I~~~  186 (423)
                      ++.++++.
T Consensus       398 t~~ell~h  405 (446)
T 4ejn_A          398 DAKEIMQH  405 (446)
T ss_dssp             THHHHHTS
T ss_pred             CHHHHHhC
Confidence            99988753

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.93  E-value=3.6e-26  Score=219.74  Aligned_cols=155  Identities=19%  Similarity=0.292  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+...
T Consensus       110 ~~~~~~~qi~~al~~LH~~~i~-H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  188 (305)
T 2wtk_C          110 QAHGYFCQLIDGLEYLHSQGIV-HKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDT  188 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-ecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCccc
Confidence            3678999999999999999988 999999999999999999999999876543322223345568899999999876431


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                       ..+.++||||||+++|||++|..||..  ....++...+..+....+    ..+++.+.+++.+||+.||.+|||+.++
T Consensus       189 -~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~i~~~~~~~~----~~~~~~l~~li~~~l~~dp~~Rps~~~l  261 (305)
T 2wtk_C          189 -FSGFKVDIWSAGVTLYNITTGLYPFEG--DNIYKLFENIGKGSYAIP----GDCGPPLSDLLKGMLEYEPAKRFSIRQI  261 (305)
T ss_dssp             -EESHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHCCCCCC----SSSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             -CCcchhhHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHhcCCCCCC----CccCHHHHHHHHHHccCChhhCCCHHHH
Confidence             226799999999999999999999974  345666677766543222    3578999999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       262 l~~  264 (305)
T 2wtk_C          262 RQH  264 (305)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            875

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.93  E-value=1.7e-26  Score=220.15  Aligned_cols=159  Identities=24%  Similarity=0.478  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........ .......+++.|+|||.+.+..+ 
T Consensus       113 ~~~i~~~i~~~l~~lH~~~i~-H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~-  189 (288)
T 3kfa_A          113 LLYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKF-  189 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCC-CSCCSGGGEEECGGGCEEECCCCGGGTSCSSSS-EEETTEEECGGGCCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-CCCCCcceEEEcCCCCEEEccCccceeccCCcc-ccccCCccccCcCChhhhccCCC-
Confidence            678999999999999999998 999999999999999999999999876543322 22233456778999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++||||||+++|+|++ |..||...  ....+...+......  . ....+++.+.+++.+||+.||.+|||+.++
T Consensus       190 --~~~~Di~slG~il~~ll~~g~~p~~~~--~~~~~~~~~~~~~~~--~-~~~~~~~~l~~li~~~l~~dp~~Rps~~~~  262 (288)
T 3kfa_A          190 --SIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEKDYRM--E-RPEGCPEKVYELMRACWQWNPSDRPSFAEI  262 (288)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTTCCC--C-CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhccCCC--C-CCCCCCHHHHHHHHHHhCCChhhCcCHHHH
Confidence              899999999999999999 89999753  334455555543221  1 224678999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ++.|+.+...
T Consensus       263 ~~~l~~~~~~  272 (288)
T 3kfa_A          263 HQAFETMFQE  272 (288)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887653

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.93  E-value=2e-26  Score=226.25  Aligned_cols=152  Identities=20%  Similarity=0.275  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......||+.|+|||.+.+..+
T Consensus       109 ~~~~i~~qi~~aL~~LH~~giv-H~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~  184 (336)
T 3h4j_B          109 EGRRFFQQIICAIEYCHRHKIV-HRDLKPENLLLDDNLNVKIADFGLSNIMTDGN---FLKTSCGSPNYAAPEVINGKLY  184 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCC-CCCCSTTTEEECTTCCEEECCSSCTBTTTTSB---TTCCCTTSTTTSCGGGSCCSGG
T ss_pred             HHHHHHHHHHHHHHHHHHCCeE-ecCCchhhEEEcCCCCEEEEEeccceeccCCc---ccccccCCcCcCCHHHHcCCCC
Confidence            3679999999999999999998 99999999999999999999999987654322   2245578999999999987653


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        .+.++|||||||++|+|++|..||.....  .++...+..+...    .+..+++++.+++.+||+.||.+|||+.++
T Consensus       185 --~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~i~~~~~~----~p~~~s~~~~~li~~~L~~dP~~Rpt~~ei  256 (336)
T 3h4j_B          185 --AGPEVDVWSCGIVLYVMLVGRLPFDDEFI--PNLFKKVNSCVYV----MPDFLSPGAQSLIRRMIVADPMQRITIQEI  256 (336)
T ss_dssp             --GCHHHHHHHHHHHHHHHHHSSCSSBCSSS--TTCBCCCCSSCCC----CCTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             --CCCccchhHHHHHHHHHHhCCCCCCCccH--HHHHHHHHcCCCC----CcccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence              26899999999999999999999975322  1111112222111    223578999999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++.-
T Consensus       257 l~hp  260 (336)
T 3h4j_B          257 RRDP  260 (336)
T ss_dssp             TTCH
T ss_pred             HhCh
Confidence            7643

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.93  E-value=2.1e-26  Score=218.45  Aligned_cols=152  Identities=20%  Similarity=0.295  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE---cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLI---DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl---d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.|++.||.|||++|++ ||||||+||++   +.++.+||+|||++.......   ......+++.|+|||.+.+
T Consensus       107 ~~~~i~~~i~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~  182 (277)
T 3f3z_A          107 DAARIMKDVLSAVAYCHKLNVA-HRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK---MMRTKVGTPYYVSPQVLEG  182 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-CCCCCHHHEEEecCCCCCcEEEEecccceeccCcc---chhccCCCCCccChHHhcc
Confidence            3689999999999999999988 99999999999   888999999999987654322   2234568899999999876


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      . +   +.++||||||+++|+|++|..||..  ....+....+..+....|......+++.+.+++.+||+.||++||++
T Consensus       183 ~-~---~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~  256 (277)
T 3f3z_A          183 L-Y---GPECDEWSAGVMMYVLLCGYPPFSA--PTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITS  256 (277)
T ss_dssp             C-B---CTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             c-C---CchhhehhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCH
Confidence            4 3   8999999999999999999999974  45667777777665444433223578999999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .++++
T Consensus       257 ~~~l~  261 (277)
T 3f3z_A          257 LQALE  261 (277)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99876

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.93  E-value=1.2e-26  Score=238.44  Aligned_cols=167  Identities=14%  Similarity=0.243  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE---cCCccEEEeccCCcccccCCCcc-----cccccccCCccccCCc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI---DSRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAPE   96 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl---d~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE   96 (423)
                      .+.++.||+.||.|||++|++ ||||||+||||   +.++.+||+|||+++........     .......||..|+|||
T Consensus       105 ~~~i~~qi~~aL~yLH~~gIv-HrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE  183 (483)
T 3sv0_A          105 VLMLADQMINRVEFVHSKSFL-HRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVN  183 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHH
Confidence            689999999999999999988 99999999999   68899999999998865433221     1123567899999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcCCCCCC-CCCCCCchHHHHHHHHHhhhcCC
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQGSGLRP-DTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~~~~~p-~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      .+.+..+   +.++|||||||++|||++|+.||..... ...+.+..+.......+ ......++.++.+++.+||+.+|
T Consensus       184 ~~~~~~~---s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP  260 (483)
T 3sv0_A          184 THLGIEQ---SRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRF  260 (483)
T ss_dssp             HHTTCCC---CHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCT
T ss_pred             HhcCCCC---ChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCCh
Confidence            9988765   8999999999999999999999976433 23333333332110000 00113578999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhhcC
Q psy1840         175 ELRPDLRFVHHKLKEMNAGLK  195 (423)
Q Consensus       175 ~~RPt~~~I~~~L~~i~~~~~  195 (423)
                      ++||++.+|++.|+.+.....
T Consensus       261 ~~RPs~~el~~~L~~l~~~~~  281 (483)
T 3sv0_A          261 DDKPDYSYLKRLFRDLFIREG  281 (483)
T ss_dssp             TCCCCHHHHHHHHHHHHHHTT
T ss_pred             hhCcCHHHHHHHHHHHHHHcC
Confidence            999999999999998876543

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.93  E-value=2.6e-26  Score=219.85  Aligned_cols=156  Identities=16%  Similarity=0.113  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||++|++ ||||||+||+++.++.+||+|||++.......  .......+|+.|+|||.+.+.. 
T Consensus       102 ~~~~~~~ql~~~l~~lH~~~iv-H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~-  177 (292)
T 3o0g_A          102 IVKSFLFQLLKGLGFCHSRNVL-HRDLKPQNLLINRNGELKLANFGLARAFGIPV--RCYSAEVVTLWYRPPDVLFGAK-  177 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECCSCC--SCCCSCCSCGGGCCHHHHTTCS-
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEeecccceecCCcc--ccccCCccccCCcChHHHcCCC-
Confidence            3678999999999999999988 99999999999999999999999987653222  1223457789999999997654 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCC--------------------C-----CCCCCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR--------------------P-----DTSSLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~--------------------p-----~~~~~~~  158 (423)
                       .++.++|||||||++|||++|..||... ....+....+.......                    +     ......+
T Consensus       178 -~~~~~~DiwslG~il~~l~~~~~p~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (292)
T 3o0g_A          178 -LYSTSIDMWSAGCIFAELANAGRPLFPG-NDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKL  255 (292)
T ss_dssp             -CCCTHHHHHHHHHHHHHHTTTSCCSCCC-SSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTC
T ss_pred             -CcCchHHHHHHHHHHHHHHHcCCCCcCC-CCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhccccc
Confidence             2389999999999999999988886432 33344444433210000                    0     0011246


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++.+.+++.+||+.||++|||+.++++
T Consensus       256 ~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          256 NATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ChHHHHHHHHHhccChhhCCCHHHHhc
Confidence            889999999999999999999999876

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.93  E-value=4.4e-26  Score=216.70  Aligned_cols=150  Identities=22%  Similarity=0.287  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......    .....+++.|+|||.+.+...
T Consensus       110 ~~~~~~~qi~~~l~~LH~~~i~-H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~  184 (279)
T 3fdn_A          110 RTATYITELANALSYCHSKRVI-HRDIKPENLLLGSAGELKIADFGWSVHAPSSR----RTDLCGTLDYLPPEMIEGRMH  184 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCE-ECCCCGGGEEECTTSCEEECSCCEESCC------------CCCCTTCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCEe-cccCChHhEEEcCCCCEEEEeccccccCCccc----ccccCCCCCccCHhHhccCCC
Confidence            3679999999999999999998 99999999999999999999999875433221    234568899999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|+|++|..||..  ....+....+.......|    ..+++.+.+++.+||+.||.+|||+.++
T Consensus       185 ---~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~Rps~~e~  255 (279)
T 3fdn_A          185 ---DEKVDLWSLGVLCYEFLVGKPPFEA--NTYQETYKRISRVEFTFP----DFVTEGARDLISRLLKHNPSQRPMLREV  255 (279)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCCC----TTSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred             ---CccchhHhHHHHHHHHHHCCCCCCC--CcHHHHHHHHHhCCCCCC----CcCCHHHHHHHHHHhccChhhCCCHHHH
Confidence               8899999999999999999999974  445666666665443333    2478899999999999999999999999


Q ss_pred             HHHH
Q psy1840         184 HHKL  187 (423)
Q Consensus       184 ~~~L  187 (423)
                      ++.-
T Consensus       256 l~h~  259 (279)
T 3fdn_A          256 LEHP  259 (279)
T ss_dssp             HHCH
T ss_pred             hhCc
Confidence            8753

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.93  E-value=1.6e-26  Score=224.49  Aligned_cols=154  Identities=20%  Similarity=0.281  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+|+.|+|||++.+..  
T Consensus       110 ~~~~~~qi~~aL~~lH~~~iv-H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~--  184 (317)
T 2pmi_A          110 VKYFQWQLLQGLAFCHENKIL-HRDLKPQNLLINKRGQLKLGDFGLARAFGIPVN--TFSSEVVTLWYRAPDVLMGSR--  184 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCSSCEETTSCCC--CCCCCCSCCTTCCHHHHTTCC--
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eCCCChHHeEEcCCCCEEECcCccceecCCCcc--cCCCCcccccccCchHhhCCC--
Confidence            567899999999999999988 999999999999999999999999876532221  123456889999999987643  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CC-------------CCCC---------------CC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG-------------LRPD---------------TS  154 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~-------------~~p~---------------~~  154 (423)
                      .++.++|||||||++|||++|+.||..  ....+....+...  .+             ..+.               ..
T Consensus       185 ~~~~~~DiwslG~il~el~~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (317)
T 2pmi_A          185 TYSTSIDIWSCGCILAEMITGKPLFPG--TNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHT  262 (317)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGC
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccc
Confidence            238999999999999999999999974  3344444443221  00             0000               01


Q ss_pred             CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       155 ~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ...++.++.+++.+||+.||++|||+.++++
T Consensus       263 ~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          263 KEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             SSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence            1246789999999999999999999999875

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.93  E-value=2.1e-26  Score=223.16  Aligned_cols=155  Identities=20%  Similarity=0.199  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+|+.|+|||.+.+.. 
T Consensus       120 ~~~~~~~qi~~~l~~LH~~~iv-H~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~-  195 (311)
T 3niz_A          120 QIKIYLYQLLRGVAHCHQHRIL-HRDLKPQNLLINSDGALKLADFGLARAFGIPVR--SYTHEVVTLWYRAPDVLMGSK-  195 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-----CCCCCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCchHhEEECCCCCEEEccCcCceecCCCcc--cccCCcccCCcCCHHHhcCCC-
Confidence            3578999999999999999988 999999999999999999999999876532221  223456789999999987643 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--CCCCCC-----------------CC-------CCCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--GSGLRP-----------------DT-------SSLD  157 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--~~~~~p-----------------~~-------~~~~  157 (423)
                       .++.++|||||||++|+|++|+.||......  +....+..  +.+...                 ..       ....
T Consensus       196 -~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (311)
T 3niz_A          196 -KYSTSVDIWSIGCIFAEMITGKPLFPGVTDD--DQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPG  272 (311)
T ss_dssp             -SCCTHHHHHHHHHHHHHHHHSSCSCCCSSTT--THHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTT
T ss_pred             -CCCchHHhHHHHHHHHHHHhCCCCCCCCChH--HHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcc
Confidence             2389999999999999999999999754322  22222211  000000                 00       0124


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +++++.+++.+||+.||++|||+.++++
T Consensus       273 ~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          273 FCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             CCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             cCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            6788999999999999999999999876

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.93  E-value=2.5e-26  Score=228.72  Aligned_cols=146  Identities=19%  Similarity=0.235  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+..+ 
T Consensus       141 ~~~~~~qi~~aL~~LH~~giv-HrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  216 (373)
T 2r5t_A          141 ARFYAAEIASALGYLHSLNIV-YRDLKPENILLDSQGHIVLTDFGLCKENIEHN--STTSTFCGTPEYLAPEVLHKQPY-  216 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTSCEEECCCCBCGGGBCCC--CCCCSBSCCCCCCCHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHHHHHCCce-ecCCCHHHEEECCCCCEEEeeCccccccccCC--CccccccCCccccCHHHhCCCCC-
Confidence            467899999999999999998 99999999999999999999999987533222  12345689999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                        +.++|+|||||++|||++|..||..  .+..++...+.......+    ..++.++.+++.+||+.||.+||++.+
T Consensus       217 --~~~~DiwslG~il~ell~G~~Pf~~--~~~~~~~~~i~~~~~~~~----~~~~~~~~~li~~lL~~dp~~R~~~~~  286 (373)
T 2r5t_A          217 --DRTVDWWCLGAVLYEMLYGLPPFYS--RNTAEMYDNILNKPLQLK----PNITNSARHLLEGLLQKDRTKRLGAKD  286 (373)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTCC--SBHHHHHHHHHHSCCCCC----SSSCHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred             --CchhhhHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHHhcccCCC----CCCCHHHHHHHHHHcccCHHhCCCCCC
Confidence              8999999999999999999999974  455677777766543322    357899999999999999999999753

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.93  E-value=2.4e-26  Score=223.38  Aligned_cols=154  Identities=18%  Similarity=0.213  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc----cEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW----VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~----~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++    .+||+|||++........   .....|++.|+|||.+.
T Consensus       116 ~~~~i~~qi~~aL~~lH~~~iv-H~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~  191 (321)
T 2a2a_A          116 EATSFIKQILDGVNYLHTKKIA-HFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIVN  191 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCC---CCCCCSCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-cCCCChHHEEEecCCCCcCCEEEccCccceecCcccc---ccccCCCCCccCccccc
Confidence            3679999999999999999988 999999999999887    799999999876543221   23456889999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +..+   +.++||||||+++|+|++|..||..  ....+....+.......+......+++.+.+++.+||+.||++|||
T Consensus       192 ~~~~---~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  266 (321)
T 2a2a_A          192 YEPL---GLEADMWSIGVITYILLSGASPFLG--DTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLT  266 (321)
T ss_dssp             TCCC---CTHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCC
T ss_pred             CCCC---CCccccHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcC
Confidence            7655   8999999999999999999999974  4456666666665433332222457889999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       267 ~~e~l~h  273 (321)
T 2a2a_A          267 IQEALRH  273 (321)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9999763

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.93  E-value=3.9e-27  Score=227.97  Aligned_cols=172  Identities=19%  Similarity=0.245  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-------cccccccCCccccCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-------GQERKLRRRKLYKAP   95 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-------~~~~~~~gt~~y~AP   95 (423)
                      .....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.........       .......|++.|+||
T Consensus       134 ~~~~~i~~qi~~~L~~LH~~~iv-H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  212 (317)
T 2buj_A          134 DQILWLLLGICRGLEAIHAKGYA-HRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAP  212 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCG
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCH
Confidence            34689999999999999999988 9999999999999999999999987654321111       001233568899999


Q ss_pred             ccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCC
Q psy1840          96 ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus        96 E~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                      |.+.+.....++.++||||||+++|||++|+.||.........+...+... ...|.  ...+++.+.+++.+||+.||.
T Consensus       213 E~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~l~~li~~~l~~dp~  289 (317)
T 2buj_A          213 ELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ-LSIPQ--SPRHSSALWQLLNSMMTVDPH  289 (317)
T ss_dssp             GGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC---CCC--CTTSCHHHHHHHHHHTCSSGG
T ss_pred             hHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhcc-CCCCc--cccCCHHHHHHHHHHhhcChh
Confidence            998765422247899999999999999999999953111111122222221 11121  235789999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhhcCCCh
Q psy1840         176 LRPDLRFVHHKLKEMNAGLKANI  198 (423)
Q Consensus       176 ~RPt~~~I~~~L~~i~~~~~~~~  198 (423)
                      +||++.++++.|+.+........
T Consensus       290 ~Rps~~~ll~~L~~~~~~~~~~~  312 (317)
T 2buj_A          290 QRPHIPLLLSQLEALQPPAPGQH  312 (317)
T ss_dssp             GSCCHHHHHHHHHHTCCCCCC--
T ss_pred             hCCCHHHHHHHhhhcCCCCCCCC
Confidence            99999999999998876554443

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.93  E-value=1.7e-26  Score=223.61  Aligned_cols=146  Identities=22%  Similarity=0.286  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.+++ ||||||+|||++.++.+||+|||++.......   ......||+.|+|||++.+ .+ 
T Consensus       159 ~~~i~~qi~~aL~~LH~~~iv-H~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~-  232 (311)
T 3p1a_A          159 VWGYLRDTLLALAHLHSQGLV-HLDVKPANIFLGPRGRCKLGDFGLLVELGTAG---AGEVQEGDPRYMAPELLQG-SY-  232 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECGGGCEEECCCTTCEECC---------CCCCCGGGCCGGGGGT-CC-
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-cCCCCHHHEEECCCCCEEEccceeeeecccCC---CCcccCCCccccCHhHhcC-CC-
Confidence            678999999999999999987 99999999999999999999999987653222   2234568999999999876 33 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|..|+..     ......+..+.  .+......+++++.+++.+||+.||++|||+.+++
T Consensus       233 --~~~~DiwslG~il~el~~g~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell  303 (311)
T 3p1a_A          233 --GTAADVFSLGLTILEVACNMELPHG-----GEGWQQLRQGY--LPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALL  303 (311)
T ss_dssp             --STHHHHHHHHHHHHHHHHTCCCCSS-----HHHHHHHTTTC--CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred             --CchhhHHHHHHHHHHHHhCCCCCCC-----ccHHHHHhccC--CCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence              8999999999999999999766542     23334444332  11112235789999999999999999999999987


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       304 ~  304 (311)
T 3p1a_A          304 A  304 (311)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.93  E-value=1.9e-26  Score=225.38  Aligned_cols=169  Identities=28%  Similarity=0.428  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHH--------hCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc--ccccccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLH--------DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG--QERKLRRRKLYK   93 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH--------~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~--~~~~~~gt~~y~   93 (423)
                      ..+.++.|++.||.|||        +.+++ ||||||+||+++.++.+||+|||++..........  ......|++.|+
T Consensus       140 ~~~~i~~~i~~~l~~lH~~~~~~~~~~~iv-H~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~  218 (342)
T 1b6c_B          140 GMIKLALSTASGLAHLHMEIVGTQGKPAIA-HRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM  218 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHCCBCSTTCBCEEE-CSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCee-eCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccC
Confidence            36899999999999999        88887 99999999999999999999999987654332211  223457889999


Q ss_pred             CCccccCCCCC---CCCCccchHHHHHHHHHHHhC----------CCCCCCCC---CChHHHHHHHhcCCCCCCCCC---
Q psy1840          94 APELLRQPHLP---RGTQKGDVYSFGLVLYEVIGR----------QGPWGHLR---MTDEEIITSVTQGSGLRPDTS---  154 (423)
Q Consensus        94 APE~l~~~~~~---~~s~ksDVyS~Giil~elltg----------~~Pf~~~~---~~~~~i~~~i~~~~~~~p~~~---  154 (423)
                      |||.+.+....   ..+.++|||||||++|||++|          ..||....   .....+...+... ..++..+   
T Consensus       219 aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  297 (342)
T 1b6c_B          219 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ-KLRPNIPNRW  297 (342)
T ss_dssp             CHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS-CCCCCCCGGG
T ss_pred             CHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHH-HhCCCCcccc
Confidence            99999865311   113689999999999999999          77886532   2234444444332 2333322   


Q ss_pred             -CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhhc
Q psy1840         155 -SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       155 -~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~~~  194 (423)
                       ...++..+.+++.+||+.||++|||+.+|++.|+.+..+.
T Consensus       298 ~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          298 QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             GTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence             2345678999999999999999999999999999987654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.93  E-value=6.7e-27  Score=228.25  Aligned_cols=156  Identities=21%  Similarity=0.325  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc---cEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~---~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++   .+||+|||+++.......  ......+|+.|+|||.+.+
T Consensus       107 ~~~~i~~qi~~~l~~LH~~~iv-H~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~  183 (325)
T 3kn6_A          107 EASYIMRKLVSAVSHMHDVGVV-HRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--PLKTPCFTLHYAAPELLNQ  183 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEEEC----CEEEECCCTTCEECCC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCe-ecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--cccccCCCcCccCHHHhcC
Confidence            3679999999999999999988 999999999997665   899999999876433221  2234567899999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCC-----CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR-----MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~-----~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                      ..+   +.++|||||||++|+|++|..||....     ....++...+..+....+......+++++.+++.+||+.||.
T Consensus       184 ~~~---~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  260 (325)
T 3kn6_A          184 NGY---DESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPN  260 (325)
T ss_dssp             CCC---CHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTT
T ss_pred             CCC---CCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChh
Confidence            655   899999999999999999999997532     234566777776554333222235789999999999999999


Q ss_pred             CCCCHHHHHH
Q psy1840         176 LRPDLRFVHH  185 (423)
Q Consensus       176 ~RPt~~~I~~  185 (423)
                      +|||+.++++
T Consensus       261 ~Rpt~~ell~  270 (325)
T 3kn6_A          261 KRLKMSGLRY  270 (325)
T ss_dssp             TCCCTTTSTT
T ss_pred             HCCCHHHHhc
Confidence            9999998864

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.93  E-value=3.1e-26  Score=226.66  Aligned_cols=172  Identities=14%  Similarity=0.071  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-----------CccEEEeccCCcccccCCCcccccccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-----------RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK   93 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-----------~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~   93 (423)
                      .+.++.||+.||+|||+.|++ ||||||+|||++.           ++.+||+|||+++...............||+.|+
T Consensus       174 ~~~i~~qi~~~L~~lH~~~iv-HrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~  252 (365)
T 3e7e_A          174 VISFAMRMLYMIEQVHDCEII-HGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQ  252 (365)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCC
T ss_pred             HHHHHHHHHHHHHHHhhCCee-cCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCC
Confidence            689999999999999999988 9999999999998           8999999999997543332333335567999999


Q ss_pred             CCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcC
Q psy1840          94 APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEED  173 (423)
Q Consensus        94 APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~d  173 (423)
                      |||++.+..+   +.++|||||||++|||++|+.||.......       ..   ..........++.+.+++..|++.+
T Consensus       253 aPE~~~~~~~---~~~~DiwslG~il~elltg~~pf~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~l~~~  319 (365)
T 3e7e_A          253 CVEMLSNKPW---NYQIDYFGVAATVYCMLFGTYMKVKNEGGE-------CK---PEGLFRRLPHLDMWNEFFHVMLNIP  319 (365)
T ss_dssp             CHHHHTTCCB---STHHHHHHHHHHHHHHHHSSCCCEEEETTE-------EE---ECSCCTTCSSHHHHHHHHHHHHCCC
T ss_pred             ChHHhcCCCC---CccccHHHHHHHHHHHHhCCCccccCCCCc-------ee---echhccccCcHHHHHHHHHHHcCCC
Confidence            9999988765   899999999999999999999985321100       00   0011111234778999999999999


Q ss_pred             CCCC-CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHhh
Q psy1840         174 PELR-PDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYA  210 (423)
Q Consensus       174 P~~R-Pt~~~I~~~L~~i~~~~~~~~~d~~~~~~e~~~  210 (423)
                      |.+| |++.++.+.|+.+......+..+.+..++....
T Consensus       320 p~~r~~~~~~l~~~l~~~l~~~~~~~~~~l~~~l~~~~  357 (365)
T 3e7e_A          320 DCHHLPSLDLLRQKLKKVFQQHYTNKIRALRNRLIVLL  357 (365)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence            9999 678999999998887766666777777666554

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.93  E-value=5.3e-26  Score=219.00  Aligned_cols=154  Identities=21%  Similarity=0.246  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE---cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLI---DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl---d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.|++.||.|||+.|++ ||||||+||++   +.++.+||+|||++......    ......+++.|+|||.+.+
T Consensus       107 ~~~~~~~qi~~~l~~lH~~~i~-H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~  181 (304)
T 2jam_A          107 DASLVIQQVLSAVKYLHENGIV-HRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG----IMSTACGTPGYVAPEVLAQ  181 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB----TTHHHHSCCCBCCTTTBSS
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-ccCCCHHHEEEecCCCCCCEEEccCCcceecCCC----ccccccCCCCccChHHhcc
Confidence            3678999999999999999998 99999999999   78899999999998654321    1233468899999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+   +.++||||||+++|+|++|..||..  ....++...+..+....+......+++.+.+++.+||+.||++||++
T Consensus       182 ~~~---~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~  256 (304)
T 2jam_A          182 KPY---SKAVDCWSIGVITYILLCGYPPFYE--ETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTC  256 (304)
T ss_dssp             CSC---CHHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCH
T ss_pred             CCC---CchhhHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCH
Confidence            655   8999999999999999999999974  44566777777665444433345688999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         181 RFVHHKL  187 (423)
Q Consensus       181 ~~I~~~L  187 (423)
                      .++++.-
T Consensus       257 ~~~l~h~  263 (304)
T 2jam_A          257 EKALSHP  263 (304)
T ss_dssp             HHHHTSH
T ss_pred             HHHhcCc
Confidence            9998743

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.93  E-value=1.3e-26  Score=224.13  Aligned_cols=162  Identities=19%  Similarity=0.205  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc---EEEeccCCcccccCCCc-----ccccccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV---LQIADFGLHAFKAGQDE-----TGQERKLRRRKLYKAP   95 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~---vKL~DFGla~~~~~~~~-----~~~~~~~~gt~~y~AP   95 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.++.   +||+|||++........     ........|++.|+||
T Consensus       112 ~~~~i~~qi~~~l~~lH~~~iv-H~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  190 (316)
T 2ac3_A          112 EASVVVQDVASALDFLHNKGIA-HRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAP  190 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCH
T ss_pred             HHHHHHHHHHHHHHHHHhCCce-eCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccCh
Confidence            3678999999999999999998 9999999999988765   99999999875432211     1112234689999999


Q ss_pred             ccccCCC--CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC-------------hHHHHHHHhcCCCCCCCCCCCCchH
Q psy1840          96 ELLRQPH--LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-------------DEEIITSVTQGSGLRPDTSSLDCAP  160 (423)
Q Consensus        96 E~l~~~~--~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-------------~~~i~~~i~~~~~~~p~~~~~~~~~  160 (423)
                      |++.+..  ...++.++|||||||++|||++|..||......             ...+...+..+....|......+++
T Consensus       191 E~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  270 (316)
T 2ac3_A          191 EVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISC  270 (316)
T ss_dssp             HHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHHHHTTSCH
T ss_pred             HHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCchhcccCCH
Confidence            9987411  001378999999999999999999999754321             2345566665544333222235788


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .+.+++.+||+.||.+|||+.++++.
T Consensus       271 ~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          271 AAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            99999999999999999999999763

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.93  E-value=6.2e-26  Score=223.44  Aligned_cols=146  Identities=18%  Similarity=0.315  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+..+ 
T Consensus       112 ~~~~~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  187 (345)
T 3a8x_A          112 ARFYSAEISLALNYLHERGII-YRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDY-  187 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTSCEEECCGGGCBCSCCTT--CCBCCCCSCGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHCCce-ecCCCHHHEEECCCCCEEEEeccccccccCCC--CcccccCCCccccCccccCCCCC-
Confidence            578999999999999999998 99999999999999999999999987532221  12345679999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC-------CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR-------MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~-------~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                        +.++|||||||++|||++|..||....       .....+...+.......|    ..++.++.+++.+||+.||.+|
T Consensus       188 --~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~lL~~dP~~R  261 (345)
T 3a8x_A          188 --GFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP----RSLSVKAASVLKSFLNKDPKER  261 (345)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSSTTTS
T ss_pred             --ChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhcCCHhHC
Confidence              899999999999999999999996422       122344455555433322    3578999999999999999999


Q ss_pred             CCH
Q psy1840         178 PDL  180 (423)
Q Consensus       178 Pt~  180 (423)
                      |++
T Consensus       262 ~~~  264 (345)
T 3a8x_A          262 LGC  264 (345)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            985

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.93  E-value=4.3e-26  Score=235.09  Aligned_cols=153  Identities=25%  Similarity=0.388  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC---CccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS---RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~---~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.   ++.+||+|||++.......   ......||+.|+|||++.+
T Consensus       137 ~~~~i~~qi~~~l~~lH~~~iv-H~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~l~~  212 (494)
T 3lij_A          137 DAAVIIKQVLSGVTYLHKHNIV-HRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK---KMKERLGTAYYIAPEVLRK  212 (494)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTB---CBCCCCSCTTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCce-eccCChhhEEEeCCCCCCcEEEEECCCCeECCCCc---cccccCCCcCeeCHHHHcc
Confidence            3678999999999999999988 9999999999976   4569999999987654332   2234578999999999864


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .    ++.++||||+||++|+|++|..||..  .+..++...+..+....+......+++.+.+++.+||+.||.+|||+
T Consensus       213 ~----~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  286 (494)
T 3lij_A          213 K----YDEKCDVWSIGVILFILLAGYPPFGG--QTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISA  286 (494)
T ss_dssp             C----BCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             c----CCCchhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccH
Confidence            3    38999999999999999999999974  45677888888766544443345688999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       287 ~e~l~h  292 (494)
T 3lij_A          287 QQALEH  292 (494)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            999763

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.93  E-value=3.8e-27  Score=234.48  Aligned_cols=141  Identities=16%  Similarity=0.115  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC---
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP---  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~---  101 (423)
                      ++.++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++....     ......| +.|+|||++.+.   
T Consensus       208 ~~~i~~qi~~aL~~LH~~~iv-HrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~  280 (377)
T 3byv_A          208 RLQLTLQVIRLLASLHHYGLV-HTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATI  280 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccc
Confidence            567999999999999999988 999999999999999999999999875321     1234456 889999999876   


Q ss_pred             --------CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcC
Q psy1840         102 --------HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEED  173 (423)
Q Consensus       102 --------~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~d  173 (423)
                              .+   +.++|||||||++|||++|+.||.....  .+....+..        ....+++++.+++.+||+.|
T Consensus       281 ~~~~~~~~~~---~~~~DvwSlG~il~elltg~~Pf~~~~~--~~~~~~~~~--------~~~~~~~~~~~li~~~L~~d  347 (377)
T 3byv_A          281 SYHRDRRTLM---TFSFDAWALGLVIYWIWCADLPITKDAA--LGGSEWIFR--------SCKNIPQPVRALLEGFLRYP  347 (377)
T ss_dssp             HHHHCCEEEC---CHHHHHHHHHHHHHHHHHSSCCC--------CCSGGGGS--------SCCCCCHHHHHHHHHHTCSS
T ss_pred             cccccccccC---ChhhhHHHHHHHHHHHHHCCCCCccccc--ccchhhhhh--------hccCCCHHHHHHHHHHcCCC
Confidence                    44   8999999999999999999999964211  111111111        11357899999999999999


Q ss_pred             CCCCCCHHHHHH
Q psy1840         174 PELRPDLRFVHH  185 (423)
Q Consensus       174 P~~RPt~~~I~~  185 (423)
                      |++||++.++++
T Consensus       348 p~~Rpt~~e~l~  359 (377)
T 3byv_A          348 KEDRLLPLQAME  359 (377)
T ss_dssp             GGGCCCHHHHHT
T ss_pred             chhCCCHHHHhh
Confidence            999999999986

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.93  E-value=2.4e-25  Score=228.90  Aligned_cols=153  Identities=22%  Similarity=0.307  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc---CCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLID---SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld---~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++   .++.+||+|||++.......   ......||+.|+|||++.+
T Consensus       122 ~~~~i~~qi~~al~~lH~~~iv-H~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~  197 (486)
T 3mwu_A          122 DAARIIKQVFSGITYMHKHNIV-HRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT---KMKDRIGTAYYIAPEVLRG  197 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-------CCTTGGGGCCGGGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHCCeE-eccCchHHEEEecCCCCCCEEEEECCcCeECCCCC---ccCCCcCCCCCCCHHHhCC
Confidence            3679999999999999999998 999999999995   45679999999987654322   1234578999999999976


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .    ++.++||||+||++|+|++|..||.+  .+..+++..+..+....+......+++++.+++.+||+.||.+|||+
T Consensus       198 ~----~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~  271 (486)
T 3mwu_A          198 T----YDEKCDVWSAGVILYILLSGTPPFYG--KNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITA  271 (486)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             C----CCchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            3    38999999999999999999999974  45677788887765443333334678999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       272 ~~~l~h  277 (486)
T 3mwu_A          272 TQCLEH  277 (486)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999875

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.93  E-value=3.4e-26  Score=216.61  Aligned_cols=156  Identities=22%  Similarity=0.319  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++................+++.|+|||.+.+..+
T Consensus       106 ~~~~~~~~i~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  184 (276)
T 2yex_A          106 DAQRFFHQLMAGVVYLHGIGIT-HRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREF  184 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSB
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-ccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCC
Confidence            3689999999999999999988 999999999999999999999999876533322222345578899999999976542


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        .+.++||||||+++|||++|..||.......... ..+.......+  ....+++.+.+++.+||+.||++|||+.++
T Consensus       185 --~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  259 (276)
T 2yex_A          185 --HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY-SDWKEKKTYLN--PWKKIDSAPLALLHKILVENPSARITIPDI  259 (276)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHH-HHHHTTCTTST--TGGGSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             --CCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHH-HHhhhcccccC--chhhcCHHHHHHHHHHCCCCchhCCCHHHH
Confidence              2678999999999999999999997644333333 23332222211  123578899999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       260 l~  261 (276)
T 2yex_A          260 KK  261 (276)
T ss_dssp             TT
T ss_pred             hc
Confidence            75

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.93  E-value=2.8e-26  Score=217.88  Aligned_cols=155  Identities=18%  Similarity=0.260  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........   .....+++.|+|||.+.+..+
T Consensus       123 ~~~~i~~qi~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~  198 (284)
T 2a19_B          123 LALELFEQITKGVDYIHSKKLI-NRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDY  198 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEEETTEEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-eccCCHHHEEEcCCCCEEECcchhheecccccc---ccccCCcccccChhhhccCCC
Confidence            3679999999999999999988 999999999999999999999999876543321   234568899999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|||++|..|+..    .......+..+.      ....++..+.+++.+||+.||.+||++.++
T Consensus       199 ---~~~~Di~slG~il~~l~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~li~~~l~~dp~~Rps~~e~  265 (284)
T 2a19_B          199 ---GKEVDLYALGLILAELLHVCDTAFE----TSKFFTDLRDGI------ISDIFDKKEKTLLQKLLSKKPEDRPNTSEI  265 (284)
T ss_dssp             ---CTHHHHHHHHHHHHHHHSCCSSHHH----HHHHHHHHHTTC------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---cchhhhHHHHHHHHHHHhcCCcchh----HHHHHHHhhccc------ccccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence               8999999999999999999988742    233334443322      123578899999999999999999999999


Q ss_pred             HHHHHHHhhhcC
Q psy1840         184 HHKLKEMNAGLK  195 (423)
Q Consensus       184 ~~~L~~i~~~~~  195 (423)
                      ++.|..+..+..
T Consensus       266 l~~l~~~~~~~~  277 (284)
T 2a19_B          266 LRTLTVWKKSPE  277 (284)
T ss_dssp             HHHHHHHTC---
T ss_pred             HHHHHHHhhCCC
Confidence            999988876543

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.7e-26  Score=222.68  Aligned_cols=162  Identities=19%  Similarity=0.285  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE----cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI----DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl----d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.||+.||.|||+.|++ ||||||+||++    +.++.+||+|||+++.......   .....|++.|+|||++..
T Consensus       114 ~~~i~~qi~~~L~~LH~~~iv-H~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~  189 (319)
T 4euu_A          114 FLIVLRDVVGGMNHLRENGIV-HRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYER  189 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-cCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCc---eeecccCCCccCHHHhhh
Confidence            689999999999999999988 99999999999    8889999999999876543322   234568999999998862


Q ss_pred             C-----CCCCCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCC-------------------C--C
Q psy1840         101 P-----HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLR-------------------P--D  152 (423)
Q Consensus       101 ~-----~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~-------------------p--~  152 (423)
                      .     ....++.++|||||||++|||++|..||....  ....+++..+..+.+..                   +  .
T Consensus       190 ~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  269 (319)
T 4euu_A          190 AVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSC  269 (319)
T ss_dssp             HTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTC
T ss_pred             ccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCccc
Confidence            1     01134899999999999999999999996432  22245555554432210                   1  0


Q ss_pred             CCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q psy1840         153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM  190 (423)
Q Consensus       153 ~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i  190 (423)
                      .....++..+.+++.+||+.||++|||+.++++...+-
T Consensus       270 ~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          270 SLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             SSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             ccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence            11124567899999999999999999999999887654

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.93  E-value=4e-26  Score=224.47  Aligned_cols=157  Identities=20%  Similarity=0.219  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc--ccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE--TGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ........||+.|+|||++.+..
T Consensus       126 ~~~i~~qi~~~l~~LH~~~iv-H~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  204 (351)
T 3mi9_A          126 IKRVMQMLLNGLYYIHRNKIL-HRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGER  204 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHCCee-CCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCC
Confidence            679999999999999999988 999999999999999999999999876542221  12224456889999999987643


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCC-------------------------
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLD-------------------------  157 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~-------------------------  157 (423)
                        .++.++|||||||++|||++|..||..  ....+....+.......+......                         
T Consensus       205 --~~~~~~DiwslG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
T 3mi9_A          205 --DYGPPIDLWGAGCIMAEMWTRSPIMQG--NTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLK  280 (351)
T ss_dssp             --SCCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHH
T ss_pred             --CCCcHhHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhh
Confidence              238999999999999999999999974  334444444432111111110000                         


Q ss_pred             ---chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 ---CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ---~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                         .++.+.+|+.+||+.||.+|||+.++++.
T Consensus       281 ~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          281 AYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             HHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence               25679999999999999999999999875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.93  E-value=2.1e-26  Score=221.12  Aligned_cols=161  Identities=24%  Similarity=0.396  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       127 ~~~~~~~~i~~~l~~lH~~~i~-H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  205 (302)
T 4e5w_A          127 QQLKYAVQICKGMDYLGSRQYV-HRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSK  205 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHhhcCCcc-cCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCC
Confidence            3689999999999999999988 9999999999999999999999998765433221 2223456778899999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCC-------------CCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHh
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHL-------------RMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTC  169 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~-------------~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C  169 (423)
                      +   +.++||||||+++|+|++|..|+...             ......+...+..+...  . .+..+++.+.+++.+|
T Consensus       206 ~---~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~li~~~  279 (302)
T 4e5w_A          206 F---YIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRL--P-CPPNCPDEVYQLMRKC  279 (302)
T ss_dssp             E---EHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCC--C-CCTTCCHHHHHHHHHT
T ss_pred             C---CcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCC--C-CCCCCCHHHHHHHHHH
Confidence            5   78999999999999999998876321             11122333344333221  1 2236789999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHh
Q psy1840         170 WEEDPELRPDLRFVHHKLKEMN  191 (423)
Q Consensus       170 ~~~dP~~RPt~~~I~~~L~~i~  191 (423)
                      |+.||.+|||+.++++.|+.+.
T Consensus       280 l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          280 WEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998764

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.93  E-value=6.8e-26  Score=216.50  Aligned_cols=150  Identities=23%  Similarity=0.351  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE---cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI---DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl---d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.|++.||.|||+.|++ ||||||+||++   +.++.+||+|||++.......   ......+++.|+|||.+.+.
T Consensus       126 ~~~i~~qi~~~L~~LH~~~iv-H~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~  201 (285)
T 3is5_A          126 VAELMKQMMNALAYFHSQHVV-HKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDE---HSTNAAGTALYMAPEVFKRD  201 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCSGGGEEESSSSTTCCEEECCCCCCCC-------------CTTGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-ECCCCHHHEEEecCCCCCCEEEEeeecceecCCcc---cCcCcccccCcCChHHhccC
Confidence            679999999999999999998 99999999999   556889999999987653322   12345688999999998643


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                          .+.++||||||+++|||++|..||..  ....++...........+. ....+++.+.+++.+||+.||++|||+.
T Consensus       202 ----~~~~~Di~slG~il~~ll~g~~pf~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~Rps~~  274 (285)
T 3is5_A          202 ----VTFKCDIWSAGVVMYFLLTGCLPFTG--TSLEEVQQKATYKEPNYAV-ECRPLTPQAVDLLKQMLTKDPERRPSAA  274 (285)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHTCSCTTTSCCHH
T ss_pred             ----CCcccCeehHHHHHHHHHhCCCCCCC--CCHHHHHhhhccCCccccc-ccCcCCHHHHHHHHHHccCChhhCcCHH
Confidence                38999999999999999999999974  3445555555543332222 2234789999999999999999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      ++++
T Consensus       275 e~l~  278 (285)
T 3is5_A          275 QVLH  278 (285)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9875

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=6.2e-26  Score=223.03  Aligned_cols=155  Identities=21%  Similarity=0.235  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||+++.......  ......+|+.|+|||.+.+..  
T Consensus       114 ~~~~~~qi~~~l~~lH~~~iv-H~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~--  188 (346)
T 1ua2_A          114 IKAYMLMTLQGLEYLHQHWIL-HRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELLFGAR--  188 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHHTTCS--
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-CCCCCHHHEEEcCCCCEEEEecccceeccCCcc--cCCcccccccccCchHhhCCC--
Confidence            689999999999999999998 999999999999999999999999876543221  223457889999999987643  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CC---CCCC---------------CC----CCCchH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG---LRPD---------------TS----SLDCAP  160 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~---~~p~---------------~~----~~~~~~  160 (423)
                      .++.++|||||||++|||++|..||.+.  +..+.+..+...  .+   ..+.               .+    ...++.
T Consensus       189 ~~~~~~DiwslG~il~ell~g~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (346)
T 1ua2_A          189 MYGVGVDMWAVGCILAELLLRVPFLPGD--SDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGD  266 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCH
T ss_pred             CCCchhhhHhHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCH
Confidence            2388999999999999999999998743  334444443321  00   0000               00    134578


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++.+++.+||+.||++|||+.++++.
T Consensus       267 ~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          267 DLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             HHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHhccChhhCCCHHHHhcC
Confidence            99999999999999999999998764

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.93  E-value=2.4e-26  Score=235.23  Aligned_cols=153  Identities=22%  Similarity=0.251  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||+.|++ ||||||+|||++.++.+||+|||+++......   ......||+.|+|||++.+..+ 
T Consensus       166 ~~~~~~qil~aL~~lH~~~ii-HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~-  240 (464)
T 3ttj_A          166 MSYLLYQMLCGIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVILGMGY-  240 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTSCEEECCCCCC-----CC---CC----CCCTTCCHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCChHhEEEeCCCCEEEEEEEeeeecCCCc---ccCCCcccccccCHHHHcCCCC-
Confidence            568999999999999999998 99999999999999999999999987653221   2245678999999999988655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CC-----------------CCCCCCCC---------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG-----------------LRPDTSSL---------  156 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~-----------------~~p~~~~~---------  156 (423)
                        +.++|||||||++|||++|+.||.+.  +..+.+..+...  .+                 ..|.....         
T Consensus       241 --~~~~DiwSlG~il~ell~g~~pF~g~--~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (464)
T 3ttj_A          241 --KENVDIWSVGCIMGEMVRHKILFPGR--DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDS  316 (464)
T ss_dssp             --CTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGG
T ss_pred             --CHHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCccc
Confidence              89999999999999999999999753  222222222210  00                 00000000         


Q ss_pred             ----------CchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         157 ----------DCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       157 ----------~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                ..++++.+|+.+||+.||++|||+.++++.
T Consensus       317 ~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          317 LFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             GSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                      015679999999999999999999998764

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.93  E-value=5.6e-26  Score=219.73  Aligned_cols=160  Identities=17%  Similarity=0.240  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .....++.|++.||.|||+.|++ ||||||+||++++ +.+||+|||++................|++.|+|||.+.+..
T Consensus       127 ~~~~~i~~qi~~aL~~LH~~~iv-H~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  204 (313)
T 3cek_A          127 WERKSYWKNMLEAVHTIHQHGIV-HSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMS  204 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCce-ecCCCcccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcc
Confidence            34689999999999999999998 9999999999975 899999999987654333222223456899999999987521


Q ss_pred             --------CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840         103 --------LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus       103 --------~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                              ....+.++||||||+++|||++|..||...... ......+..... ... ....++.++.+++.+||+.||
T Consensus       205 ~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~l~~li~~~l~~dp  281 (313)
T 3cek_A          205 SSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-ISKLHAIIDPNH-EIE-FPDIPEKDLQDVLKCCLKRDP  281 (313)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH-HHHHHHHHCTTS-CCC-CCCCSCHHHHHHHHHHTCSST
T ss_pred             cccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHH-HHHHHHHHhccc-ccC-CcccchHHHHHHHHHHccCCc
Confidence                    113488999999999999999999999754322 222333332211 111 123467899999999999999


Q ss_pred             CCCCCHHHHHHHH
Q psy1840         175 ELRPDLRFVHHKL  187 (423)
Q Consensus       175 ~~RPt~~~I~~~L  187 (423)
                      .+||++.++++..
T Consensus       282 ~~Rps~~ell~h~  294 (313)
T 3cek_A          282 KQRISIPELLAHP  294 (313)
T ss_dssp             TTSCCHHHHHTSH
T ss_pred             ccCcCHHHHhcCc
Confidence            9999999998753

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.93  E-value=4.8e-26  Score=225.79  Aligned_cols=156  Identities=20%  Similarity=0.328  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-  102 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......||+.|+|||++.+.. 
T Consensus       201 ~~~~i~~qi~~~L~~LH~~gi~-H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~  276 (365)
T 2y7j_A          201 ETRSIMRSLLEAVSFLHANNIV-HRDLKPENILLDDNMQIRLSDFGFSCHLEPGE---KLRELCGTPGYLAPEILKCSMD  276 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCCTTCEECCTTC---CBCCCCSCGGGCCHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEECCCCCEEEEecCcccccCCCc---ccccCCCCCCccChhhcccccc
Confidence            3679999999999999999988 99999999999999999999999987654322   123467899999999986431 


Q ss_pred             --CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         103 --LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       103 --~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        ...++.++|||||||++|||++|..||..  .........+..+....+......++..+.+++.+||+.||++|||+
T Consensus       277 ~~~~~~~~~~Di~slG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~  354 (365)
T 2y7j_A          277 ETHPGYGKEVDLWACGVILFTLLAGSPPFWH--RRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTA  354 (365)
T ss_dssp             TTSCCBCTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             ccCcCCCchhhHHhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCH
Confidence              11348899999999999999999999974  34555666666554332221223578899999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .++++
T Consensus       355 ~ell~  359 (365)
T 2y7j_A          355 EQALQ  359 (365)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99876

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.93  E-value=5.5e-26  Score=220.91  Aligned_cols=161  Identities=22%  Similarity=0.336  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhC---CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDS---EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~---~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.|++.||.|||+.   |++ ||||||+||+++.++.+||+|||++........ .......||+.|+|||.+.+.
T Consensus       133 ~~~i~~~i~~~l~~lH~~~~~~iv-H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~  210 (326)
T 3uim_A          133 RQRIALGSARGLAYLHDHCDPKII-HRDVKAANILLDEEFEAVVGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTG  210 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSCEE-CCCCSGGGEEECTTCCEEECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCeE-eCCCchhhEEECCCCCEEeccCccccccCcccc-cccccccCCcCccCHHHhccC
Confidence            689999999999999999   988 999999999999999999999999876543322 222345689999999999776


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCC------CCChHHHHHHHhcCCCC----C---CCCCCCCchHHHHHHHHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHL------RMTDEEIITSVTQGSGL----R---PDTSSLDCAPSIIACMRT  168 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~------~~~~~~i~~~i~~~~~~----~---p~~~~~~~~~~l~~Li~~  168 (423)
                      .+   +.++||||||+++|||++|..||...      .....+...........    .   +.......+..+.+++.+
T Consensus       211 ~~---~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  287 (326)
T 3uim_A          211 KS---SEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALL  287 (326)
T ss_dssp             EE---CHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHH
T ss_pred             CC---CccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHH
Confidence            55   89999999999999999999999521      11111111111111100    0   001112345789999999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHH
Q psy1840         169 CWEEDPELRPDLRFVHHKLKEM  190 (423)
Q Consensus       169 C~~~dP~~RPt~~~I~~~L~~i  190 (423)
                      ||+.||.+|||+.+|++.|+..
T Consensus       288 cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          288 CTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HTCSCGGGSCCHHHHHHHHHTS
T ss_pred             HhCcCCccCCCHHHHHHHhcCc
Confidence            9999999999999999998753

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.93  E-value=2.6e-26  Score=223.02  Aligned_cols=163  Identities=25%  Similarity=0.404  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       135 ~~~~i~~~l~~~l~~LH~~~iv-H~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  213 (318)
T 3lxp_A          135 QLLLFAQQICEGMAYLHAQHYI-HRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYK  213 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-CCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCC
Confidence            3689999999999999999988 9999999999999999999999998865433221 1223445778899999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-------------ChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHh
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-------------TDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTC  169 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-------------~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C  169 (423)
                      +   +.++||||||+++|+|++|..||.....             ....+...+..+.  .+. ....+++++.+++.+|
T Consensus       214 ~---~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~li~~~  287 (318)
T 3lxp_A          214 F---YYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGE--RLP-RPDKCPAEVYHLMKNC  287 (318)
T ss_dssp             E---EHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--CCC-CCTTCCHHHHHHHHHH
T ss_pred             C---CcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhccc--CCC-CCccccHHHHHHHHHH
Confidence            5   7899999999999999999999863210             0012222333322  111 2346889999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHhhh
Q psy1840         170 WEEDPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       170 ~~~dP~~RPt~~~I~~~L~~i~~~  193 (423)
                      |+.||.+|||+.++++.|+.+...
T Consensus       288 l~~dP~~Rps~~ell~~L~~l~~~  311 (318)
T 3lxp_A          288 WETEASFRPTFENLIPILKTVHEK  311 (318)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cCCCcccCcCHHHHHHHHHHHHHh
Confidence            999999999999999999887654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.93  E-value=1.7e-26  Score=227.73  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-------------------------CccEEEeccCCcccccCCCc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-------------------------RWVLQIADFGLHAFKAGQDE   79 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-------------------------~~~vKL~DFGla~~~~~~~~   79 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.                         ++.+||+|||++......  
T Consensus       139 ~~~i~~qi~~aL~~LH~~~iv-HrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~--  215 (360)
T 3llt_A          139 IKLYCIEILKALNYLRKMSLT-HTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY--  215 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC--
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC--
Confidence            678999999999999999988 9999999999975                         789999999998764322  


Q ss_pred             ccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCC--------
Q psy1840          80 TGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP--------  151 (423)
Q Consensus        80 ~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p--------  151 (423)
                         .....||+.|+|||++.+..+   +.++|||||||++|||++|+.||...  ...+....+.......|        
T Consensus       216 ---~~~~~gt~~y~aPE~~~~~~~---~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~~p~~~~~~~~  287 (360)
T 3llt_A          216 ---HGSIINTRQYRAPEVILNLGW---DVSSDMWSFGCVLAELYTGSLLFRTH--EHMEHLAMMESIIQPIPKNMLYEAT  287 (360)
T ss_dssp             ---CCSCCSCGGGCCHHHHTTCCC---CTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHTCCCCHHHHHHHT
T ss_pred             ---CcCccCcccccCcHHHcCCCC---CCccchHHHHHHHHHHHHCCCCCCCC--cHHHHHHHHHHhcCCCCHHHHhhhh
Confidence               134578899999999987665   89999999999999999999999742  33344433332111111        


Q ss_pred             ------------------CCC----------------CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         152 ------------------DTS----------------SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       152 ------------------~~~----------------~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                                        ...                ....++.+.+++.+||+.||.+|||+.++++
T Consensus       288 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~  355 (360)
T 3llt_A          288 KTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLK  355 (360)
T ss_dssp             TSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             hccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                              000                0012367889999999999999999999875

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.93  E-value=5.2e-26  Score=233.62  Aligned_cols=153  Identities=22%  Similarity=0.316  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE---cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLI---DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl---d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||++|++ ||||||+||++   +.++.+||+|||++.......   ......||+.|+|||++.+
T Consensus       127 ~~~~i~~qi~~~l~~lH~~~iv-H~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~  202 (484)
T 3nyv_A          127 DAARIIRQVLSGITYMHKNKIV-HRDLKPENLLLESKSKDANIRIIDFGLSTHFEASK---KMKDKIGTAYYIAPEVLHG  202 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCC---SHHHHTTGGGTCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-eCCCCHHHEEEecCCCCCcEEEEeeeeeEEccccc---ccccCCCCccccCceeecC
Confidence            3678999999999999999998 99999999999   567899999999987654332   1234568999999999976


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      .    ++.++||||+||++|+|++|..||..  .+..++...+..+....+......+++++.+++.+||+.||.+|||+
T Consensus       203 ~----~~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~  276 (484)
T 3nyv_A          203 T----YDEKCDVWSTGVILYILLSGCPPFNG--ANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISA  276 (484)
T ss_dssp             C----CCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             C----CCCcceeHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCH
Confidence            3    38999999999999999999999974  45677788887765443333334678999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         181 RFVHHK  186 (423)
Q Consensus       181 ~~I~~~  186 (423)
                      .++++.
T Consensus       277 ~e~l~h  282 (484)
T 3nyv_A          277 RDALDH  282 (484)
T ss_dssp             HHHHTS
T ss_pred             HHHhhC
Confidence            999874

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=8e-26  Score=223.28  Aligned_cols=156  Identities=20%  Similarity=0.284  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++...... ........||+.|+|||++.+...
T Consensus       160 ~~~~~~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~  237 (355)
T 1vzo_A          160 EVQIYVGEIVLALEHLHKLGII-YRDIKLENILLDSNGHVVLTDFGLSKEFVADE-TERAYDFCGTIEYMAPDIVRGGDS  237 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTSCEEESCSSEEEECCGGG-GGGGCGGGSCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEECCCCcEEEeeCCCCeecccCC-CCcccCcccCcCccChhhhcCCCC
Confidence            3578899999999999999998 99999999999999999999999987543221 122234578999999999986432


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCC--CCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC---
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHL--RMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP---  178 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~--~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP---  178 (423)
                       ..+.++|||||||++|||++|..||...  ......+...+.......|    ..++..+.+++.+||+.||.+||   
T Consensus       238 -~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~R~~~~  312 (355)
T 1vzo_A          238 -GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP----QEMSALAKDLIQRLLMKDPKKRLGCG  312 (355)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSSGGGSTTSS
T ss_pred             -CCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCC----cccCHHHHHHHHHHhhhCHHHhcCCC
Confidence             3478999999999999999999999643  2334555555554432222    35788999999999999999999   


Q ss_pred             --CHHHHHHH
Q psy1840         179 --DLRFVHHK  186 (423)
Q Consensus       179 --t~~~I~~~  186 (423)
                        ++.++++.
T Consensus       313 ~~s~~ell~h  322 (355)
T 1vzo_A          313 PRDADEIKEH  322 (355)
T ss_dssp             TTTHHHHHTS
T ss_pred             CCCHHHHHcC
Confidence              88888764

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.93  E-value=1e-25  Score=218.74  Aligned_cols=155  Identities=18%  Similarity=0.311  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC--
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH--  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~--  102 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......  .......+++.|+|||.+....  
T Consensus       131 ~~~i~~qi~~~l~~lH~~~iv-H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~  207 (326)
T 2x7f_A          131 IAYICREILRGLSHLHQHKVI-HRDIKGQNVLLTENAEVKLVDFGVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENP  207 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCSGGGEEECTTCCEEECCCTTTC---------------CCGGGCCHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCcHHHEEEcCCCCEEEeeCcCceecCcCc--cccccccCCccccChhhhcccccc
Confidence            578999999999999999998 99999999999999999999999987543221  1123456889999999987321  


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      ...++.++|||||||++|+|++|..||..  .........+.....  +......++..+.+++.+||+.||.+||++.+
T Consensus       208 ~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~  283 (326)
T 2x7f_A          208 DATYDFKSDLWSLGITAIEMAEGAPPLCD--MHPMRALFLIPRNPA--PRLKSKKWSKKFQSFIESCLVKNHSQRPATEQ  283 (326)
T ss_dssp             ---CCTTHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCC--CCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             CcCCCccchHHHHHHHHHHHHhCCCCCCC--CcHHHHHHHhhcCcc--ccCCccccCHHHHHHHHHHhccChhhCCCHHH
Confidence            11348899999999999999999999964  334444444444322  22233467899999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       284 ll~h  287 (326)
T 2x7f_A          284 LMKH  287 (326)
T ss_dssp             HHTS
T ss_pred             HhhC
Confidence            9874

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.93  E-value=3.6e-26  Score=231.62  Aligned_cols=151  Identities=19%  Similarity=0.295  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc--EEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV--LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~--vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.  +||+|||++......     .....+|+.|+|||++.+..
T Consensus       202 ~~~i~~qi~~aL~~LH~~~iv-HrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~  275 (429)
T 3kvw_A          202 VRKFAHSILQCLDALHKNRII-HCDLKPENILLKQQGRSGIKVIDFGSSCYEHQR-----VYTYIQSRFYRAPEVILGAR  275 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHTEE-CSCCSGGGEEESSTTSCCEEECCCTTCEETTCC-----CCSSCSCGGGCCHHHHHTBC
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cCCCCHHHeEEccCCCcceEEeecccceecCCc-----ccccCCCCCccChHHHhCCC
Confidence            678999999999999999988 9999999999999887  999999998654322     23457889999999998876


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC--------------------C------------
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL--------------------R------------  150 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~--------------------~------------  150 (423)
                      +   +.++|||||||++|||++|..||...  +..+.+..+......                    .            
T Consensus       276 ~---~~~~DiwSlG~il~elltG~~pf~~~--~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (429)
T 3kvw_A          276 Y---GMPIDMWSLGCILAELLTGYPLLPGE--DEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDG  350 (429)
T ss_dssp             C---CTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC-
T ss_pred             C---CchHHHHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccc
Confidence            5   89999999999999999999999753  333333322210000                    0            


Q ss_pred             ----------------CCC-------CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         151 ----------------PDT-------SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       151 ----------------p~~-------~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                      +..       .....++.+.+|+.+||+.||++|||+.++++.
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~H  409 (429)
T 3kvw_A          351 SVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRH  409 (429)
T ss_dssp             -CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCC
Confidence                            000       011236789999999999999999999999863

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.93  E-value=1.1e-25  Score=240.49  Aligned_cols=144  Identities=22%  Similarity=0.368  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||+.|++ ||||||+||||+.++.+||+|||+++......  .......||+.|+|||++.+..+ 
T Consensus       444 ~~~~~~qi~~aL~~LH~~gIi-HrDLKp~NILl~~~g~ikL~DFGla~~~~~~~--~~~~~~~GT~~Y~APE~l~~~~~-  519 (674)
T 3pfq_A          444 AVFYAAEIAIGLFFLQSKGII-YRDLKLDNVMLDSEGHIKIADFGMCKENIWDG--VTTKTFCGTPDYIAPEIIAYQPY-  519 (674)
T ss_dssp             HHHHHHHHHHHHHHHHHTSEE-CCCCCSTTEEECSSSCEEECCCTTCEECCCTT--CCBCCCCSCSSSCCHHHHTCCCB-
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-eccCChhhEEEcCCCcEEEeecceeeccccCC--cccccccCCCcccCHhhhcCCCC-
Confidence            578999999999999999988 99999999999999999999999987533222  22345689999999999987765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|||||||++|||++|+.||.+  .+..++...+.......|    ..+++++.+|+++||+.||.+||++
T Consensus       520 --~~~~DvwSlGvilyelltG~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          520 --GKSVDWWAFGVLLYEMLAGQAPFEG--EDEDELFQSIMEHNVAYP----KSMSKEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             --STHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHSSCCCCC----TTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred             --CccceEechHHHHHHHHcCCCCCCC--CCHHHHHHHHHhCCCCCC----ccCCHHHHHHHHHHccCCHHHCCCC
Confidence              8999999999999999999999974  456778888887654444    2578999999999999999999987

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.9e-26  Score=224.67  Aligned_cols=163  Identities=22%  Similarity=0.353  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       146 ~~~~i~~qi~~aL~~LH~~~iv-H~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  224 (326)
T 2w1i_A          146 KLLQYTSQICKGMEYLGTKRYI-HRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESK  224 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHhCCEe-ccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCC
Confidence            3678999999999999999988 9999999999999999999999998765433221 1122345677799999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCC----------CC----hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR----------MT----DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRT  168 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~----------~~----~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~  168 (423)
                      +   +.++||||||+++|||++|..||....          ..    ...+...+..+..  +. ....+++++.+++.+
T Consensus       225 ~---~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~li~~  298 (326)
T 2w1i_A          225 F---SVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGR--LP-RPDGCPDEIYMIMTE  298 (326)
T ss_dssp             E---EHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCC--CC-CCTTCCHHHHHHHHH
T ss_pred             C---CchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCC--CC-CCCcccHHHHHHHHH
Confidence            5   889999999999999999998875210          00    0122233333221  11 124688999999999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHhhh
Q psy1840         169 CWEEDPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       169 C~~~dP~~RPt~~~I~~~L~~i~~~  193 (423)
                      ||+.||++|||+.+|++.|+.+...
T Consensus       299 cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          299 CWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             HSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HcCCChhhCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999888654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.93  E-value=1.1e-25  Score=231.02  Aligned_cols=151  Identities=22%  Similarity=0.345  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......||+.|+|||++.+..+
T Consensus       117 ~~~~i~~qi~~aL~~LH~~giv-HrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~  192 (476)
T 2y94_A          117 ESRRLFQQILSGVDYCHRHMVV-HRDLKPENVLLDAHMNAKIADFGLSNMMSDGE---FLRTSCGSPNYAAPEVISGRLY  192 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEE-CSCCSGGGEEECTTCCEEECCCSSCEECCTTC---CBCCCCSCSTTCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHHCCCC-cccccHHHEEEecCCCeEEEeccchhhccccc---cccccCCCcCeEChhhccCCCC
Confidence            3679999999999999999988 99999999999999999999999987654322   2234578999999999987642


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        .+.++|||||||++|||++|..||.+.  ...++...+..+....|    ..+++++.+++.+||+.||.+|||+.+|
T Consensus       193 --~~~~~DiwSlGvil~elltG~~Pf~~~--~~~~~~~~i~~~~~~~p----~~~s~~~~~Li~~~L~~dP~~Rpt~~ei  264 (476)
T 2y94_A          193 --AGPEVDIWSSGVILYALLCGTLPFDDD--HVPTLFKKICDGIFYTP----QYLNPSVISLLKHMLQVDPMKRATIKDI  264 (476)
T ss_dssp             --CSHHHHHHHHHHHHHHHHHSSCSSCCS--SSHHHHHHHHTTCCCCC----TTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             --CCCcceehhhHHHHHHHhhCCCCCCCC--CHHHHHHHHhcCCcCCC----ccCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence              268999999999999999999999743  34667777776644333    2478899999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       265 l~h  267 (476)
T 2y94_A          265 REH  267 (476)
T ss_dssp             HTC
T ss_pred             HhC
Confidence            874

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.93  E-value=1.1e-25  Score=223.06  Aligned_cols=157  Identities=21%  Similarity=0.268  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc--EEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV--LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~--vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.++.  +||+|||+++.....   .......||+.|+|||++.+.
T Consensus       117 ~~~~i~~ql~~~L~~LH~~~iv-H~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~  192 (361)
T 3uc3_A          117 EARFFFQQLLSGVSYCHSMQIC-HRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH---SQPKSTVGTPAYIAPEVLLRQ  192 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-SCCCCGGGEEECSSSSCCEEECCCCCC------------------CTTSCHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEEcCCCCceEEEeecCcccccccc---CCCCCCcCCCCcCChhhhcCC
Confidence            3679999999999999999998 9999999999987765  999999998743221   122345689999999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      .+  .+.++|||||||++|+|++|+.||....  ......+..+.......|.  ...+++++.+++.+||+.||.+|||
T Consensus       193 ~~--~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~li~~~L~~dP~~Rps  268 (361)
T 3uc3_A          193 EY--DGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPD--DIRISPECCHLISRIFVADPATRIS  268 (361)
T ss_dssp             SC--CHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCT--TSCCCHHHHHHHHHHSCSCTTTSCC
T ss_pred             CC--CCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCC--cCCCCHHHHHHHHHHccCChhHCcC
Confidence            53  2345899999999999999999997532  2334555555554433332  2357899999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1840         180 LRFVHHKLK  188 (423)
Q Consensus       180 ~~~I~~~L~  188 (423)
                      +.++++.-.
T Consensus       269 ~~ell~hp~  277 (361)
T 3uc3_A          269 IPEIKTHSW  277 (361)
T ss_dssp             HHHHHTSHH
T ss_pred             HHHHHhCcc
Confidence            999987543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.93  E-value=4.7e-26  Score=221.84  Aligned_cols=155  Identities=18%  Similarity=0.186  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......  .......+++.|+|||.+.+..  
T Consensus       102 ~~~~~~qi~~aL~~LH~~~iv-H~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~--  176 (324)
T 3mtl_A          102 VKLFLFQLLRGLAYCHRQKVL-HRDLKPQNLLINERGELKLADFGLARAKSIPT--KTYDNEVVTLWYRPPDILLGST--  176 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-ESSCCGGGEEECTTCCEEECSSSEEECC--------------CGGGCCHHHHTTCC--
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-CCCcCHHHEEECCCCCEEEccCcccccccCCc--cccccccCcccccChhhhcCCC--
Confidence            578999999999999999988 99999999999999999999999987543222  1223446789999999987633  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCC-----CC--------------C-------CCCCc
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR-----PD--------------T-------SSLDC  158 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~-----p~--------------~-------~~~~~  158 (423)
                      .++.++|||||||++|+|++|..||.+.  +..+....+.......     +.              .       ....+
T Consensus       177 ~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (324)
T 3mtl_A          177 DYSTQIDMWGVGCIFYEMATGRPLFPGS--TVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRL  254 (324)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTS
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCC
Confidence            2489999999999999999999999743  3444444433210000     00              0       01246


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++++.+++.+||+.||.+|||+.++++.
T Consensus       255 ~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          255 DSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            7889999999999999999999999763

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.93  E-value=3e-26  Score=230.85  Aligned_cols=156  Identities=17%  Similarity=0.185  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC-
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL-  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-  103 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++...... ........||+.|+|||++.+... 
T Consensus       170 ~~~~~~qi~~aL~~LH~~giv-HrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~  247 (410)
T 3v8s_A          170 ARFYTAEVVLALDAIHSMGFI-HRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG-MVRCDTAVGTPDYISPEVLKSQGGD  247 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECCTTS-EEECCSCCSCGGGCCHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHCCeE-eccCCHHHeeECCCCCEEEeccceeEeeccCC-cccccCCcCCccccCHHHhhccCCC
Confidence            568899999999999999988 99999999999999999999999987654322 112345689999999999986541 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchHHHHHHHHHhhhcCCCC--CCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS--GLRPDTSSLDCAPSIIACMRTCWEEDPEL--RPD  179 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~--~~~p~~~~~~~~~~l~~Li~~C~~~dP~~--RPt  179 (423)
                      ..++.++|||||||++|||++|+.||..  .+..+....+..+.  ...|.  ...+++++.+|+.+||..+|.+  ||+
T Consensus       248 ~~~~~~~DiwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~~~p~--~~~~s~~~~~li~~lL~~~~~rlgR~~  323 (410)
T 3v8s_A          248 GYYGRECDWWSVGVFLYEMLVGDTPFYA--DSLVGTYSKIMNHKNSLTFPD--DNDISKEAKNLICAFLTDREVRLGRNG  323 (410)
T ss_dssp             CEEETHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHCCCCT--TCCCCHHHHHHHHHHSSCGGGCTTSSC
T ss_pred             cCCCCcceEecchHHHHHHHhCCCCCCC--CChhhHHHHHHhccccccCCC--cccccHHHHHHHHHHccChhhhCCCCC
Confidence            1137899999999999999999999974  44566666665432  12222  2357899999999999988888  999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.+|+++
T Consensus       324 ~~ei~~H  330 (410)
T 3v8s_A          324 VEEIKRH  330 (410)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhcC
Confidence            9998764

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.93  E-value=1.9e-26  Score=224.55  Aligned_cols=164  Identities=23%  Similarity=0.368  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+.++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......++..|+|||.+.+..
T Consensus       128 ~~~~i~~qi~~al~~lH~~~iv-H~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  206 (327)
T 3lxl_A          128 RLLLYSSQICKGMEYLGSRRCV-HRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNI  206 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-CCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCC
Confidence            3689999999999999999988 9999999999999999999999998865433221 1223446778899999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCC-------------CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHh
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLR-------------MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTC  169 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~-------------~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C  169 (423)
                      +   +.++||||||+++|+|++|..||....             .....+...+..+..  +. ....+++.+.+++.+|
T Consensus       207 ~---~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~li~~~  280 (327)
T 3lxl_A          207 F---SRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQR--LP-APPACPAEVHELMKLC  280 (327)
T ss_dssp             E---EHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCC--CC-CCTTCCHHHHHHHHHH
T ss_pred             C---ChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccC--CC-CCCcccHHHHHHHHHH
Confidence            5   889999999999999999999985311             011223333333321  11 2346889999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHhhhc
Q psy1840         170 WEEDPELRPDLRFVHHKLKEMNAGL  194 (423)
Q Consensus       170 ~~~dP~~RPt~~~I~~~L~~i~~~~  194 (423)
                      |+.||++|||+.++++.|+.+..+.
T Consensus       281 l~~dP~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          281 WAPSPQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHC----
T ss_pred             cCCChhhCcCHHHHHHHHHHHHhhh
Confidence            9999999999999999998886644

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.93  E-value=6.4e-26  Score=222.14  Aligned_cols=150  Identities=21%  Similarity=0.275  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE-------------------cCCccEEEeccCCcccccCCCccccccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI-------------------DSRWVLQIADFGLHAFKAGQDETGQERK   85 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl-------------------d~~~~vKL~DFGla~~~~~~~~~~~~~~   85 (423)
                      ...++.||+.||.|||++|++ ||||||+||++                   +.++.+||+|||++......     ...
T Consensus       125 ~~~i~~qi~~~L~~lH~~~iv-H~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~  198 (355)
T 2eu9_A          125 VRHMAYQLCHALRFLHENQLT-HTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEH-----HTT  198 (355)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSC-----CCS
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccccc-----ccC
Confidence            679999999999999999988 99999999999                   67889999999998754322     134


Q ss_pred             ccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCC--------------
Q psy1840          86 LRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP--------------  151 (423)
Q Consensus        86 ~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p--------------  151 (423)
                      ..||+.|+|||++.+..+   +.++|||||||++|||++|..||...  ...+....+.......|              
T Consensus       199 ~~gt~~y~aPE~~~~~~~---~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  273 (355)
T 2eu9_A          199 IVATRHYRPPEVILELGW---AQPCDVWSIGCILFEYYRGFTLFQTH--ENREHLVMMEKILGPIPSHMIHRTRKQKYFY  273 (355)
T ss_dssp             SCSCGGGCCHHHHTTCCC---CTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHHHCSCGGGEE
T ss_pred             CcCCCcccCCeeeecCCC---CCccchHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHcCCCcHHHhhhccchhhhc
Confidence            578899999999987655   89999999999999999999999743  23333322221100000              


Q ss_pred             --------------------------CCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         152 --------------------------DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       152 --------------------------~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                                                .......+.++.+++.+||+.||++|||+.++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  333 (355)
T 2eu9_A          274 KGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL  333 (355)
T ss_dssp             TTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             ccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                                      0011223568999999999999999999999875

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.93  E-value=1.6e-25  Score=213.38  Aligned_cols=149  Identities=19%  Similarity=0.239  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++.......    .....+++.|+|||.+.+..+
T Consensus       115 ~~~~~~~qi~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~  189 (284)
T 2vgo_A          115 RSATFMEELADALHYCHERKVI-HRDIKPENLLMGYKGELKIADFGWSVHAPSLR----RRTMCGTLDYLPPEMIEGKTH  189 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEE-CCCCSGGGEEECTTCCEEECCCTTCEECSSSC----BCCCCSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHHCCce-ecCCCHHHEEEcCCCCEEEecccccccCcccc----cccccCCCCcCCHHHhccCCC
Confidence            3679999999999999999988 99999999999999999999999986543221    234568899999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|+|++|..||..  ....+....+.......|    ..++..+.+++.+||+.||.+||++.++
T Consensus       190 ---~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~Rps~~~l  260 (284)
T 2vgo_A          190 ---DEKVDLWCAGVLCYEFLVGMPPFDS--PSHTETHRRIVNVDLKFP----PFLSDGSKDLISKLLRYHPPQRLPLKGV  260 (284)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCCCCC----TTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             ---CcccchhhHHHHHHHHHHCCCCCCC--CCHhHHHHHHhccccCCC----CcCCHHHHHHHHHHhhcCHhhCCCHHHH
Confidence               8899999999999999999999974  344555556655433222    3578899999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       261 l~h  263 (284)
T 2vgo_A          261 MEH  263 (284)
T ss_dssp             HTC
T ss_pred             hhC
Confidence            763

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.93  E-value=2.9e-26  Score=218.74  Aligned_cols=155  Identities=20%  Similarity=0.326  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc--------EEEeccCCcccccCCCcccccccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV--------LQIADFGLHAFKAGQDETGQERKLRRRKLYKAP   95 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~--------vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~AP   95 (423)
                      ..+.++.||+.||.|||++|++ ||||||+||+++.++.        +||+|||++......      ....++..|+||
T Consensus       114 ~~~~i~~qi~~~L~~LH~~~iv-H~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aP  186 (289)
T 4fvq_A          114 WKLEVAKQLAAAMHFLEENTLI-HGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPK------DILQERIPWVPP  186 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCH------HHHHHTTTTSCH
T ss_pred             HHHHHHHHHHHHHHHHhhCCeE-CCCcCcceEEEecCCcccccccceeeeccCcccccccCc------cccCCcCcccCH
Confidence            3679999999999999999998 9999999999998887        999999998654221      233567789999


Q ss_pred             ccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCC
Q psy1840          96 ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPE  175 (423)
Q Consensus        96 E~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~  175 (423)
                      |.+.+..  .++.++||||||+++|||++|..|+.. ................. +    ...++++.+++.+||+.||+
T Consensus       187 E~~~~~~--~~~~~~DiwslG~il~el~~g~~~~~~-~~~~~~~~~~~~~~~~~-~----~~~~~~l~~li~~~l~~dp~  258 (289)
T 4fvq_A          187 ECIENPK--NLNLATDKWSFGTTLWEICSGGDKPLS-ALDSQRKLQFYEDRHQL-P----APKAAELANLINNCMDYEPD  258 (289)
T ss_dssp             HHHHCGG--GCCHHHHHHHHHHHHHHHHTTTCCTTT-TSCHHHHHHHHHTTCCC-C----CCSSCTTHHHHHHHSCSSGG
T ss_pred             HHhCCCC--CCCchhHHHHHHHHHHHHHcCCCCCcc-ccchHHHHHHhhccCCC-C----CCCCHHHHHHHHHHcCCChh
Confidence            9998622  238999999999999999996554432 22333333333332211 1    23467899999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhh
Q psy1840         176 LRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       176 ~RPt~~~I~~~L~~i~~~  193 (423)
                      +|||+.++++.|+.+...
T Consensus       259 ~Rps~~~ll~~l~~l~~p  276 (289)
T 4fvq_A          259 HRPSFRAIIRDLNSLFTP  276 (289)
T ss_dssp             GSCCHHHHHHHHHTCC--
T ss_pred             HCcCHHHHHHHHHHhcCC
Confidence            999999999999887653

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.93  E-value=5.4e-26  Score=216.20  Aligned_cols=153  Identities=18%  Similarity=0.243  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc----cEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW----VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~----~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++    .+||+|||++........   .....+++.|+|||.+.
T Consensus       109 ~~~~~~~~i~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~  184 (283)
T 3bhy_A          109 EATQFLKQILDGVHYLHSKRIA-HFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE---FKNIFGTPEFVAPEIVN  184 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-----------CCCGGGCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-CCCCChHHEEEecCCCCCCceEEEecccceeccCCCc---ccccCCCcCccCcceec
Confidence            3689999999999999999998 999999999998877    899999999876533221   23446888999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +..+   +.++||||||+++|+|++|..||..  ....+....+.......+......+++.+.+++.+||+.||++||+
T Consensus       185 ~~~~---~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  259 (283)
T 3bhy_A          185 YEPL---GLEADMWSIGVITYILLSGASPFLG--ETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMT  259 (283)
T ss_dssp             TCCC---CTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCC
T ss_pred             CCCC---CcchhhhhHHHHHHHHHHCCCCCCC--cchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcC
Confidence            7654   8999999999999999999999974  3455666666554333222222357889999999999999999999


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       260 ~~~~l~  265 (283)
T 3bhy_A          260 IAQSLE  265 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999987

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.93  E-value=3e-26  Score=223.01  Aligned_cols=157  Identities=22%  Similarity=0.368  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-  102 (423)
                      ...++.|++.||.|||+. |++ ||||||+||+++.++.+||+|||++.......   ......|++.|+|||.+.... 
T Consensus       127 ~~~i~~~i~~~l~~lH~~~~iv-H~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~  202 (327)
T 3aln_A          127 LGKITLATVKALNHLKENLKII-HRDIKPSNILLDRSGNIKLCDFGISGQLVDSI---AKTRDAGCRPYMAPERIDPSAS  202 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCC-CSCCCGGGEEEETTTEEEECCCSSSCC------------------------------
T ss_pred             HHHHHHHHHHHHHHHhccCCEe-ECCCCHHHEEEcCCCCEEEccCCCceeccccc---ccccCCCCccccCceeeccccC
Confidence            679999999999999998 998 99999999999999999999999987653322   112346888999999984321 


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-CCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      ...++.++||||||+++|+|++|+.||...... .+....+..+.. ..+......+++.+.+++.+||+.||++||++.
T Consensus       203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  281 (327)
T 3aln_A          203 RQGYDVRSDVWSLGITLYELATGRFPYPKWNSV-FDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYK  281 (327)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHSCCCSSCC--------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             cCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH-HHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHH
Confidence            112489999999999999999999999753211 111112222211 111112246889999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      +|++.
T Consensus       282 ell~h  286 (327)
T 3aln_A          282 ELLKH  286 (327)
T ss_dssp             HHTTS
T ss_pred             HHHhC
Confidence            99774

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.93  E-value=3.5e-26  Score=217.06  Aligned_cols=154  Identities=17%  Similarity=0.321  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCC-----CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccc
Q psy1840          24 GSISVNTTASVGMIHLHDSE-----IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~-----ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l   98 (423)
                      ..+.++.|++.||.|||+.+     ++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+
T Consensus       112 ~~~~i~~~i~~~l~~lH~~~~~~~~iv-H~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~  188 (279)
T 2w5a_A          112 FVLRVMTQLTLALKECHRRSDGGHTVL-HRDLKPANVFLDGKQNVKLGDFGLARILNHDTS--FAKTFVGTPYYMSPEQM  188 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------C-CCCCSGGGEEECSSSCEEECCCCHHHHC---CH--HHHHHHSCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCeeE-EeccchhhEEEcCCCCEEEecCchheeeccccc--cccccCCCccccChHHh
Confidence            36899999999999999998     87 999999999999999999999999876532211  11234678899999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      .+..+   +.++||||||+++|+|++|..||..  ....++...+..+...  . ....++.++.+++.+||+.||++||
T Consensus       189 ~~~~~---~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~i~~~~~~--~-~~~~~~~~l~~li~~~l~~~p~~Rp  260 (279)
T 2w5a_A          189 NRMSY---NEKSDIWSLGCLLYELCALMPPFTA--FSQKELAGKIREGKFR--R-IPYRYSDELNEIITRMLNLKDYHRP  260 (279)
T ss_dssp             HCC-C---CHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCC--C-CCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             ccCCC---CchhhHHHHHHHHHHHHHCCCCCcc--cCHHHHHHHHhhcccc--c-CCcccCHHHHHHHHHHcCCCcccCC
Confidence            87654   8999999999999999999999974  3456677777665432  1 1236789999999999999999999


Q ss_pred             CHHHHHHHHH
Q psy1840         179 DLRFVHHKLK  188 (423)
Q Consensus       179 t~~~I~~~L~  188 (423)
                      ++.+|++.+.
T Consensus       261 s~~~ll~~~~  270 (279)
T 2w5a_A          261 SVEEILENPL  270 (279)
T ss_dssp             CHHHHHTSTT
T ss_pred             CHHHHHhChh
Confidence            9999987543

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.93  E-value=1.7e-26  Score=224.09  Aligned_cols=150  Identities=22%  Similarity=0.313  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc----------cccccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET----------GQERKLRRRKLYKA   94 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~----------~~~~~~~gt~~y~A   94 (423)
                      .+.++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++........          .......||+.|+|
T Consensus       166 ~~~i~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  244 (332)
T 3qd2_B          166 CLHIFIQIAEAVEFLHSKGLM-HRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMS  244 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSC
T ss_pred             HHHHHHHHHHHHHHHHhCCee-ecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccC
Confidence            578999999999999999988 9999999999999999999999998765433211          11234568999999


Q ss_pred             CccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840          95 PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus        95 PE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      ||.+.+..+   +.++|||||||++|||++|..|+.    ........+....  .|. .....++.+.+++.+||+.||
T Consensus       245 PE~~~~~~~---~~~~Di~slG~il~el~~~~~~~~----~~~~~~~~~~~~~--~~~-~~~~~~~~~~~li~~~l~~~p  314 (332)
T 3qd2_B          245 PEQIHGNNY---SHKVDIFSLGLILFELLYSFSTQM----ERVRIITDVRNLK--FPL-LFTQKYPQEHMMVQDMLSPSP  314 (332)
T ss_dssp             HHHHHCCCC---CTHHHHHHHHHHHHHHHSCCCCHH----HHHHHHHHHHTTC--CCH-HHHHHCHHHHHHHHHHHCSSG
T ss_pred             hHHhcCCCC---cchhhHHHHHHHHHHHHHcCCChh----HHHHHHHHhhccC--CCc-ccccCChhHHHHHHHHccCCC
Confidence            999987655   899999999999999999877652    1223333333321  111 112356788999999999999


Q ss_pred             CCCCCHHHHHH
Q psy1840         175 ELRPDLRFVHH  185 (423)
Q Consensus       175 ~~RPt~~~I~~  185 (423)
                      ++|||+.++++
T Consensus       315 ~~Rps~~~~l~  325 (332)
T 3qd2_B          315 TERPEATDIIE  325 (332)
T ss_dssp             GGSCCHHHHHH
T ss_pred             CcCCCHHHHhh
Confidence            99999999876

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.93  E-value=9e-26  Score=221.24  Aligned_cols=144  Identities=17%  Similarity=0.262  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........   .....||+.|+|||.+.+..+ 
T Consensus       132 ~~~i~~qi~~~L~~LH~~~iv-H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~-  206 (335)
T 3dls_A          132 ASYIFRQLVSAVGYLRLKDII-HRDIKDENIVIAEDFTIKLIDFGSAAYLERGKL---FYTFCGTIEYCAPEVLMGNPY-  206 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTSCEEECCCTTCEECCTTCC---BCEECSCGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-EeccCHHHEEEcCCCcEEEeecccceECCCCCc---eeccCCCccccChhhhcCCCC-
Confidence            678999999999999999988 999999999999999999999999876543221   234568999999999987542 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                       .+.++|||||||++|||++|..||....        .......    ..+..+++++.+++.+||+.||++|||+.+++
T Consensus       207 -~~~~~DiwslG~il~el~~g~~pf~~~~--------~~~~~~~----~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell  273 (335)
T 3dls_A          207 -RGPELEMWSLGVTLYTLVFEENPFCELE--------ETVEAAI----HPPYLVSKELMSLVSGLLQPVPERRTTLEKLV  273 (335)
T ss_dssp             -CSHHHHHHHHHHHHHHHHHSSCSCSSGG--------GGTTTCC----CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             -CCCcccchhHHHHHHHHHhCCCchhhHH--------HHHhhcc----CCCcccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence             3788999999999999999999996421        1111111    11234789999999999999999999999998


Q ss_pred             HH
Q psy1840         185 HK  186 (423)
Q Consensus       185 ~~  186 (423)
                      +.
T Consensus       274 ~h  275 (335)
T 3dls_A          274 TD  275 (335)
T ss_dssp             HC
T ss_pred             cC
Confidence            74

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.93  E-value=9.6e-26  Score=240.12  Aligned_cols=158  Identities=22%  Similarity=0.454  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.|++.||.|||++|++ ||||||+|||++.++.+||+|||+++........ ......+++.|+|||.+.+..+ 
T Consensus       493 ~~~i~~qi~~aL~~LH~~giv-HrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~-  569 (656)
T 2j0j_A          493 LILYAYQLSTALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWMAPESINFRRF-  569 (656)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEEEETTEEEECCCCCCCSCCC-----------CCGGGCCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-ccccchHhEEEeCCCCEEEEecCCCeecCCCcce-eccCCCCCcceeCHHHhcCCCC-
Confidence            678999999999999999998 9999999999999999999999998765433211 1223456678999999977654 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||.+  ....++...+..+....  . +..+++.+.+++.+||+.||++||++.+|
T Consensus       570 --~~~~DiwSlG~il~ellt~g~~Pf~~--~~~~~~~~~i~~~~~~~--~-~~~~~~~l~~li~~~l~~dP~~RPs~~el  642 (656)
T 2j0j_A          570 --TSASDVWMFGVCMWEILMHGVKPFQG--VKNNDVIGRIENGERLP--M-PPNCPPTLYSLMTKCWAYDPSRRPRFTEL  642 (656)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHHTCCCC--C-CTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CchhhHHHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHHcCCCCC--C-CccccHHHHHHHHHHcCCChhHCcCHHHH
Confidence              899999999999999997 8999974  45567777776654322  1 23688999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       643 ~~~L~~il~  651 (656)
T 2j0j_A          643 KAQLSTILE  651 (656)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.93  E-value=7.4e-26  Score=224.77  Aligned_cols=153  Identities=22%  Similarity=0.241  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.+||+|||+++......   ......||+.|+|||++.+..+ 
T Consensus       129 ~~~i~~qi~~al~~lH~~~iv-H~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~-  203 (371)
T 2xrw_A          129 MSYLLYQMLCGIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVILGMGY-  203 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTSCEEECCCCC-------------------CTTCCHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHHHHHCCee-cccCCHHHEEEcCCCCEEEEEeeccccccccc---ccCCceecCCccCHHHhcCCCC-
Confidence            568999999999999999998 99999999999999999999999987543221   1234578899999999987654 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC-------------------CCCCCC----------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-------------------RPDTSS----------  155 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~-------------------~p~~~~----------  155 (423)
                        +.++|||||||++|||++|..||.+.  +..+....+......                   .|....          
T Consensus       204 --~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
T 2xrw_A          204 --KENVDIWSVGCIMGEMIKGGVLFPGT--DHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV  279 (371)
T ss_dssp             --CTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGG
T ss_pred             --CchHhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccc
Confidence              89999999999999999999999743  333333333321110                   010000          


Q ss_pred             ---------CCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         156 ---------LDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       156 ---------~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                               ...+.++.+|+.+||+.||.+|||+.++++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          280 LFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             GSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             cCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                     0125689999999999999999999999874

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.93  E-value=1.2e-25  Score=218.12  Aligned_cols=153  Identities=21%  Similarity=0.249  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......++..|+|||.+.+..+
T Consensus       121 ~~~~~~~qi~~~l~~lH~~gi~-H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~  196 (326)
T 1blx_A          121 TIKDMMFQLLRGLDFLHSHRVV-HRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSY  196 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTCCEEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCce-eccCCHHHeEEcCCCCEEEecCcccccccCCC---CccccccccceeCHHHHhcCCC
Confidence            3678999999999999999998 99999999999999999999999987543221   2234568899999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC-----------------------CCCCCCCCchH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-----------------------RPDTSSLDCAP  160 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~-----------------------~p~~~~~~~~~  160 (423)
                         +.++||||||+++|+|++|+.||...  ...+.+..+......                       ........++.
T Consensus       197 ---~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (326)
T 1blx_A          197 ---ATPVDLWSVGCIFAEMFRRKPLFRGS--SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDE  271 (326)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCH
T ss_pred             ---CcchhHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCH
Confidence               89999999999999999999999743  333444333311000                       00011235788


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .+.+++.+||+.||++||++.++++
T Consensus       272 ~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          272 LGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHhc
Confidence            9999999999999999999999875

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.93  E-value=1.1e-25  Score=218.99  Aligned_cols=151  Identities=21%  Similarity=0.243  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-------------------CccEEEeccCCcccccCCCcccccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-------------------RWVLQIADFGLHAFKAGQDETGQER   84 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-------------------~~~vKL~DFGla~~~~~~~~~~~~~   84 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.                   ++.+||+|||++......     ..
T Consensus       119 ~~~~~~~qi~~~l~~lH~~~iv-H~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~  192 (339)
T 1z57_A          119 HIRKMAYQICKSVNFLHSNKLT-HTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEH-----HS  192 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSC-----CC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCc-CCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccc-----cc
Confidence            3679999999999999999988 9999999999987                   678999999998764322     13


Q ss_pred             cccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCC-------------
Q psy1840          85 KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP-------------  151 (423)
Q Consensus        85 ~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p-------------  151 (423)
                      ...||+.|+|||++.+..+   +.++|||||||++|||++|..||...  +..+....+.......|             
T Consensus       193 ~~~gt~~y~aPE~~~~~~~---~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  267 (339)
T 1z57_A          193 TLVSTRHYRAPEVILALGW---SQPCDVWSIGCILIEYYLGFTVFPTH--DSKEHLAMMERILGPLPKHMIQKTRKRKYF  267 (339)
T ss_dssp             SSCSCGGGCCHHHHTTSCC---CTHHHHHHHHHHHHHHHHSSCSCCCS--CHHHHHHHHHHHHCSCCHHHHHHCSCGGGE
T ss_pred             cccCCccccChHHhhCCCC---CcchhhHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCCHHHHhhccchhHH
Confidence            4578899999999987655   89999999999999999999999743  33333332221100000             


Q ss_pred             ---------------------------CCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         152 ---------------------------DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       152 ---------------------------~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                                                 .......++++.+++.+||+.||.+|||+.++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  328 (339)
T 1z57_A          268 HHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK  328 (339)
T ss_dssp             ETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             hhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence                                       0111234678999999999999999999999875

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.93  E-value=5.8e-26  Score=229.42  Aligned_cols=157  Identities=20%  Similarity=0.259  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC---ccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~---~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.|++.||.|||++|++ ||||||+|||++.+   +.+||+|||+++.....   .......||+.|+|||++.+.
T Consensus       241 ~~~i~~qi~~~l~~LH~~~iv-HrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~  316 (419)
T 3i6u_A          241 CKLYFYQMLLAVQYLHENGII-HRDLKPENVLLSSQEEDCLIKITDFGHSKILGET---SLMRTLCGTPTYLAPEVLVSV  316 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEESSSSSSCCEEECCSSTTTSCC--------------CTTCCTTTTC--
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCChHhEEEecCCCcceEEEeecccceecCCC---ccccccCCCCCccCceeeecC
Confidence            678999999999999999998 99999999999754   45999999998865422   122356789999999998653


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      ....++.++|||||||++|+|++|..||..... ...+...+..+....+......+++.+.+++.+||+.||++||++.
T Consensus       317 ~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~  395 (419)
T 3i6u_A          317 GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT-QVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE  395 (419)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS-SCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc-hHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHH
Confidence            222347899999999999999999999975322 2234444444433222222245789999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       396 e~l~h  400 (419)
T 3i6u_A          396 EALRH  400 (419)
T ss_dssp             HHHHS
T ss_pred             HHhCC
Confidence            98764

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.93  E-value=1.6e-25  Score=231.40  Aligned_cols=154  Identities=22%  Similarity=0.347  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc---cEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW---VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~---~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++   .+||+|||++.......   ......||+.|+|||++.+
T Consensus       147 ~~~~i~~qi~~~l~~lH~~~iv-H~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~  222 (504)
T 3q5i_A          147 DAANIMKQILSGICYLHKHNIV-HRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLKK  222 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCeE-eCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCC---ccccccCCcCCCCHHHhcc
Confidence            3679999999999999999988 999999999998775   69999999987654322   2234578999999999875


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      . +   +.++||||+||++|+|++|..||.+  .+..+++..+..+....+......+++++.+++.+||+.||.+|||+
T Consensus       223 ~-~---~~~~DiwslG~il~~ll~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~  296 (504)
T 3q5i_A          223 K-Y---NEKCDVWSCGVIMYILLCGYPPFGG--QNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTA  296 (504)
T ss_dssp             C-B---CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             C-C---CchHHHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCH
Confidence            3 3   8999999999999999999999974  45677888888765443322234678999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         181 RFVHHKL  187 (423)
Q Consensus       181 ~~I~~~L  187 (423)
                      .++++.-
T Consensus       297 ~e~l~h~  303 (504)
T 3q5i_A          297 EEALNSR  303 (504)
T ss_dssp             HHHHTSH
T ss_pred             HHHhcCH
Confidence            9998753

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.93  E-value=1.5e-25  Score=222.45  Aligned_cols=152  Identities=19%  Similarity=0.225  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++.....     .....+|+.|+|||++.+..  
T Consensus       130 ~~~~~~qi~~~L~~LH~~~iv-H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~--  201 (367)
T 1cm8_A          130 IQFLVYQMLKGLRYIHAAGII-HRDLKPGNLAVNEDCELKILDFGLARQADSE-----MTGYVVTRWYRAPEVILNWM--  201 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEECCSS-----CCSSCSCGGGCCTHHHHTTT--
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCcCHHHEEEcCCCCEEEEeeecccccccc-----cCcCcCCCCcCCHHHHhCCC--
Confidence            568999999999999999988 9999999999999999999999998764322     23457889999999987632  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC-----------------------CCCCC----CCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS-----------------------GLRPD----TSSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~-----------------------~~~p~----~~~~~  157 (423)
                      .++.++||||+||++|||++|+.||.+.  +..+.+..+....                       +..+.    .....
T Consensus       202 ~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (367)
T 1cm8_A          202 RYTQTVDIWSVGCIMAEMITGKTLFKGS--DHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTN  279 (367)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTT
T ss_pred             CCChhhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCC
Confidence            2489999999999999999999999753  2222222222100                       00000    01135


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +++.+.+|+.+||..||.+|||+.++++.
T Consensus       280 ~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          280 ASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             CCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence            68899999999999999999999998763

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.93  E-value=1.9e-25  Score=213.54  Aligned_cols=149  Identities=22%  Similarity=0.371  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSE--IISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.||+.||.|||+.+  ++ ||||||+||+++ .++.+||+|||++.......    .....+++.|+|||.+.+.
T Consensus       131 ~~~~~~qi~~~l~~lH~~~~~i~-H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~~~~  205 (290)
T 1t4h_A          131 LRSWCRQILKGLQFLHTRTPPII-HRDLKCDNIFITGPTGSVKIGDLGLATLKRASF----AKAVIGTPEFMAPEMYEEK  205 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCC-CSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS----BEESCSSCCCCCGGGGGTC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEE-ECCCCHHHEEEECCCCCEEEeeCCCcccccccc----cccccCCcCcCCHHHHhcc
Confidence            6789999999999999998  88 999999999998 78999999999986543221    2345688999999988753


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                          ++.++||||||+++|+|++|..||... .....+...+..+.  .+.......++++.+++.+||+.||.+|||+.
T Consensus       206 ----~~~~~Di~slG~~l~~l~~g~~pf~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  278 (290)
T 1t4h_A          206 ----YDESVDVYAFGMCMLEMATSEYPYSEC-QNAAQIYRRVTSGV--KPASFDKVAIPEVKEIIEGCIRQNKDERYSIK  278 (290)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHSSCTTTTC-SSHHHHHHHHTTTC--CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             ----CCCcchHHHHHHHHHHHHhCCCCCCCc-CcHHHHHHHHhccC--CccccCCCCCHHHHHHHHHHccCChhhCCCHH
Confidence                389999999999999999999999753 33455555555432  22222335678999999999999999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      ++++
T Consensus       279 ell~  282 (290)
T 1t4h_A          279 DLLN  282 (290)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            9875

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.93  E-value=8.5e-26  Score=230.47  Aligned_cols=159  Identities=19%  Similarity=0.257  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc------------------------
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET------------------------   80 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~------------------------   80 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++........                        
T Consensus       158 ~~~~~~qi~~aL~~LH~~~ii-HrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (458)
T 3rp9_A          158 IKTLLYNLLVGVKYVHSAGIL-HRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNL  236 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCcC-CCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccc
Confidence            578999999999999999998 9999999999999999999999999865422110                        


Q ss_pred             -cccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHh-----------CCCCCCCCCCC-------------
Q psy1840          81 -GQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIG-----------RQGPWGHLRMT-------------  135 (423)
Q Consensus        81 -~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~ellt-----------g~~Pf~~~~~~-------------  135 (423)
                       .......||+.|+|||++....  .++.++|||||||++|||++           |+.+|.+....             
T Consensus       237 ~~~~~~~~gt~~Y~aPE~~~~~~--~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~  314 (458)
T 3rp9_A          237 KRQLTGHVVTRWYRAPELILLQE--NYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFK  314 (458)
T ss_dssp             --------CCCTTCCHHHHTTCC--CCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC------------------
T ss_pred             cccccCCcccccccChHHhhCCC--CCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCcccccccccccccccc
Confidence             1123456799999999864332  24899999999999999998           56666442210             


Q ss_pred             -----hHHHHHHHh-----------------------cCCCCCCC----CCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         136 -----DEEIITSVT-----------------------QGSGLRPD----TSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       136 -----~~~i~~~i~-----------------------~~~~~~p~----~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                           ..+.+..+.                       ...+....    .....+++++.+|+.+||..||++|||+.++
T Consensus       315 ~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~  394 (458)
T 3rp9_A          315 FHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITINEC  394 (458)
T ss_dssp             --CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCHHHH
Confidence                 001111110                       00000000    0113458899999999999999999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       395 L~H  397 (458)
T 3rp9_A          395 LAH  397 (458)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.93  E-value=5.6e-26  Score=215.70  Aligned_cols=150  Identities=21%  Similarity=0.267  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+.+..+
T Consensus       113 ~~~~~~~qi~~~l~~lH~~~i~-H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  189 (278)
T 3cok_A          113 EARHFMHQIITGMLYLHSHGIL-HRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE--KHYTLCGTPNYISPEIATRSAH  189 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSSCCGGGEEECTTCCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCCHHHEEEcCCCCEEEEeecceeeccCCCC--cceeccCCCCcCCcchhcCCCC
Confidence            3689999999999999999988 999999999999999999999999876532221  1234568889999999987654


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|||++|..||.....  .+....+......    .+..++.++.+++.+||+.||++||++.++
T Consensus       190 ---~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~li~~~l~~dp~~Rps~~~~  260 (278)
T 3cok_A          190 ---GLESDVWSLGCMFYTLLIGRPPFDTDTV--KNTLNKVVLADYE----MPSFLSIEAKDLIHQLLRRNPADRLSLSSV  260 (278)
T ss_dssp             -----CTHHHHHHHHHHHHHHSSCSSCCCSC--C-----CCSSCCC----CCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCChhH--HHHHHHHhhcccC----CccccCHHHHHHHHHHcccCHhhCCCHHHH
Confidence               8899999999999999999999975332  2222222222111    123578899999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       261 l~  262 (278)
T 3cok_A          261 LD  262 (278)
T ss_dssp             TT
T ss_pred             hc
Confidence            76

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.93  E-value=1.2e-25  Score=215.32  Aligned_cols=151  Identities=21%  Similarity=0.333  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+.+...
T Consensus       116 ~~~~i~~qi~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  192 (294)
T 2rku_A          116 EARYYLRQIVLGCQYLHRNRVI-HRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVLSKKGH  192 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHHTTSCB
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-ccCCChHhEEEcCCCCEEEEeccCceecccCcc--ccccccCCCCcCCcchhccCCC
Confidence            3689999999999999999988 999999999999999999999999876532221  1234568899999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|+|++|..||..  ....+....+.......|    ..+++.+.+++.+||+.||++|||+.++
T Consensus       193 ---~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~Rps~~~l  263 (294)
T 2rku_A          193 ---SFEVDVWSIGCIMYTLLVGKPPFET--SCLKETYLRIKKNEYSIP----KHINPVAASLIQKMLQTDPTARPTINEL  263 (294)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCCCCC----TTSCHHHHHHHHHHTCSSGGGSCCGGGG
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHhhccCCCc----cccCHHHHHHHHHHcccChhhCcCHHHH
Confidence               8899999999999999999999974  334555555555433222    3578899999999999999999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       264 l~~  266 (294)
T 2rku_A          264 LND  266 (294)
T ss_dssp             GGS
T ss_pred             hhC
Confidence            764

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.93  E-value=2.1e-25  Score=215.50  Aligned_cols=154  Identities=16%  Similarity=0.264  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+.+..+
T Consensus       126 ~~~~i~~~i~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  202 (314)
T 3com_A          126 EIATILQSTLKGLEYLHFMRKI-HRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGY  202 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTCCEEECCCTTCEECBTTBS--CBCCCCSCGGGCCHHHHSSSCB
T ss_pred             HHHHHHHHHHHHHHHHHhCCCc-CCCcCHHHEEECCCCCEEEeecccchhhhhhcc--ccCccCCCCCccChhhcCCCCC
Confidence            3689999999999999999988 999999999999999999999999876543221  2234568889999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|+|++|..||...  ........+......... ....++..+.+++.+||+.||.+|||+.++
T Consensus       203 ---~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rpt~~~l  276 (314)
T 3com_A          203 ---NCVADIWSLGITAIEMAEGKPPYADI--HPMRAIFMIPTNPPPTFR-KPELWSDNFTDFVKQCLVKSPEQRATATQL  276 (314)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHSSCTTTTS--CHHHHHHHHHHSCCCCCS-SGGGSCHHHHHHHHHHTCSCTTTSCCHHHH
T ss_pred             ---CccccHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHhcCCCcccC-CcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence               89999999999999999999999743  333444444333221111 123468899999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       277 l~~  279 (314)
T 3com_A          277 LQH  279 (314)
T ss_dssp             TTS
T ss_pred             HhC
Confidence            774

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.93  E-value=3e-26  Score=231.13  Aligned_cols=144  Identities=15%  Similarity=0.081  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC---
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP---  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~---  101 (423)
                      ++.++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++.....     .....| +.|+|||++.+.   
T Consensus       213 ~~~i~~qi~~aL~~LH~~~ii-HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~  285 (413)
T 3dzo_A          213 RLQLTLQVIRLLASLHHYGLV-HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLP  285 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccc
Confidence            678889999999999999988 9999999999999999999999998754322     234466 889999999311   


Q ss_pred             ----CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840         102 ----HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus       102 ----~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                          ....++.++|||||||++|||++|+.||....  ..+....+..        ....+++.+.+++.+||+.||++|
T Consensus       286 ~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~--~~~~~~~~~~--------~~~~~~~~~~~li~~~l~~dP~~R  355 (413)
T 3dzo_A          286 FGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDA--ALGGSEWIFR--------SCKNIPQPVRALLEGFLRYPKEDR  355 (413)
T ss_dssp             TGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTG--GGSCSGGGGS--------SCCCCCHHHHHHHHHHTCSSGGGS
T ss_pred             cccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcc--hhhhHHHHHh--------hcccCCHHHHHHHHHHccCChhhC
Confidence                11123789999999999999999999997431  1111111111        112568999999999999999999


Q ss_pred             CCHHHHHH
Q psy1840         178 PDLRFVHH  185 (423)
Q Consensus       178 Pt~~~I~~  185 (423)
                      |++.++++
T Consensus       356 pt~~~~l~  363 (413)
T 3dzo_A          356 LLPLQAME  363 (413)
T ss_dssp             CCHHHHTT
T ss_pred             cCHHHHHh
Confidence            99988865

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.92  E-value=2.9e-25  Score=214.56  Aligned_cols=156  Identities=22%  Similarity=0.361  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-  102 (423)
                      ...++.||+.||.|||++ |++ ||||||+||+++.++.+||+|||++.......   ......+++.|+|||.+.... 
T Consensus       126 ~~~~~~~i~~~l~~lH~~~~i~-H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~  201 (318)
T 2dyl_A          126 LGKMTVAIVKALYYLKEKHGVI-HRDVKPSNILLDERGQIKLCDFGISGRLVDDK---AKDRSAGCAAYMAPERIDPPDP  201 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCC-CCCCCGGGEEECTTSCEEECCCTTC-----------------CCTTCCHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHhhCCEE-eCCCCHHHEEECCCCCEEEEECCCchhccCCc---cccccCCCccccChhhcccccc
Confidence            679999999999999995 998 99999999999999999999999986543322   123446888999999986321 


Q ss_pred             -CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 -LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 -~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                       ...++.++||||||+++|||++|..||.... ...+....+..+...... ....+++++.+++.+||+.||.+||++.
T Consensus       202 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~  279 (318)
T 2dyl_A          202 TKPDYDIRADVWSLGISLVELATGQFPYKNCK-TDFEVLTKVLQEEPPLLP-GHMGFSGDFQSFVKDCLTKDHRKRPKYN  279 (318)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHSSCTTTTCC-SHHHHHHHHHHSCCCCCC-SSSCCCHHHHHHHHHHTCSCTTTSCCHH
T ss_pred             cccCCccccchhhHHHHHHHHHhCCCCCCCCC-ccHHHHHHHhccCCCCCC-ccCCCCHHHHHHHHHHccCChhHCcCHH
Confidence             1134889999999999999999999997533 344555555544322211 1235789999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       280 ~ll~h  284 (318)
T 2dyl_A          280 KLLEH  284 (318)
T ss_dssp             HHTTS
T ss_pred             HHhhC
Confidence            99764

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.92  E-value=1.4e-25  Score=214.90  Aligned_cols=156  Identities=17%  Similarity=0.268  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC--
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP--  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~--  101 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......+++.|+|||.+.+.  
T Consensus       125 ~~~~~~~qi~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~  200 (298)
T 1phk_A          125 ETRKIMRALLEVICALHKLNIV-HRDLKPENILLDDDMNIKLTDFGFSCQLDPGE---KLREVCGTPSYLAPEIIECSMN  200 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCCTTCEECCTTC---CBCCCCSCGGGCCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCcceEEEcCCCcEEEecccchhhcCCCc---ccccccCCccccCHHHhccccc
Confidence            3689999999999999999988 99999999999999999999999987654322   12345688899999998521  


Q ss_pred             -CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         102 -HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       102 -~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                       ....++.++||||||+++|+|++|..||..  ....+....+..+....+......++..+.+++.+||+.||.+|||+
T Consensus       201 ~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  278 (298)
T 1phk_A          201 DNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH--RKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTA  278 (298)
T ss_dssp             TTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCH
T ss_pred             cccccCCcccccHhHHHHHHHHHHCCCCCcC--ccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCH
Confidence             111348899999999999999999999964  34556666666654433333334678999999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .++++
T Consensus       279 ~~ll~  283 (298)
T 1phk_A          279 EEALA  283 (298)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            99875

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.92  E-value=2.1e-25  Score=225.33  Aligned_cols=154  Identities=21%  Similarity=0.181  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-ccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.+ +.+||+|||+++.......   .....+|+.|+|||++.+.. 
T Consensus       158 ~~~~~~qi~~aL~~LH~~~iv-HrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~-  232 (420)
T 1j1b_A          158 VKLYMYQLFRSLAYIHSFGIC-HRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELIFGAT-  232 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCSCCSCTTSCCHHHHTTCS-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCChhhEEEeCCCCeEEeccchhhhhcccCCC---ceeeeeCCCcCCHHHHcCCC-
Confidence            578999999999999999988 99999999999955 6789999999986533221   23457889999999987642 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--------------C---CCCCCCC--------CCCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--------------G---SGLRPDT--------SSLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--------------~---~~~~p~~--------~~~~~  158 (423)
                       .++.++|||||||++|||++|+.||.+.  +..+.+..+..              .   ....|..        .....
T Consensus       233 -~~~~~~DiwSlG~il~ell~G~~pf~~~--~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  309 (420)
T 1j1b_A          233 -DYTSSIDVWSAGCVLAELLLGQPIFPGD--SGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRT  309 (420)
T ss_dssp             -SCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTS
T ss_pred             -CCCchhhhHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCC
Confidence             2389999999999999999999999753  22222222211              0   0011111        11246


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++++.+|+.+||+.||.+||++.++++.
T Consensus       310 ~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          310 PPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence            7899999999999999999999998753

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.92  E-value=1.2e-25  Score=219.99  Aligned_cols=151  Identities=21%  Similarity=0.333  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..+
T Consensus       142 ~~~~i~~qi~~aL~~LH~~~iv-H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~  218 (335)
T 2owb_A          142 EARYYLRQIVLGCQYLHRNRVI-HRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVLSKKGH  218 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHHHTSCB
T ss_pred             HHHHHHHHHHHHHHHHHHCCCE-ecCCCchhEEEcCCCCEEEeeccCceecccCcc--cccccCCCccccCHHHhccCCC
Confidence            3689999999999999999988 999999999999999999999999876532221  1234568899999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++||||||+++|+|++|+.||..  ....+....+.......|    ..+++.+.+++.+||+.||++||++.++
T Consensus       219 ---~~~~Di~slG~il~~l~~g~~pf~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~dp~~Rps~~el  289 (335)
T 2owb_A          219 ---SFEVDVWSIGCIMYTLLVGKPPFET--SCLKETYLRIKKNEYSIP----KHINPVAASLIQKMLQTDPTARPTINEL  289 (335)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCCC----TTSCHHHHHHHHHHTCSSGGGSCCGGGG
T ss_pred             ---CchhhHHHHHHHHHHHHHCcCCCCC--CCHHHHHHHHhcCCCCCC----ccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence               8899999999999999999999974  334555555555433222    3578899999999999999999999998


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       290 l~~  292 (335)
T 2owb_A          290 LND  292 (335)
T ss_dssp             GGS
T ss_pred             hcC
Confidence            764

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.92  E-value=1.8e-25  Score=232.31  Aligned_cols=146  Identities=25%  Similarity=0.384  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.+|.+||+|||+++.......  ......||+.|+|||++.+..+ 
T Consensus       291 ~~~~~~qi~~aL~~LH~~gIv-HrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~--~~~~~~GT~~Y~APE~l~~~~~-  366 (543)
T 3c4z_A          291 AIFYTAQIVSGLEHLHQRNII-YRDLKPENVLLDDDGNVRISDLGLAVELKAGQT--KTKGYAGTPGFMAPELLLGEEY-  366 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTSCEEECCCTTCEECCTTCC--CBCCCCSCTTTSCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHHcCCc-ccCCChHHEEEeCCCCEEEeecceeeeccCCCc--ccccccCCccccChhhhcCCCC-
Confidence            578899999999999999988 999999999999999999999999876543221  1234589999999999988655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        +.++|||||||++|||++|..||....  ....++...+.......|    ..+++.+.+++.+||+.||.+||++
T Consensus       367 --~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~  438 (543)
T 3c4z_A          367 --DFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYP----DKFSPASKDFCEALLQKDPEKRLGF  438 (543)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred             --ChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCC----cccCHHHHHHHHHhccCCHhHCCCC
Confidence              899999999999999999999997542  244666666665443333    3578999999999999999999975

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.92  E-value=2.7e-25  Score=210.52  Aligned_cols=152  Identities=19%  Similarity=0.291  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......+++.|+|||.+.+..
T Consensus       111 ~~~~~~~~qi~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~  186 (276)
T 2h6d_A          111 MEARRLFQQILSAVDYCHRHMVV-HRDLKPENVLLDAHMNAKIADFGLSNMMSDGE---FLRTSCGSPNYAAPEVISGRL  186 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSS-CCCCCGGGEEECTTSCEEECCCCGGGCCCC----------------CCTGGGTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCc-cCCCChhhEEECCCCCEEEeecccccccCCCc---ceecccCCccccCHHHHcCCC
Confidence            34689999999999999999998 99999999999999999999999987653321   123446788999999998754


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      .  .+.++||||||+++|+|++|..||..  ....++...+..+....|    ..++..+.+++.+||+.||++|||+.+
T Consensus       187 ~--~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~----~~~~~~l~~li~~~l~~~p~~Rps~~~  258 (276)
T 2h6d_A          187 Y--AGPEVDIWSCGVILYALLCGTLPFDD--EHVPTLFKKIRGGVFYIP----EYLNRSVATLLMHMLQVDPLKRATIKD  258 (276)
T ss_dssp             C--CHHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             C--CCccchHHHHHHHHHHHHhCCCCCCC--CcHHHHHHHhhcCcccCc----hhcCHHHHHHHHHHccCChhhCCCHHH
Confidence            2  25799999999999999999999974  345566666665543332    356889999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       259 ~l~h  262 (276)
T 2h6d_A          259 IREH  262 (276)
T ss_dssp             HHHS
T ss_pred             HHhC
Confidence            9874

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.92  E-value=9.9e-26  Score=226.38  Aligned_cols=159  Identities=18%  Similarity=0.227  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE----cCCccEEEeccCCcccccCCCc-ccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI----DSRWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl----d~~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||+    +.++.+||+|||+++....... ........||+.|+|||++.
T Consensus       130 ~~~i~~qi~~al~~LH~~~iv-H~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  208 (405)
T 3rgf_A          130 VKSLLYQILDGIHYLHANWVL-HRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLL  208 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-CCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhc
Confidence            578999999999999999998 99999999999    7789999999999876543221 12224567899999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC-------hHHHHHHHhcCCCCCCCCC------------------
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT-------DEEIITSVTQGSGLRPDTS------------------  154 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~-------~~~i~~~i~~~~~~~p~~~------------------  154 (423)
                      +..  .++.++|||||||++|||++|..||......       ..+.+..+.......+...                  
T Consensus       209 ~~~--~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  286 (405)
T 3rgf_A          209 GAR--HYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFR  286 (405)
T ss_dssp             TCC--SCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCC
T ss_pred             CCC--cccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhcc
Confidence            743  2489999999999999999999999643221       1122222221100000000                  


Q ss_pred             ----------------CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         155 ----------------SLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       155 ----------------~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                      ....++.+.+|+.+||+.||.+|||+.++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~h  334 (405)
T 3rgf_A          287 RNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD  334 (405)
T ss_dssp             GGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                            01125688999999999999999999998864

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.92  E-value=1.2e-25  Score=219.32  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE-----cCCccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI-----DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl-----d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.||+.||.|||+.|++ ||||||+||++     +.++.+||+|||++........  ......+|+.|+|||++.
T Consensus       134 ~~~i~~ql~~~l~~LH~~~iv-H~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~  210 (329)
T 3gbz_A          134 IKSFLYQLINGVNFCHSRRCL-HRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIR--QFTHEIITLWYRPPEILL  210 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-------------CCTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-CCCCCHHHEEEecCCCCccceEEECcCCCccccCCccc--ccCCCcCCccccCHHHhc
Confidence            578999999999999999998 99999999999     4556699999999876532211  123446788999999997


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC------------------C-------
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT------------------S-------  154 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~------------------~-------  154 (423)
                      +..  .++.++|||||||++|||++|..||...  ...+.+..+.......+..                  .       
T Consensus       211 ~~~--~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (329)
T 3gbz_A          211 GSR--HYSTSVDIWSIACIWAEMLMKTPLFPGD--SEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRV  286 (329)
T ss_dssp             TCC--CCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHH
T ss_pred             CCC--CCCcHHHHHHHHHHHHHHHHCCCCcCCC--CHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhh
Confidence            643  2489999999999999999999999743  3334443333211000000                  0       


Q ss_pred             -CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         155 -SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       155 -~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                       ...+++++.+++.+||+.||++|||+.++++
T Consensus       287 ~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          287 LGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             HGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence             0115688999999999999999999999876

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.92  E-value=7.1e-26  Score=229.80  Aligned_cols=157  Identities=24%  Similarity=0.357  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC-------------ccEEEeccCCcccccCCCcc--cccccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR-------------WVLQIADFGLHAFKAGQDET--GQERKLRRR   89 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~-------------~~vKL~DFGla~~~~~~~~~--~~~~~~~gt   89 (423)
                      .+.++.||+.||.|||+.|++ ||||||+|||++.+             +.+||+|||+++........  .......||
T Consensus       117 ~~~i~~qi~~aL~~LH~~~iv-HrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt  195 (434)
T 2rio_A          117 PISLLRQIASGVAHLHSLKII-HRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGT  195 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------C
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-ccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCC
Confidence            478999999999999999988 99999999999754             48999999998865433221  112345789


Q ss_pred             ccccCCccccCCC----CCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCC---CCCCCchHH
Q psy1840          90 KLYKAPELLRQPH----LPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPD---TSSLDCAPS  161 (423)
Q Consensus        90 ~~y~APE~l~~~~----~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~---~~~~~~~~~  161 (423)
                      +.|+|||++.+..    ....+.++|||||||++|||++ |..||........    .+..+....+.   .....++++
T Consensus       196 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~  271 (434)
T 2rio_A          196 SGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES----NIIRGIFSLDEMKCLHDRSLIAE  271 (434)
T ss_dssp             CTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH----HHHHTCCCCCCCTTCCCHHHHHH
T ss_pred             CCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH----HHhcCCCCcccccccccccchHH
Confidence            9999999997621    1235899999999999999998 8999975332222    22222211111   112245688


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         162 IIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       162 l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +.+++.+||+.||.+|||+.+|++.
T Consensus       272 ~~~li~~~L~~dP~~Rps~~eil~h  296 (434)
T 2rio_A          272 ATDLISQMIDHDPLKRPTAMKVLRH  296 (434)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHhhCChhhCCCHHHHHhC
Confidence            9999999999999999999998763

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.92  E-value=2e-25  Score=218.72  Aligned_cols=156  Identities=18%  Similarity=0.259  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC---CccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS---RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~---~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.   ++.+||+|||++......    ......+++.|+|||.+.+
T Consensus       129 ~~~~i~~ql~~~l~~LH~~~iv-H~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~t~~y~aPE~~~~  203 (336)
T 3fhr_A          129 EAAEIMRDIGTAIQFLHSHNIA-HRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQN----ALQTPCYTPYYVAPEVLGP  203 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEESCSSTTCCEEECCCTTCEEC--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEEecCCCceEEEeccccceecccc----ccccCCCCcCccChhhhCC
Confidence            3689999999999999999988 9999999999976   456999999998754322    1234567889999999976


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh--HHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD--EEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP  178 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~--~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP  178 (423)
                      ..+   +.++||||||+++|+|++|..||.......  ......+..+....+......+++++.+++.+||+.||.+||
T Consensus       204 ~~~---~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  280 (336)
T 3fhr_A          204 EKY---DKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERL  280 (336)
T ss_dssp             CHH---HHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSC
T ss_pred             CCC---CchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCc
Confidence            655   889999999999999999999996432111  111222222222223333346899999999999999999999


Q ss_pred             CHHHHHHHH
Q psy1840         179 DLRFVHHKL  187 (423)
Q Consensus       179 t~~~I~~~L  187 (423)
                      |+.++++.-
T Consensus       281 t~~ell~hp  289 (336)
T 3fhr_A          281 TITQFMNHP  289 (336)
T ss_dssp             CHHHHHHSH
T ss_pred             CHHHHhcCc
Confidence            999998743

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.92  E-value=2.9e-25  Score=225.09  Aligned_cols=159  Identities=20%  Similarity=0.285  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--------------------cccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--------------------GQER   84 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--------------------~~~~   84 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++........                    ....
T Consensus       131 ~~~i~~qil~aL~~LH~~giv-HrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (432)
T 3n9x_A          131 IKTILYNLLLGENFIHESGII-HRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLT  209 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEEC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHCCCC-CCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhcccc
Confidence            678999999999999999988 9999999999999999999999999865432211                    1124


Q ss_pred             cccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCC-----------CCCCC-------------------
Q psy1840          85 KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW-----------GHLRM-------------------  134 (423)
Q Consensus        85 ~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf-----------~~~~~-------------------  134 (423)
                      ...||+.|+|||++....  .++.++|||||||++|||++|..||           .+...                   
T Consensus       210 ~~~gt~~Y~APE~~~~~~--~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~  287 (432)
T 3n9x_A          210 SHVVTRWYRAPELILLQE--NYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRD  287 (432)
T ss_dssp             -CCCCCTTCCHHHHTTCS--CCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHH
T ss_pred             CCCCCccccCHHHHhcCC--CCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchHH
Confidence            567899999999864432  2489999999999999999854443           22110                   


Q ss_pred             --------------------ChHHHHHHHhcCCCCCCCC---CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         135 --------------------TDEEIITSVTQGSGLRPDT---SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       135 --------------------~~~~i~~~i~~~~~~~p~~---~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                          ........+.......+..   ....+++++.+|+.+||+.||.+|||+.++++.
T Consensus       288 ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  362 (432)
T 3n9x_A          288 QLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDH  362 (432)
T ss_dssp             HHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTC
T ss_pred             HHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                                0011111111111111100   013578999999999999999999999998763

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.92  E-value=1.1e-25  Score=224.41  Aligned_cols=150  Identities=17%  Similarity=0.276  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHh--CCCeeecCCCCCCEEEc--CCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHD--SEIISHGNLRSSNCLID--SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~--~~ii~HrDLkp~NILld--~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.|++.||.|||+  .|++ ||||||+|||++  .++.+||+|||++......     .....+|+.|+|||++.+
T Consensus       159 ~~~i~~qi~~al~~lH~~~~~iv-HrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~  232 (382)
T 2vx3_A          159 TRKFAQQMCTALLFLATPELSII-HCDLKPENILLCNPKRSAIKIVDFGSSCQLGQR-----IYQYIQSRFYRSPEVLLG  232 (382)
T ss_dssp             HHHHHHHHHHHHHHHTSTTTCEE-CCCCSGGGEEESSTTSCCEEECCCTTCEETTCC-----CCSSCSCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccCCCCEE-cCCCCcccEEEecCCCCcEEEEeccCceecccc-----cccccCCccccChHHHcC
Confidence            67999999999999994  5777 999999999994  5788999999998765322     234578899999999988


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCC------------------------------
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR------------------------------  150 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~------------------------------  150 (423)
                      ..+   +.++|||||||++|||++|+.||...  +..+.+..+.......                              
T Consensus       233 ~~~---~~~~DiwSlG~il~elltg~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (382)
T 2vx3_A          233 MPY---DLAIDMWSLGCILVEMHTGEPLFSGA--NEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKD  307 (382)
T ss_dssp             CCC---CTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCT
T ss_pred             CCC---CcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccc
Confidence            655   89999999999999999999999743  3334443333210000                              


Q ss_pred             ------CCCCC------------------------CCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         151 ------PDTSS------------------------LDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       151 ------p~~~~------------------------~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                            +....                        ....+++.+|+.+||+.||++|||+.++++
T Consensus       308 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~  372 (382)
T 2vx3_A          308 GKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQ  372 (382)
T ss_dssp             TCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             cccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhc
Confidence                  00000                        001147899999999999999999999875

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.92  E-value=4e-25  Score=213.24  Aligned_cols=155  Identities=20%  Similarity=0.315  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......++..|+|||.+.+..  
T Consensus       104 ~~~i~~~l~~~l~~lH~~~iv-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~--  178 (311)
T 4agu_A          104 VKSITWQTLQAVNFCHKHNCI-HRDVKPENILITKHSVIKLCDFGFARLLTGPSD--YYDDEVATRWYRSPELLVGDT--  178 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECC--------------GGGCCHHHHHTCS--
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-CCCCChhhEEEcCCCCEEEeeCCCchhccCccc--ccCCCcCCccccChHHHhcCC--
Confidence            678999999999999999988 999999999999999999999999876543222  123456888999999987633  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-------------------CCCCCCCC--------CCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-------------------SGLRPDTS--------SLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-------------------~~~~p~~~--------~~~  157 (423)
                      .++.++||||||+++|+|++|..||.+.  ...+....+...                   ....+...        ...
T Consensus       179 ~~~~~~Di~slG~il~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 4agu_A          179 QYGPPVDVWAIGCVFAELLSGVPLWPGK--SDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPN  256 (311)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTT
T ss_pred             CCCcchhhHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhccc
Confidence            2389999999999999999999999753  233333222210                   00001000        135


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++..+.+++.+||+.||++|||+.++++.
T Consensus       257 ~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          257 ISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             CCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             ccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            78889999999999999999999999763

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.92  E-value=3.1e-25  Score=218.42  Aligned_cols=154  Identities=17%  Similarity=0.163  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHH--hCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLH--DSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH--~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.|++.||.|||  +.|++ ||||||+||+++. ++.+||+|||++........   .....+|+.|+|||.+.+.
T Consensus       131 ~~~~~~qi~~al~~lH~~~~~iv-H~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~  206 (360)
T 3e3p_A          131 IKVFLFQLIRSIGCLHLPSVNVC-HRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGN  206 (360)
T ss_dssp             HHHHHHHHHHHHHHHTSTTTCCB-CSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCee-cCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCC---cccccCCcceeCHHHHcCC
Confidence            5689999999999999  99998 9999999999996 89999999999876543322   2345678999999998654


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCC----------------------------CCC
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR----------------------------PDT  153 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~----------------------------p~~  153 (423)
                      .  .++.++|||||||++|||++|+.||...  ...+.+..+.......                            ...
T Consensus       207 ~--~~~~~~Di~slG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (360)
T 3e3p_A          207 Q--HYTTAVDIWSVGCIFAEMMLGEPIFRGD--NSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSD  282 (360)
T ss_dssp             S--SCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTT
T ss_pred             C--CCCcHHHHHHHHHHHHHHHhCCCCcCCC--ChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccch
Confidence            3  2489999999999999999999999753  3333333332110000                            000


Q ss_pred             CCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       154 ~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .....++++.+++.+||+.||.+|||+.++++.
T Consensus       283 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          283 HSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             CCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             hhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            112367899999999999999999999998753

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.92  E-value=1.8e-25  Score=222.85  Aligned_cols=153  Identities=18%  Similarity=0.172  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++ .++.+||+|||+++.......   .....+++.|+|||.+.+.. 
T Consensus       143 ~~~i~~qi~~aL~~LH~~gi~-H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~-  217 (383)
T 3eb0_A          143 ISIYIYQLFRAVGFIHSLGIC-HRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGAT-  217 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCS-
T ss_pred             HHHHHHHHHHHHHHHHHCcCc-cCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCC-
Confidence            578999999999999999988 999999999998 689999999999876543322   23456788999999987643 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------CCCCCCC--------CCCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------SGLRPDT--------SSLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------~~~~p~~--------~~~~~  158 (423)
                       .++.++||||+||++|||++|+.||.+.  +..+.+..+...                 ....|..        ....+
T Consensus       218 -~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (383)
T 3eb0_A          218 -EYTPSIDLWSIGCVFGELILGKPLFSGE--TSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGT  294 (383)
T ss_dssp             -SCCTHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTC
T ss_pred             -CCCcchhhhhHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCC
Confidence             2389999999999999999999999743  333333332210                 0001111        12346


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++++.+|+.+||+.||.+|||+.++++
T Consensus       295 ~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          295 PSLAIDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            889999999999999999999999875

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.92  E-value=1.5e-25  Score=222.58  Aligned_cols=153  Identities=18%  Similarity=0.242  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++.....     .....+|+.|+|||++.+.. 
T Consensus       133 ~~~~i~~qi~~aL~~LH~~giv-H~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~-  205 (367)
T 2fst_X          133 HVQFLIYQILRGLKYIHSADII-HRDLKPSNLAVNEDCELKILDFGLARHTADE-----MTGYVATRWYRAPEIMLNWM-  205 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTCCEEECC--------------------CCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-eCCCCHhhEEECCCCCEEEeecccccccccc-----CCCcCcCcCccChHHHcCCc-
Confidence            3678999999999999999998 9999999999999999999999998764322     23457889999999987632 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------------CCCCCCCC----CC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------------SGLRPDTS----SL  156 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------------~~~~p~~~----~~  156 (423)
                       .++.++|||||||++|||++|+.||.+.  +..+.+..+...                       ....+...    ..
T Consensus       206 -~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (367)
T 2fst_X          206 -HYNQTVDIWSVGCIMAELLTGRTLFPGT--DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFI  282 (367)
T ss_dssp             -SCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTT
T ss_pred             -CCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCC
Confidence             2489999999999999999999999753  223333222210                       00011110    12


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .+++.+.+|+.+||+.||.+|||+.+++..
T Consensus       283 ~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          283 GANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             TCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence            467889999999999999999999998763

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.92  E-value=1.2e-25  Score=224.33  Aligned_cols=158  Identities=15%  Similarity=0.227  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-----ccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-----TGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-----~~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||.+........     ........|++.|+|||++.
T Consensus       130 ~~~~~~qi~~~l~~LH~~~iv-HrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  208 (389)
T 3gni_B          130 IAYILQGVLKALDYIHHMGYV-HRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQ  208 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHh
Confidence            678999999999999999988 999999999999999999999998754322111     11122346888899999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCC-------------------------------
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG-------------------------------  148 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~-------------------------------  148 (423)
                      +... .++.++|||||||++|||++|+.||.+.....  ....+..+..                               
T Consensus       209 ~~~~-~~~~~~DiwslG~il~el~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (389)
T 3gni_B          209 QNLQ-GYDAKSDIYSVGITACELANGHVPFKDMPATQ--MLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSL  285 (389)
T ss_dssp             TTSS-CBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTT--HHHHC------------------------------------
T ss_pred             ccCC-CCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHhcCCCCcccccccccccccccccccccccccccccc
Confidence            7321 24899999999999999999999997543221  1111110000                               


Q ss_pred             -----------CCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         149 -----------LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       149 -----------~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                 .........+++.+.+|+.+||+.||++|||+.++++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          286 TTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             --------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             ccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence                       00001123467889999999999999999999998753

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.9e-25  Score=225.21  Aligned_cols=157  Identities=24%  Similarity=0.313  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-----CCccEEEeccCCcccccCCCc-ccccccccCCccccCCccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID-----SRWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELL   98 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-----~~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l   98 (423)
                      .+.++.||+.||.|||+.|++ ||||||+||+++     ....+||+|||+++....... ........||+.|+|||++
T Consensus       120 ~~~i~~qi~~aL~~LH~~~iv-HrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l  198 (432)
T 3p23_A          120 PITLLQQTTSGLAHLHSLNIV-HRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEML  198 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGT
T ss_pred             HHHHHHHHHHHHHHHHHCcCE-eCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhh
Confidence            578999999999999999998 999999999994     334688999999876543221 1223456789999999999


Q ss_pred             cCCCCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCC
Q psy1840          99 RQPHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELR  177 (423)
Q Consensus        99 ~~~~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R  177 (423)
                      .+......+.++|||||||++|||++ |..||.....  .. ...+...............+..+.+++.+||+.||.+|
T Consensus       199 ~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  275 (432)
T 3p23_A          199 SEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ--RQ-ANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKR  275 (432)
T ss_dssp             SCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT--HH-HHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGS
T ss_pred             hcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH--HH-HHHHhccCCccccCccccccHHHHHHHHHHHhCCHhhC
Confidence            85432244789999999999999999 8899964321  22 22222222222212223456678999999999999999


Q ss_pred             CCHHHHHH
Q psy1840         178 PDLRFVHH  185 (423)
Q Consensus       178 Pt~~~I~~  185 (423)
                      ||+.+|++
T Consensus       276 ps~~evl~  283 (432)
T 3p23_A          276 PSAKHVLK  283 (432)
T ss_dssp             CCHHHHHT
T ss_pred             CCHHHHHh
Confidence            99999975

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.92  E-value=1.9e-25  Score=213.54  Aligned_cols=154  Identities=22%  Similarity=0.330  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++. ++.+||+|||++........  ......+++.|+|||.+.+...
T Consensus       124 ~~~~~~qi~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  200 (295)
T 2clq_A          124 IGFYTKQILEGLKYLHDNQIV-HRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP--CTETFTGTLQYMAPEIIDKGPR  200 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEETTTCCEEECCTTTCEESCC-------CCCCCCGGGCCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-ccCCChhhEEEECCCCCEEEeecccccccCCCCC--cccccCCCccccChhhhcCCCC
Confidence            467899999999999999988 9999999999987 89999999999876543221  1234568899999999876431


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                       ..+.++||||||+++|+|++|..||.................  ..+.. +..+++++.+++.+||+.||++||++.++
T Consensus       201 -~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~li~~~l~~dp~~Rps~~~l  276 (295)
T 2clq_A          201 -GYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFK--VHPEI-PESMSAEAKAFILKCFEPDPDKRACANDL  276 (295)
T ss_dssp             -GCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHC--CCCCC-CTTSCHHHHHHHHHTTCSSTTTSCCHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccc--ccccc-cccCCHHHHHHHHHHccCChhhCCCHHHH
Confidence             237899999999999999999999964332222222221111  12222 23678999999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       277 l~  278 (295)
T 2clq_A          277 LV  278 (295)
T ss_dssp             HT
T ss_pred             hc
Confidence            75

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.92  E-value=2.9e-25  Score=212.41  Aligned_cols=156  Identities=22%  Similarity=0.290  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc------------ccccccccCCcc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE------------TGQERKLRRRKL   91 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~------------~~~~~~~~gt~~   91 (423)
                      ....++.|++.||.|||++|++ ||||||+||+++.++.+||+|||++........            ........+++.
T Consensus       117 ~~~~i~~qi~~~l~~LH~~~i~-H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (303)
T 1zy4_A          117 EYWRLFRQILEALSYIHSQGII-HRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAM  195 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CT
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-cccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCccc
Confidence            3578999999999999999998 999999999999999999999999876432210            111234568889


Q ss_pred             ccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhh
Q psy1840          92 YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWE  171 (423)
Q Consensus        92 y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~  171 (423)
                      |+|||.+.+..  .++.++|||||||++|||++   ||.. .....++...+.......|.......+..+.+++.+||+
T Consensus       196 y~aPE~~~~~~--~~~~~~Di~slG~il~~l~~---p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  269 (303)
T 1zy4_A          196 YVATEVLDGTG--HYNEKIDMYSLGIIFFEMIY---PFST-GMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLID  269 (303)
T ss_dssp             TSCHHHHTSCS--CCCTHHHHHHHHHHHHHHHS---CCSS-HHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTC
T ss_pred             ccCcccccCCC--CCcchhhHHHHHHHHHHHHh---ccCC-chhHHHHHHhccccccccCccccccchHHHHHHHHHHHh
Confidence            99999987642  24899999999999999998   5532 122344555555544444444445678899999999999


Q ss_pred             cCCCCCCCHHHHHHH
Q psy1840         172 EDPELRPDLRFVHHK  186 (423)
Q Consensus       172 ~dP~~RPt~~~I~~~  186 (423)
                      .||.+|||+.++++.
T Consensus       270 ~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          270 HDPNKRPGARTLLNS  284 (303)
T ss_dssp             SSGGGSCCHHHHHHS
T ss_pred             cCcccCcCHHHHhCC
Confidence            999999999999863

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.92  E-value=2e-25  Score=217.20  Aligned_cols=157  Identities=18%  Similarity=0.200  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++ .+||+|||+++.......   .....++..|+|||.+.+..
T Consensus       131 ~~~~~~~qi~~~l~~lH~~~iv-H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~~~~y~aPE~~~~~~  206 (330)
T 3nsz_A          131 DIRFYMYEILKALDYCHSMGIM-HRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELLVDYQ  206 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCSCCSCGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-eCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc---cccccccccccChhhhcCCC
Confidence            3678999999999999999988 999999999999776 899999999876543322   23456888999999987633


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHH------------HHHhcCCCC--------------------C
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEII------------TSVTQGSGL--------------------R  150 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~------------~~i~~~~~~--------------------~  150 (423)
                        .++.++|||||||++|||++|..||.........+.            ..+......                    .
T Consensus       207 --~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (330)
T 3nsz_A          207 --MYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFV  284 (330)
T ss_dssp             --CCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGC
T ss_pred             --cCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhc
Confidence              248999999999999999999999954322222111            111111100                    0


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       151 p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +......+++++.+++.+||+.||.+|||+.++++.
T Consensus       285 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          285 HSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             CTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             cccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            011112368899999999999999999999999763

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.92  E-value=8.8e-26  Score=224.75  Aligned_cols=152  Identities=19%  Similarity=0.205  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCc------------------------------------------
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRW------------------------------------------   61 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~------------------------------------------   61 (423)
                      ...++.||+.||.|||++ |++ ||||||+|||++.++                                          
T Consensus       148 ~~~i~~qi~~aL~~lH~~~giv-HrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (397)
T 1wak_A          148 VKKIIQQVLQGLDYLHTKCRII-HTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLE  226 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEE-CCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTS
T ss_pred             HHHHHHHHHHHHHHHHHhCCEe-cCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccc
Confidence            679999999999999998 888 999999999999775                                          


Q ss_pred             -------cEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q psy1840          62 -------VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM  134 (423)
Q Consensus        62 -------~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~  134 (423)
                             .+||+|||++......     .....||+.|+|||++.+..+   +.++|||||||++|||++|..||.....
T Consensus       227 ~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~---~~~~DiwslG~il~elltg~~pf~~~~~  298 (397)
T 1wak_A          227 PKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVLIGSGY---NTPADIWSTACMAFELATGDYLFEPHSG  298 (397)
T ss_dssp             GGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHHHTSCC---CTHHHHHHHHHHHHHHHHSSCSCCCCCC
T ss_pred             cccccccceEecccccccccccc-----CccCCCCCcccCChhhcCCCC---CcHHHHHHHHHHHHHHhhCCCCCCCCcc
Confidence                   7999999998765322     234568999999999988665   8999999999999999999999965322


Q ss_pred             C----hHHHHHHHhcCCCCCC------------------------C--------------CCCCCchHHHHHHHHHhhhc
Q psy1840         135 T----DEEIITSVTQGSGLRP------------------------D--------------TSSLDCAPSIIACMRTCWEE  172 (423)
Q Consensus       135 ~----~~~i~~~i~~~~~~~p------------------------~--------------~~~~~~~~~l~~Li~~C~~~  172 (423)
                      .    ....+..+.......|                        .              ......+..+.+|+.+||+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  378 (397)
T 1wak_A          299 EEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLEL  378 (397)
T ss_dssp             SSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCS
T ss_pred             cccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhcc
Confidence            1    1122222111000000                        0              00123456789999999999


Q ss_pred             CCCCCCCHHHHHH
Q psy1840         173 DPELRPDLRFVHH  185 (423)
Q Consensus       173 dP~~RPt~~~I~~  185 (423)
                      ||++|||+.++++
T Consensus       379 dP~~Rpt~~e~l~  391 (397)
T 1wak_A          379 IPEKRATAAECLR  391 (397)
T ss_dssp             SGGGSCCHHHHHT
T ss_pred             ChhhcCCHHHHhh
Confidence            9999999999875

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.92  E-value=1.8e-25  Score=221.22  Aligned_cols=158  Identities=16%  Similarity=0.241  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++......... .......||+.|+|||++.+..
T Consensus       129 ~~~~i~~qi~~aL~~LH~~~iv-H~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  207 (364)
T 3qyz_A          129 HICYFLYQILRGLKYIHSANVL-HRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSK  207 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBC
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCC
Confidence            3678999999999999999988 9999999999999999999999998765432211 1124457899999999876543


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------------CCCCCCC----CC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------------SGLRPDT----SS  155 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------------~~~~p~~----~~  155 (423)
                        .++.++|||||||++|||++|+.||....  ..+.+..+...                       .+.....    ..
T Consensus       208 --~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (364)
T 3qyz_A          208 --GYTKSIDIWSVGCILAEMLSNRPIFPGKH--YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLF  283 (364)
T ss_dssp             --SCSTHHHHHHHHHHHHHHHHSSCSSCCSS--GGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHC
T ss_pred             --CCCcchhHHHHHHHHHHHHHCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhC
Confidence              23899999999999999999999997532  22222222110                       0000000    01


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ..+++++.+++.+||+.||++|||+.++++.
T Consensus       284 ~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          284 PNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             TTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            3567899999999999999999999998763

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.92  E-value=1.1e-25  Score=216.02  Aligned_cols=157  Identities=18%  Similarity=0.271  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC--
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP--  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~--  101 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++......  ........+++.|+|||.+...  
T Consensus       118 ~~~~~~~~i~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~  194 (302)
T 2j7t_A          118 QIQVVCRQMLEALNFLHSKRII-HRDLKAGNVLMTLEGDIRLADFGVSAKNLKT--LQKRDSFIGTPYWMAPEVVMCETM  194 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCSGGGEEECTTSCEEECCCHHHHHHHHH--HHC-----CCGGGCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCcc-cCCCCHHHEEECCCCCEEEEECCCCcccccc--ccccccccCChhhcCCeeeccccC
Confidence            3679999999999999999998 9999999999999999999999986532111  1111345688899999998411  


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .....+.++||||||+++|+|++|..||..  .........+........ .....++..+.+++.+||+.||++|||+.
T Consensus       195 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~  271 (302)
T 2j7t_A          195 KDTPYDYKADIWSLGITLIEMAQIEPPHHE--LNPMRVLLKIAKSDPPTL-LTPSKWSVEFRDFLKIALDKNPETRPSAA  271 (302)
T ss_dssp             TSTTTTTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCCCC-SSGGGSCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred             CCCCCchhhhHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHHhccCCccc-CCccccCHHHHHHHHHHcccChhhCCCHH
Confidence            011238899999999999999999999974  344455555544332211 12345788999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       272 ~ll~h  276 (302)
T 2j7t_A          272 QLLEH  276 (302)
T ss_dssp             HHTTS
T ss_pred             HHhcC
Confidence            98763

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.92  E-value=1.3e-25  Score=226.38  Aligned_cols=155  Identities=15%  Similarity=0.134  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC---
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP---  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~---  101 (423)
                      ...++.||+.||+|||+.|++ ||||||+|||++.++.+||+|||+++....... .......||+.|+|||++...   
T Consensus       164 ~~~~~~qi~~aL~~LH~~gii-HrDLKp~NILld~~g~vkL~DFGla~~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~  241 (412)
T 2vd5_A          164 ARFYLAEIVMAIDSVHRLGYV-HRDIKPDNILLDRCGHIRLADFGSCLKLRADGT-VRSLVAVGTPDYLSPEILQAVGGG  241 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECCTTSC-EECSSCCSCGGGCCHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecccCHHHeeecCCCCEEEeechhheeccCCCc-cccceeccccCcCCHHHHhhcccC
Confidence            567899999999999999988 999999999999999999999999876543221 122346799999999999731   


Q ss_pred             -CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchHHHHHHHHHhhhcCCCCC-
Q psy1840         102 -HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS--GLRPDTSSLDCAPSIIACMRTCWEEDPELR-  177 (423)
Q Consensus       102 -~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~--~~~p~~~~~~~~~~l~~Li~~C~~~dP~~R-  177 (423)
                       ....++.++|||||||++|||++|+.||..  .+..+....+....  ...|. ....+++++.++|++||. +|.+| 
T Consensus       242 ~~~~~~~~~~DiwSlGvilyelltG~~Pf~~--~~~~~~~~~i~~~~~~~~~p~-~~~~~s~~~~dli~~lL~-~p~~Rl  317 (412)
T 2vd5_A          242 PGTGSYGPECDWWALGVFAYEMFYGQTPFYA--DSTAETYGKIVHYKEHLSLPL-VDEGVPEEARDFIQRLLC-PPETRL  317 (412)
T ss_dssp             TTCSEECTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHCCCC-----CCCHHHHHHHHTTSS-CGGGCT
T ss_pred             cCCCCCChHHhhhHHhHHHHHHHhCCCCCCC--CCHHHHHHHHHhcccCcCCCc-cccCCCHHHHHHHHHHcC-ChhhcC
Confidence             011238999999999999999999999974  44556666655321  11222 123688999999999999 99998 


Q ss_pred             --CCHHHHHH
Q psy1840         178 --PDLRFVHH  185 (423)
Q Consensus       178 --Pt~~~I~~  185 (423)
                        |++.+|++
T Consensus       318 gr~~~~ei~~  327 (412)
T 2vd5_A          318 GRGGAGDFRT  327 (412)
T ss_dssp             TTTTHHHHHT
T ss_pred             CCCCHHHHhc
Confidence              58888764

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.92  E-value=4.3e-25  Score=216.34  Aligned_cols=155  Identities=16%  Similarity=0.215  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.||+.||.|||+ .|++ ||||||+||+++.++.+||+|||++......    ......++..|+|||.+.+..
T Consensus       152 ~~~~i~~qi~~~l~~lH~~~~i~-H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~  226 (348)
T 2pml_X          152 VIKCIIKSVLNSFSYIHNEKNIC-HRDVKPSNILMDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNES  226 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCEE-CCCCCGGGEEECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCC
T ss_pred             HHHHHHHHHHHHHHHHhccCCEe-ecCCChHhEEEcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCC
Confidence            368999999999999999 8988 9999999999999999999999998765332    223457889999999998752


Q ss_pred             CCCCCC-ccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCC---------------CCCchHHHHHHH
Q psy1840         103 LPRGTQ-KGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS---------------SLDCAPSIIACM  166 (423)
Q Consensus       103 ~~~~s~-ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~---------------~~~~~~~l~~Li  166 (423)
                        .++. ++||||||+++|||++|..||.... ...++...+..+....|...               ...++.++.+++
T Consensus       227 --~~~~~~~Di~slG~il~~l~~g~~pf~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  303 (348)
T 2pml_X          227 --SYNGAKVDIWSLGICLYVMFYNVVPFSLKI-SLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFL  303 (348)
T ss_dssp             --CEEHHHHHHHHHHHHHHHHHHSSCSSCCSS-CSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHH
T ss_pred             --CCCcchhhHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHH
Confidence              1144 9999999999999999999997532 22566777766543333110               145789999999


Q ss_pred             HHhhhcCCCCCCCHHHHHHH
Q psy1840         167 RTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       167 ~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .+||+.||.+||++.++++.
T Consensus       304 ~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          304 KLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             HHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHccCChhhCCCHHHHhcC
Confidence            99999999999999999763

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.92  E-value=7.6e-26  Score=219.82  Aligned_cols=157  Identities=20%  Similarity=0.242  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc---EEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV---LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~---vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.||+.||.|||++|++ ||||||+||+++.++.   +||+|||++.......   ......|++.|+|||.+.+.
T Consensus       116 ~~~~~~qi~~~l~~lH~~~iv-H~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~  191 (322)
T 2ycf_A          116 CKLYFYQMLLAVQYLHENGII-HRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS---LMRTLCGTPTYLAPEVLVSV  191 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCH---HHHHHHSCCTTCCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ccCCCHHHEEEecCCCCCeEEEccCccceeccccc---ccccccCCcCccCchhhccC
Confidence            578999999999999999988 9999999999987654   9999999987653221   12345688999999997532


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      ....++.++|||||||++|+|++|..||...... ..+...+..+....+......++..+.+++.+||+.||++||++.
T Consensus       192 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~  270 (322)
T 2ycf_A          192 GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-VSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE  270 (322)
T ss_dssp             TTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS-SCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH-HHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHH
Confidence            1123488999999999999999999999753221 223344444332222111235788999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       271 ~~l~h  275 (322)
T 2ycf_A          271 EALRH  275 (322)
T ss_dssp             HHHTS
T ss_pred             HHhhC
Confidence            98763

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.92  E-value=7.4e-25  Score=215.66  Aligned_cols=152  Identities=17%  Similarity=0.205  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.++.+||+|||++......     .....+++.|+|||.+.+.. 
T Consensus       127 ~~~~i~~qi~~al~~LH~~~iv-H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~-  199 (353)
T 3coi_A          127 KIQYLVYQMLKGLKYIHSAGVV-HRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRWYRAPEVILSWM-  199 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSSCCGGGEEECTTCCEEECSTTCTTC-------------CCSBCCSCHHHHSCCS-
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-cCCCCHHHEeECCCCcEEEeecccccCCCCC-----ccccccCcCcCCHHHHhCcC-
Confidence            3678999999999999999998 9999999999999999999999998754322     23456788999999987632 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------------CC--CCC--CCCCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------------SG--LRP--DTSSL  156 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------------~~--~~p--~~~~~  156 (423)
                       .++.++|||||||++|+|++|..||...  +..+.+..+...                       .+  .++  .....
T Consensus       200 -~~~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T 3coi_A          200 -HYNQTVDIWSVGCIMAEMLTGKTLFKGK--DYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFP  276 (353)
T ss_dssp             -CCCTTHHHHHHHHHHHHHHHSSCSSBSS--CHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCT
T ss_pred             -CCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcC
Confidence             2489999999999999999999999753  222322222110                       00  011  11123


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .+++.+.+++.+||+.||++|||+.++++
T Consensus       277 ~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          277 RASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             TSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            57899999999999999999999999875

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.92  E-value=3.5e-25  Score=211.47  Aligned_cols=154  Identities=22%  Similarity=0.310  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCC---ccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~---~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      .....++.||+.||.|||+.|++ ||||||+||+++.+   +.+||+|||++........   .....+++.|+|||.+.
T Consensus       121 ~~~~~i~~qi~~~l~~LH~~~i~-H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~  196 (287)
T 2wei_A          121 HDAARIIKQVFSGITYMHKHNIV-HRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVLR  196 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSS---CSCHHHHHTTCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCee-ccCCChhhEEEecCCCcccEEEeccCcceeecCCCc---cccccCcccccChHHhc
Confidence            34689999999999999999998 99999999999754   4799999999876533221   12335778899999987


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +.    .+.++||||||+++|+|++|..||..  ....++...+..+....+......+++++.+++.+||+.||++|||
T Consensus       197 ~~----~~~~~Di~slG~~l~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps  270 (287)
T 2wei_A          197 GT----YDEKCDVWSAGVILYILLSGTPPFYG--KNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRIT  270 (287)
T ss_dssp             TC----CCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             CC----CCCchhhHhHHHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcC
Confidence            64    38999999999999999999999974  4456677777665433322222467899999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       271 ~~ell~h  277 (287)
T 2wei_A          271 ATQCLEH  277 (287)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhcC
Confidence            9999873

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.92  E-value=2.5e-25  Score=221.01  Aligned_cols=153  Identities=17%  Similarity=0.221  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||+++.....     .....+|+.|+|||.+.+.. 
T Consensus       145 ~~~~i~~qi~~aL~~LH~~~iv-H~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~-  217 (371)
T 4exu_A          145 KIQYLVYQMLKGLKYIHSAGVV-HRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRWYRAPEVILSWM-  217 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTCCEEECSTTCC-------------CTTCCCTTSCHHHHSCCS-
T ss_pred             HHHHHHHHHHHHHHHHHHCCCc-CCCcCHHHeEECCCCCEEEEecCcccccccC-----cCCcccCccccCHHHhcCCC-
Confidence            3678999999999999999998 9999999999999999999999998754322     23456789999999987632 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC-----------------------CCCCCC----CCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS-----------------------GLRPDT----SSL  156 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~-----------------------~~~p~~----~~~  156 (423)
                       .++.++|||||||++|+|++|..||...  ...+.+..+....                       ...+..    ...
T Consensus       218 -~~~~~~DiwslG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (371)
T 4exu_A          218 -HYNQTVDIWSVGCIMAEMLTGKTLFKGK--DYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFP  294 (371)
T ss_dssp             -CCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHST
T ss_pred             -CCCcHHhHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhcc
Confidence             2489999999999999999999999743  2333333322100                       000000    012


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      .+++.+.+++.+||+.||++|||+.++++.
T Consensus       295 ~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          295 RASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             TSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             ccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence            468899999999999999999999998753

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.92  E-value=2.7e-25  Score=231.98  Aligned_cols=150  Identities=23%  Similarity=0.325  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++......   ......||+.|+|||++.+..+ 
T Consensus       288 ~~~i~~qIl~aL~yLH~~gIv-HrDLKPeNILld~~g~vKL~DFGla~~~~~~~---~~~~~~GT~~Y~APEvl~~~~~-  362 (576)
T 2acx_A          288 AVFYAAEICCGLEDLHRERIV-YRDLKPENILLDDHGHIRISDLGLAVHVPEGQ---TIKGRVGTVGYMAPEVVKNERY-  362 (576)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTSCEEECCCTTCEECCTTC---CEECCCSCGGGCCHHHHTTCEE-
T ss_pred             HHHHHHHHHHHHHHHHHCCEe-ccCCchheEEEeCCCCeEEEecccceecccCc---cccccCCCccccCHHHHcCCCC-
Confidence            578999999999999999988 99999999999999999999999987654322   1234579999999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP----  178 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP----  178 (423)
                        +.++|||||||++|||++|..||....  ....++...+.......|    ..+++++.+++.+||+.||.+||    
T Consensus       363 --~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p----~~~s~~~~dLI~~lL~~dP~~R~g~~~  436 (576)
T 2acx_A          363 --TFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYS----ERFSPQARSLCSQLLCKDPAERLGCRG  436 (576)
T ss_dssp             --SSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSSGGGSTTCSS
T ss_pred             --CccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCC----ccCCHHHHHHHHHhccCCHHHcCCCCC
Confidence              899999999999999999999997542  234556666655433222    35789999999999999999999    


Q ss_pred             -CHHHHHH
Q psy1840         179 -DLRFVHH  185 (423)
Q Consensus       179 -t~~~I~~  185 (423)
                       ++.+|++
T Consensus       437 ~sa~eil~  444 (576)
T 2acx_A          437 GSAREVKE  444 (576)
T ss_dssp             SHHHHHHT
T ss_pred             CCHHHHHh
Confidence             6777765

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.92  E-value=1.3e-25  Score=224.91  Aligned_cols=164  Identities=19%  Similarity=0.271  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEE----cCCccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLI----DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILl----d~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.||+.||.|||+.|++ ||||||+||++    +.++.+||+|||+++......   ......|++.|+|||++.+
T Consensus       114 ~~~i~~qi~~aL~~LH~~~iv-H~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~  189 (396)
T 4eut_A          114 FLIVLRDVVGGMNHLRENGIV-HRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE---QFVSLYGTEEYLHPDMYER  189 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGG---GSSCSSSCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-ECCcCHHHEEEeecCCCceeEEEecCCCceEccCCC---ccccccCCccccCHHHhhc
Confidence            689999999999999999988 99999999999    888899999999987654322   2234578999999999864


Q ss_pred             CCC-----CCCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCC-------------------CC--
Q psy1840         101 PHL-----PRGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLR-------------------PD--  152 (423)
Q Consensus       101 ~~~-----~~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~-------------------p~--  152 (423)
                      ...     ..++.++|||||||++|||++|+.||....  ....+++..+..+.+..                   |.  
T Consensus       190 ~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  269 (396)
T 4eut_A          190 AVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSC  269 (396)
T ss_dssp             HCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTC
T ss_pred             cccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCccc
Confidence            210     022789999999999999999999996432  23355566655443211                   00  


Q ss_pred             CCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhh
Q psy1840         153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNA  192 (423)
Q Consensus       153 ~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~  192 (423)
                      .....++..+.+++.+||+.||++||++.++++.+..+..
T Consensus       270 ~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~  309 (396)
T 4eut_A          270 SLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (396)
T ss_dssp             SSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred             ccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence            0112356788999999999999999999999888877654

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.92  E-value=1.6e-25  Score=214.63  Aligned_cols=158  Identities=22%  Similarity=0.331  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc---ccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE---TGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~---~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........   ........+++.|+|||.+.+
T Consensus       122 ~~~~i~~qi~~~l~~lH~~~i~-H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  200 (303)
T 2vwi_A          122 TIATILREVLEGLEYLHKNGQI-HRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQ  200 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC-CCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhcc
Confidence            3689999999999999999998 999999999999999999999999875432211   111234568899999999865


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCC-C-----CCCCCCchHHHHHHHHHhhhcCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR-P-----DTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~-p-----~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      ..  ..+.++||||||+++|||++|..||.....  .............. +     ......++.++.+++.+||+.||
T Consensus       201 ~~--~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp  276 (303)
T 2vwi_A          201 VR--GYDFKADIWSFGITAIELATGAAPYHKYPP--MKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDP  276 (303)
T ss_dssp             HH--CCCTHHHHHHHHHHHHHHHHSSCTTTTSCG--GGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSG
T ss_pred             cc--CCCchhhHHHHHHHHHHHHhCCCCCccCch--hhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCCh
Confidence            22  238899999999999999999999975432  22222222221111 1     11124678899999999999999


Q ss_pred             CCCCCHHHHHHH
Q psy1840         175 ELRPDLRFVHHK  186 (423)
Q Consensus       175 ~~RPt~~~I~~~  186 (423)
                      .+||++.++++.
T Consensus       277 ~~Rps~~~ll~h  288 (303)
T 2vwi_A          277 EKRPTAAELLRH  288 (303)
T ss_dssp             GGSCCHHHHHTS
T ss_pred             hhCcCHHHHhhC
Confidence            999999999763

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.92  E-value=5.8e-26  Score=221.63  Aligned_cols=155  Identities=21%  Similarity=0.270  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++........  ......+++.|+|||.+.+..  
T Consensus       126 ~~~~~~qi~~~l~~LH~~~iv-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~--  200 (331)
T 4aaa_A          126 VQKYLFQIINGIGFCHSHNII-HRDIKPENILVSQSGVVKLCDFGFARTLAAPGE--VYDDEVATRWYRAPELLVGDV--  200 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTSCEEECCCTTC--------------CCCCCTTCCHHHHTTCT--
T ss_pred             HHHHHHHHHHHHHHHHHCCEE-ccCcChheEEEcCCCcEEEEeCCCceeecCCcc--ccCCCcCCccccCcccccCCC--
Confidence            678999999999999999998 999999999999999999999999875433221  123456888999999997652  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-------------------CCCCCCCC--------CCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-------------------SGLRPDTS--------SLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-------------------~~~~p~~~--------~~~  157 (423)
                      .++.++|||||||++|+|++|..||...  ...+....+...                   ....+...        ...
T Consensus       201 ~~~~~~Di~slG~il~~l~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (331)
T 4aaa_A          201 KYGKAVDVWAIGCLVTEMFMGEPLFPGD--SDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPK  278 (331)
T ss_dssp             TCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTT
T ss_pred             CcchHHHHHHHHHHHHHHHhCCCCCCCC--CcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccc
Confidence            2388999999999999999999999743  223322222110                   00011100        125


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +++.+.+++.+||+.||++|||+.++++.
T Consensus       279 ~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          279 LSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             hhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            68899999999999999999999998764

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.92  E-value=1.4e-25  Score=227.77  Aligned_cols=157  Identities=16%  Similarity=0.168  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC--C
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP--H  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~--~  102 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++....... .......||+.|+|||++...  .
T Consensus       177 ~~~~~~qi~~aL~~LH~~gii-HrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~  254 (437)
T 4aw2_A          177 ARFYLAEMVIAIDSVHQLHYV-HRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT-VQSSVAVGTPDYISPEILQAMEGG  254 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECCTTSC-EECCSCCSCGGGCCHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHhCCeE-ecccCHHHeeEcCCCCEEEcchhhhhhcccCCC-cccccccCCcCeeChHHHhhcccC
Confidence            568899999999999999988 999999999999999999999999876543222 222346799999999998721  0


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCC--CCCCCCCCCCchHHHHHHHHHhhhcCCCC--CC
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGS--GLRPDTSSLDCAPSIIACMRTCWEEDPEL--RP  178 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~--~~~p~~~~~~~~~~l~~Li~~C~~~dP~~--RP  178 (423)
                      ...++.++|||||||++|||++|+.||..  .+..+....+....  ...|.. ...+++++.+||++||..+|+.  ||
T Consensus       255 ~~~~~~~~DvwSlGvil~elltG~~Pf~~--~~~~~~~~~i~~~~~~~~~p~~-~~~~s~~~~dLi~~lL~~~~~r~~r~  331 (437)
T 4aw2_A          255 KGRYGPECDWWSLGVCMYEMLYGETPFYA--ESLVETYGKIMNHKERFQFPTQ-VTDVSENAKDLIRRLICSREHRLGQN  331 (437)
T ss_dssp             CCEECTHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTHHHHCCCCSS-CCCSCHHHHHHHHTTSSCGGGCTTTT
T ss_pred             CCCCCCcCeeHHHHHHHHHHHhCCCCCCC--CChhHHHHhhhhccccccCCcc-cccCCHHHHHHHHHHhcccccccCCC
Confidence            11238999999999999999999999974  44556666664321  122222 2357899999999999888877  99


Q ss_pred             CHHHHHHH
Q psy1840         179 DLRFVHHK  186 (423)
Q Consensus       179 t~~~I~~~  186 (423)
                      ++.++++.
T Consensus       332 ~~~eil~H  339 (437)
T 4aw2_A          332 GIEDFKKH  339 (437)
T ss_dssp             TTHHHHTS
T ss_pred             CHHHHhCC
Confidence            99988753

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.92  E-value=3.2e-25  Score=217.69  Aligned_cols=157  Identities=22%  Similarity=0.261  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc--------ccccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG--------QERKLRRRKLYKAP   95 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~--------~~~~~~gt~~y~AP   95 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.++.+||+|||++..........        ......||+.|+||
T Consensus       113 ~~~~~~~qi~~~L~~LH~~~iv-H~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  191 (353)
T 2b9h_A          113 HIQYFIYQTLRAVKVLHGSNVI-HRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAP  191 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCH
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-cCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCC
Confidence            3678999999999999999988 99999999999999999999999987654222110        11234688999999


Q ss_pred             ccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc--CC----------------------CCCC
Q psy1840          96 ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ--GS----------------------GLRP  151 (423)
Q Consensus        96 E~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~--~~----------------------~~~p  151 (423)
                      |.+.+..  .++.++|||||||++|+|++|..||.+..  ..+....+..  +.                      ...+
T Consensus       192 E~~~~~~--~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
T 2b9h_A          192 EVMLTSA--KYSRAMDVWSCGCILAELFLRRPIFPGRD--YRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYP  267 (353)
T ss_dssp             HHHHSCC--CCCHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCC
T ss_pred             eeeccCC--CccchhhHHHHHHHHHHHHhCCCCCCCCC--cHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCC
Confidence            9876532  23899999999999999999999997532  2222222211  00                      0000


Q ss_pred             CCC----CCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         152 DTS----SLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       152 ~~~----~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ...    ...+++++.+++.+||+.||++|||+.++++
T Consensus       268 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          268 AAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             CCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            000    1357889999999999999999999999876

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.92  E-value=5.3e-25  Score=217.14  Aligned_cols=153  Identities=22%  Similarity=0.343  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.|++.||.|||+. |++ ||||||+||+++.++.+||+|||++......    ......|++.|+|||.+.+..+
T Consensus       133 ~~~i~~~i~~~l~~lh~~~~i~-H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~  207 (360)
T 3eqc_A          133 LGKVSIAVIKGLTYLREKHKIM-HRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MANSFVGTRSYMSPERLQGTHY  207 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCC-CSCCSGGGEEECTTCCEEECCCCCCHHHHHH----C----CCCCTTCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCEE-cCCccHHHEEECCCCCEEEEECCCCcccccc----cccCCCCCCCeECHHHHcCCCC
Confidence            578999999999999996 888 9999999999999999999999998654221    1234578899999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh----------------------------------------HHHHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD----------------------------------------EEIITSV  143 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~----------------------------------------~~i~~~i  143 (423)
                         +.++|||||||++|+|++|..||.......                                        .+....+
T Consensus       208 ---~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (360)
T 3eqc_A          208 ---SVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYI  284 (360)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------CCCHHHHHHHH
T ss_pred             ---CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHH
Confidence               899999999999999999999996432110                                        1112222


Q ss_pred             hcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q psy1840         144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKL  187 (423)
Q Consensus       144 ~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L  187 (423)
                      ....  .+......++.++.+++.+||+.||++|||+.++++.-
T Consensus       285 ~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  326 (360)
T 3eqc_A          285 VNEP--PPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHA  326 (360)
T ss_dssp             HHSC--CCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSH
T ss_pred             hccC--CCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhCh
Confidence            2221  22223345788999999999999999999999998753

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.92  E-value=1.8e-25  Score=221.03  Aligned_cols=154  Identities=20%  Similarity=0.267  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEc------CCccEEEeccCCcccccCCCcccccccccCCccccCCc
Q psy1840          24 GSISVNTTASVGMIHLHDS-EIISHGNLRSSNCLID------SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPE   96 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld------~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE   96 (423)
                      ....++.||+.||.|||++ |++ ||||||+||+++      ..+.+||+|||++......     .....+|+.|+|||
T Consensus       132 ~~~~i~~qi~~aL~~lH~~~~iv-H~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE  205 (373)
T 1q8y_A          132 YVKQISKQLLLGLDYMHRRCGII-HTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPE  205 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEE-CSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEE-ecCCChHHeEEeccCCCcCcceEEEcccccccccCCC-----CCCCCCCccccCcH
Confidence            3679999999999999998 988 999999999994      4458999999998765322     13346889999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC----ChHHHHHHHhcCCCCCC---------------------
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM----TDEEIITSVTQGSGLRP---------------------  151 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~----~~~~i~~~i~~~~~~~p---------------------  151 (423)
                      ++.+..+   +.++|||||||++|||++|..||.....    ...+.+..+.......|                     
T Consensus       206 ~~~~~~~---~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  282 (373)
T 1q8y_A          206 VLLGAPW---GCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLR  282 (373)
T ss_dssp             HHHTCCC---CTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBS
T ss_pred             HHhCCCC---CchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhc
Confidence            9987655   8999999999999999999999974321    11222222211000000                     


Q ss_pred             -----------------CCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         152 -----------------DTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       152 -----------------~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                                       ......++.++.+|+.+||+.||++|||+.++++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  334 (373)
T 1q8y_A          283 NISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH  334 (373)
T ss_dssp             SCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred             ccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhC
Confidence                             00112356789999999999999999999999763

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.92  E-value=4.6e-25  Score=209.38  Aligned_cols=146  Identities=16%  Similarity=0.241  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-------------------CccEEEeccCCcccccCCCcccccc
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-------------------RWVLQIADFGLHAFKAGQDETGQER   84 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-------------------~~~vKL~DFGla~~~~~~~~~~~~~   84 (423)
                      ....++.||+.||.|||++|++ ||||||+||+++.                   .+.+||+|||.+......      .
T Consensus       116 ~~~~i~~qi~~al~~lH~~~iv-H~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~------~  188 (289)
T 1x8b_A          116 ELKDLLLQVGRGLRYIHSMSLV-HMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP------Q  188 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCS------C
T ss_pred             HHHHHHHHHHHHHHHHHhCCEe-ecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCc------c
Confidence            3689999999999999999988 9999999999984                   448999999998765322      2


Q ss_pred             cccCCccccCCccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHH
Q psy1840          85 KLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIA  164 (423)
Q Consensus        85 ~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~  164 (423)
                      ...+++.|+|||.+.+..  ..+.++|||||||++|+|++|..|+..     ......+..+..  +.. +..+++++.+
T Consensus       189 ~~~gt~~y~aPE~~~~~~--~~~~~~Di~slG~il~~l~~~~~~~~~-----~~~~~~~~~~~~--~~~-~~~~~~~~~~  258 (289)
T 1x8b_A          189 VEEGDSRFLANEVLQENY--THLPKADIFALALTVVCAAGAEPLPRN-----GDQWHEIRQGRL--PRI-PQVLSQEFTE  258 (289)
T ss_dssp             CCCCCGGGCCHHHHTTCC--TTHHHHHHHHHHHHHHHHTTCCCCCSS-----SHHHHHHHTTCC--CCC-SSCCCHHHHH
T ss_pred             ccCCCccccChhHhcCCC--CCCchhhHHHHHHHHHHHhcCCCCCcc-----hhHHHHHHcCCC--CCC-CcccCHHHHH
Confidence            335888999999997653  236799999999999999999877642     122334444322  222 2367899999


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHH
Q psy1840         165 CMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       165 Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++.+||+.||++|||+.++++.
T Consensus       259 li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          259 LLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHTC
T ss_pred             HHHHHhCCCcccCCCHHHHhhC
Confidence            9999999999999999998763

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.91  E-value=1.1e-24  Score=215.03  Aligned_cols=155  Identities=19%  Similarity=0.248  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++.++.+||+|||++.......   ......+++.|+|||.+.+.. 
T Consensus       135 ~~~~~~~qi~~~l~~lH~~~iv-H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~-  209 (362)
T 3pg1_A          135 HIQYFMYHILLGLHVLHEAGVV-HRDLHPGNILLADNNDITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFK-  209 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTCCEEECCTTC------------------CGGGCCHHHHTTCT-
T ss_pred             HHHHHHHHHHHHHHHHHHCcCE-ecCCChHHEEEcCCCCEEEEecCccccccccc---ccceecccceecCcHHhcCCC-
Confidence            3678999999999999999998 99999999999999999999999987433221   223456888999999987632 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc------------------------CCCCCCCC----CC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ------------------------GSGLRPDT----SS  155 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~------------------------~~~~~p~~----~~  155 (423)
                       ..+.++|||||||++|+|++|+.||...  ...+....+..                        .....+..    ..
T Consensus       210 -~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (362)
T 3pg1_A          210 -GFTKLVDMWSAGCVMAEMFNRKALFRGS--TFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVV  286 (362)
T ss_dssp             -TCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHS
T ss_pred             -CCCcHhHHHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhC
Confidence             2389999999999999999999999753  23333333221                        00000100    01


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ..+++.+.+++.+||+.||++|||+.++++.
T Consensus       287 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  317 (362)
T 3pg1_A          287 PTADPVALDLIAKMLEFNPQRRISTEQALRH  317 (362)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence            3467889999999999999999999998763

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.91  E-value=3.4e-25  Score=213.84  Aligned_cols=158  Identities=18%  Similarity=0.252  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCc-ccccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++ .++.+||+|||++........ ........++..|+|||.+.+.
T Consensus       121 ~~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  199 (320)
T 2i6l_A          121 HARLFMYQLLRGLKYIHSANVL-HRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSP  199 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCB-CCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHhCCEe-cCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCc
Confidence            3678999999999999999998 999999999997 567999999999876532211 1122344578889999988653


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCC----------------------CCCC----CC
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL----------------------RPDT----SS  155 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~----------------------~p~~----~~  155 (423)
                      .  ..+.++||||||+++|||++|+.||...  ...+....+....+.                      .+..    ..
T Consensus       200 ~--~~~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (320)
T 2i6l_A          200 N--NYTKAIDMWAAGCIFAEMLTGKTLFAGA--HELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLL  275 (320)
T ss_dssp             T--CCCHHHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHS
T ss_pred             c--cCCchhhhHhHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhc
Confidence            2  2389999999999999999999999743  333333333221110                      0100    01


Q ss_pred             CCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         156 LDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       156 ~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ..++.++.+++.+||+.||++|||+.++++.
T Consensus       276 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          276 PGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             TTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             chhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            3578999999999999999999999999763

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.91  E-value=5.1e-25  Score=214.11  Aligned_cols=143  Identities=24%  Similarity=0.411  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.||+.||.|||+.|++ ||||||+||+++ .++.+||+|||++.......    .....|++.|+|||.+.+..
T Consensus       150 ~~~~i~~qi~~~L~~LH~~~iv-H~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~  224 (320)
T 3a99_A          150 LARSFFWQVLEAVRHCHNCGVL-HRDIKDENILIDLNRGELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWIRYHR  224 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEETTTTEEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHCCcE-eCCCCHHHEEEeCCCCCEEEeeCcccccccccc----ccCCCCCccCCChHHhccCC
Confidence            3678999999999999999988 999999999999 78999999999987654321    23456889999999987654


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      .  .+.++||||||+++|||++|+.||..    ..+    +..+...    ....+++++.+++.+||+.||++|||+.+
T Consensus       225 ~--~~~~~Di~slG~il~el~~g~~pf~~----~~~----~~~~~~~----~~~~~~~~~~~li~~~l~~dp~~Rps~~~  290 (320)
T 3a99_A          225 Y--HGRSAAVWSLGILLYDMVCGDIPFEH----DEE----IIRGQVF----FRQRVSSECQHLIRWCLALRPSDRPTFEE  290 (320)
T ss_dssp             B--CHHHHHHHHHHHHHHHHHHSSCSCCS----HHH----HHHCCCC----CSSCCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             C--CCccchHHhHHHHHHHHHHCCCCCCC----hhh----hhccccc----ccccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            2  26789999999999999999999963    122    1222211    12357899999999999999999999999


Q ss_pred             HHH
Q psy1840         183 VHH  185 (423)
Q Consensus       183 I~~  185 (423)
                      |++
T Consensus       291 ll~  293 (320)
T 3a99_A          291 IQN  293 (320)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            876

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.90  E-value=5.2e-24  Score=205.61  Aligned_cols=143  Identities=23%  Similarity=0.431  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||+.|++ ||||||+||+++ .++.+||+|||++.......    .....++..|+|||.+.+...
T Consensus       141 ~~~~~~qi~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~  215 (312)
T 2iwi_A          141 SRCFFGQVVAAIQHCHSRGVV-HRDIKDENILIDLRRGCAKLIDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQY  215 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHTEE-CCCCSGGGEEEETTTTEEEECCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCB
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecCCChhhEEEeCCCCeEEEEEcchhhhcccCc----ccccCCcccccCceeeecCCC
Confidence            678999999999999999988 999999999999 88999999999987654322    234568889999999876543


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        .+.++||||||+++|||++|+.||..    ..++.    ......    ...++..+.+++.+||+.||++||++.++
T Consensus       216 --~~~~~Di~slG~il~~l~~g~~pf~~----~~~~~----~~~~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~e~  281 (312)
T 2iwi_A          216 --HALPATVWSLGILLYDMVCGDIPFER----DQEIL----EAELHF----PAHVSPDCCALIRRCLAPKPSSRPSLEEI  281 (312)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHSSCSCCS----HHHHH----HTCCCC----CTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             --CCccchHHHHHHHHHHHHHCCCCCCC----hHHHh----hhccCC----cccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence              24589999999999999999999963    12222    221111    23578999999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       282 l~~  284 (312)
T 2iwi_A          282 LLD  284 (312)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            763

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.89  E-value=2.7e-23  Score=199.79  Aligned_cols=136  Identities=17%  Similarity=0.258  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC---CccEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS---RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~---~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ....++.|++.||.|||+.|++ ||||||+||+++.   ++.+||+|||++.....                        
T Consensus       118 ~~~~i~~qi~~~l~~lH~~~i~-H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~------------------------  172 (299)
T 3m2w_A          118 EASEIMKSIGEAIQYLHSINIA-HRDVKPENLLYTSKRPNAILKLTDFGFAKETTG------------------------  172 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEESSSSTTCCEEECCCTTCEECTT------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-cCCCCHHHEEEecCCCCCcEEEecccccccccc------------------------
Confidence            3689999999999999999988 9999999999998   78999999999754321                        


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc----CCCCCCCCCCCCchHHHHHHHHHhhhcCCCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ----GSGLRPDTSSLDCAPSIIACMRTCWEEDPEL  176 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~----~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~  176 (423)
                      ..   ++.++|||||||++|||++|..||.....  ......+..    +....+......+++++.+++.+||+.||++
T Consensus       173 ~~---~~~~~DiwslG~il~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~  247 (299)
T 3m2w_A          173 EK---YDKSCDMWSLGVIMYILLCGYPPFYSNHG--LAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQ  247 (299)
T ss_dssp             CG---GGGHHHHHHHHHHHHHHHHSSCSCCC---------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTT
T ss_pred             cc---CCchhhHHHHHHHHHHHHHCCCCCCCCcc--hhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhh
Confidence            11   27899999999999999999999964321  111111111    1111111111457899999999999999999


Q ss_pred             CCCHHHHHHHHHH
Q psy1840         177 RPDLRFVHHKLKE  189 (423)
Q Consensus       177 RPt~~~I~~~L~~  189 (423)
                      |||+.++++....
T Consensus       248 Rps~~e~l~hp~~  260 (299)
T 3m2w_A          248 RMTITEFMNHPWI  260 (299)
T ss_dssp             SCCHHHHHTSHHH
T ss_pred             CCCHHHHhcChhh
Confidence            9999999875433

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.88  E-value=9.6e-24  Score=223.00  Aligned_cols=152  Identities=20%  Similarity=0.179  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCcc---EEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWV---LQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~---vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.|++.||.|||+.|++ ||||||+||+++.++.   +||+|||++.......   ......|++.|+|||.+.+.
T Consensus       123 i~~I~~QLl~aL~yLHs~gIV-HrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~---~~~~~~gt~~Y~APE~l~~~  198 (676)
T 3qa8_A          123 IRTLLSDISSALRYLHENRII-HRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGE---LCTEFVGTLQYLAPELLEQK  198 (676)
T ss_dssp             HHHHHHHHHHHHHHHHHTTBC-CCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCC---CCCCCCSCCTTCSSCSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-cCCCCHHHeEeecCCCceeEEEccccccccccccc---ccccccCCcccCChHHhccC
Confidence            689999999999999999988 9999999999996654   9999999987654332   12345788999999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHH--------HHHh-----cCCC------CCCCCCCCCchHHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEII--------TSVT-----QGSG------LRPDTSSLDCAPSI  162 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~--------~~i~-----~~~~------~~p~~~~~~~~~~l  162 (423)
                      .+   +.++|||||||++|+|++|..||.... ....+.        ....     .+..      ..|......+++.+
T Consensus       199 ~~---s~ksDIwSLGviLyeLltG~~Pf~~~~-~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L  274 (676)
T 3qa8_A          199 KY---TVTVDYWSFGTLAFECITGFRPFLPNW-QPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKL  274 (676)
T ss_dssp             CC---STTHHHHHHHHHHHHHHSSCSSCCSSC-HHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHH
T ss_pred             CC---CchhHHHHHHHHHHHHHHCCCCCCccc-chhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHH
Confidence            55   899999999999999999999996421 011000        0000     0000      11111223478899


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHH
Q psy1840         163 IACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       163 ~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      .+++.+||..||++|||+.+++
T Consensus       275 ~dLI~~mL~~DP~kRPTa~elL  296 (676)
T 3qa8_A          275 ERWLQCMLMWHQRQRGTDPQNP  296 (676)
T ss_dssp             HHHHHHHSCSSCC---CCTTCC
T ss_pred             HHHHHHHccCCHhhCcCHHHHh
Confidence            9999999999999999987753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=1.8e-22  Score=215.92  Aligned_cols=143  Identities=20%  Similarity=0.228  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||++|++ ||||||+||+++.+ .+||+|||+++.....      ....||+.|+|||++.+.. 
T Consensus       183 ~~~~~~~qi~~aL~~lH~~gii-HrDlkp~NIll~~~-~~kl~DFG~a~~~~~~------~~~~gt~~y~aPE~~~~~~-  253 (681)
T 2pzi_A          183 EAIAYLLEILPALSYLHSIGLV-YNDLKPENIMLTEE-QLKLIDLGAVSRINSF------GYLYGTPGFQAPEIVRTGP-  253 (681)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECSS-CEEECCCTTCEETTCC------SCCCCCTTTSCTTHHHHCS-
T ss_pred             HHHHHHHHHHHHHHHHHHCCCe-ecccChHHeEEeCC-cEEEEecccchhcccC------CccCCCccccCHHHHcCCC-
Confidence            3689999999999999999988 99999999999985 8999999998765322      3456899999999987643 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-HHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-LRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-~~~  182 (423)
                         +.++|||||||++|+|++|..||......          .  ..........++.+.+++.+||+.||++||+ ..+
T Consensus       254 ---~~~sDi~slG~~l~~l~~g~~~~~~~~~~----------~--~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~  318 (681)
T 2pzi_A          254 ---TVATDIYTVGRTLAALTLDLPTRNGRYVD----------G--LPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEE  318 (681)
T ss_dssp             ---CHHHHHHHHHHHHHHHHSCCCEETTEECS----------S--CCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred             ---CCceehhhhHHHHHHHHhCCCCCcccccc----------c--ccccccccccCHHHHHHHhhhccCChhhCCCHHHH
Confidence               78999999999999999999888632110          0  0011111124578999999999999999995 566


Q ss_pred             HHHHHHHH
Q psy1840         183 VHHKLKEM  190 (423)
Q Consensus       183 I~~~L~~i  190 (423)
                      +.+.+..+
T Consensus       319 l~~~l~~~  326 (681)
T 2pzi_A          319 MSAQLTGV  326 (681)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655544

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.85  E-value=4.1e-22  Score=190.93  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          22 PIGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        22 p~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      +...+.++.|++.||.|||++|++ ||||||+||+++.++.+||+++|                      |++|      
T Consensus       128 ~~~~~~i~~ql~~aL~~lH~~giv-H~Dikp~NIll~~~g~~kl~~~~----------------------~~~~------  178 (286)
T 3uqc_A          128 PVGAIRAMQSLAAAADAAHRAGVA-LSIDHPSRVRVSIDGDVVLAYPA----------------------TMPD------  178 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCC-CCCCSGGGEEEETTSCEEECSCC----------------------CCTT------
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCc-cCCCCcccEEEcCCCCEEEEecc----------------------ccCC------
Confidence            455789999999999999999998 99999999999999999998543                      3332      


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHH--HHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI--ITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i--~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                          .+.++|||||||++|||++|+.||....... .+  ......+....+......+++++.+++.+||+.||++| |
T Consensus       179 ----~~~~~Di~slG~il~elltg~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s  252 (286)
T 3uqc_A          179 ----ANPQDDIRGIGASLYALLVNRWPLPEAGVRS-GLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-S  252 (286)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHSEECSCCCSBCC-CSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-C
T ss_pred             ----CCchhHHHHHHHHHHHHHHCCCCCCcCCcch-hhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-C
Confidence                2889999999999999999999997532110 00  00000111111111124678999999999999999999 9


Q ss_pred             HHHHHHHHHHHhhh
Q psy1840         180 LRFVHHKLKEMNAG  193 (423)
Q Consensus       180 ~~~I~~~L~~i~~~  193 (423)
                      +.++++.|+.+...
T Consensus       253 ~~el~~~L~~~~~~  266 (286)
T 3uqc_A          253 ASTLLNLMQQATAV  266 (286)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887653

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.82  E-value=1e-20  Score=184.79  Aligned_cols=143  Identities=11%  Similarity=0.073  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHH-hCCCeeecCCCCCCEEEcCCc--------------------cEEEeccCCcccccCCCcccc
Q psy1840          24 GSISVNTTASVGMIHLH-DSEIISHGNLRSSNCLIDSRW--------------------VLQIADFGLHAFKAGQDETGQ   82 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH-~~~ii~HrDLkp~NILld~~~--------------------~vKL~DFGla~~~~~~~~~~~   82 (423)
                      ....++.||+.||.||| +.|++ ||||||+|||++.++                    .+||+|||+++.....     
T Consensus       162 ~~~~i~~qi~~aL~~lH~~~~iv-HrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-----  235 (336)
T 2vuw_A          162 TAKSILHQLTASLAVAEASLRFE-HRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-----  235 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCB-CSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEe-ECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----
Confidence            36799999999999999 89998 999999999999887                    9999999999865422     


Q ss_pred             cccccCCccccCCccccCCCCCCCCCccchHHHHHH-HHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCC---CCCCc
Q psy1840          83 ERKLRRRKLYKAPELLRQPHLPRGTQKGDVYSFGLV-LYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT---SSLDC  158 (423)
Q Consensus        83 ~~~~~gt~~y~APE~l~~~~~~~~s~ksDVyS~Gii-l~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~---~~~~~  158 (423)
                        ...||+.|+|||++.+..    +.++||||+|++ .+++++|..||.... ....+...+..........   ....+
T Consensus       236 --~~~gt~~y~aPE~~~g~~----~~~~Diwsl~~~~~~~~~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (336)
T 2vuw_A          236 --IVVFCDVSMDEDLFTGDG----DYQFDIYRLMKKENNNRWGEYHPYSNVL-WLHYLTDKMLKQMTFKTKCNTPAMKQI  308 (336)
T ss_dssp             --EEECCCCTTCSGGGCCCS----SHHHHHHHHHHHHHTTCTTSCCTHHHHH-HHHHHHHHHHHTCCCSSCCCSHHHHHH
T ss_pred             --cEEEeecccChhhhcCCC----ccceehhhhhCCCCcccccccCCCcchh-hhhHHHHhhhhhhccCcccchhhhhhc
Confidence              347899999999998653    789999998776 777888999984210 0012233333221111111   11247


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      ++++.+|+.+||+.|     |+.+++
T Consensus       309 s~~~~dli~~~L~~d-----sa~e~l  329 (336)
T 2vuw_A          309 KRKIQEFHRTMLNFS-----SATDLL  329 (336)
T ss_dssp             HHHHHHHHHHGGGSS-----SHHHHH
T ss_pred             CHHHHHHHHHHhccC-----CHHHHH
Confidence            889999999999976     888776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.71  E-value=6.1e-19  Score=184.59  Aligned_cols=94  Identities=15%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCCC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLPR  105 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~  105 (423)
                      -+|+.||+.||+|+|++||| ||||||+|||++.+|.+||+|||+++......  .......||+.|+|||++.+..   
T Consensus       342 ~~I~~QIl~AL~ylH~~GII-HRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~--~~~~t~vGTp~YmAPE~l~g~~---  415 (569)
T 4azs_A          342 EKILGSLLRSLAALEKQGFW-HDDVRPWNVMVDARQHARLIDFGSIVTTPQDC--SWPTNLVQSFFVFVNELFAENK---  415 (569)
T ss_dssp             HHHHHHHHHHHHHHHHTTCE-ESCCCGGGEEECTTSCEEECCCTTEESCC-----CCSHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHCCce-eccCchHhEEECCCCCEEEeecccCeeCCCCC--ccccCceechhhccHHHhCCCC---
Confidence            46899999999999999998 99999999999999999999999988654322  2224567999999999998753   


Q ss_pred             CCCccchHHHHHHHHHHHhCC
Q psy1840         106 GTQKGDVYSFGLVLYEVIGRQ  126 (423)
Q Consensus       106 ~s~ksDVyS~Giil~elltg~  126 (423)
                       ..++|+||+|++++++.++.
T Consensus       416 -~~~~d~~s~g~~~~~l~~~~  435 (569)
T 4azs_A          416 -SWNGFWRSAPVHPFNLPQPW  435 (569)
T ss_dssp             --------------CCCCTTH
T ss_pred             -CCcccccccccchhhhcccc
Confidence             67899999999888765543

>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*

Probab=99.64  E-value=1.2e-16  Score=158.99  Aligned_cols=89  Identities=19%  Similarity=0.121  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHhhCc-------HHHHHHHhCCCCC------------CCccccceeEEEeeccccccccccCCHhHHH
Q psy1840         305 LTQEKKKTDALLHRMLP-------RSVSESLKRGDFV------------EPESFDSVTIYFSDIVGFTQLSAESTETGRV  365 (423)
Q Consensus       305 l~~e~~~~~~ll~~~lp-------~~ia~~l~~g~~~------------~~~~~~~vtv~f~di~gft~~~~~~~p~~~v  365 (423)
                      ..++++|+++||++|||       +.|+++|++|...            .+..|.+|||+||||+|||.+++.++|.+++
T Consensus       160 ~~ee~~kse~LL~~iLP~L~~~l~~~va~~L~~~~~~~~v~~~~r~~~~~~~~~~~vTVlFaDIvgFT~ls~~~~p~evv  239 (407)
T 1y10_A          160 ELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFTQLGEVVSAEELG  239 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCEEEEEEEEEECSBCTTSCBCCHHHHH
T ss_pred             cHhHHHHHHHHHHHhcccccccchHHHHHHHHhcccchhhhhhhhcccccccceeeEEEEEEEccCchHHHhhCCHHHHH
Confidence            35778999999999999       9999999988542            2346899999999999999999999999999


Q ss_pred             Hhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         366 TTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       366 ~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      .+||++|+ ||.+++ +++|+++|+||.||
T Consensus       240 ~lLn~~~~~~~~i~~-~~g~~iKtiGDa~m  268 (407)
T 1y10_A          240 HLAGRLAGLARDLTA-PPVWFIKTIGDAVM  268 (407)
T ss_dssp             HHHHHHHHHHHHHCC-TTCEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHH-cCcEEEEEecceEE
Confidence            99999999 998887 79999999999999

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.38  E-value=3.7e-14  Score=147.43  Aligned_cols=101  Identities=20%  Similarity=0.240  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-----ccccccCCccccCCccccC
Q psy1840          26 ISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-----QERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        26 l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-----~~~~~~gt~~y~APE~l~~  100 (423)
                      +.++.|++.||.|||+++++ ||||||+|||++.  .+||+|||+++.........     ......||+.|+|||++..
T Consensus       434 ~~i~~qi~~aL~~LH~~gIi-HrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~  510 (540)
T 3en9_A          434 LDIAYKIGEIVGKLHKNDVI-HNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWER  510 (540)
T ss_dssp             THHHHHHHHHHHHHHHTTEE-CTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCc-cCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHH
Confidence            58999999999999999988 9999999999999  99999999998764322111     1235678999999999976


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWG  130 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~  130 (423)
                      ... .++..+|+||.++-..+-+.++.+|.
T Consensus       511 ~~~-~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          511 FLE-GYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHH-HHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             HHH-HHHHHHhHHHHHHHHHHHHHhccccC
Confidence            211 12677899999999888888887774

>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}

Probab=99.35  E-value=1e-13  Score=127.83  Aligned_cols=84  Identities=27%  Similarity=0.404  Sum_probs=70.0

Q ss_pred             hCCCCCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC--------CcchH
Q psy1840         329 KRGDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR--------HRPHE  399 (423)
Q Consensus       329 ~~g~~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~--------~~~~~  399 (423)
                      ++|+.+.++++++|||+|+||+|||.+++.++|.+++.+||++|+ ||..|..++.|+++|+||.||        +..|+
T Consensus         2 ~~g~~~~~~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~fg~p~~~~~~a   81 (225)
T 3uvj_A            2 MQGQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDTHA   81 (225)
T ss_dssp             ---CEEEEEEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEESSSSCCTTHH
T ss_pred             CCCCccCCcccceEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEECCCCCchHHH
Confidence            468889999999999999999999999999999999999999999 999999999999999999988        34555


Q ss_pred             HHH-hhhhhhchHh
Q psy1840         400 SKV-SLALSSLSIA  412 (423)
Q Consensus       400 ~~~-~~~~~~~~~~  412 (423)
                      ..+ ..|++++...
T Consensus        82 ~~a~~~al~~~~~~   95 (225)
T 3uvj_A           82 VQIALMALKMMELS   95 (225)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            555 4456555544

>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B

Probab=99.33  E-value=5.2e-13  Score=122.62  Aligned_cols=65  Identities=26%  Similarity=0.241  Sum_probs=58.9

Q ss_pred             CCCCCCCccccceeEEEeeccccccccccCC----HhHHHHhhhccch-hhhhcc---CCCceEEEeecccCC
Q psy1840         330 RGDFVEPESFDSVTIYFSDIVGFTQLSAEST----ETGRVTTRDSRRT-PDLKVG---GSNPRQVITGTDMLR  394 (423)
Q Consensus       330 ~g~~~~~~~~~~vtv~f~di~gft~~~~~~~----p~~~v~~ln~~~~-fd~~~~---~~~~~~v~~~~~~~~  394 (423)
                      +|+.+.|+++.+|||+|+||+|||.+++..+    |.+++.+||++|+ ||.+|.   .|++++++|.||.+|
T Consensus         1 ~G~~~~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~m   73 (219)
T 2wz1_A            1 HKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYM   73 (219)
T ss_dssp             ----CCCEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEE
T ss_pred             CCCccCccceeeEEEEEEEccCcHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEE
Confidence            4889999999999999999999999999999    9999999999999 999999   789999999999999

>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*

Probab=99.30  E-value=1.1e-12  Score=120.57  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             hCCCCCCCccccceeEEEeeccccccccccCC----HhHHHHhhhccch-hhhhccCC---CceEEEeecccCC
Q psy1840         329 KRGDFVEPESFDSVTIYFSDIVGFTQLSAEST----ETGRVTTRDSRRT-PDLKVGGS---NPRQVITGTDMLR  394 (423)
Q Consensus       329 ~~g~~~~~~~~~~vtv~f~di~gft~~~~~~~----p~~~v~~ln~~~~-fd~~~~~~---~~~~v~~~~~~~~  394 (423)
                      ++|+.+.+++|++|||+|+||+|||.+++.++    |.+++.+||++|+ ||.+|.++   ++|+++|.||.||
T Consensus         2 ~~~~~~~~~~~~~vtvlF~DI~gfT~l~~~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~m   75 (220)
T 1ab8_A            2 LKNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYM   75 (220)
T ss_dssp             -----CCEEEEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEE
T ss_pred             CCCCcccccccCcEEEEEEEccchHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEE
Confidence            56788899999999999999999999998874    8999999999999 99999985   8999999999998

>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*

Probab=99.23  E-value=2e-12  Score=118.69  Aligned_cols=74  Identities=20%  Similarity=0.152  Sum_probs=61.4

Q ss_pred             cHHHHHHHhCC-CCCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         321 PRSVSESLKRG-DFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       321 p~~ia~~l~~g-~~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      -+..|.|..+. ....++.+.+|||+|+||+|||.+++..+|.+++.+||++|+ ||.+|..++.+++++.||.|+
T Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~m   88 (220)
T 1azs_A           13 ADINAKQEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYY   88 (220)
T ss_dssp             --------CCSSCCCEEEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEE
T ss_pred             ccccccccccccccccccccccEEEEEEEccChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCeEE
Confidence            34567777666 567788999999999999999999999999999999999999 999999999999999999888

>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B

Probab=99.20  E-value=1e-11  Score=111.27  Aligned_cols=78  Identities=23%  Similarity=0.230  Sum_probs=66.0

Q ss_pred             CCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCC-CceEEEeecccCC--------CcchHHHH-
Q psy1840         334 VEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGS-NPRQVITGTDMLR--------HRPHESKV-  402 (423)
Q Consensus       334 ~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~-~~~~v~~~~~~~~--------~~~~~~~~-  402 (423)
                      .+|+++.+|||+|+||+|||.+++..+|.+++.+||++|+ +|.+|.++ +.+++++.||.++        +..|+..+ 
T Consensus         2 ~~~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~~GD~~~a~fg~~~~~~~~~~~a~   81 (190)
T 3et6_A            2 APAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVLL   81 (190)
T ss_dssp             CCCEEEEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHHH
T ss_pred             CCccccceEEEEEeEecChhHhHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeCCEEEEEECCCCCchhHHHHHH
Confidence            4678899999999999999999999999999999999999 99999997 9999999999998        34455444 


Q ss_pred             hhhhhhchH
Q psy1840         403 SLALSSLSI  411 (423)
Q Consensus       403 ~~~~~~~~~  411 (423)
                      ..|+++...
T Consensus        82 ~~al~~~~~   90 (190)
T 3et6_A           82 EFALRMHEE   90 (190)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            345554443

>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}

Probab=99.19  E-value=5.2e-12  Score=114.64  Aligned_cols=62  Identities=21%  Similarity=0.291  Sum_probs=56.2

Q ss_pred             CCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         333 FVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       333 ~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      .+.|+.+.+|||+|+||+|||.+++.++|.+++.+||++|+ +|.+|..++.+++++.||.+|
T Consensus         2 ~~~~~~~~~vtvlf~DI~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~gG~v~k~~GD~~m   64 (204)
T 1yk9_A            2 NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYM   64 (204)
T ss_dssp             ----CCCSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEE
T ss_pred             CCCccccCcEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCeEE
Confidence            46789999999999999999999999999999999999999 999999999999999999988

>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A

Probab=99.11  E-value=1.5e-11  Score=113.89  Aligned_cols=63  Identities=22%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             CCCCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         331 GDFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       331 g~~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      |+.++|+.+++|||+|+||+|||.+++.. |.+++.+||++|+ +|.+|.+|+.|+++|.||.||
T Consensus         2 ~~~~~~~~~~~vtvlF~DI~gfT~l~~~~-~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~m   65 (235)
T 1fx2_A            2 NNRAPKEPTDPVTLIFTDIESSTALWAAH-PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFM   65 (235)
T ss_dssp             GGGSCCCTTSCEEEEEEEETTHHHHHHHC-TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred             CCcCCCCCCCcEEEEEEeccChHHHHHHC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCeEE
Confidence            56788999999999999999999999986 9999999999999 999999999999999999999

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.04  E-value=7.1e-11  Score=112.49  Aligned_cols=58  Identities=21%  Similarity=0.143  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.|++.||.|||+.|++ ||||||+|||++ ++.+||+|||++...               ..+.|||.+.
T Consensus       195 ~~~i~~qi~~~l~~lH~~gii-HrDlkp~NILl~-~~~vkl~DFG~a~~~---------------~~~~a~e~l~  252 (282)
T 1zar_A          195 PDEVLDMILEEVAKFYHRGIV-HGDLSQYNVLVS-EEGIWIIDFPQSVEV---------------GEEGWREILE  252 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSTTSEEEE-TTEEEECCCTTCEET---------------TSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCE-eCCCCHHHEEEE-CCcEEEEECCCCeEC---------------CCCCHHHHHH
Confidence            457999999999999999998 999999999999 999999999997532               2367888774

>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*

Probab=99.00  E-value=4.4e-11  Score=106.64  Aligned_cols=75  Identities=21%  Similarity=0.112  Sum_probs=61.6

Q ss_pred             CCCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC----CcchHHHHhhhh
Q psy1840         332 DFVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR----HRPHESKVSLAL  406 (423)
Q Consensus       332 ~~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~  406 (423)
                      ....+..+.+|||+|+||+|||.+++..+|.+++.+||++|+ ++..|..++.|++++.||.++    ...++...|+++
T Consensus         8 ~~~~~~~~~~~tvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~v~k~~GD~~ma~f~~p~~A~~~Al~~   87 (184)
T 1ybt_A            8 HHHGSAERMLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSPSAAIACADDI   87 (184)
T ss_dssp             -----CEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEEEEEECcCcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeEeCCEEEEEeCCHHHHHHHHHHH
Confidence            344567789999999999999999999999999999999999 999999999999999999999    333444444444

>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}

Probab=98.98  E-value=2.8e-10  Score=103.41  Aligned_cols=58  Identities=17%  Similarity=-0.016  Sum_probs=54.9

Q ss_pred             ccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         337 ESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       337 ~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      .+..+|||+|+||+|||.+++..+|.+++.+||++|+ ++..|.+++.+++++.||.++
T Consensus        10 ~e~~~vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~   68 (208)
T 2w01_A           10 GDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGIL   68 (208)
T ss_dssp             CEEEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred             CeEEEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCEEE
Confidence            4578999999999999999999999999999999999 999999999999999999988

>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0

Probab=98.86  E-value=6.4e-10  Score=100.06  Aligned_cols=58  Identities=21%  Similarity=0.124  Sum_probs=53.6

Q ss_pred             ccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         337 ESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       337 ~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      .+..+|||+|+||+|||.+++.++|.+++.+||++|+ ++..|..++.+.+++.||.++
T Consensus         5 ~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~   63 (198)
T 3r5g_A            5 TQRKKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVM   63 (198)
T ss_dssp             CEEEEEEEEEEEEETHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEETTEEE
T ss_pred             ceEEEEEEEEEEccccchhhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeeCCEEE
Confidence            3457999999999999999999999999999999999 999999988888888888888

>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*

Probab=98.85  E-value=8.9e-10  Score=100.92  Aligned_cols=58  Identities=24%  Similarity=0.159  Sum_probs=53.5

Q ss_pred             ccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         337 ESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       337 ~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      .+..+|||+|+||+|||.+++..+|.+++.+||++|+ ++.+|.+++.+.+++.||.+|
T Consensus        23 ~e~~~vtvlF~DI~gfT~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~m   81 (219)
T 1wc3_A           23 PEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIM   81 (219)
T ss_dssp             CEEEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred             CceeEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCeEE
Confidence            4458999999999999999999999999999999999 999999888888888888888

>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}

Probab=98.78  E-value=6.6e-09  Score=75.59  Aligned_cols=36  Identities=42%  Similarity=0.518  Sum_probs=33.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHhCC
Q psy1840         296 GLVQERTNQLTQEKKKTDALLHRMLPRSVSESLKRG  331 (423)
Q Consensus       296 ~~v~~~~~~l~~e~~~~~~ll~~~lp~~ia~~l~~g  331 (423)
                      +.+++++++|+.||+|+|+|||+|||++||++|+.|
T Consensus        31 ~~Lee~t~~L~~EK~ktd~LL~~mLP~~VA~~Lk~G   66 (66)
T 3hls_A           31 DRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRHK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCc
Confidence            478899999999999999999999999999999987

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.74  E-value=7.6e-09  Score=96.91  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHH-hCCCeeecCCCCCCEEEcCCccEEEeccCCcccc
Q psy1840          25 SISVNTTASVGMIHLH-DSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK   74 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH-~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~   74 (423)
                      ...++.|++.||.||| +.|++ ||||||.|||++.  .++|+|||++...
T Consensus       172 ~~~i~~qi~~~l~~lH~~~giv-HrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          172 VEGIFNDVVENVKRLYQEAELV-HADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCEE-CSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHHHHCCEE-eCCCCHHHEEEcC--cEEEEECcccccC
Confidence            5789999999999999 89988 9999999999998  8999999998643

>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}

Probab=98.68  E-value=1.3e-08  Score=90.92  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             CccccceeEEEeeccccccccccCCHhHHHHhhhccch--hhhhccCCCceEEEeecccCC----CcchHHHHhhhh
Q psy1840         336 PESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT--PDLKVGGSNPRQVITGTDMLR----HRPHESKVSLAL  406 (423)
Q Consensus       336 ~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~--fd~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~  406 (423)
                      +.+..+|||+|+||+|||.+++..+|.++ ..||++|.  ++..|..++.+++++.||.++    +..++...++++
T Consensus         2 ~~e~r~vtvlf~Di~gft~l~~~~~~~~~-~~l~~~~~~~~~~~i~~~~G~v~k~~GD~~~a~f~~~~~A~~~Al~i   77 (189)
T 3mr7_A            2 NAERRLCAILAADMAGYSRLMERNETDVL-NRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQAALRCALEI   77 (189)
T ss_dssp             CCEEEEEEEEEEEECCCCGGGCCCCHHHH-HHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESSHHHHHHHHHHH
T ss_pred             CCcEEEEEEEEEEchhhHHHHhhCCHHHH-HHHHHHHHHHHHHHHHHcCCEEEEEeCCEEEEEeCCHHHHHHHHHHH
Confidence            34567899999999999999999888665 77888775  999999999999999999999    555555555444

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.08  E-value=1.8e-06  Score=85.42  Aligned_cols=47  Identities=21%  Similarity=0.250  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc----------cEEEeccCCcc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW----------VLQIADFGLHA   72 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~----------~vKL~DFGla~   72 (423)
                      ...+..||+.+|.|||+.|+| ||||||.|||++.++          .+.|+||+-+-
T Consensus       207 ~~~l~~qll~~l~~lH~~gIV-HrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V  263 (397)
T 4gyi_A          207 PASLYADLIALILRLAKHGLI-HGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMV  263 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-CCCCCHHHEEEeCCCCcccccccccceEEEEeCCcc
Confidence            357889999999999999987 999999999998776          48899998654

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=96.85  E-value=0.00016  Score=68.60  Aligned_cols=80  Identities=23%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             eeecCCCCCCEEEcC--CccEEEeccCCcccccCCCcccccccc---cCCc-------cc--cC-CccccCCCCCCCCCc
Q psy1840          45 ISHGNLRSSNCLIDS--RWVLQIADFGLHAFKAGQDETGQERKL---RRRK-------LY--KA-PELLRQPHLPRGTQK  109 (423)
Q Consensus        45 i~HrDLkp~NILld~--~~~vKL~DFGla~~~~~~~~~~~~~~~---~gt~-------~y--~A-PE~l~~~~~~~~s~k  109 (423)
                      ++|||++|.||+++.  ...+.|+||+.+...............   .+..       .|  .. |+.....     ...
T Consensus       193 ~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~-----~~~  267 (304)
T 3sg8_A          193 LIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKY-----RMK  267 (304)
T ss_dssp             EECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHH-----HHH
T ss_pred             eEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHH-----HHH
Confidence            459999999999998  567899999987653221110000000   0000       01  11 1111100     122


Q ss_pred             cchHHHHHHHHHHHhCCCCC
Q psy1840         110 GDVYSFGLVLYEVIGRQGPW  129 (423)
Q Consensus       110 sDVyS~Giil~elltg~~Pf  129 (423)
                      .+.|++|.++|.+.+|..+|
T Consensus       268 ~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          268 EKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHH
Confidence            68999999999999998776

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.77  E-value=0.00086  Score=61.30  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ++|||++|.||+++.++.++|+|||.+.
T Consensus       186 l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          186 VTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             EECCCCCCCcEEEECCcEEEEEcchhcc
Confidence            5599999999999887777899999854

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=96.59  E-value=0.0016  Score=59.94  Aligned_cols=28  Identities=32%  Similarity=0.476  Sum_probs=23.8

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ++|||++|.||+++....+.|+||+.+.
T Consensus       185 l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          185 FSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EECCCCCcCcEEEECCcEEEEEEchhcc
Confidence            4599999999999887677899998753

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=96.13  E-value=0.0042  Score=60.12  Aligned_cols=30  Identities=30%  Similarity=0.495  Sum_probs=24.7

Q ss_pred             CeeecCCCCCCEEEcCCc--cEEEeccCCccc
Q psy1840          44 IISHGNLRSSNCLIDSRW--VLQIADFGLHAF   73 (423)
Q Consensus        44 ii~HrDLkp~NILld~~~--~vKL~DFGla~~   73 (423)
                      .++|||+++.||+++.++  .+.|.||+.+..
T Consensus       217 ~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          217 SIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             EEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             eEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence            355999999999998765  368999998754

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=95.50  E-value=0.1  Score=46.91  Aligned_cols=124  Identities=9%  Similarity=-0.015  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          23 IGSISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ++.-.++.|.+.+|.-+-. ..-. .+=+.|..|++..+|.|.+.+ +.+.              .....+.|||.... 
T Consensus        49 EqaWALc~Qc~~~L~~~~~~~~~~-~~i~~~~~i~l~~dG~V~f~~-~~s~--------------~~~~~~~~pe~~~~-  111 (229)
T 2yle_A           49 EQAWAVCYQCCGSLRAAARRRQPR-HRVRSAAQIRVWRDGAVTLAP-AADD--------------AGEPPPVAGKLGYS-  111 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC-CCCCSGGGEEEETTSCEEECC-C--------------------------CCSSS-
T ss_pred             HHHHHHHHHHHHHHHhhhhcccCC-ceecCCcceEEecCCceeccc-cccc--------------ccccCCCChhhccc-
Confidence            3356899999999877621 1111 222457889999999988764 2110              11123678887642 


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhc---------
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEE---------  172 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~---------  172 (423)
                         ..+.+.=|||+|+++|.-+--..|=.                       .....++.|.+||..|...         
T Consensus       112 ---~~te~~~IysLG~tLY~ALDygL~e~-----------------------eE~eLS~~LE~LL~~Mt~~~~d~~~~De  165 (229)
T 2yle_A          112 ---QCMETEVIESLGIIIYKALDYGLKEN-----------------------EERELSPPLEQLIDHMANTVEADGSNDE  165 (229)
T ss_dssp             ---SSCHHHHHHHHHHHHHHHHTTTCCTT-----------------------EEECCCHHHHHHHHHHTTCCC-------
T ss_pred             ---cchHHHHHHHHHHHHHHHhhcCCCcc-----------------------cchhhCHHHHHHHHHHHhcccccccccc
Confidence               22688899999999999884222211                       1124567777777777644         


Q ss_pred             ----------------CCCCCCCHHHHHHHHHH
Q psy1840         173 ----------------DPELRPDLRFVHHKLKE  189 (423)
Q Consensus       173 ----------------dP~~RPt~~~I~~~L~~  189 (423)
                                      .+..|+++.+|++.-..
T Consensus       166 G~~~~~eg~~d~~~~~~~~~~~sl~~Vi~~C~~  198 (229)
T 2yle_A          166 GYEAAEEGLGDEDEKRKISAIRSYRDVMKLCAA  198 (229)
T ss_dssp             -------------CCSCCCCCCSHHHHHHHHHT
T ss_pred             cccccccccccccccccccCcCCHHHHHHHHHh
Confidence                            34678888888765443

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=93.98  E-value=0.059  Score=51.04  Aligned_cols=30  Identities=13%  Similarity=0.220  Sum_probs=25.5

Q ss_pred             CCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          43 EIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        43 ~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ..++|||+++.||+++.++.+.|+||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            445599999999999888899999998753

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=90.21  E-value=0.29  Score=46.06  Aligned_cols=29  Identities=31%  Similarity=0.442  Sum_probs=23.4

Q ss_pred             eeecCCCCCCEEEcC---Ccc-EEEeccCCccc
Q psy1840          45 ISHGNLRSSNCLIDS---RWV-LQIADFGLHAF   73 (423)
Q Consensus        45 i~HrDLkp~NILld~---~~~-vKL~DFGla~~   73 (423)
                      ++|||+++.||+++.   ++. +.|.||+.+..
T Consensus       192 ~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          192 LIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             EECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             eEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence            359999999999987   344 58999997643

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=89.46  E-value=0.2  Score=49.49  Aligned_cols=30  Identities=17%  Similarity=0.390  Sum_probs=25.0

Q ss_pred             CCeeecCCCCCCEEEcCCccEEEeccCCccc
Q psy1840          43 EIISHGNLRSSNCLIDSRWVLQIADFGLHAF   73 (423)
Q Consensus        43 ~ii~HrDLkp~NILld~~~~vKL~DFGla~~   73 (423)
                      ..++|||+++.||+++.++ +++.||+.+..
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            3344999999999998876 99999998654

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=87.05  E-value=0.33  Score=44.29  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=24.5

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ++|||+.+.||+++..+.+-|.||+.+.
T Consensus       195 l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          195 VTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEcCCCCCCeEEEECCeEEEEEECcccc
Confidence            4599999999999988878899998764

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=83.02  E-value=0.47  Score=44.49  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=23.8

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ++|||+.+.||+++.+..+.|+||+.+.
T Consensus       189 liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          189 VIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cCCCCCCccCEEEeCCceEEEecchhcc
Confidence            4499999999999987767899998754

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=82.51  E-value=0.77  Score=43.12  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=22.8

Q ss_pred             CeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          44 IISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        44 ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .++|||+++.||+++ + .+.|.||+.+.
T Consensus       196 ~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          196 LRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             EECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             eeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            345999999999999 4 89999998754

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=81.08  E-value=0.54  Score=44.83  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=24.0

Q ss_pred             CeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          44 IISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        44 ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      .++|||+.+.||++++...+.|.||+.+.
T Consensus       223 ~l~HgDl~~~Nil~~~~~~~~vIDwe~a~  251 (357)
T 3ats_A          223 VLLWGDARVGNVLYRDFQPVAVLDWEMVA  251 (357)
T ss_dssp             EEECSSCSGGGEEEETTEEEEECCGGGCE
T ss_pred             eEEeCCCCCCeEEEeCCcEEEEEcccccc
Confidence            45599999999999965567899998754

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=80.06  E-value=0.75  Score=43.44  Aligned_cols=30  Identities=17%  Similarity=0.229  Sum_probs=25.0

Q ss_pred             CeeecCCCCCCEEEcCC----ccEEEeccCCccc
Q psy1840          44 IISHGNLRSSNCLIDSR----WVLQIADFGLHAF   73 (423)
Q Consensus        44 ii~HrDLkp~NILld~~----~~vKL~DFGla~~   73 (423)
                      .++|||+.+.||+++.+    +.+.|.||+.+..
T Consensus       184 ~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          184 VFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             EEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             eeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            45599999999999874    7899999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	423
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	7e-29
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	8e-24
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-23
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-22
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-22
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-21
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	8e-21
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-20
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-20
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-20
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-20
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-20
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	6e-20
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	8e-20
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-19
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-19
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-19
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-19
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	7e-19
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-18
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-18
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-18
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	4e-18
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	5e-18
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	9e-18
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-17
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	6e-17
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-17
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-16
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-16
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-15
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-15
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-15
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-15
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-14
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-14
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-14
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-13
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-13
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-13
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	7e-12
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	7e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	2e-11
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-11
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-10
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	7e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-09
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-09
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-08
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-08
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-08
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	7e-08
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-07
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-06
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-06
d1azsb_	199	d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {	4e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	5e-05
d1azsa_	190	d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {D	7e-05
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-04
d1fx2a_	235	d.58.29.1 (A:) Receptor-type monomeric adenylyl cy	1e-04
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	0.001

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 7e-29
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +LH   II H +L+S+N  +     ++I DFGL   K+    + Q  +L    L+ A
Sbjct: 116 GMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMA 174

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE++R       + + DVY+FG+VLYE++  Q P+ +  + + + I  +     L PD S
Sbjct: 175 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSN--INNRDQIIFMVGRGYLSPDLS 232

Query: 155 SL--DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGL 194
            +  +C  ++   M  C ++  + RP    +   ++ +   L
Sbjct: 233 KVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSL 274

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 8e-24
 Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRR--KLY 92
           GM  L   + + H +L + NC++D ++ +++ADFGL      ++      K   +    +
Sbjct: 142 GMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKW 200

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
            A E L+     + T K DV+SFG++L+E++ R  P     +   +I   + QG   R  
Sbjct: 201 MALESLQT---QKFTTKSDVWSFGVLLWELMTRGAPPYP-DVNTFDITVYLLQG---RRL 253

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFN 212
                C   +   M  CW    E+RP    +  ++  +       I ++ + +   Y  N
Sbjct: 254 LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI---FSTFIGEHYVHVNATYV-N 309

Query: 213 LE 214
           ++
Sbjct: 310 VK 311

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.8 bits (240), Expect = 3e-23
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L + + + H +L + NCL+    V++IADFGL       D    +        +  
Sbjct: 152 GMAYLSERKFV-HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMP 210

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE +        T + DV+++G+VL+E+        +  M  EE+I  V  G+ L     
Sbjct: 211 PESIFYNRY---TTESDVWAYGVVLWEIFSYGLQPYY-GMAHEEVIYYVRDGNILACPE- 265

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             +C   +   MR CW + P  RP    +H  L+ M
Sbjct: 266 --NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRM 299

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (234), Expect = 2e-22
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 13/160 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L D   + H +L + N L++S  V +++DFGL  F    ++   +         K 
Sbjct: 140 GMKYLADMNYV-HRDLAARNILVNSNLVCKVSDFGLSRF---LEDDTSDPTYTSALGGKI 195

Query: 95  PELLRQPHLPRGTQ---KGDVYSFGLVLYEVIGR-QGPWGHLRMTDEEIITSVTQGSGLR 150
           P     P   +  +     DV+S+G+V++EV+   + P+    MT++++I ++ Q   L 
Sbjct: 196 PIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWD--MTNQDVINAIEQDYRLP 253

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           P    +DC  ++   M  CW++D   RP    + + L +M
Sbjct: 254 PP---MDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKM 290

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (232), Expect = 3e-22
 Identities = 43/184 (23%), Positives = 66/184 (35%), Gaps = 28/184 (15%)

Query: 35  GMIHLHDSEI-------ISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLR 87
           G+ HLH   +       I+H +L+S N L+       IAD GL        +T       
Sbjct: 112 GLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNH 171

Query: 88  RR--KLYKAPELLRQPHLPRG---TQKGDVYSFGLVLYEVIGRQGPWG------------ 130
           R   K Y APE+L      +     ++ D+Y+ GLV +E+  R    G            
Sbjct: 172 RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDL 231

Query: 131 HLRMTDEEIITSVTQGSGLRPD----TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK 186
                  E +  V     LRP+      S +    +   MR CW  +   R     +   
Sbjct: 232 VPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT 291

Query: 187 LKEM 190
           L ++
Sbjct: 292 LSQL 295

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 2e-21
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L ++ +I H +L + NCL+    V++++DFG+  F    D+       +    + +
Sbjct: 113 GMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRF-VLDDQYTSSTGTKFPVKWAS 170

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE+         + K DV+SFG++++EV            ++ E++  ++ G  L     
Sbjct: 171 PEVFSFSRY---SSKSDVWSFGVLMWEVFSEGKIPYE-NRSNSEVVEDISTGFRLYKPR- 225

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +  +   M  CW+E PE RP    +  +L E+
Sbjct: 226 --LASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEI 259

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 8e-21
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 36  MIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAP 95
           M ++     + H +LR++N L+    V ++ADFGL A     +E    +  +    + AP
Sbjct: 126 MAYVERMNYV-HRDLRAANILVGENLVCKVADFGL-ARLIEDNEYTARQGAKFPIKWTAP 183

Query: 96  ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSS 155
           E          T K DV+SFG++L E+  +        M + E++  V +  G R     
Sbjct: 184 EAALYGRF---TIKSDVWSFGILLTELTTKGRVPYP-GMVNREVLDQVER--GYRMPCPP 237

Query: 156 LDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
            +C  S+   M  CW ++PE RP   ++   L++ 
Sbjct: 238 -ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 271

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 1e-20
 Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 14/178 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L   + I H +L + N L+   +V +IADFGL   +    +    R   R   + A
Sbjct: 139 GMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVR---WMA 194

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
            E L        T   DV+S+G++L+E++   G   +  MT  E+   + QG  L     
Sbjct: 195 IESLNYSV---YTTNSDVWSYGVLLWEIVSLGGTP-YCGMTCAELYEKLPQGYRLEK--- 247

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKANIFDNMLAIMEKYAFN 212
            L+C   +   MR CW E P  RP    +   L  M    K  +   +    EK+ + 
Sbjct: 248 PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNTTL---YEKFTYA 302

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 2e-20
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 11/157 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  + +   I H +LR++N L+      +IADFGL A     +E       +    + A
Sbjct: 121 GMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGL-ARLIEDNEYTAREGAKFPIKWTA 178

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL-RPDT 153
           PE +        T K DV+SFG++L E++          MT+ E+I ++ +G  + RPD 
Sbjct: 179 PEAINYGT---FTIKSDVWSFGILLTEIVTHGRIPYP-GMTNPEVIQNLERGYRMVRPD- 233

Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +C   +   MR CW+E PE RP   ++   L++ 
Sbjct: 234 ---NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 3e-20
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            M +L  +  + H +L + N L+    V +++DFGL    +   +TG+         + A
Sbjct: 115 AMEYLEGNNFV-HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK-----LPVKWTA 168

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE LR+      + K DV+SFG++L+E+        + R+  ++++  V +G   + D  
Sbjct: 169 PEALREKKF---STKSDVWSFGILLWEIYSFGRVP-YPRIPLKDVVPRVEKG--YKMDAP 222

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              C P++   M+ CW  D  +RP    +  +L+ +
Sbjct: 223 D-GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 257

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 3e-20
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 36  MIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQERKLRRRKLYKA 94
            +    +    H +L + N L++S  V +++DFGL    +   + T      +    + A
Sbjct: 122 GMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTA 181

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE +            DV+SFG+V++EV+          +++ E++ ++    G R  T 
Sbjct: 182 PEAISYRKFT---SASDVWSFGIVMWEVMTYGERPYW-ELSNHEVMKAIND--GFRLPTP 235

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             DC  +I   M  CW+++   RP    +   L ++
Sbjct: 236 M-DCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 270

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (217), Expect = 4e-20
 Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 8/146 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + +LHD++II H +L++ N L      +++ADFG+ A      +            + A
Sbjct: 122 ALNYLHDNKII-HRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPY--WMA 178

Query: 95  PELLRQPHLPRG--TQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
           PE++            K DV+S G+ L E+   + P     +    ++  + +       
Sbjct: 179 PEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHE--LNPMRVLLKIAKSEPPTLA 236

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRP 178
             S   + +    ++ C E++ + R 
Sbjct: 237 QPS-RWSSNFKDFLKKCLEKNVDARW 261

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 6e-20
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 7/156 (4%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  L     + H +L + N L+    V++I DFGL                R    + A
Sbjct: 176 GMEFLEFKSCV-HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMA 234

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE L +      T K DV+S+G++L+E+             D      +    G + D  
Sbjct: 235 PESLFEGIY---TIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQN--GFKMDQP 289

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
                  I   M++CW  D   RP    +   L   
Sbjct: 290 F-YATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQ 324

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.7 bits (214), Expect = 8e-20
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 9/156 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            M +L     I H +L + NCL+    ++++ADFG  +     D        +    + A
Sbjct: 127 AMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIKWTA 184

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE L        + K DV++FG++L+E+        +  +   ++   + +   +     
Sbjct: 185 PESLAYNKF---SIKSDVWAFGVLLWEIATYGMSP-YPGIDLSQVYELLEKDYRMERPE- 239

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              C   +   MR CW+ +P  RP    +H   + M
Sbjct: 240 --GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM 273

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (214), Expect = 1e-19
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL-YK 93
           GM +L +   + H +L + N L+ +R   +I+DFGL       D     R   +  L + 
Sbjct: 121 GMKYLEEKNFV-HRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWY 179

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
           APE +        + + DV+S+G+ ++E +   Q P+    M   E++  + QG   R +
Sbjct: 180 APECINFRKF---SSRSDVWSYGVTMWEALSYGQKPYKK--MKGPEVMAFIEQG--KRME 232

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +C P + A M  CW    E RPD   V  +++  
Sbjct: 233 CPP-ECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 269

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (210), Expect = 4e-19
 Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 8/156 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L D  ++ H +L + N L+ +   ++I DFGL      +++       +    + A
Sbjct: 123 GMNYLEDRRLV-HRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA 181

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
            E +        T + DV+S+G+ ++E++          +   EI + + +G  L     
Sbjct: 182 LESILHRIY---THQSDVWSYGVTVWELMTFGSKPYD-GIPASEISSILEKGERLPQPP- 236

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              C   +   M  CW  D + RP  R +  +  +M
Sbjct: 237 --ICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 270

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 5e-19
 Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            M +L   + + H +L + NCL++ + V++++DFGL +     DE       +    +  
Sbjct: 112 AMEYLESKQFL-HRDLAARNCLVNDQGVVKVSDFGL-SRYVLDDEYTSSVGSKFPVRWSP 169

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE+L        + K D+++FG++++E+    G   + R T+ E    + QG  L     
Sbjct: 170 PEVLMYSKF---SSKSDIWAFGVLMWEIYSL-GKMPYERFTNSETAEHIAQGLRLYRPH- 224

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +  +   M +CW E  + RP  + +   + ++
Sbjct: 225 --LASEKVYTIMYSCWHEKADERPTFKILLSNILDV 258

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 6e-19
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           GM +L +S  + H +L + N L+ ++   +I+DFGL  A +A ++    +   +    + 
Sbjct: 119 GMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY 177

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
           APE +        + K DV+SFG++++E     Q P+    M   E+   + +G   R  
Sbjct: 178 APECINYYKF---SSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKG--ERMG 230

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             +  C   +   M  CW  D E RP    V  +L+  
Sbjct: 231 CPA-GCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 267

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 7e-19
 Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 35  GMIHLHD----SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRK 90
            +   H        + H +L+ +N  +D +  +++ DFGL   +    +T   +      
Sbjct: 121 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA--RILNHDTSFAKAFVGTP 178

Query: 91  LYKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLR 150
            Y +PE + +       +K D++S G +LYE+     P+     + +E+   + +G   R
Sbjct: 179 YYMSPEQMNRMSY---NEKSDIWSLGCLLYELCALMPPFTA--FSQKELAGKIREGKFRR 233

Query: 151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
                   +  +   +          RP + 
Sbjct: 234 IPY---RYSDELNEIITRMLNLKDYHRPSVE 261

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (206), Expect = 1e-18
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +LH   +I H ++++ N L+    ++++ DFG  +                   + A
Sbjct: 127 GLAYLHSHNMI-HRDVKAGNILLSEPGLVKLGDFGSASI------MAPANSFVGTPYWMA 179

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE++      +   K DV+S G+   E+  R+ P  +  M     +  + Q     P   
Sbjct: 180 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNE--SPALQ 235

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
           S   +      + +C ++ P+ RP
Sbjct: 236 SGHWSEYFRNFVDSCLQKIPQDRP 259

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 2e-18
 Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 13/149 (8%)

Query: 35  GMIHLHD-SEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           G+  LH  +  I H +L+  N  I      ++I D GL    A        + +     +
Sbjct: 124 GLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGL----ATLKRASFAKAVIGTPEF 179

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
            APE+  + +     +  DVY+FG+ + E+   + P+        +I   VT   G++P 
Sbjct: 180 MAPEMYEEKY----DESVDVYAFGMCMLEMATSEYPYSE-CQNAAQIYRRVTS--GVKPA 232

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           +      P +   +  C  ++ + R  ++
Sbjct: 233 SFDKVAIPEVKEIIEGCIRQNKDERYSIK 261

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 14/147 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + + H   +I H +++  N L+ S   L+IADFG     +    + +   L     Y  
Sbjct: 118 ALSYCHSKRVI-HRDIKPENLLLGSAGELKIADFGW----SVHAPSSRRTTLCGTLDYLP 172

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE++         +K D++S G++ YE +  + P+     T +E    +++     PD  
Sbjct: 173 PEMIEGRMH---DEKVDLWSLGVLCYEFLVGKPPFEA--NTYQETYKRISRVEFTFPD-- 225

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLR 181
                      +    + +P  RP LR
Sbjct: 226 --FVTEGARDLISRLLKHNPSQRPMLR 250

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 4e-18
 Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L+ ++ + H +L + NC++   + ++I DFG+       D   +  K      + +
Sbjct: 145 GMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMS 203

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGL-RPD 152
           PE L+       T   DV+SFG+VL+E+    + P+    +++E+++  V +G  L +PD
Sbjct: 204 PESLKDGVF---TTYSDVWSFGVVLWEIATLAEQPYQG--LSNEQVLRFVMEGGLLDKPD 258

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
               +C   +   MR CW+ +P++RP    +   +KE 
Sbjct: 259 ----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 292

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 5e-18
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 10/157 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLH-AFKAGQDETGQERKLRRRKLYK 93
           GM +L     I H +L + N L+ +R +++I DFGL  A     D    +   +    + 
Sbjct: 123 GMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWC 181

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
           APE L+       +   D + FG+ L+E+    Q PW    +   +I+  + +  G R  
Sbjct: 182 APESLKTRTF---SHASDTWMFGVTLWEMFTYGQEPWIG--LNGSQILHKIDKE-GERLP 235

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKE 189
               DC   I   M  CW   PE RP    +   L E
Sbjct: 236 RPE-DCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLE 271

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 9e-18
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 12/161 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+++LH   I  H +++  N L+D R  L+I+DFGL       +      K+     Y A
Sbjct: 115 GVVYLHGIGIT-HRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 173

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL+        +  DV+S G+VL  ++  + PW     + +E      + + L P   
Sbjct: 174 PELLK--RREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWK- 230

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLR------FVHHKLKE 189
                 + +A +     E+P  R  +       + +  LK+
Sbjct: 231 --KIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPLKK 269

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 4e-17
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  L     I H +L + N L+    + +I DFGL            +   R    + A
Sbjct: 157 GMAFLASKNCI-HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMA 215

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE +        T + DV+S+G+ L+E+             D +    + +G       S
Sbjct: 216 PESIFNCV---YTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG---FRMLS 269

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
                  +   M+TCW+ DP  RP  + +   +++ 
Sbjct: 270 PEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 6e-17
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + +LH   II H +L+  N L++    +QI DFG     + + +  +         Y +
Sbjct: 120 ALEYLHGKGII-HRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVS 178

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL +       +  D+++ G ++Y+++    P+      +  I   + +     P+  
Sbjct: 179 PELLTEKSA---CKSSDLWALGCIIYQLVAGLPPFRA--GNEYLIFQKIIKLEYDFPE-- 231

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
                P     +      D   R 
Sbjct: 232 --KFFPKARDLVEKLLVLDATKRL 253

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 9e-17
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM +L   + I H +L + N L+    V++IADFGL       D   +    R    + A
Sbjct: 147 GMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA 205

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE L        T + DV+SFG++L+E+    G   +  +  EE+   + +G   R D  
Sbjct: 206 PEALFDRIY---THQSDVWSFGVLLWEIFTLGGSP-YPGVPVEELFKLLKEG--HRMDKP 259

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
           S +C   +   MR CW   P  RP  + +   L  +
Sbjct: 260 S-NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI 294

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 1e-16
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           GM  L   + I H +L + N L+  + V++I DFGL        +  ++   R    + A
Sbjct: 146 GMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA 204

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE +        T + DV+SFG++L+E+             DEE    + +G+ +R    
Sbjct: 205 PETIFDRVY---TIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPD- 260

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKAN 197
                P +   M  CW  +P  RP    +   L  +   L+AN
Sbjct: 261 --YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL---LQAN 298

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 6e-16
 Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + +L     + H ++ + N L+ S   +++ DFGL  +          +     K    
Sbjct: 120 ALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAP 178

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
             +  +          DV+ FG+ ++E++          + + ++I  +  G  L     
Sbjct: 179 ESINFRRFTS----ASDVWMFGVCMWEILMHGVKPFQ-GVKNNDVIGRIENGERLPMPP- 232

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
             +C P++ + M  CW  DP  RP    +  +L  +
Sbjct: 233 --NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 266

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 74.3 bits (182), Expect = 1e-15
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 9/147 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            +  LH   I+ H +L+  N L+D    +++ DFG        D   + R++     Y A
Sbjct: 122 VICALHKLNIV-HRDLKPENILLDDDMNIKLTDFGFSCQL---DPGEKLREVCGTPSYLA 177

Query: 95  PELLRQPHL---PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           PE++        P   ++ D++S G+++Y ++    P+ H       ++  +  G+    
Sbjct: 178 PEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH--RKQMLMLRMIMSGNYQFG 235

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
                D + ++   +       P+ R 
Sbjct: 236 SPEWDDYSDTVKDLVSRFLVVQPQKRY 262

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 75.1 bits (184), Expect = 2e-15
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRW--VLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           G+ H+H++  + H +L+  N +  ++    L++ DFGL A     D     +       +
Sbjct: 136 GLCHMHENNYV-HLDLKPENIMFTTKRSNELKLIDFGLTAH---LDPKQSVKVTTGTAEF 191

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
            APE+     +       D++S G++ Y ++    P+G     D+E + +V        D
Sbjct: 192 AAPEVAEGKPV---GYYTDMWSVGVLSYILLSGLSPFGG--ENDDETLRNVKSCDWNMDD 246

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRP 178
           ++    +      +R     DP  R 
Sbjct: 247 SAFSGISEDGKDFIRKLLLADPNTRM 272

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (178), Expect = 6e-15
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            +  LH +++I H +++S N L+     +++ DFG  A    +              + A
Sbjct: 128 ALEFLHSNQVI-HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPY--WMA 184

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE++ +        K D++S G++  E+I  + P+ +        +  +           
Sbjct: 185 PEVVTRKAY---GPKVDIWSLGIMAIEMIEGEPPYLN--ENPLRALYLIATNGTPELQNP 239

Query: 155 SLDCAPSIIACMRTCWEEDPELRPDLR 181
               +      +  C + D E R   +
Sbjct: 240 E-KLSAIFRDFLNRCLDMDVEKRGSAK 265

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 8e-15
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +L +   I H +++ SN L++SR  +++ DFG+    +GQ            + Y +
Sbjct: 116 GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSMANSFVGTRSYMS 171

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEII 140
           PE L+  H    + + D++S GL L E+   + P       + E++
Sbjct: 172 PERLQGTHY---SVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELM 214

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 9e-15
 Identities = 31/215 (14%), Positives = 78/215 (36%), Gaps = 19/215 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSR--WVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
            +  LH   I  H ++R  N +  +R    ++I +FG        D             Y
Sbjct: 114 ALQFLHSHNIG-HFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPE---Y 169

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
            APE+ +   +   +   D++S G ++Y ++    P+     T+++II ++        +
Sbjct: 170 YAPEVHQHDVV---STATDMWSLGTLVYVLLSGINPFLA--ETNQQIIENIMNAEYTFDE 224

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLR------FVHHKLKEMNAGLKANI-FDNMLAI 205
            +  + +   +  +     ++ + R          ++  K++ ++  +   +        
Sbjct: 225 EAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIERVSTKVIRTLKHRRYYHT 284

Query: 206 MEKYAFNLEGEWTDWTASLRRRPKMGPCSRAASRI 240
           + K   N+       +     R + G  S A  ++
Sbjct: 285 LIKKDLNMVVSAARISCGGAIRSQKGV-SVAKVKV 318

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 71.4 bits (174), Expect = 1e-14
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 20/185 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWV-----LQIADFGLHAFKAGQDETGQERKLRRR 89
            +  +H+  ++ + +++  N LI          + + DFG+  F              ++
Sbjct: 113 RVQSIHEKSLV-YRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKK 171

Query: 90  KL-----YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVI-GRQGPWGHLRMTDEEIITSV 143
            L     Y +            +++ D+ + G V    + G     G    T+++    +
Sbjct: 172 NLSGTARYMSINTHLGREQ---SRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERI 228

Query: 144 TQGSGLRPDTSSL-DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAGLKAN---IF 199
            +     P               M        +  PD  ++     ++   L       F
Sbjct: 229 GEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENF 288

Query: 200 D-NML 203
           D N+L
Sbjct: 289 DWNLL 293

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 70.9 bits (173), Expect = 4e-14
 Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 11/146 (7%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSR--WVLQIADFGLHAFKAGQDETGQERKLRRRKLY 92
           G+ H+H+  I+ H +++  N + +++    ++I DFGL A K   DE  +         +
Sbjct: 139 GLKHMHEHSIV-HLDIKPENIMCETKKASSVKIIDFGL-ATKLNPDEIVKVTTATAE--F 194

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD 152
            APE++ +  +       D+++ G++ Y ++    P+      D E + +V +      +
Sbjct: 195 AAPEIVDREPV---GFYTDMWAIGVLGYVLLSGLSPFAG--EDDLETLQNVKRCDWEFDE 249

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRP 178
            +    +P     ++   +++P  R 
Sbjct: 250 DAFSSVSPEAKDFIKNLLQKEPRKRL 275

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 69.0 bits (168), Expect = 8e-14
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 7/145 (4%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHA-FKAGQDETGQERKLRRRKLYK 93
            +   H + II H +++ +N +I +   +++ DFG+        +   Q   +     Y 
Sbjct: 123 ALNFSHQNGII-HRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 181

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           +PE  R   +     + DVYS G VLYEV+  + P+     +   +     +   + P  
Sbjct: 182 SPEQARGDSV---DARSDVYSLGCVLYEVLTGEPPFT--GDSPVSVAYQHVREDPIPPSA 236

Query: 154 SSLDCAPSIIACMRTCWEEDPELRP 178
                +  + A +     ++PE R 
Sbjct: 237 RHEGLSADLDAVVLKALAKNPENRY 261

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 3e-13
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 6/149 (4%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + +LH   I  H +++  N L  S+    I       F                  Y A
Sbjct: 123 AIQYLHSINIA-HRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVA 181

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW--GHLRMTDEEIITSVTQGSGLRPD 152
           PE+L         +  D++S G+++Y ++    P+   H       + T +  G    P+
Sbjct: 182 PEVLGPEKY---DKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 238

Query: 153 TSSLDCAPSIIACMRTCWEEDPELRPDLR 181
               + +  +   +R   + +P  R  + 
Sbjct: 239 PEWSEVSEEVKMLIRNLLKTEPTQRMTIT 267

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.6 bits (164), Expect = 3e-13
 Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 16/167 (9%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSR---WVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
            + ++H    I H +++  N L+       ++ I DFG  A K     T Q    R  K 
Sbjct: 115 RIEYIHSKNFI-HRDVKPDNFLMGLGKKGNLVYIIDFG-LAKKYRDARTHQHIPYRENKN 172

Query: 92  ------YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ 145
                 Y +            +++ D+ S G VL        PW  L+   +        
Sbjct: 173 LTGTARYASINTHLGIEQ---SRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERIS 229

Query: 146 GSGLRPDTSSL--DCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +      L           +  C     + +PD  ++    + +
Sbjct: 230 EKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 276

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 9e-13
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+  LH   I+ + +L+  N L+D    ++IADFG+   K       +         Y A
Sbjct: 115 GLQFLHSKGIV-YRDLKLDNILLDKDGHIKIADFGM--CKENMLGDAKTNTFCGTPDYIA 171

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE+L            D +SFG++LYE++  Q P+      +EE+  S+   +   P   
Sbjct: 172 PEILLGQKY---NHSVDWWSFGVLLYEMLIGQSPFHG--QDEEELFHSIRMDNPFYPR-- 224

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
                      +   +  +PE R 
Sbjct: 225 --WLEKEAKDLLVKLFVREPEKRL 246

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (160), Expect = 1e-12
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 15/143 (10%)

Query: 36  MIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAP 95
           + +LH  +II + +L+  N L+D    ++I DFG   +      T     L     Y AP
Sbjct: 117 LEYLHSKDII-YRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT-----LCGTPDYIAP 170

Query: 96  ELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSS 155
           E++         +  D +SFG+++YE++    P+        +    +       P   +
Sbjct: 171 EVVSTKPY---NKSIDWWSFGILIYEMLAGYTPFYD--SNTMKTYEKILNAELRFPPFFN 225

Query: 156 LDCAPSIIACMRTCWEEDPELRP 178
                 +   +      D   R 
Sbjct: 226 ----EDVKDLLSRLITRDLSQRL 244

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 7e-12
 Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 12/150 (8%)

Query: 36  MIHLHDSEIISHGNLRSSNCLIDSRWV----LQIADFGLHAFKAGQDETGQERKLRRRKL 91
            ++   S  I+H +L+  N ++  R V    ++I DFGL       D   + + +     
Sbjct: 125 GVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK---IDFGNEFKNIFGTPE 181

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           + APE++    L     + D++S G++ Y ++    P+  L  T +E + +V+  +    
Sbjct: 182 FVAPEIVNYEPL---GLEADMWSIGVITYILLSGASPF--LGDTKQETLANVSAVNYEFE 236

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
           D    + +      +R    +DP+ R  ++
Sbjct: 237 DEYFSNTSALAKDFIRRLLVKDPKKRMTIQ 266

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.0 bits (155), Expect = 7e-12
 Identities = 28/144 (19%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ H+H+  ++ + +L+ +N L+D    ++I+D GL    A      +         Y A
Sbjct: 119 GLEHMHNRFVV-YRDLKPANILLDEHGHVRISDLGL----ACDFSKKKPHASVGTHGYMA 173

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE+L++          D +S G +L++++    P+   +  D+  I  +T    +     
Sbjct: 174 PEVLQKGV--AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPD- 230

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
               +P + + +    + D   R 
Sbjct: 231 --SFSPELRSLLEGLLQRDVNRRL 252

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 2e-11
 Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 5/144 (3%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + HLH   II + +++  N L+DS   + + DFGL + +   DET +         Y A
Sbjct: 141 ALEHLHKLGII-YRDIKLENILLDSNGHVVLTDFGL-SKEFVADETERAYDFCGTIEYMA 198

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           P+++R           D +S G+++YE++    P+      ++     +++         
Sbjct: 199 PDIVRGGDSGHDK-AVDWWSLGVLMYELLTGASPFTV--DGEKNSQAEISRRILKSEPPY 255

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
             + +      ++    +DP+ R 
Sbjct: 256 PQEMSALAKDLIQRLLMKDPKKRL 279

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 3e-11
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 20/148 (13%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK 93
            + H H+  ++ H +++  N LID +R  L++ DFG         +          ++Y 
Sbjct: 122 AVRHCHNCGVL-HRDIKDENILIDLNRGELKLIDFGS----GALLKDTVYTDFDGTRVYS 176

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
            PE +R  +     +   V+S G++LY+++    P+ H    DEEII         R   
Sbjct: 177 PPEWIR--YHRYHGRSAAVWSLGILLYDMVCGDIPFEH----DEEIIRGQVF---FRQRV 227

Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLR 181
           S           +R C    P  RP   
Sbjct: 228 S-----SECQHLIRWCLALRPSDRPTFE 250

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLI---DSRWVLQIADFGLHAFKAGQDETGQERKLRRRKL 91
            + +LHD  I+ H +L+  N L    D    + I+DFGL      +D             
Sbjct: 119 AVKYLHDLGIV-HRDLKPENLLYYSLDEDSKIMISDFGLSKM---EDPGSVLSTACGTPG 174

Query: 92  YKAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRP 151
           Y APE+L Q      ++  D +S G++ Y ++    P+      D ++   + +      
Sbjct: 175 YVAPEVLAQKPY---SKAVDCWSIGVIAYILLCGYPPFYD--ENDAKLFEQILKAEYEFD 229

Query: 152 DTSSLDCAPSIIACMRTCWEEDPELRP 178
                D + S    +R   E+DPE R 
Sbjct: 230 SPYWDDISDSAKDFIRHLMEKDPEKRF 256

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 7e-10
 Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 12/144 (8%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
            + +LH  +++ + +++  N ++D    ++I DFGL   K G  +    +       Y A
Sbjct: 117 ALEYLHSRDVV-YRDIKLENLMLDKDGHIKITDFGL--CKEGISDGATMKTFCGTPEYLA 173

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE+L         +  D +  G+V+YE++  + P+ +     E +   +       P T 
Sbjct: 174 PEVLEDNDY---GRAVDWWGLGVVMYEMMCGRLPFYN--QDHERLFELILMEEIRFPRTL 228

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
           S    P   + +    ++DP+ R 
Sbjct: 229 S----PEAKSLLAGLLKKDPKQRL 248

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 15/144 (10%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
              +LH  ++I + +L+  N LID +  +Q+ DFG      G+  T     L       A
Sbjct: 153 TFEYLHSLDLI-YRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT-----LCGTPEALA 206

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE++         +  D ++ G+++YE+     P+        +I   +  G    P   
Sbjct: 207 PEIILSKGY---NKAVDWWALGVLIYEMAAGYPPFFA--DQPIQIYEKIVSGKVRFPS-- 259

Query: 155 SLDCAPSIIACMRTCWEEDPELRP 178
               +  +   +R   + D   R 
Sbjct: 260 --HFSSDLKDLLRNLLQVDLTKRF 281

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 4e-09
 Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 29/170 (17%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGL-HAFKAGQDETGQERKLRRRKLYK 93
           G+ ++H + ++ H +L+ SN L+++   L+I DFGL        D TG   +    + Y+
Sbjct: 121 GLKYIHSANVL-HRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 179

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW------------------------ 129
           APE++        T+  D++S G +L E++  +  +                        
Sbjct: 180 APEIMLNSK--GYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDL 237

Query: 130 -GHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
              + +     + S+   + +  +    +     +  +      +P  R 
Sbjct: 238 NCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRI 287

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 32/170 (18%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+  LH   ++ H +L+  N L+ S   +++ADFGL    + Q              Y+A
Sbjct: 128 GLDFLHSHRVV-HRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLW---YRA 183

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGL----- 149
           PE+L Q          D++S G +  E+  R+  +     +D + +  +    GL     
Sbjct: 184 PEVLLQSSY---ATPVDLWSVGCIFAEMFRRKPLFRG--SSDVDQLGKILDVIGLPGEED 238

Query: 150 ------------------RPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
                               +    D        +  C   +P  R    
Sbjct: 239 WPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY 288

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 32/169 (18%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+   H   ++ H +L+  N LI++   +++ADFGL         T     +     Y+A
Sbjct: 114 GLAFCHSHRVL-HRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLW--YRA 170

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PE+L        +   D++S G +  E++ R+  +     ++ + +  + +  G   +  
Sbjct: 171 PEILLG--CKYYSTAVDIWSLGCIFAEMVTRRALFPG--DSEIDQLFRIFRTLGTPDEVV 226

Query: 155 SLDC-------------------------APSIIACMRTCWEEDPELRP 178
                                             + +      DP  R 
Sbjct: 227 WPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRI 275

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 31/168 (18%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ +LH    I H +L+ +N L+D   VL++ADFGL   K+              + Y+A
Sbjct: 112 GLEYLH-QHWILHRDLKPNNLLLDENGVLKLADFGLA--KSFGSPNRAYTHQVVTRWYRA 168

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS 154
           PELL            D+++ G +L E++ R         +D + +T + +  G   +  
Sbjct: 169 PELLFGAR--MYGVGVDMWAVGCILAELLLRVPFLPG--DSDLDQLTRIFETLGTPTEEQ 224

Query: 155 SLD------------------------CAPSIIACMRTCWEEDPELRP 178
             D                            ++  ++  +  +P  R 
Sbjct: 225 WPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARI 272

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 7e-08
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 35/177 (19%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRR--KLY 92
           G+ ++H ++I+ H +++++N LI    VL++ADFGL    +    +   R   R     Y
Sbjct: 129 GLYYIHRNKIL-HRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWY 187

Query: 93  KAPELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG---- 148
           + PELL            D++  G ++ E+  R         T++  +  ++Q  G    
Sbjct: 188 RPPELLLGER--DYGPPIDLWGAGCIMAEMWTRSPIMQ--GNTEQHQLALISQLCGSITP 243

Query: 149 ------------------------LRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR 181
                                   ++    +    P  +  +      DP  R D  
Sbjct: 244 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSD 300

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 28/170 (16%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ + HD  ++ H +L+  N LI+    L+IADFGL   +A      +         Y+A
Sbjct: 112 GIAYCHDRRVL-HRDLKPQNLLINREGELKIADFGL--ARAFGIPVRKYTHEIVTLWYRA 168

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW-------------GHLRMTDEEIIT 141
           P++L      + +   D++S G +  E++     +               L   + +   
Sbjct: 169 PDVLMGS--KKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWP 226

Query: 142 SVTQGSGLRPDTSSL----------DCAPSIIACMRTCWEEDPELRPDLR 181
           +VT+     P+ +                S I  +    + DP  R   +
Sbjct: 227 NVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAK 276

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 31/169 (18%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+   H   ++ H +L+  N LI+    L++A+FGL A   G        ++        
Sbjct: 113 GLGFCHSRNVL-HRDLKPQNLLINRNGELKLANFGL-ARAFGIPVRCYSAEVVTLWYRPP 170

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSG------ 148
             L         +   D++S G +  E+     P        ++ +  + +  G      
Sbjct: 171 DVLFGAKLY---STSIDMWSAGCIFAELANAGRPLFPGN-DVDDQLKRIFRLLGTPTEEQ 226

Query: 149 --------------LRPDTSSL-----DCAPSIIACMRTCWEEDPELRP 178
                         + P T+SL         +    ++   + +P  R 
Sbjct: 227 WPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRI 275

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 9/157 (5%)

Query: 35  GMIHLHDSEIISHGNLRSS-NCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYK 93
            + ++H   I  H +++     L     VL++ DFG                    + Y+
Sbjct: 134 SLAYIHSFGIC-HRDIKPQNLLLDPDTAVLKLCDFGSAKQ---LVRGEPNVSYICSRYYR 189

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDT 153
           APEL+        T   DV+S G VL E++  Q  +     +  + +  + +  G     
Sbjct: 190 APELIFGAT--DYTSSIDVWSAGCVLAELLLGQPIFPG--DSGVDQLVEIIKVLGTPTRE 245

Query: 154 SSLDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEM 190
              +  P+         +  P  +        +   +
Sbjct: 246 QIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIAL 282

>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 4e-06
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 337 ESFDSVTIYFSDIVGFTQLSAESTE 361
           +S+D V + F+ I  F +   ES  
Sbjct: 2   QSYDCVCVMFASIPDFKEFYTESDV 26

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 33/169 (19%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ ++H S  I H +L+ SN  ++    L+I DFGL      +            + Y+A
Sbjct: 133 GLKYIH-SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYV-----ATRWYRA 186

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW------------------------- 129
           PE++         Q  D++S G ++ E++  +  +                         
Sbjct: 187 PEIMLNWM--HYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLK 244

Query: 130 GHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP 178
                +    I S+TQ   +      +   P  +  +      D + R 
Sbjct: 245 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRI 293

>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]} Length = 190

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase VC1, domain C1a
species: Dog (Canis familiaris) [TaxId: 9615]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 337 ESFDSVTIYFSDIVGFTQLSAEST 360
           +  D+V+I F+DI GFT L+++ T
Sbjct: 10  QKHDNVSILFADIEGFTSLASQCT 33

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSR-WVLQIADFGLHAFKAGQDETGQERKLRRRKLYK 93
           G+ ++H    I H +++  N L++       +    +                 + + Y+
Sbjct: 137 GLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYR 196

Query: 94  APELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPW----GHLRMTDEEIITSVTQGSGL 149
           +PE+L            D++S   +++E+I     +    GH    D++ I  + +  G 
Sbjct: 197 SPEVLLGAPW---GCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGE 253

Query: 150 RPD 152
            P 
Sbjct: 254 LPS 256

>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]} Length = 235

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Receptor-type monomeric adenylyl cyclase
species: Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 334 VEPESFDSVTIYFSDIVGFTQLSAESTE 361
              E  D VT+ F+DI   T L A   +
Sbjct: 5   APKEPTDPVTLIFTDIESSTALWAAHPD 32

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 37/171 (21%)

Query: 35  GMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKA 94
           G+ ++H +  I H +L+  N  ++    L+I DFGL A +A  + TG        + Y+A
Sbjct: 133 GLRYIH-AAGIIHRDLKPGNLAVNEDCELKILDFGL-ARQADSEMTGY----VVTRWYRA 186

Query: 95  PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD-- 152
           PE++      R TQ  D++S G ++ E+I  +  +        + +  + + +G  P   
Sbjct: 187 PEVILNW--MRYTQTVDIWSVGCIMAEMITGKTLFKG--SDHLDQLKEIMKVTGTPPAEF 242

Query: 153 -------------------------TSSLDCAPSIIACMRTCWEEDPELRP 178
                                    +   + +P  +  +      D E R 
Sbjct: 243 VQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRV 293

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.98
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.98
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.98
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.98
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.98
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.98
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.98
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.98
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.97
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.97
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.97
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.97
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.97
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.97
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.97
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.97
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.97
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.97
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.97
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.97
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.97
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.97
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.96
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.96
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.96
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.96
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.96
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.96
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.96
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.96
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.96
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.96
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.96
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.96
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.96
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.95
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.95
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.95
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.95
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.95
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.94
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.94
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.94
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.94
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.93
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.93
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.92
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.92
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.89
d1azsb_	199	Adenylyl cyclase IIC1, domain C2a {Rat (Rattus nor	99.25
d1azsa_	190	Adenylyl cyclase VC1, domain C1a {Dog (Canis famil	99.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.95
d1wc1a_	197	Adenylate cyclase CyaC {Spirulina platensis [TaxId	98.81
d1fx2a_	235	Receptor-type monomeric adenylyl cyclase {Trypanos	98.32
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	88.92
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	85.67
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	83.62

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-36  Score=282.66  Aligned_cols=167  Identities=28%  Similarity=0.488  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||+|||+++++ ||||||+|||++.++.+||+|||+++...............||+.|+|||++.+...
T Consensus       105 ~~~~i~~qi~~gl~yLH~~~iv-HrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  183 (276)
T d1uwha_         105 KLIDIARQTAQGMDYLHAKSII-HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDK  183 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHHhcCCEe-ccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccC
Confidence            3789999999999999999998 999999999999999999999999987654433333456678999999999976543


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCC--CCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPD--TSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~--~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      ..++.++|||||||++|||+||+.||.+.. ....+...+..+. ..|.  .....+++++.++|.+||+.||++|||+.
T Consensus       184 ~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~-~~~~~~~~~~~~~-~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~  261 (276)
T d1uwha_         184 NPYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIFMVGRGY-LSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFP  261 (276)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTTTCC-CHHHHHHHHHHTS-CCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCchhhhhhhHHHHHHHHHCCCCCCCCC-hHHHHHHHHhcCC-CCCcchhccccchHHHHHHHHHHcCCCHhHCcCHH
Confidence            345899999999999999999999997532 2334444444432 2222  22457899999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy1840         182 FVHHKLKEMNAG  193 (423)
Q Consensus       182 ~I~~~L~~i~~~  193 (423)
                      +|++.|+.+...
T Consensus       262 ~il~~Le~l~~~  273 (276)
T d1uwha_         262 QILASIELLARS  273 (276)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999888654

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-34  Score=271.97  Aligned_cols=160  Identities=25%  Similarity=0.418  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .+.++.||+.||.|||+++++ ||||||+||||+.++.+||+|||+++...............||+.|+|||++.+..+ 
T Consensus       136 ~~~~~~qi~~gl~ylH~~~iv-HrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-  213 (299)
T d1ywna1         136 LICYSFQVAKGMEFLASRKCI-HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-  213 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCCc-CCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCC-
Confidence            689999999999999999998 999999999999999999999999987654444444456679999999999988665 


Q ss_pred             CCCCccchHHHHHHHHHHHhCC-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQ-GPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~-~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++|. .||.... ....+...+..+..  +.. +..+++++.+++.+||+.||++|||+.+|
T Consensus       214 --~~~sDiwS~Gvil~ellt~~~~p~~~~~-~~~~~~~~~~~~~~--~~~-~~~~~~~l~~li~~cl~~dP~~Rpt~~ei  287 (299)
T d1ywna1         214 --TIQSDVWSFGVLLWEIFSLGASPYPGVK-IDEEFCRRLKEGTR--MRA-PDYTTPEMYQTMLDCWHGEPSQRPTFSEL  287 (299)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSSTTCC-CSHHHHHHHHHTCC--CCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CcccceeehHHHHHHHHhCCCCCCCCCC-HHHHHHHHHhcCCC--CCC-CccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence              89999999999999999875 5776433 33555566665532  222 23678999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+.+
T Consensus       288 l~~L~~ilq  296 (299)
T d1ywna1         288 VEHLGNLLQ  296 (299)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987754

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-33  Score=270.80  Aligned_cols=160  Identities=27%  Similarity=0.524  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc---ccccccCCccccCCccccC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG---QERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~---~~~~~~gt~~y~APE~l~~  100 (423)
                      .++.++.||+.||.|||+++++ ||||||+||||+.++++||+|||+++.........   ......+|+.|+|||.+.+
T Consensus       129 ~~~~i~~qia~gl~yLH~~~ii-HrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  207 (299)
T d1jpaa_         129 QLVGMLRGIAAGMKYLADMNYV-HRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQY  207 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhhCCCc-cCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhc
Confidence            3789999999999999999998 99999999999999999999999998764332211   1123457889999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      ..+   +.++|||||||++|||+| |+.||.+  .+..++...+..+....+   +..+++++.+|+.+||+.||++|||
T Consensus       208 ~~~---~~~sDvwS~Gvvl~el~t~g~~Pf~~--~~~~~~~~~i~~~~~~~~---~~~~~~~l~~li~~cl~~~P~~RPs  279 (299)
T d1jpaa_         208 RKF---TSASDVWSYGIVMWEVMSYGERPYWD--MTNQDVINAIEQDYRLPP---PMDCPSALHQLMLDCWQKDRNHRPK  279 (299)
T ss_dssp             CCC---CHHHHHHHHHHHHHHHHTTSCCTTTT--CCHHHHHHHHHTTCCCCC---CTTCCHHHHHHHHHHTCSSTTTSCC
T ss_pred             CCC---CcccccccchHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCCCC---CccchHHHHHHHHHHcCCCHhHCcC
Confidence            655   899999999999999998 8999974  456788888877543222   2368999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy1840         180 LRFVHHKLKEMNA  192 (423)
Q Consensus       180 ~~~I~~~L~~i~~  192 (423)
                      +.+|++.|+++.+
T Consensus       280 ~~ei~~~L~~~l~  292 (299)
T d1jpaa_         280 FGQIVNTLDKMIR  292 (299)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=267.17  Aligned_cols=161  Identities=25%  Similarity=0.438  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-ccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      .++.++.||+.||+|||+++++ ||||||+||||+.++.+||+|||+++....... ........||+.|+|||++.++.
T Consensus       111 ~~~~i~~~i~~gl~~lH~~~ii-HrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~  189 (283)
T d1mqba_         111 QLVGMLRGIAAGMKYLANMNYV-HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK  189 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCC
T ss_pred             HHHHHHHHHHHhhhhccccccc-cCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCC
Confidence            3789999999999999999998 999999999999999999999999987643322 12223456788999999998876


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.++|||||||++|||++|..|+.. ..+..++...+..+.  +++. +..++.++.+|+.+||+.||++|||+.+
T Consensus       190 ~---~~~sDI~S~Gvil~el~t~~~~~~~-~~~~~~~~~~i~~~~--~~~~-~~~~~~~l~~li~~cl~~~p~~RPt~~e  262 (283)
T d1mqba_         190 F---TSASDVWSFGIVMWEVMTYGERPYW-ELSNHEVMKAINDGF--RLPT-PMDCPSAIYQLMMQCWQQERARRPKFAD  262 (283)
T ss_dssp             C---CHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHHTTC--CCCC-CTTCBHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             C---CCcccccccHHHHHHHHhCCCCccc-cCCHHHHHHHHhccC--CCCC-chhhHHHHHHHHHHHCcCCHhHCcCHHH
Confidence            5   8999999999999999997666543 456677887777653  2332 2468999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      |++.|+.+..
T Consensus       263 il~~L~~l~~  272 (283)
T d1mqba_         263 IVSILDKLIR  272 (283)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999887654

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=264.77  Aligned_cols=159  Identities=24%  Similarity=0.463  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ++.++.||+.||.|||+++++ ||||||+|||++.++.+||+|||+++........ ......||+.|+|||++.+..+ 
T Consensus       103 ~~~i~~qia~gl~~lH~~~ii-HrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~l~~~~~-  179 (263)
T d1sm2a_         103 LLGMCLDVCEGMAYLEEACVI-HRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT-SSTGTKFPVKWASPEVFSFSRY-  179 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CTTCSGGGEEECGGGCEEECSCC-------------------CTTSCCHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHhhhcccee-ecccchhheeecCCCCeEecccchheeccCCCce-eecceecCcccCChHHhcCCCC-
Confidence            689999999999999999998 9999999999999999999999999865433222 2234568899999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||+|+..|+.. ..+..++...+..+....   .+..+++++.+++.+||+.||++|||+.+|+
T Consensus       180 --~~k~DVwS~Gvil~el~t~~~~~~~-~~~~~~~~~~i~~~~~~~---~p~~~~~~l~~li~~cl~~~p~~Rps~~~il  253 (263)
T d1sm2a_         180 --SSKSDVWSFGVLMWEVFSEGKIPYE-NRSNSEVVEDISTGFRLY---KPRLASTHVYQIMNHCWKERPEDRPAFSRLL  253 (263)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTC-SCCHHHHHHHHHHTCCCC---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             --CchhhhcchHHHHHHHHHCCCCCCC-CCCHHHHHHHHHhcCCCC---CccccCHHHHHHHHHHccCCHhHCcCHHHHH
Confidence              8999999999999999996544432 345677788877753322   1236789999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy1840         185 HKLKEMNA  192 (423)
Q Consensus       185 ~~L~~i~~  192 (423)
                      +.|+++.+
T Consensus       254 ~~L~~i~e  261 (263)
T d1sm2a_         254 RQLAEIAE  261 (263)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998865

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=267.41  Aligned_cols=159  Identities=25%  Similarity=0.480  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ++.++.||+.||+|||+++++ ||||||+||+++.++.+||+|||+++........ .......||+.|+|||++.+..+
T Consensus       111 ~~~i~~qi~~gL~ylH~~~ii-HrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  189 (285)
T d1u59a_         111 VAELLHQVSMGMKYLEEKNFV-HRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKF  189 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHhCCee-cCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCC
Confidence            789999999999999999988 9999999999999999999999999876543322 22234568889999999987665


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||+| |+.||.+  .+..++...+..+...  .. +..+++++.+||.+||+.||++|||+.+
T Consensus       190 ---~~ksDVwS~Gv~l~E~lt~G~~Pf~~--~~~~~~~~~i~~~~~~--~~-p~~~~~~l~~li~~cl~~~p~~RPs~~~  261 (285)
T d1u59a_         190 ---SSRSDVWSYGVTMWEALSYGQKPYKK--MKGPEVMAFIEQGKRM--EC-PPECPPELYALMSDCWIYKWEDRPDFLT  261 (285)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCTTTT--CCTHHHHHHHHTTCCC--CC-CTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             ---CccchhhcchHHHHHHHhCCCCCCCC--CCHHHHHHHHHcCCCC--CC-CCcCCHHHHHHHHHHcCCCHhHCcCHHH
Confidence               899999999999999998 8999975  4457788888776432  22 2368999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      |.+.|+....
T Consensus       262 i~~~L~~~~~  271 (285)
T d1u59a_         262 VEQRMRACYY  271 (285)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998876543

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=273.35  Aligned_cols=158  Identities=24%  Similarity=0.376  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||+|||+++++ ||||||+||+++.++.+||+|||+++...............||+.|+|||++.+..+
T Consensus       165 ~~~~i~~qi~~gl~yLH~~~Ii-HRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~  243 (325)
T d1rjba_         165 DLLCFAYQVAKGMEFLEFKSCV-HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIY  243 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-ETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-eccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCC
Confidence            3789999999999999999988 999999999999999999999999987654443333345567899999999987765


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||.+... ...+...+..+.  +++. +..+++++.+||.+||+.||++|||+.+
T Consensus       244 ---~~~~DiwS~Gvil~emlt~g~~Pf~~~~~-~~~~~~~~~~~~--~~~~-p~~~~~~l~~li~~cl~~dP~~RPt~~e  316 (325)
T d1rjba_         244 ---TIKSDVWSYGILLWEIFSLGVNPYPGIPV-DANFYKLIQNGF--KMDQ-PFYATEEIYIIMQSCWAFDSRKRPSFPN  316 (325)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHTTC--CCCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CcceeccchhHHHHHHHhCCCCCCCCCCH-HHHHHHHHhcCC--CCCC-CCcCCHHHHHHHHHHcCCChhHCcCHHH
Confidence               899999999999999997 8999975433 233444444432  2222 2368999999999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         183 VHHKLKE  189 (423)
Q Consensus       183 I~~~L~~  189 (423)
                      |++.|..
T Consensus       317 i~~~L~~  323 (325)
T d1rjba_         317 LTSFLGC  323 (325)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9998853

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4e-33  Score=263.74  Aligned_cols=159  Identities=26%  Similarity=0.467  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      +++++.||+.||.|||+++++ ||||||+||||+.++.+||+|||+++....... .......|++.|+|||++.+..+ 
T Consensus       111 ~~~i~~qi~~gl~~lH~~~iv-HrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~~~~~~~-  187 (272)
T d1qpca_         111 LLDMAAQIAEGMAFIEERNYI-HRDLRAANILVSDTLSCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTF-  187 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-ECCTTCCCCTTTSCHHHHHHCEE-
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cCccchhheeeecccceeeccccceEEccCCcc-ccccccCCcccccChHHHhCCCC-
Confidence            689999999999999999988 999999999999999999999999987643322 22244578889999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||+||..|+.. ..+..++...+..+..  +.. +..+++++.+|+.+||+.||++|||+.+|+
T Consensus       188 --~~~sDvwS~Gvvl~ellt~~~~~~~-~~~~~~~~~~i~~~~~--~~~-p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~  261 (272)
T d1qpca_         188 --TIKSDVWSFGILLTEIVTHGRIPYP-GMTNPEVIQNLERGYR--MVR-PDNCPEELYQLMRLCWKERPEDRPTFDYLR  261 (272)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHHTTCC--CCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             --CchhhhhhhHHHHHHHHhCCCCCCC-CCCHHHHHHHHHhcCC--CCC-cccChHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence              8999999999999999997665532 3456777777776532  222 246899999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy1840         185 HKLKEMNA  192 (423)
Q Consensus       185 ~~L~~i~~  192 (423)
                      +.|+.+..
T Consensus       262 ~~L~~~ft  269 (272)
T d1qpca_         262 SVLEDFFT  269 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHhhhhhh
Confidence            99887654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=2.6e-33  Score=268.86  Aligned_cols=159  Identities=27%  Similarity=0.481  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .++.++.||+.||+|||+.+++ ||||||+|||+|.++.+||+|||+++...............+++.|+|||.+.+..+
T Consensus       141 ~~~~i~~qi~~gl~ylH~~~iv-HrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  219 (301)
T d1lufa_         141 EQLCIARQVAAGMAYLSERKFV-HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRY  219 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhhhcccCCeE-eeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCC
Confidence            3789999999999999999998 999999999999999999999999876544333333345678889999999988765


Q ss_pred             CCCCCccchHHHHHHHHHHHhCC-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQ-GPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~-~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++|. .||.  ..+..++...+..+..  +.. +..+++++.+|+.+||+.||++|||+.+
T Consensus       220 ---t~ksDVwS~Gvvl~ell~~~~~p~~--~~~~~e~~~~v~~~~~--~~~-p~~~~~~~~~li~~cl~~~P~~RPt~~e  291 (301)
T d1lufa_         220 ---TTESDVWAYGVVLWEIFSYGLQPYY--GMAHEEVIYYVRDGNI--LAC-PENCPLELYNLMRLCWSKLPADRPSFCS  291 (301)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCTTT--TSCHHHHHHHHHTTCC--CCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---ChhhhhccchhhHHHHHccCCCCCC--CCCHHHHHHHHHcCCC--CCC-CccchHHHHHHHHHHcCCChhHCcCHHH
Confidence               89999999999999999986 5675  4567888888887653  222 2468899999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy1840         183 VHHKLKEMN  191 (423)
Q Consensus       183 I~~~L~~i~  191 (423)
                      |++.|+++.
T Consensus       292 v~~~L~~i~  300 (301)
T d1lufa_         292 IHRILQRMC  300 (301)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999998874

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.1e-33  Score=264.37  Aligned_cols=158  Identities=25%  Similarity=0.459  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .+.++.||+.||+|||+++++ ||||||+|||++.++.+||+|||+++........ .......||+.|+|||.+.+..+
T Consensus       109 ~~~i~~qi~~gl~ylH~~~ii-HrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  187 (277)
T d1xbba_         109 IIELVHQVSMGMKYLEESNFV-HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKF  187 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHhhHHhCCcc-cCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCC
Confidence            789999999999999999987 9999999999999999999999999865433222 22234568889999999987665


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |+.||.+  .+..++...+..+..  +.. +..+++++.+||.+||+.||++|||+.+
T Consensus       188 ---~~~sDiwS~Gv~l~ellt~g~~Pf~~--~~~~~~~~~i~~~~~--~~~-p~~~~~~~~~li~~cl~~dp~~RPs~~~  259 (277)
T d1xbba_         188 ---SSKSDVWSFGVLMWEAFSYGQKPYRG--MKGSEVTAMLEKGER--MGC-PAGCPREMYDLMNLCWTYDVENRPGFAA  259 (277)
T ss_dssp             ---EHHHHHHHHHHHHHHHHTTTCCSSTT--CCHHHHHHHHHTTCC--CCC-CTTCCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             ---CchhhhccchhhhhHHhhCCCCCCCC--CCHHHHHHHHHcCCC--CCC-CcccCHHHHHHHHHHcCCCHhHCcCHHH
Confidence               899999999999999997 8999974  456778888877542  222 2468999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy1840         183 VHHKLKEMN  191 (423)
Q Consensus       183 I~~~L~~i~  191 (423)
                      |.+.|+...
T Consensus       260 i~~~L~~~~  268 (277)
T d1xbba_         260 VELRLRNYY  268 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhhCHH
Confidence            988887653

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=4.7e-33  Score=265.31  Aligned_cols=159  Identities=25%  Similarity=0.438  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ++.++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++........ ......|++.|+|||++.+..+ 
T Consensus       117 ~~~i~~qi~~gL~yLH~~~ii-HrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~-  193 (287)
T d1opja_         117 LLYMATQISSAMEYLEKKNFI-HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESLAYNKF-  193 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSE-EETTEEECGGGCCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHHCCcc-cCccccCeEEECCCCcEEEccccceeecCCCCce-eeccccccccccChHHHcCCCC-
Confidence            688999999999999999998 9999999999999999999999999876443222 2234457888999999987765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|..||.. ..+..++...+..+.  ++.. +..+++++.+|+.+||+.||++|||+.+|+
T Consensus       194 --~~k~DiwS~Gv~l~ell~~~~p~~~-~~~~~~~~~~i~~~~--~~~~-~~~~~~~l~~li~~cl~~dP~~Rps~~ei~  267 (287)
T d1opja_         194 --SIKSDVWAFGVLLWEIATYGMSPYP-GIDLSQVYELLEKDY--RMER-PEGCPEKVYELMRACWQWNPSDRPSFAEIH  267 (287)
T ss_dssp             --SHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHHTTC--CCCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             --CchhhhhhHHHHHHHHHhCCCCCCC-cchHHHHHHHHhcCC--CCCC-CccchHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence              8999999999999999997776543 345566666666542  2222 236899999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy1840         185 HKLKEMNA  192 (423)
Q Consensus       185 ~~L~~i~~  192 (423)
                      +.|+.+..
T Consensus       268 ~~L~~~~~  275 (287)
T d1opja_         268 QAFETMFQ  275 (287)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHH
Confidence            99987754

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.9e-33  Score=259.74  Aligned_cols=149  Identities=22%  Similarity=0.293  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++......    .....||+.|+|||++.+..+
T Consensus       107 ~~~~i~~qi~~al~~lH~~~iv-HrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~----~~~~~Gt~~Y~APE~~~~~~~  181 (263)
T d2j4za1         107 RTATYITELANALSYCHSKRVI-HRDIKPENLLLGSAGELKIADFGWSVHAPSSR----RTTLCGTLDYLPPEMIEGRMH  181 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTSCEEECCCCSCSCCCCCC----CEETTEEGGGCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCee-eeeeccccceecCCCCEeecccceeeecCCCc----ccccCCCCcccCHHHHcCCCC
Confidence            3678999999999999999998 99999999999999999999999987654322    235679999999999998765


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|||||||++|||++|+.||..  .+..++...+..+....|    ..+++++.+++.+||+.||++|||+.++
T Consensus       182 ---~~~~DiwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~~L~~dp~~R~t~~ei  252 (263)
T d2j4za1         182 ---DEKVDLWSLGVLCYEFLVGKPPFEA--NTYQETYKRISRVEFTFP----DFVTEGARDLISRLLKHNPSQRPMLREV  252 (263)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHTTCCCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---CchhhhhhHhHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCCCC----ccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence               8999999999999999999999964  456778888877654433    3578999999999999999999999999


Q ss_pred             HHH
Q psy1840         184 HHK  186 (423)
Q Consensus       184 ~~~  186 (423)
                      ++.
T Consensus       253 l~h  255 (263)
T d2j4za1         253 LEH  255 (263)
T ss_dssp             HTC
T ss_pred             HcC
Confidence            863

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.9e-32  Score=263.62  Aligned_cols=177  Identities=18%  Similarity=0.257  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||++......      ....||+.|+|||++.+....
T Consensus       117 ~~~i~~qi~~aL~yLH~~~ii-HrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~------~~~~GT~~Y~APE~~~~~~~~  189 (309)
T d1u5ra_         117 IAAVTHGALQGLAYLHSHNMI-HRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVILAMDEG  189 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCSGGGEEEETTTEEEECCCTTCBSSSSB------CCCCSCGGGCCHHHHTTTTSC
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-ccCCCcceEEECCCCCEEEeecccccccCCC------CccccCccccCHHHHhccCCC
Confidence            679999999999999999998 9999999999999999999999998764321      345799999999999764433


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                      .++.++|||||||++|||++|..||.+  .+..+.+..+..+...  ......+++++.+|+.+||+.||++|||+.+++
T Consensus       190 ~y~~~~DiwSlGvilyel~~g~~Pf~~--~~~~~~~~~i~~~~~~--~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell  265 (309)
T d1u5ra_         190 QYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNESP--ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL  265 (309)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHSCCC--CCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             CcCchhhhhhHHHHHHHHHHCCCCCCC--CCHHHHHHHHHhCCCC--CCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHH
Confidence            458999999999999999999999974  3455666666654332  223346899999999999999999999999998


Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHHhhhcc
Q psy1840         185 HKLKEMNAGLKANIFDNMLAIMEKYAFNL  213 (423)
Q Consensus       185 ~~L~~i~~~~~~~~~d~~~~~~e~~~~~l  213 (423)
                      +.-. +...........+.........++
T Consensus       266 ~Hp~-~~~~~~~~~~~~~~~~~~~~~~~~  293 (309)
T d1u5ra_         266 KHRF-VLRERPPTVIMDLIQRTKDAVREL  293 (309)
T ss_dssp             TCHH-HHSCCCTTHHHHHHHHHHHHHHHS
T ss_pred             hCHH-hcCCCCchhhHHHHHHHHHHHHhh
Confidence            7422 222233334444444443333333

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.5e-33  Score=269.10  Aligned_cols=159  Identities=21%  Similarity=0.390  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ++.++.||+.||.|||+++++ ||||||+|||++.++.+||+|||+++...............||+.|+|||.+.++.+ 
T Consensus       113 ~~~i~~qi~~gl~yLH~~~ii-HrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-  190 (317)
T d1xkka_         113 LLNWCVQIAKGMNYLEDRRLV-HRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY-  190 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHHcCcc-cCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCC-
Confidence            689999999999999999998 999999999999999999999999987654433333344568999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||+| |..||.+  .+..++...+..+..  +.. +..+++++.+|+.+||+.||++|||+.+|
T Consensus       191 --~~~sDvwS~Gvil~el~t~g~~p~~~--~~~~~~~~~i~~~~~--~~~-p~~~~~~~~~li~~cl~~dP~~RPs~~ei  263 (317)
T d1xkka_         191 --THQSDVWSYGVTVWELMTFGSKPYDG--IPASEISSILEKGER--LPQ-PPICTIDVYMIMVKCWMIDADSRPKFREL  263 (317)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTTT--SCGGGHHHHHHHTCC--CCC-CTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --ChhhhhhhHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHcCCC--CCC-CcccCHHHHHHHHHhCCCChhhCcCHHHH
Confidence              899999999999999998 7888874  345566677766542  222 23689999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|..+..
T Consensus       264 l~~l~~~~~  272 (317)
T d1xkka_         264 IIEFSKMAR  272 (317)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998877643

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.7e-33  Score=259.08  Aligned_cols=155  Identities=21%  Similarity=0.473  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      +++++.||++||+|||++|++ ||||||+||+++.++.+||+|||+++....... .......+|+.|+|||.+.+..+ 
T Consensus       102 ~~~i~~qi~~gl~~LH~~~ii-H~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~-  178 (258)
T d1k2pa_         102 LLEMCKDVCEAMEYLESKQFL-HRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPPEVLMYSKF-  178 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTBC-CSCCSGGGEEECTTCCEEECCCSSCCBCSSSSC-CCCCCSCCCGGGCCHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHhhcCcc-cccccceeEEEcCCCcEEECcchhheeccCCCc-eeecccCCCCCcCCcHHhcCCCC-
Confidence            689999999999999999988 999999999999999999999999976543322 22334578899999999987765 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||+| |+.||..  .+..++...+..+...  .. +..+++++.++|.+||+.||++|||+.+|
T Consensus       179 --~~ksDiwS~G~~l~el~t~g~~Pf~~--~~~~~~~~~i~~~~~~--~~-p~~~~~~l~~li~~cl~~dP~~RPt~~ei  251 (258)
T d1k2pa_         179 --SSKSDIWAFGVLMWEIYSLGKMPYER--FTNSETAEHIAQGLRL--YR-PHLASEKVYTIMYSCWHEKADERPTFKIL  251 (258)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTTT--SCHHHHHHHHHTTCCC--CC-CTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred             --CcceeecccchhhHhHHhcCCCCCCC--CCHHHHHHHHHhCCCC--CC-cccccHHHHHHHHHHccCCHhHCcCHHHH
Confidence              899999999999999998 7889974  5678888888775432  22 24688999999999999999999999999


Q ss_pred             HHHHHH
Q psy1840         184 HHKLKE  189 (423)
Q Consensus       184 ~~~L~~  189 (423)
                      ++.|.+
T Consensus       252 l~~L~d  257 (258)
T d1k2pa_         252 LSNILD  257 (258)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            998754

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-33  Score=261.95  Aligned_cols=155  Identities=23%  Similarity=0.313  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++...............||+.|+|||++.+..+ 
T Consensus       105 ~~~i~~qi~~al~ylH~~~Ii-HrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~-  182 (271)
T d1nvra_         105 AQRFFHQLMAGVVYLHGIGIT-HRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREF-  182 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSB-
T ss_pred             HHHHHHHHHHHHHHHHHcCCc-cCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCC-
Confidence            578999999999999999988 999999999999999999999999987654433333456789999999999987653 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                       ++.++||||+||++|||++|+.||........... .........+  ....+++++.+|+.+||+.||++|||+.+++
T Consensus       183 -~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~-~~~~~~~~~~--~~~~~s~~~~~li~~~L~~dP~~R~t~~eil  258 (271)
T d1nvra_         183 -HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYS-DWKEKKTYLN--PWKKIDSAPLALLHKILVENPSARITIPDIK  258 (271)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHH-HHHTTCTTST--TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             -CCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHH-HHhcCCCCCC--ccccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence             36789999999999999999999975443333332 2222222211  1235789999999999999999999999986


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      +
T Consensus       259 ~  259 (271)
T d1nvra_         259 K  259 (271)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-32  Score=260.88  Aligned_cols=159  Identities=22%  Similarity=0.448  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||.|||+++++ ||||||+||+++.++.+||+|||+++....... .......||+.|+|||.+.+..+
T Consensus       109 ~~~~~~~qi~~gl~ylH~~~ii-HrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~-~~~~~~~gt~~y~apE~l~~~~~  186 (273)
T d1mp8a_         109 SLILYAYQLSTALAYLESKRFV-HRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY-YKASKGKLPIKWMAPESINFRRF  186 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEEEETTEEEECC--------------------CCGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhhhhcccCee-ccccchhheeecCCCcEEEccchhheeccCCcc-eeccceecCcccchhhHhccCCC
Confidence            3689999999999999999998 999999999999999999999999986543322 22244567889999999987665


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||..  .+..++...+..+...  +. +..+++++.+||.+||+.||++|||+.+
T Consensus       187 ---~~~~DiwSlGvil~e~lt~g~~P~~~--~~~~~~~~~i~~~~~~--~~-~~~~~~~~~~li~~cl~~dp~~Rps~~e  258 (273)
T d1mp8a_         187 ---TSASDVWMFGVCMWEILMHGVKPFQG--VKNNDVIGRIENGERL--PM-PPNCPPTLYSLMTKCWAYDPSRRPRFTE  258 (273)
T ss_dssp             ---SHHHHHHHHHHHHHHHHTTSCCTTTT--CCGGGHHHHHHTTCCC--CC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CCccccccchHHHHHHHhcCCCCCCC--CCHHHHHHHHHcCCCC--CC-CCCCCHHHHHHHHHHcCCCHhHCcCHHH
Confidence               899999999999999998 7889874  4556777777765432  22 3368999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      |++.|+.+..
T Consensus       259 i~~~L~~i~~  268 (273)
T d1mp8a_         259 LKAQLSTILE  268 (273)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987754

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-32  Score=260.58  Aligned_cols=153  Identities=17%  Similarity=0.284  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+..+
T Consensus       117 ~~~~i~~qi~~aL~yLH~~~ii-HrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~--~~~~~~gt~~Y~aPE~~~~~~~  193 (293)
T d1yhwa1         117 QIAAVCRECLQALEFLHSNQVI-HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAY  193 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCCSCGGGCCHHHHSSSCB
T ss_pred             HHHHHHHHHHHHHHHHHHCCCc-ccCCcHHHeEECCCCcEeeccchhheeeccccc--cccccccCCCccChhhhcCCCC
Confidence            3678999999999999999988 999999999999999999999999987643322  2245679999999999988765


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|||||||++|||++|+.||.+  .+..+.+..+......... .+..+++++.++|.+||+.||++|||+.++
T Consensus       194 ---~~~~DiwSlGvilyemltG~~Pf~~--~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~R~s~~ei  267 (293)
T d1yhwa1         194 ---GPKVDIWSLGIMAIEMIEGEPPYLN--ENPLRALYLIATNGTPELQ-NPEKLSAIFRDFLNRCLDMDVEKRGSAKEL  267 (293)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCTTTT--SCHHHHHHHHHHHCSCCCS-SGGGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             ---CchhceehHhHHHHHHhhCCCCCCC--CCHHHHHHHHHhCCCCCCC-CcccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence               8999999999999999999999974  3344445444433222222 224678999999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       268 l~  269 (293)
T d1yhwa1         268 LQ  269 (293)
T ss_dssp             TT
T ss_pred             hc
Confidence            75

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-32  Score=258.32  Aligned_cols=158  Identities=26%  Similarity=0.452  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCccc-ccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETG-QERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~-~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ++.++.||+.||.|||+++++ ||||||+||+++.++.+||+|||+++......... ......++..|+|||.+.+..+
T Consensus       113 ~~~~~~qi~~gl~ylH~~~ii-HrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  191 (273)
T d1u46a_         113 LSRYAVQVAEGMGYLESKRFI-HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTF  191 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHhhhCCEe-eeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCC
Confidence            689999999999999999987 99999999999999999999999998764433222 2234457778999999988765


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||.  ..+..++...+..... +++. ...+++++.+|+.+||+.||++|||+.+
T Consensus       192 ---~~~~Di~S~Gvil~emlt~G~~Pf~--~~~~~~~~~~i~~~~~-~~~~-~~~~~~~l~~li~~cl~~dp~~RPt~~e  264 (273)
T d1u46a_         192 ---SHASDTWMFGVTLWEMFTYGQEPWI--GLNGSQILHKIDKEGE-RLPR-PEDCPQDIYNVMVQCWAHKPEDRPTFVA  264 (273)
T ss_dssp             ---EHHHHHHHHHHHHHHHHTTSCCTTT--TCCHHHHHHHHHTSCC-CCCC-CTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CcchhhhhhHHHHHHHHhCCCCCCC--CcCHHHHHHHHHhCCC-CCCC-cccccHHHHHHHHHHcCCChhHCcCHHH
Confidence               899999999999999998 899997  4566777777765432 3322 2468899999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1840         183 VHHKLKEM  190 (423)
Q Consensus       183 I~~~L~~i  190 (423)
                      |.+.|++.
T Consensus       265 i~~~L~~~  272 (273)
T d1u46a_         265 LRDFLLEA  272 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99988765

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-32  Score=259.21  Aligned_cols=150  Identities=18%  Similarity=0.359  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHhCC-----CeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSE-----IISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLR   99 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~-----ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~   99 (423)
                      ...++.||+.||.|||+.+     ++ ||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.
T Consensus       111 ~~~i~~qi~~al~ylH~~~~~~~~Ii-HrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~--~~~~~~gt~~Y~APE~l~  187 (269)
T d2java1         111 VLRVMTQLTLALKECHRRSDGGHTVL-HRDLKPANVFLDGKQNVKLGDFGLARILNHDTS--FAKAFVGTPYYMSPEQMN  187 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC----------CCGGGEEECTTSCEEECCHHHHHHC-------------CCCSCCCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCEE-eCcCchhhcCcCCCCcEEEeeccceeecccCCC--ccccCCCCcccCCHHHHc
Confidence            6789999999999999876     66 999999999999999999999999987543221  224567899999999998


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         100 QPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       100 ~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      +..+   +.++|||||||++|||++|+.||..  .+..++...+..+....   .+..+++++.+|+.+||+.||.+|||
T Consensus       188 ~~~~---~~~~DIwSlGvilyel~tg~~Pf~~--~~~~~~~~~i~~~~~~~---~~~~~s~~l~~li~~~L~~dp~~Rps  259 (269)
T d2java1         188 RMSY---NEKSDIWSLGCLLYELCALMPPFTA--FSQKELAGKIREGKFRR---IPYRYSDELNEIITRMLNLKDYHRPS  259 (269)
T ss_dssp             TCCC---CHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHTCCCC---CCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             CCCC---ChHHHHHhhCHHHHHHhhCCCCCCC--CCHHHHHHHHHcCCCCC---CCcccCHHHHHHHHHHcCCChhHCcC
Confidence            7665   8999999999999999999999974  56677888887764332   22368899999999999999999999


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       260 ~~ell~  265 (269)
T d2java1         260 VEEILE  265 (269)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999875

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.8e-32  Score=257.87  Aligned_cols=160  Identities=29%  Similarity=0.465  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ..+.++.||+.||+|||+.+++ ||||||+|||++.++.+||+|||+++...............+++.|+|||.+.++.+
T Consensus       136 ~~~~~~~qi~~al~ylH~~~iv-HrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y  214 (299)
T d1fgka_         136 DLVSCAYQVARGMEYLASKKCI-HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY  214 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHhhhCCEE-eeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCC
Confidence            4789999999999999999998 999999999999999999999999987655444444455678889999999987765


Q ss_pred             CCCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                         +.++|||||||++|||++ |..||.+  .+..++...+..+.  ++.. +..+++++.+|+.+||+.||++|||+.+
T Consensus       215 ---~~k~DiwS~Gvvl~ell~~g~~p~~~--~~~~~~~~~i~~~~--~~~~-p~~~~~~l~~li~~cl~~dP~~Rps~~e  286 (299)
T d1fgka_         215 ---THQSDVWSFGVLLWEIFTLGGSPYPG--VPVEELFKLLKEGH--RMDK-PSNCTNELYMMMRDCWHAVPSQRPTFKQ  286 (299)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTSCCSSTT--CCHHHHHHHHHTTC--CCCC-CSSCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---CchhhhHHhHHHHHHhccCCCCCCCC--CCHHHHHHHHHcCC--CCCC-CccchHHHHHHHHHHccCCHhHCcCHHH
Confidence               999999999999999998 6888863  45667777777653  2322 2468899999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy1840         183 VHHKLKEMNA  192 (423)
Q Consensus       183 I~~~L~~i~~  192 (423)
                      |++.|+++.+
T Consensus       287 il~~L~~i~a  296 (299)
T d1fgka_         287 LVEDLDRIVA  296 (299)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=253.73  Aligned_cols=149  Identities=22%  Similarity=0.375  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhCC--CeeecCCCCCCEEEc-CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSE--IISHGNLRSSNCLID-SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~--ii~HrDLkp~NILld-~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.||+.||+|||+++  ++ ||||||+|||++ .++.+||+|||+++.....    ......||+.|+|||++.+.
T Consensus       114 ~~~~~~qi~~gl~yLH~~~~~Ii-HrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~----~~~~~~GT~~Y~aPE~~~~~  188 (270)
T d1t4ha_         114 LRSWCRQILKGLQFLHTRTPPII-HRDLKCDNIFITGPTGSVKIGDLGLATLKRAS----FAKAVIGTPEFMAPEMYEEK  188 (270)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCC-CSCCCGGGEEESSTTSCEEECCTTGGGGCCTT----SBEESCSSCCCCCGGGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEE-eCCcChhhceeeCCCCCEEEeecCcceeccCC----ccCCcccCccccCHHHhCCC
Confidence            5789999999999999998  77 999999999996 5789999999999764322    22456899999999998763


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                          ++.++|||||||++|||++|+.||.+. ....++...+..+.  .|......+++++.+++.+||+.||++|||+.
T Consensus       189 ----~~~~~DIwSlGvilyel~~g~~Pf~~~-~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~  261 (270)
T d1t4ha_         189 ----YDESVDVYAFGMCMLEMATSEYPYSEC-QNAAQIYRRVTSGV--KPASFDKVAIPEVKEIIEGCIRQNKDERYSIK  261 (270)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHSSCTTTTC-SSHHHHHHHHTTTC--CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             ----CCCcCchhhHHHHHHHHHHCCCCCCCc-ccHHHHHHHHHcCC--CCcccCccCCHHHHHHHHHHccCCHhHCcCHH
Confidence                389999999999999999999999743 34556666666543  23223345788999999999999999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      ++++
T Consensus       262 ell~  265 (270)
T d1t4ha_         262 DLLN  265 (270)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            9875

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-32  Score=259.53  Aligned_cols=156  Identities=19%  Similarity=0.255  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-  102 (423)
                      ....++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.... 
T Consensus       111 ~~~~i~~qi~~gL~ylH~~~iv-HrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~--~~~~~~~Gt~~y~APE~l~~~~~  187 (288)
T d2jfla1         111 QIQVVCKQTLDALNYLHDNKII-HRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--QRRDSFIGTPYWMAPEVVMCETS  187 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECHHHH--HHHTCCCSCCTTCCHHHHTTCST
T ss_pred             HHHHHHHHHHHHHHHHHHCCEE-EeecChhheeECCCCCEEEEechhhhccCCCc--ccccccccccccCCHHHHhhccc
Confidence            3678999999999999999988 99999999999999999999999987543211  1224567999999999986432 


Q ss_pred             -CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 -LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 -~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                       ...++.++|||||||++|||++|+.||.+.  +..++...+..+....... +..+++++.+|+.+||+.||++|||+.
T Consensus       188 ~~~~y~~k~DiwSlGvilyemltg~~Pf~~~--~~~~~~~~i~~~~~~~~~~-~~~~s~~~~~li~~~L~~dp~~R~t~~  264 (288)
T d2jfla1         188 KDRPYDYKADVWSLGITLIEMAEIEPPHHEL--NPMRVLLKIAKSEPPTLAQ-PSRWSSNFKDFLKKCLEKNVDARWTTS  264 (288)
T ss_dssp             TTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS--CGGGHHHHHHHSCCCCCSS-GGGSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCChhhhHHHHHHHHHHHhhCCCCCCCC--CHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHHHHccCChhHCcCHH
Confidence             123489999999999999999999999743  4556666666654333222 236789999999999999999999999


Q ss_pred             HHHH
Q psy1840         182 FVHH  185 (423)
Q Consensus       182 ~I~~  185 (423)
                      ++++
T Consensus       265 ell~  268 (288)
T d2jfla1         265 QLLQ  268 (288)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            9876

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-32  Score=259.12  Aligned_cols=151  Identities=18%  Similarity=0.265  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||+|||+.|++ ||||||+|||++.++.+||+|||+++...............||+.|+|||++.+..+ 
T Consensus       110 ~~~~~~qi~~al~ylH~~~ii-HrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~-  187 (288)
T d1uu3a_         110 TRFYTAEIVSALEYLHGKGII-HRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSA-  187 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCC-
T ss_pred             HHHHHHHHHHHHHhhccccEE-cCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCC-
Confidence            578999999999999999998 999999999999999999999999987654433333455679999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVH  184 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~  184 (423)
                        +.++|||||||++|||++|+.||..  .+..++...+..+....|    ..+++++.+||.+||+.||++|||+.++.
T Consensus       188 --~~~~DiwSlGvilyell~g~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~~L~~dP~~R~t~~e~~  259 (288)
T d1uu3a_         188 --CKSSDLWALGCIIYQLVAGLPPFRA--GNEYLIFQKIIKLEYDFP----EKFFPKARDLVEKLLVLDATKRLGCEEME  259 (288)
T ss_dssp             --CHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHTTCCCCC----TTCCHHHHHHHHTTSCSSGGGSTTSGGGT
T ss_pred             --CcccceehhhHHHHHHhhCCCCCCC--cCHHHHHHHHHcCCCCCC----ccCCHHHHHHHHHHccCCHhHCcCHHHHc
Confidence              8999999999999999999999974  456777788877654333    35789999999999999999999999875


Q ss_pred             H
Q psy1840         185 H  185 (423)
Q Consensus       185 ~  185 (423)
                      .
T Consensus       260 ~  260 (288)
T d1uu3a_         260 G  260 (288)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.6e-32  Score=255.84  Aligned_cols=161  Identities=25%  Similarity=0.441  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .++.++.||+.||+|||+++++ ||||||+|||||.++++||+|||+++....... .......+|+.|+|||.+..+.+
T Consensus       114 ~~~~i~~~i~~gl~~LH~~~iv-H~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~  191 (285)
T d1fmka3         114 QLVDMAAQIASGMAYVERMNYV-HRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAPEAALYGRF  191 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhee-cccccceEEEECCCCcEEEcccchhhhccCCCc-eeeccccccccccChHHHhCCCC
Confidence            3789999999999999999998 999999999999999999999999986543322 22234568899999999987765


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|||||||++|||++|..|+.. .....+++..+..+.  +++. ...+++++.+++.+||+.||++||++.+|
T Consensus       192 ---~~ksDI~S~Giil~el~t~~~p~~~-~~~~~~~~~~i~~~~--~~~~-~~~~~~~l~~li~~cl~~dP~~Rps~~~i  264 (285)
T d1fmka3         192 ---TIKSDVWSFGILLTELTTKGRVPYP-GMVNREVLDQVERGY--RMPC-PPECPESLHDLMCQCWRKEPEERPTFEYL  264 (285)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHHTTC--CCCC-CTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---CcHHhhhcchHHHHHHHhCCCCCCC-CCCHHHHHHHHHhcC--CCCC-CcccCHHHHHHHHHHcccCHhHCcCHHHH
Confidence               8999999999999999997766543 345677777777653  2222 34689999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy1840         184 HHKLKEMNAG  193 (423)
Q Consensus       184 ~~~L~~i~~~  193 (423)
                      ++.|+.....
T Consensus       265 ~~~L~~~~~~  274 (285)
T d1fmka3         265 QAFLEDYFTS  274 (285)
T ss_dssp             HHHHHTTTSC
T ss_pred             HHHHhhhhcC
Confidence            9888765543

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.9e-31  Score=256.39  Aligned_cols=153  Identities=22%  Similarity=0.239  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc---CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID---SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld---~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.||+.||+|||++|++ ||||||+||++.   .++.+||+|||+++......   ......||+.|+|||++.+.
T Consensus       109 ~~~~~~qi~~al~ylH~~~ii-HrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~---~~~~~~GT~~y~APE~~~~~  184 (307)
T d1a06a_         109 ASRLIFQVLDAVKYLHDLGIV-HRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS---VLSTACGTPGYVAPEVLAQK  184 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEESSSSTTCCEEECCC---------------------CTTSCHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhhhceee-eEEecccceeecccCCCceEEEeccceeEEccCCC---eeeeeeeCccccCcHHHcCC
Confidence            678999999999999999998 999999999995   57899999999997653222   22456799999999999887


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .+   +.++|||||||++|||++|..||.+  ....++...+..+....+......+++++.+++.+||+.||++|||+.
T Consensus       185 ~~---~~~~DiwSlGvilyell~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  259 (307)
T d1a06a_         185 PY---SKAVDCWSIGVIAYILLCGYPPFYD--ENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCE  259 (307)
T ss_dssp             CC---CTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CC---CcHHHhhhhhHHHHHHHhCCCCCCC--CCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHH
Confidence            65   8999999999999999999999974  456677777777665544444457899999999999999999999999


Q ss_pred             HHHHH
Q psy1840         182 FVHHK  186 (423)
Q Consensus       182 ~I~~~  186 (423)
                      ++++.
T Consensus       260 eil~h  264 (307)
T d1a06a_         260 QALQH  264 (307)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            99874

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-31  Score=255.88  Aligned_cols=162  Identities=23%  Similarity=0.421  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccCCccccCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~  101 (423)
                      .+++++.|++.||.|||+.+++ ||||||+|||+++++.+||+|||+++........  .......||+.|+|||.+...
T Consensus       131 ~~~~i~~qia~gL~~lH~~~ii-HrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  209 (311)
T d1r0pa_         131 DLIGFGLQVAKGMKFLASKKFV-HRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ  209 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhhcccCcc-cCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcC
Confidence            4789999999999999999998 9999999999999999999999999865433222  122345688999999999876


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      .+   +.++||||||+++|||++|..||... .+..++...+..+..  +.. +..+++++.+||.+||+.||++||++.
T Consensus       210 ~~---~~ksDI~SfGivl~El~t~~~p~~~~-~~~~~~~~~i~~g~~--~~~-p~~~~~~l~~li~~cl~~dP~~RPs~~  282 (311)
T d1r0pa_         210 KF---TTKSDVWSFGVLLWELMTRGAPPYPD-VNTFDITVYLLQGRR--LLQ-PEYCPDPLYEVMLKCWHPKAEMRPSFS  282 (311)
T ss_dssp             CC---CHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHHHTTCC--CCC-CTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CC---CChhHhhhhHHHHHHHHHCCCCCCCC-CCHHHHHHHHHcCCC--CCC-cccCcHHHHHHHHHHcCCCHhHCcCHH
Confidence            55   99999999999999999988887642 344556666666542  322 246889999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy1840         182 FVHHKLKEMNAG  193 (423)
Q Consensus       182 ~I~~~L~~i~~~  193 (423)
                      +|++.|+.+...
T Consensus       283 ei~~~L~~i~~~  294 (311)
T d1r0pa_         283 ELVSRISAIFST  294 (311)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999888754

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=2.8e-31  Score=251.43  Aligned_cols=163  Identities=21%  Similarity=0.326  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCc-ccccccccCCccccCCccccCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDE-TGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~-~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ....++.||+.||+|||++|++ ||||||+|||++.++..+++|||.+........ ........||+.|+|||++.+..
T Consensus       112 ~~~~i~~qi~~al~~lH~~~ii-HrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~  190 (277)
T d1o6ya_         112 RAIEVIADACQALNFSHQNGII-HRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDS  190 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc-CccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCC
Confidence            3689999999999999999998 999999999999999999999999765433222 22334567999999999998765


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-CHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-DLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-t~~  181 (423)
                      +   +.++|||||||++|||++|+.||.+  .+..++...+....+..+......+++++.+++.+||+.||++|| |+.
T Consensus       191 ~---~~~~DiwSlGvilyelltG~~Pf~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~  265 (277)
T d1o6ya_         191 V---DARSDVYSLGCVLYEVLTGEPPFTG--DSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAA  265 (277)
T ss_dssp             C---CHHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHH
T ss_pred             C---CcceecccchHHHHHHHhCCCCCCC--cCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHH
Confidence            5   8999999999999999999999974  455666666666555555444567899999999999999999999 899


Q ss_pred             HHHHHHHHHhh
Q psy1840         182 FVHHKLKEMNA  192 (423)
Q Consensus       182 ~I~~~L~~i~~  192 (423)
                      ++.+.|.++..
T Consensus       266 ~l~~~l~r~~n  276 (277)
T d1o6ya_         266 EMRADLVRVHN  276 (277)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99998887754

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-31  Score=254.07  Aligned_cols=159  Identities=26%  Similarity=0.483  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          23 IGSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        23 ~~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ..+++++.|++.||.|||+++++ ||||||+|||++.++++||+|||+++...............+++.|+|||.+.+..
T Consensus       133 ~~~~~i~~~ia~gl~~LH~~~iv-HrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~  211 (308)
T d1p4oa_         133 SKMIQMAGEIADGMAYLNANKFV-HRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV  211 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCB-CSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCee-eceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCC
Confidence            34789999999999999999998 99999999999999999999999998765444333344556889999999998876


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCC-CCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQ-GPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR  181 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~-~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~  181 (423)
                      +   +.++|||||||++|||+||. .||.  ..+..++...+..+..  +.. +..+++.+.++|.+||+.||++|||+.
T Consensus       212 ~---~~~~Dv~S~G~il~El~t~~~~p~~--~~~~~~~~~~i~~~~~--~~~-p~~~~~~l~~li~~cl~~~P~~RPs~~  283 (308)
T d1p4oa_         212 F---TTYSDVWSFGVVLWEIATLAEQPYQ--GLSNEQVLRFVMEGGL--LDK-PDNCPDMLFELMRMCWQYNPKMRPSFL  283 (308)
T ss_dssp             C---CHHHHHHHHHHHHHHHHHTSCCTTT--TSCHHHHHHHHHTTCC--CCC-CTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             C---CcccccccHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHhCCC--CCC-cccchHHHHHHHHHHcCCChhHCcCHH
Confidence            5   88999999999999999985 6675  4567788888877543  222 236889999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy1840         182 FVHHKLKEM  190 (423)
Q Consensus       182 ~I~~~L~~i  190 (423)
                      +|++.|++.
T Consensus       284 ~il~~L~~~  292 (308)
T d1p4oa_         284 EIISSIKEE  292 (308)
T ss_dssp             HHHHHHGGG
T ss_pred             HHHHHHHHh
Confidence            999887654

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=248.50  Aligned_cols=154  Identities=24%  Similarity=0.530  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      .++++.||+.||.|||+.+++ ||||||+||+++.++.+||+|||+++.....     .....++..|+|||.+.+..+ 
T Consensus       105 ~~~i~~~i~~al~ylH~~~iv-H~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~-----~~~~~~~~~y~aPE~l~~~~~-  177 (262)
T d1byga_         105 LLKFSLDVCEAMEYLEGNNFV-HRDLAARNVLVSEDNVAKVSDFGLTKEASST-----QDTGKLPVKWTAPEALREKKF-  177 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEECTTSCEEECCCCC-----------------CCTTTSCHHHHHHCCC-
T ss_pred             HHHHHHHHHhhccccccCcee-ccccchHhheecCCCCEeecccccceecCCC-----CccccccccCCChHHHhCCCC-
Confidence            789999999999999999998 9999999999999999999999998764322     133467788999999987655 


Q ss_pred             CCCCccchHHHHHHHHHHHh-CCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIG-RQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~ellt-g~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++ |..||..  .+..++...+..+  .+|..+ ..+++++.+|+.+||+.||.+|||+.+|
T Consensus       178 --t~~sDIwSfG~il~el~t~~~~p~~~--~~~~~~~~~i~~~--~~~~~~-~~~~~~~~~li~~cl~~dP~~Rps~~~l  250 (262)
T d1byga_         178 --STKSDVWSFGILLWEIYSFGRVPYPR--IPLKDVVPRVEKG--YKMDAP-DGCPPAVYEVMKNCWHLDAAMRPSFLQL  250 (262)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCSCTT--SCGGGHHHHHTTT--CCCCCC-TTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --ChHHHHHhHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHcC--CCCCCC-ccCCHHHHHHHHHHcccCHhHCcCHHHH
Confidence              999999999999999998 6777763  4556777777664  333333 3678999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+.+..
T Consensus       251 ~~~L~~i~~  259 (262)
T d1byga_         251 REQLEHIKT  259 (262)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988764

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.3e-31  Score=253.27  Aligned_cols=162  Identities=22%  Similarity=0.335  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      .++.++.||+.||+|||+++++ ||||||+||+++.++.+|++|||+++...............||+.|+|||.+.+..+
T Consensus       146 ~~~~~~~qi~~gl~~LH~~~iv-HrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  224 (311)
T d1t46a_         146 DLLSFSYQVAKGMAFLASKNCI-HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVY  224 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCee-ecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCC
Confidence            3689999999999999999998 999999999999999999999999987655444444455678999999999987655


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                         +.++|||||||++|||+|+..|+.........+...+..+.  ++.. +..+++++.+||.+||+.||++|||+.+|
T Consensus       225 ---~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~--~~~~-~~~~~~~l~~Li~~cl~~dP~~RPs~~~i  298 (311)
T d1t46a_         225 ---TFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGF--RMLS-PEHAPAEMYDIMKTCWDADPLKRPTFKQI  298 (311)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTC--CCCC-CTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             ---CCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCC--CCCC-cccccHHHHHHHHHHcCCChhHCcCHHHH
Confidence               99999999999999999955444333333344444555442  2222 23578999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy1840         184 HHKLKEMNA  192 (423)
Q Consensus       184 ~~~L~~i~~  192 (423)
                      ++.|+++..
T Consensus       299 l~~L~~~i~  307 (311)
T d1t46a_         299 VQLIEKQIS  307 (311)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999987544

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5e-31  Score=253.73  Aligned_cols=160  Identities=29%  Similarity=0.474  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ++.++.||+.||.|||+.+++ ||||||+|||++.++.+||+|||+++......   ......+|..|+|||.+.+..+ 
T Consensus       129 ~~~~~~qia~gl~~lH~~~ii-HrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~---~~~~~~gt~~y~aPE~l~~~~~-  203 (309)
T d1fvra_         129 LLHFAADVARGMDYLSQKQFI-HRDLAARNILVGENYVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVY-  203 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECGGGCEEECCTTCEESSCEEC---CC----CCTTTCCHHHHHHCEE-
T ss_pred             HHHHHHHHHHHHHhhhcCCcc-ccccccceEEEcCCCceEEccccccccccccc---cccceecCCcccchHHhccCCC-
Confidence            789999999999999999998 99999999999999999999999987543221   1234568889999999987765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQG-PWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~-Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        +.++|||||||++|||++|.. ||.  ..+..++...+..+.  ++.. +..+++++.+||.+||+.||++|||+.+|
T Consensus       204 --~~~sDvwSfGvil~ell~~~~~p~~--~~~~~~~~~~i~~~~--~~~~-~~~~~~~~~~li~~cl~~dP~~RPs~~ei  276 (309)
T d1fvra_         204 --TTNSDVWSYGVLLWEIVSLGGTPYC--GMTCAELYEKLPQGY--RLEK-PLNCDDEVYDLMRQCWREKPYERPSFAQI  276 (309)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCTTT--TCCHHHHHHHGGGTC--CCCC-CTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CccceeehhHHHHHHHHhcCCCCCC--CCCHHHHHHHHHhcC--CCCC-CccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence              899999999999999999765 665  456788888887753  2332 24689999999999999999999999999


Q ss_pred             HHHHHHHhhhcCC
Q psy1840         184 HHKLKEMNAGLKA  196 (423)
Q Consensus       184 ~~~L~~i~~~~~~  196 (423)
                      ++.|+++....+.
T Consensus       277 l~~L~~i~~~~~~  289 (309)
T d1fvra_         277 LVSLNRMLEERKT  289 (309)
T ss_dssp             HHHHHHHHHSSSC
T ss_pred             HHHHHHHHhcCcC
Confidence            9999888765443

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.97  E-value=7.4e-31  Score=256.90  Aligned_cols=153  Identities=17%  Similarity=0.295  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc--CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID--SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld--~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++  .++.+||+|||+++......   ......||+.|+|||++.+..
T Consensus       129 ~~~i~~qi~~aL~ylH~~~ii-HRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~---~~~~~~gt~~y~aPE~~~~~~  204 (352)
T d1koba_         129 VINYMRQACEGLKHMHEHSIV-HLDIKPENIMCETKKASSVKIIDFGLATKLNPDE---IVKVTTATAEFAAPEIVDREP  204 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS---CEEEECSSGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHCCee-ecccccccccccccCCCeEEEeecccceecCCCC---ceeeccCcccccCHHHHcCCC
Confidence            578999999999999999998 999999999998  67899999999998764332   224567899999999998876


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.++||||+||++|||++|..||.+  .+..+++..+..+....+......+++++.+||.+||+.||.+|||+.+
T Consensus       205 ~---~~~~DiwSlGvilyelltG~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e  279 (352)
T d1koba_         205 V---GFYTDMWAIGVLGYVLLSGLSPFAG--EDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHD  279 (352)
T ss_dssp             B---CHHHHHHHHHHHHHHHHHSCCSSCC--SSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             C---CCccchHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            5   8999999999999999999999974  4567778888776655555445578999999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       280 il~H  283 (352)
T d1koba_         280 ALEH  283 (352)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            9763

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.97  E-value=7e-31  Score=256.89  Aligned_cols=153  Identities=19%  Similarity=0.304  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc--CCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID--SRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld--~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++  .++.+||+|||+++......   ......||+.|+|||++.+..
T Consensus       126 ~~~i~~qi~~aL~ylH~~~ii-HrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~---~~~~~~gT~~Y~aPEv~~~~~  201 (350)
T d1koaa2         126 AVEYMRQVCKGLCHMHENNYV-HLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ---SVKVTTGTAEFAAPEVAEGKP  201 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS---CEEEECSCTTTCCHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCe-eeeechhHeeeccCCCCeEEEeecchheeccccc---ccceecCcccccCHHHHcCCC
Confidence            678999999999999999998 999999999995  46889999999998654332   224567899999999998876


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.++|||||||++|||++|+.||.+  .+..++...+..+....+......+++++.+||.+||+.||++|||+.+
T Consensus       202 ~---~~~~DiwSlGvilyell~G~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e  276 (350)
T d1koaa2         202 V---GYYTDMWSVGVLSYILLSGLSPFGG--ENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQ  276 (350)
T ss_dssp             B---CHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             C---ChhHhhhhhhHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            5   8999999999999999999999973  4667788888776554444333467899999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       277 il~h  280 (350)
T d1koaa2         277 ALEH  280 (350)
T ss_dssp             HHHS
T ss_pred             HhcC
Confidence            9874

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-30  Score=250.67  Aligned_cols=149  Identities=18%  Similarity=0.281  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.+|.+||+|||+++.......  .....+||+.|+|||++.+..+ 
T Consensus       107 ~~~~~~qil~al~ylH~~~ii-HRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~--~~~~~~GT~~Y~aPE~~~~~~y-  182 (337)
T d1o6la_         107 ARFYGAEIVSALEYLHSRDVV-YRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDY-  182 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--CBCCCEECGGGCCGGGGSSSCB-
T ss_pred             HHHHHHHHhhhhhhhhhcCcc-ccccCHHHeEecCCCCEEEeecccccccccCCc--ccccceeCHHHhhhhhccCCCC-
Confidence            457889999999999999998 999999999999999999999999986543222  2345689999999999998766 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC-----
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD-----  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt-----  179 (423)
                        +.++||||+||++|||++|+.||.+  .+..++...+..+....|    ..+++++.+||.+||+.||.+||+     
T Consensus       183 --~~~~DiwSlGvilyeml~G~~pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~dli~~~L~~dP~~R~~~~~~~  254 (337)
T d1o6la_         183 --GRAVDWWGLGVVMYEMMCGRLPFYN--QDHERLFELILMEEIRFP----RTLSPEAKSLLAGLLKKDPKQRLGGGPSD  254 (337)
T ss_dssp             --CTTHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSSTTTSTTCSTTT
T ss_pred             --ChhhcccchhhHHHHHHHCCCCCCC--cCHHHHHHHHhcCCCCCC----ccCCHHHHHHHHhhccCCchhhccccccc
Confidence              8999999999999999999999974  456777777777654333    357899999999999999999995     


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       255 ~~eil~  260 (337)
T d1o6la_         255 AKEVME  260 (337)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            666654

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.1e-31  Score=253.35  Aligned_cols=152  Identities=22%  Similarity=0.344  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDS-EIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~-~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||.|||++ ||+ ||||||+|||++.++.+||+|||+|+.....    ......||+.|+|||++.+..+
T Consensus       106 ~~~~~~qil~aL~yLH~~~~Ii-HRDiKP~NILl~~~~~vkl~DFGla~~~~~~----~~~~~~GT~~Y~APEvl~~~~y  180 (322)
T d1s9ja_         106 LGKVSIAVIKGLTYLREKHKIM-HRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MANSFVGTRSYMSPERLQGTHY  180 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCC-CSCCSGGGEEECTTCCEEECCCCCCHHHHHH----TC---CCSSCCCCHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCEE-ccccCHHHeeECCCCCEEEeeCCCccccCCC----ccccccCCccccCchHHcCCCC
Confidence            568999999999999974 888 9999999999999999999999998865322    2245689999999999998765


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHH----------------------------------------HHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEI----------------------------------------ITSV  143 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i----------------------------------------~~~i  143 (423)
                         +.++||||+||++|||++|+.||..........                                        ...+
T Consensus       181 ---~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (322)
T d1s9ja_         181 ---SVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYI  257 (322)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHHHH
T ss_pred             ---CcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhh
Confidence               899999999999999999999996533221111                                        1111


Q ss_pred             hcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         144 TQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       144 ~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ..  ...|..+...++.++.+++.+||+.||.+|||+.++++.
T Consensus       258 ~~--~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~H  298 (322)
T d1s9ja_         258 VN--EPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  298 (322)
T ss_dssp             HT--SCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hc--cCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            11  111222333568899999999999999999999999873

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.1e-30  Score=248.94  Aligned_cols=146  Identities=19%  Similarity=0.268  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.+|.+||+|||+++.....     .....||+.|+|||++.+..+ 
T Consensus       106 ~~~~~~qi~~al~~lH~~~ii-HrDiKp~NILl~~~g~vkL~DFG~a~~~~~~-----~~~~~Gt~~Y~APE~l~~~~y-  178 (316)
T d1fota_         106 AKFYAAEVCLALEYLHSKDII-YRDLKPENILLDKNGHIKITDFGFAKYVPDV-----TYTLCGTPDYIAPEVVSTKPY-  178 (316)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CCCCCGGGEEECTTSCEEECCCSSCEECSSC-----BCCCCSCTTTCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHhhhhhccCcEE-ccccCchheeEcCCCCEEEecCccceEeccc-----cccccCcccccCHHHHcCCCC-
Confidence            457889999999999999988 9999999999999999999999999875432     235689999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++||||+||++|||++|+.||.+  .+..++...+..+....|    ..+++++.+++.+||+.||.+||     |
T Consensus       179 --~~~~DiwSlGvilyemltG~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~~L~~dp~~R~~~~r~t  250 (316)
T d1fota_         179 --NKSIDWWSFGILIYEMLAGYTPFYD--SNTMKTYEKILNAELRFP----PFFNEDVKDLLSRLITRDLSQRLGNLQNG  250 (316)
T ss_dssp             --CTTHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHTCSCTTTCTTSSTTT
T ss_pred             --CchhhccccchhHHHHHhCCCCCCC--cCHHHHHHHHHcCCCCCC----CCCCHHHHHHHHHHhhhCHHhccccchhh
Confidence              8999999999999999999999974  466778888877654433    25789999999999999999996     8


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       251 ~~~il~  256 (316)
T d1fota_         251 TEDVKN  256 (316)
T ss_dssp             THHHHT
T ss_pred             HHHHHc
Confidence            888865

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.2e-30  Score=253.32  Aligned_cols=146  Identities=19%  Similarity=0.261  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.++.+||+|||+++.....     .....||+.|+|||++.+..+ 
T Consensus       143 ~~~i~~qi~~aL~yLH~~~ii-HRDIKP~NILl~~~g~ikL~DFG~a~~~~~~-----~~~~~Gt~~Y~APE~~~~~~~-  215 (350)
T d1rdqe_         143 ARFYAAQIVLTFEYLHSLDLI-YRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-----TWTLCGTPEALAPEIILSKGY-  215 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTSCEEECCCTTCEECSSC-----BCCCEECGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHhCCEe-cCcCCHHHcccCCCCCEEeeeceeeeecccc-----cccccCccccCCHHHHcCCCC-
Confidence            578999999999999999988 9999999999999999999999999876432     234678999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-----C
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRP-----D  179 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RP-----t  179 (423)
                        +.++|||||||++|||++|+.||.+  .+...+...+..+....|    ..+++++.+++++||+.||.+|+     |
T Consensus       216 --~~~~DiwSlGvilyemltG~~Pf~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~~li~~~L~~dP~kR~~~~r~t  287 (350)
T d1rdqe_         216 --NKAVDWWALGVLIYEMAAGYPPFFA--DQPIQIYEKIVSGKVRFP----SHFSSDLKDLLRNLLQVDLTKRFGNLKNG  287 (350)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTCCHHHHHHHHHHSCSCTTTCTTSSTTT
T ss_pred             --CccccccchhHHHHHHHhCCCCCCC--cCHHHHHHHHhcCCCCCC----ccCCHHHHHHHHHHhhhCHHhcccccccc
Confidence              8999999999999999999999974  456777788877654433    35789999999999999999994     8


Q ss_pred             HHHHHH
Q psy1840         180 LRFVHH  185 (423)
Q Consensus       180 ~~~I~~  185 (423)
                      +.++++
T Consensus       288 ~~ell~  293 (350)
T d1rdqe_         288 VNDIKN  293 (350)
T ss_dssp             THHHHT
T ss_pred             HHHHHc
Confidence            888765

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-30  Score=247.98  Aligned_cols=152  Identities=20%  Similarity=0.247  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc----cEEEeccCCcccccCCCcccccccccCCccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW----VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQ  100 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~----~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~  100 (423)
                      ...++.||+.||+|||+.+++ ||||||+||+++.++    .+||+|||++.......   ......+|+.|+|||++.+
T Consensus       115 ~~~~~~qi~~al~yLH~~~iv-HrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~---~~~~~~~t~~y~APE~~~~  190 (293)
T d1jksa_         115 ATEFLKQILNGVYYLHSLQIA-HFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGN---EFKNIFGTPEFVAPEIVNY  190 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSC---BCSCCCCCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhhccee-ecccccceEEEecCCCcccceEecchhhhhhcCCCc---cccccCCCCcccCHHHHcC
Confidence            578999999999999999988 999999999998776    59999999987654322   2245578899999999987


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         101 PHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       101 ~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                      ..+   +.++|||||||++|||++|+.||.+  .+..+....+..+....+......+++++.+||++||+.||++|||+
T Consensus       191 ~~~---~~~~DiwSlGvilyell~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~  265 (293)
T d1jksa_         191 EPL---GLEADMWSIGVITYILLSGASPFLG--DTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTI  265 (293)
T ss_dssp             CCB---CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             CCC---CCcccchhhhHHHHHHHcCCCCCCC--CCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCH
Confidence            655   8999999999999999999999974  45677777877765444333334678999999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .++++
T Consensus       266 ~eil~  270 (293)
T d1jksa_         266 QDSLQ  270 (293)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99876

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.96  E-value=3.3e-30  Score=244.15  Aligned_cols=156  Identities=17%  Similarity=0.262  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC-
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH-  102 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~-  102 (423)
                      ....++.||+.||+|||++|++ ||||||+||+++.++.+||+|||+++......   ......||+.|+|||.+.+.. 
T Consensus       111 ~~~~~~~qi~~al~~lH~~~iv-HrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~~PE~~~~~~~  186 (277)
T d1phka_         111 ETRKIMRALLEVICALHKLNIV-HRDLKPENILLDDDMNIKLTDFGFSCQLDPGE---KLREVCGTPSYLAPEIIECSMN  186 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEECTTCCEEECCCTTCEECCTTC---CBCCCCSCGGGCCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCc-ccccccceEEEcCCCCeEEccchheeEccCCC---ceeeeeccCCCCCHHHhhcccc
Confidence            3689999999999999999988 99999999999999999999999998754322   224467899999999997532 


Q ss_pred             --CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCH
Q psy1840         103 --LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDL  180 (423)
Q Consensus       103 --~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~  180 (423)
                        ...++.++||||+||++|||++|+.||.+  .+..+....+..+....+......+++++.+++.+||+.||++|||+
T Consensus       187 ~~~~~~~~~~DiwslGvilyeml~g~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~  264 (277)
T d1phka_         187 DNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH--RKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTA  264 (277)
T ss_dssp             TTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCH
T ss_pred             ccCCCCCchheEcccchhhhhhccCCCCCCC--CCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCH
Confidence              22358899999999999999999999974  45666777777665444433344789999999999999999999999


Q ss_pred             HHHHH
Q psy1840         181 RFVHH  185 (423)
Q Consensus       181 ~~I~~  185 (423)
                      .+|++
T Consensus       265 ~eil~  269 (277)
T d1phka_         265 EEALA  269 (277)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            99865

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=8.6e-30  Score=250.44  Aligned_cols=151  Identities=19%  Similarity=0.266  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||.|||++|++ ||||||+|||++.+|.+||+|||+++......    .....||+.|+|||++..+. 
T Consensus       108 ~~~~~~~qi~~aL~ylH~~~ii-HrDlKP~NILl~~~g~iKl~DFGla~~~~~~~----~~~~~GT~~y~APE~~~~~~-  181 (364)
T d1omwa3         108 DMRFYAAEIILGLEHMHNRFVV-YRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVLQKGV-  181 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECSSSCEEECCCTTCEECSSSC----CCSCCSCGGGCCHHHHSTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCcc-ceeeccceeEEcCCCcEEEeeeceeeecCCCc----ccccccccccchhHHhhcCC-
Confidence            3578999999999999999998 99999999999999999999999988654322    24567999999999987543 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-HHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC---
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-EEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD---  179 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt---  179 (423)
                       .++.++|||||||++|||++|+.||....... .++.........    ..+..+++++.+||.+||+.||++|||   
T Consensus       182 -~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~~li~~~L~~dP~~R~t~~~  256 (364)
T d1omwa3         182 -AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAV----ELPDSFSPELRSLLEGLLQRDVNRRLGCLG  256 (364)
T ss_dssp             -CCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCC----CCCSSSCHHHHHHHHHHTCSSTTTSTTTSS
T ss_pred             -CCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCC----CCCCCCCHHHHHHHHHHcccCHHHhCCCcc
Confidence             23899999999999999999999997644332 233333322221    123368899999999999999999999   


Q ss_pred             --HHHHHH
Q psy1840         180 --LRFVHH  185 (423)
Q Consensus       180 --~~~I~~  185 (423)
                        +.++++
T Consensus       257 ~~a~eil~  264 (364)
T d1omwa3         257 RGAQEVKE  264 (364)
T ss_dssp             STHHHHHT
T ss_pred             cCHHHHHc
Confidence              577765

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.7e-30  Score=243.78  Aligned_cols=153  Identities=20%  Similarity=0.223  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||+|||+++++ ||||||+|||++.++.+||+|||+++.....   .......||+.|+|||++.+..+ 
T Consensus       118 ~~~~~~qi~~aL~yLH~~~iv-HrDiKp~NILi~~~~~~kl~dfg~~~~~~~~---~~~~~~~gT~~Y~APE~~~~~~y-  192 (305)
T d1blxa_         118 IKDMMFQLLRGLDFLHSHRVV-HRDLKPQNILVTSSGQIKLADFGLARIYSFQ---MALTSVVVTLWYRAPEVLLQSSY-  192 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTCCEEECSCCSCCCCCGG---GGGCCCCCCCTTCCHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHHHHhCCEE-ecCCCccEEEEcCCCCeeecchhhhhhhccc---ccCCCcccChhhcCcchhcCCCC-
Confidence            457999999999999999998 9999999999999999999999998754322   22346689999999999988765 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CC---------------------CCCCCCCCCchHH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG---------------------LRPDTSSLDCAPS  161 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~---------------------~~p~~~~~~~~~~  161 (423)
                        +.++||||+||++|||++|+.||.+  .+..+.+..+...  .+                     .........+++.
T Consensus       193 --~~~~DiwSlG~il~ell~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  268 (305)
T d1blxa_         193 --ATPVDLWSVGCIFAEMFRRKPLFRG--SSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDEL  268 (305)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHH
T ss_pred             --ChhehhhchHHHHHHHHHCCCCCCC--CCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHH
Confidence              8999999999999999999999974  3444444443311  00                     0000112356889


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         162 IIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       162 l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +.+|+.+||+.||++|||+.++++.
T Consensus       269 ~~dli~~mL~~dP~~R~sa~e~L~H  293 (305)
T d1blxa_         269 GKDLLLKCLTFNPAKRISAYSALSH  293 (305)
T ss_dssp             HHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHCcCChhHCcCHHHHhcC
Confidence            9999999999999999999998763

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-30  Score=247.30  Aligned_cols=167  Identities=26%  Similarity=0.384  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHh--------CCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHD--------SEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKA   94 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~--------~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~A   94 (423)
                      +++++.|++.||.|+|+        +|++ ||||||+||||+.++.+||+|||+++........  .......||+.|+|
T Consensus       102 ~~~~~~~ia~gl~~lH~~~~~~~~~~~Iv-HrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~a  180 (303)
T d1vjya_         102 MIKLALSTASGLAHLHMEIVGTQGKPAIA-HRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA  180 (303)
T ss_dssp             HHHHHHHHHHHHHHHHCCBCSTTCBCEEE-CSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCee-ccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCC
Confidence            68999999999999996        4777 9999999999999999999999998866443322  12245679999999


Q ss_pred             CccccCCCCC---CCCCccchHHHHHHHHHHHhCCCCCCCCC-------------CChHHHHHHHhcCCCCCCCCCC---
Q psy1840          95 PELLRQPHLP---RGTQKGDVYSFGLVLYEVIGRQGPWGHLR-------------MTDEEIITSVTQGSGLRPDTSS---  155 (423)
Q Consensus        95 PE~l~~~~~~---~~s~ksDVyS~Giil~elltg~~Pf~~~~-------------~~~~~i~~~i~~~~~~~p~~~~---  155 (423)
                      ||++.+....   .++.++|||||||++|||+||..||....             .....+.. .......+|..+.   
T Consensus       181 PE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~  259 (303)
T d1vjya_         181 PEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRK-VVCEQKLRPNIPNRWQ  259 (303)
T ss_dssp             HHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHH-HHTTSCCCCCCCGGGG
T ss_pred             hhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHH-HHhccccCCCCCcccC
Confidence            9998764311   13678999999999999999987763211             12233333 3333334444332   


Q ss_pred             -CCchHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhhh
Q psy1840         156 -LDCAPSIIACMRTCWEEDPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       156 -~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~L~~i~~~  193 (423)
                       ..+...+.+|+.+||+.||++|||+.+|++.|+++...
T Consensus       260 ~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         260 SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             GCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence             23456799999999999999999999999999988754

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=242.84  Aligned_cols=154  Identities=21%  Similarity=0.229  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+..  
T Consensus       102 ~~~~~~qil~aL~~lH~~~ii-HrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~--  176 (299)
T d1ua2a_         102 IKAYMLMTLQGLEYLHQHWIL-HRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELLFGAR--  176 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHHTTCS--
T ss_pred             HHHHHHHHHHHHHHhhcccee-cccCCcceEEecCCCccccccCccccccCCCcc--cccceecChhhccHHHHccCC--
Confidence            578999999999999999998 999999999999999999999999876543322  223457899999999987543  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CCC------------------CCCCC----CCCchH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SGL------------------RPDTS----SLDCAP  160 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~~------------------~p~~~----~~~~~~  160 (423)
                      .++.++|||||||++|||++|..||..  .+..+.+..+...  .+.                  .+..+    ....++
T Consensus       177 ~~~~~~DiwSlGvil~el~~g~~pf~~--~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  254 (299)
T d1ua2a_         177 MYGVGVDMWAVGCILAELLLRVPFLPG--DSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGD  254 (299)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCH
T ss_pred             CCChhhhhhhcchHHHHHHhCcCCCCC--CCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCH
Confidence            248999999999999999999999974  3444544444321  000                  00000    124578


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         161 SIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       161 ~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      ++.+|+.+||+.||++|||+.++++
T Consensus       255 ~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         255 DLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             HHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhC
Confidence            9999999999999999999999875

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=5.6e-30  Score=244.98  Aligned_cols=164  Identities=14%  Similarity=0.236  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEc---CCccEEEeccCCcccccCCCcc-----cccccccCCccccCCc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLID---SRWVLQIADFGLHAFKAGQDET-----GQERKLRRRKLYKAPE   96 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld---~~~~vKL~DFGla~~~~~~~~~-----~~~~~~~gt~~y~APE   96 (423)
                      .+.++.|++.||+|||++|++ ||||||+||+++   .+..+||+|||+++........     .......||+.|+|||
T Consensus       105 ~~~~~~qi~~~l~~lH~~~ii-HrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  183 (299)
T d1ckia_         105 VLLLADQMISRIEYIHSKNFI-HRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASIN  183 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHCCee-eccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHH
Confidence            689999999999999999988 999999999985   4567999999999876433221     1234567999999999


Q ss_pred             cccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCh-HHHHHHHhcCC-CCCCCCCCCCchHHHHHHHHHhhhcCC
Q psy1840          97 LLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTD-EEIITSVTQGS-GLRPDTSSLDCAPSIIACMRTCWEEDP  174 (423)
Q Consensus        97 ~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~-~~i~~~i~~~~-~~~p~~~~~~~~~~l~~Li~~C~~~dP  174 (423)
                      .+.+..+   +.++|||||||++|||++|+.||....... ........... ...+......+++++.+++.+||+.+|
T Consensus       184 ~~~~~~~---~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p  260 (299)
T d1ckia_         184 THLGIEQ---SRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRF  260 (299)
T ss_dssp             HHTTBCC---CHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCT
T ss_pred             HHhCCCC---CChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCCh
Confidence            9988765   899999999999999999999997543221 11111111110 011111123688999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q psy1840         175 ELRPDLRFVHHKLKEMNA  192 (423)
Q Consensus       175 ~~RPt~~~I~~~L~~i~~  192 (423)
                      ++||++.+|.+.|+.+..
T Consensus       261 ~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         261 DDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             TCCCCHHHHHHHHHHHHH
T ss_pred             hHCcCHHHHHHHHHHHHH
Confidence            999999999888877643

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-30  Score=249.39  Aligned_cols=155  Identities=17%  Similarity=0.282  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC---CccEEEeccCCcccccCCCcccccccccCCccccCCccccCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS---RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQP  101 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~---~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  101 (423)
                      ...++.||+.||+|||+.|++ ||||||+|||++.   .+.+||+|||+++......   ......||+.|+|||++.+.
T Consensus       113 ~~~i~~qi~~al~ylH~~~ii-HRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~  188 (335)
T d2ozaa1         113 ASEIMKSIGEAIQYLHSINIA-HRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN---SLTTPCYTPYYVAPEVLGPE  188 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCC---CCCCCSCCCSSCCCCCCCGG
T ss_pred             HHHHHHHHHHHHHHHHHcCCc-cccccccccccccccccccccccccceeeeccCCC---ccccccCCcccCCcHHHcCC
Confidence            579999999999999999998 9999999999985   5679999999998654332   22456799999999999887


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC--hHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC
Q psy1840         102 HLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMT--DEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD  179 (423)
Q Consensus       102 ~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~--~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt  179 (423)
                      .+   +.++|||||||++|+|++|+.||.+....  ...+...+..+....|......+++++.+|+.+||+.||++|||
T Consensus       189 ~y---~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  265 (335)
T d2ozaa1         189 KY---DKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT  265 (335)
T ss_dssp             GG---SHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             CC---CHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcC
Confidence            65   89999999999999999999999643221  12222233333322232222357889999999999999999999


Q ss_pred             HHHHHHH
Q psy1840         180 LRFVHHK  186 (423)
Q Consensus       180 ~~~I~~~  186 (423)
                      +.++++.
T Consensus       266 ~~eil~h  272 (335)
T d2ozaa1         266 ITEFMNH  272 (335)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHcC
Confidence            9999764

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-29  Score=244.47  Aligned_cols=149  Identities=24%  Similarity=0.359  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||+++++ ||||||+|||++.++.+||+|||+++......  .......||+.|+|||++.+..+ 
T Consensus       105 ~~~~~~qi~~al~ylH~~~ii-HrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-  180 (320)
T d1xjda_         105 ATFYAAEIILGLQFLHSKGIV-YRDLKLDNILLDKDGHIKIADFGMCKENMLGD--AKTNTFCGTPDYIAPEILLGQKY-  180 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCB-CCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--CCBCCCCSCGGGCCHHHHTTCCB-
T ss_pred             HHHHHHHHHHHHHHHHhCCee-eccCcccceeecCCCceeccccchhhhccccc--ccccccCCCCCcCCHHHHcCCCC-
Confidence            578999999999999999998 99999999999999999999999997654322  22245679999999999998766 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHH-HH
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLR-FV  183 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~-~I  183 (423)
                        +.++|||||||++|||++|+.||.+  .+..++...+..+.+..|    ..+++++.+|+.+||+.||++||++. ++
T Consensus       181 --~~~~DiwSlGvilyemltG~~PF~~--~~~~~~~~~i~~~~~~~p----~~~s~~~~dli~~~L~~dP~~R~s~~~~l  252 (320)
T d1xjda_         181 --NHSVDWWSFGVLLYEMLIGQSPFHG--QDEEELFHSIRMDNPFYP----RWLEKEAKDLLVKLFVREPEKRLGVRGDI  252 (320)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCSSCC--SSHHHHHHHHHHCCCCCC----TTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred             --CchhhhhhhhHHHHHHHhCCCCCCC--CCHHHHHHHHHcCCCCCC----ccCCHHHHHHHHHhcccCCCCCcCHHHHH
Confidence              8999999999999999999999974  567788888877654433    35789999999999999999999985 56


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       253 ~~  254 (320)
T d1xjda_         253 RQ  254 (320)
T ss_dssp             GG
T ss_pred             Hh
Confidence            43

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=239.69  Aligned_cols=142  Identities=24%  Similarity=0.419  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++. ++.+||+|||+++.....    ......||+.|+|||++.+..+
T Consensus       112 ~~~~~~qi~~al~~lH~~~ii-HrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~----~~~~~~GT~~y~aPE~~~~~~~  186 (273)
T d1xwsa_         112 ARSFFWQVLEAVRHCHNCGVL-HRDIKDENILIDLNRGELKLIDFGSGALLKDT----VYTDFDGTRVYSPPEWIRYHRY  186 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSGGGEEEETTTTEEEECCCTTCEECCSS----CBCCCCSCGGGSCHHHHHHSCB
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-cccCcccceEEecCCCeEEECccccceecccc----cccccccCCCcCCHHHHcCCCC
Confidence            568999999999999999998 9999999999985 579999999998764322    2235679999999999986543


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHH
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRFV  183 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I  183 (423)
                        ++.++||||+||++|||++|+.||..    ..+    +..+....    ...+++++.+++.+||+.||++|||+.++
T Consensus       187 --~~~~~DiwSlGvilyell~g~~Pf~~----~~~----i~~~~~~~----~~~~s~~~~~li~~~L~~dp~~R~s~~ei  252 (273)
T d1xwsa_         187 --HGRSAAVWSLGILLYDMVCGDIPFEH----DEE----IIRGQVFF----RQRVSSECQHLIRWCLALRPSDRPTFEEI  252 (273)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHSSCSCCS----HHH----HHHCCCCC----SSCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             --CCcccccccceeeehhHhhCCCCCCC----chH----HhhcccCC----CCCCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence              26789999999999999999999963    222    23332222    23578999999999999999999999998


Q ss_pred             HH
Q psy1840         184 HH  185 (423)
Q Consensus       184 ~~  185 (423)
                      ++
T Consensus       253 l~  254 (273)
T d1xwsa_         253 QN  254 (273)
T ss_dssp             HT
T ss_pred             hc
Confidence            76

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.95  E-value=7.4e-29  Score=236.66  Aligned_cols=165  Identities=12%  Similarity=0.209  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC-----CccEEEeccCCcccccCCCc-----ccccccccCCccccC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS-----RWVLQIADFGLHAFKAGQDE-----TGQERKLRRRKLYKA   94 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~-----~~~vKL~DFGla~~~~~~~~-----~~~~~~~~gt~~y~A   94 (423)
                      .+.++.|++.||+|||+.|++ ||||||+||+++.     ++.+||+|||+++.......     ........||+.|+|
T Consensus       103 ~~~i~~q~~~~l~~lH~~gii-HrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~a  181 (293)
T d1csna_         103 VAMAAKQMLARVQSIHEKSLV-YRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMS  181 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHCCce-eccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcC
Confidence            679999999999999999988 9999999999974     57899999999987543221     122345679999999


Q ss_pred             CccccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-ChHHHHHHHhcCCC-CCCCCCCCCchHHHHHHHHHhhhc
Q psy1840          95 PELLRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM-TDEEIITSVTQGSG-LRPDTSSLDCAPSIIACMRTCWEE  172 (423)
Q Consensus        95 PE~l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~-~~~~i~~~i~~~~~-~~p~~~~~~~~~~l~~Li~~C~~~  172 (423)
                      ||++.+..+   +.++|||||||++|||++|+.||.+... ...+....+..... ..+......+|+++.+++..||..
T Consensus       182 PE~~~~~~~---~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~  258 (293)
T d1csna_         182 INTHLGREQ---SRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNL  258 (293)
T ss_dssp             HHHHTTCCC---CHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHC
T ss_pred             HHHhcCCCC---ChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcC
Confidence            999988655   8999999999999999999999975433 33333333332111 111111235789999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhh
Q psy1840         173 DPELRPDLRFVHHKLKEMNAG  193 (423)
Q Consensus       173 dP~~RPt~~~I~~~L~~i~~~  193 (423)
                      +|++||+++.+.+.|+++...
T Consensus       259 ~~~~rP~y~~l~~~l~~~~~~  279 (293)
T d1csna_         259 AFDATPDYDYLQGLFSKVLER  279 (293)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHH
T ss_pred             CcccCcCHHHHHHHHHHHHHH
Confidence            999999999998887776543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-29  Score=242.27  Aligned_cols=153  Identities=17%  Similarity=0.226  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcC--CccEEEeccCCcccccCCCcccccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDS--RWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~--~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||++|++ ||||||+|||++.  .+.+||+|||+++......   ......+++.|+|||.+.+..
T Consensus       104 ~~~i~~qi~~al~yLH~~~ii-HrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~---~~~~~~~t~~y~ape~~~~~~  179 (321)
T d1tkia_         104 IVSYVHQVCEALQFLHSHNIG-HFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD---NFRLLFTAPEYYAPEVHQHDV  179 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC---EEEEEESCGGGSCHHHHTTCE
T ss_pred             HHHHHHHHHHHHHHHHHcCCC-cccccccceeecCCCceEEEEcccchhhccccCC---cccccccccccccchhccCCC
Confidence            578999999999999999998 9999999999984  4589999999987654322   224457889999999998776


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCCHHH
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPDLRF  182 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~  182 (423)
                      +   +.++||||+||++|+|++|..||..  .+..++...+..+....+......+++++.+|+.+||..||++|||+.+
T Consensus       180 ~---~~~~DiWSlGvily~ll~G~~Pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e  254 (321)
T d1tkia_         180 V---STATDMWSLGTLVYVLLSGINPFLA--ETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASE  254 (321)
T ss_dssp             E---CHHHHHHHHHHHHHHHHHSSCTTCC--SSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             C---CchhhcccHHHHHHHHHhCCCCCCC--CCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            5   8999999999999999999999974  4567788888776544443333467899999999999999999999999


Q ss_pred             HHHH
Q psy1840         183 VHHK  186 (423)
Q Consensus       183 I~~~  186 (423)
                      +++.
T Consensus       255 il~h  258 (321)
T d1tkia_         255 ALQH  258 (321)
T ss_dssp             HHHS
T ss_pred             HhcC
Confidence            9873

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=234.74  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||+.|++ ||||||+|||++.++.+||+|||+++.......  ......||+.|+|||.+....+ 
T Consensus       104 ~~~~~~qil~~L~yLH~~~Ii-HrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~apE~~~~~~~-  179 (298)
T d1gz8a_         104 IKSYLFQLLQGLAFCHSHRVL-HRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRAPEILLGCKY-  179 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTSCEEECSTTHHHHHCCCSB--CTTCCBCCCTTCCHHHHTTCSS-
T ss_pred             HHHHHHHHHHHHHHhhcCCEE-ccccCchheeecccCcceeccCCcceeccCCcc--cceeecccceeeehhhhccccC-
Confidence            679999999999999999998 999999999999999999999999876543322  2245578999999998876542 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--C-------------CCC---CCCC-------CCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--S-------------GLR---PDTS-------SLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~-------------~~~---p~~~-------~~~~~  159 (423)
                       .+.++||||+||++|+|++|+.||.+.  +..+.+..+...  .             ...   +...       ...++
T Consensus       180 -~~~~~DiwSlGvily~m~~G~~Pf~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  256 (298)
T d1gz8a_         180 -YSTAVDIWSLGCIFAEMVTRRALFPGD--SEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLD  256 (298)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCC
T ss_pred             -CCccccccccchhhhHHhhCCCCCCCC--CHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCC
Confidence             378999999999999999999999743  334444333211  0             000   0000       12457


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +++.+|+.+||+.||++|||+.++++.
T Consensus       257 ~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         257 EDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            889999999999999999999999764

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.2e-28  Score=233.76  Aligned_cols=157  Identities=20%  Similarity=0.223  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc--cccccccCCccccCCccccCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET--GQERKLRRRKLYKAPELLRQPH  102 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~~  102 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+||+|||+++........  .......||+.|+|||.+.+..
T Consensus       119 ~~~i~~qil~~l~~lH~~~iv-HrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~  197 (318)
T d3blha1         119 IKRVMQMLLNGLYYIHRNKIL-HRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGER  197 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHhccCCEE-ecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCC
Confidence            468999999999999999998 9999999999999999999999998765432221  2223457899999999987653


Q ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcCCCCCCCCC-------------------C--------
Q psy1840         103 LPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQGSGLRPDTS-------------------S--------  155 (423)
Q Consensus       103 ~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~~~~~p~~~-------------------~--------  155 (423)
                        .++.++||||+||++|||++|+.||.+  .+..+....+.......+...                   .        
T Consensus       198 --~~~~k~DiwSlGvil~el~~g~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (318)
T d3blha1         198 --DYGPPIDLWGAGCIMAEMWTRSPIMQG--NTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLK  273 (318)
T ss_dssp             --SCCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHH
T ss_pred             --CCCcHHHcccCCceeeeHhhCCCCCCC--CCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhc
Confidence              248999999999999999999999974  334444443332110000000                   0        


Q ss_pred             -CCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         156 -LDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       156 -~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                       ...++.+.+||.+||+.||++|||+.++++.
T Consensus       274 ~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         274 AYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             HHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             cccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence             0125677899999999999999999999864

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.95  E-value=4.2e-28  Score=230.35  Aligned_cols=154  Identities=19%  Similarity=0.226  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||+.+++ ||||||+|||++.++.+|++|||.+........  ......+++.|+|||.+.+..  
T Consensus       102 ~~~i~~qi~~~L~~LH~~~Iv-HrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~--~~~~~~~~~~y~~pE~~~~~~--  176 (286)
T d1ob3a_         102 AKSFLLQLLNGIAYCHDRRVL-HRDLKPQNLLINREGELKIADFGLARAFGIPVR--KYTHEIVTLWYRAPDVLMGSK--  176 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTSCEEECCTTHHHHHCC-----------CCCTTCCHHHHTTCC--
T ss_pred             hHHHHHHHHHHHHHhccCcEE-ecCCCCceeeEcCCCCEEecccccceecccCcc--ccceecccchhhhHHHHhCCC--
Confidence            578999999999999999998 999999999999999999999999876533221  223446888999999987654  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CC-----------------------CCCCCCCCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG-----------------------LRPDTSSLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~-----------------------~~p~~~~~~~~  159 (423)
                      ..+.++|||||||++|||++|+.||.+  .+..+.+.++...  .+                       .........++
T Consensus       177 ~~~~~~DiwslGv~l~el~~G~~pf~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  254 (286)
T d1ob3a_         177 KYSTTIDIWSVGCIFAEMVNGTPLFPG--VSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLD  254 (286)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHSSCSCCC--SSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCC
T ss_pred             CCCcceeehhcCcHHHHHHHCCCCCCC--CCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCC
Confidence            248999999999999999999999974  3344444443210  00                       00001123467


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +++.+++.+||+.||++|||+.++++
T Consensus       255 ~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         255 ESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            89999999999999999999999874

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-27  Score=233.93  Aligned_cols=154  Identities=21%  Similarity=0.187  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||+|||++||+ ||||||+|||++.++ .+||+|||+++.......   .....|+..|+|||.+.+.. 
T Consensus       124 ~~~i~~qil~aL~yLH~~~Ii-HrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~-  198 (350)
T d1q5ka_         124 VKLYMYQLFRSLAYIHSFGIC-HRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELIFGAT-  198 (350)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEE-CCCCCGGGEEECTTTCCEEECCCTTCEECCTTSC---CCSCCSCTTSCCHHHHTTCS-
T ss_pred             HHHHHHHHHHHHHHHHhcCCc-ccCCCcceEEEecCCCceeEecccchhhccCCcc---cccccccccccChHHhhccc-
Confidence            568999999999999999998 999999999999775 899999999876543322   23457889999999887643 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc---------------C--CCCCCC--------CCCCCc
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ---------------G--SGLRPD--------TSSLDC  158 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~---------------~--~~~~p~--------~~~~~~  158 (423)
                       .++.++||||+||++|||++|..||...  +..+.+..+..               .  ....+.        ......
T Consensus       199 -~~~~~~DIwSlG~il~el~~g~~pf~~~--~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (350)
T d1q5ka_         199 -DYTSSIDVWSAGCVLAELLLGQPIFPGD--SGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRT  275 (350)
T ss_dssp             -SCCTHHHHHHHHHHHHHHHHTSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTS
T ss_pred             -CCCcceeecccceEEEehhhCCCCCCCC--CHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCC
Confidence             2489999999999999999999999743  23333332211               0  000111        112346


Q ss_pred             hHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         159 APSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       159 ~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ++++.+|+.+||..||++|||+.++++.
T Consensus       276 s~~~~dLl~~mL~~dP~~R~ta~e~L~H  303 (350)
T d1q5ka_         276 PPEAIALCSRLLEYTPTARLTPLEACAH  303 (350)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            8899999999999999999999998763

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-28  Score=236.02  Aligned_cols=155  Identities=19%  Similarity=0.251  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          24 GSISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        24 ~~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ....++.||+.||+|||+.+++ ||||||+||+++.++.+||+|||+++...... ........|++.|+|||.+.+...
T Consensus       130 ~~~~~~~Qi~~al~~lH~~~iv-HrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~-~~~~~~~~g~~~~~~pe~~~~~~~  207 (322)
T d1vzoa_         130 EVQIYVGEIVLALEHLHKLGII-YRDIKLENILLDSNGHVVLTDFGLSKEFVADE-TERAYDFCGTIEYMAPDIVRGGDS  207 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTSCEEESCSSEEEECCGGG-GGGGCGGGSCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHhhcCCEE-eccCCccceeecCCCCEEEeeccchhhhcccc-cccccccccccccchhHHhhcCCc
Confidence            3567899999999999999998 99999999999999999999999987654322 222345678999999999976542


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCC--CChHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCC--
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLR--MTDEEIITSVTQGSGLRPDTSSLDCAPSIIACMRTCWEEDPELRPD--  179 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~--~~~~~i~~~i~~~~~~~p~~~~~~~~~~l~~Li~~C~~~dP~~RPt--  179 (423)
                       .++.++|||||||++|||++|+.||....  .....+...........    +..+++++.+++.+||+.||++||+  
T Consensus       208 -~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~----~~~~s~~~~~li~~~l~~dP~~R~s~~  282 (322)
T d1vzoa_         208 -GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPY----PQEMSALAKDLIQRLLMKDPKKRLGCG  282 (322)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCC----CTTSCHHHHHHHHHHTCSSGGGSTTSS
T ss_pred             -CCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCC----cccCCHHHHHHHHHHcccCHHHcCCCC
Confidence             34789999999999999999999996543  22334444433332222    2358899999999999999999994  


Q ss_pred             ---HHHHHH
Q psy1840         180 ---LRFVHH  185 (423)
Q Consensus       180 ---~~~I~~  185 (423)
                         ++++++
T Consensus       283 ~~t~~eil~  291 (322)
T d1vzoa_         283 PRDADEIKE  291 (322)
T ss_dssp             TTTHHHHHT
T ss_pred             cccHHHHHc
Confidence               677764

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=231.19  Aligned_cols=152  Identities=20%  Similarity=0.236  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.++.+|++|||+++.....     .....+|+.|+|||.+.+..  
T Consensus       123 ~~~~~~qi~~aL~~LH~~~Ii-HrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~--  194 (346)
T d1cm8a_         123 IQFLVYQMLKGLRYIHAAGII-HRDLKPGNLAVNEDCELKILDFGLARQADSE-----MTGYVVTRWYRAPEVILNWM--  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEECCSS-----CCSSCSCGGGCCTHHHHTTT--
T ss_pred             HHHHHHHHHHHHHHHHhCCCc-ccccCcchhhcccccccccccccceeccCCc-----cccccccccccCHHHHcCCC--
Confidence            578999999999999999998 9999999999999999999999998765322     23467889999999987643  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC------------------------CCCC---CCCCCCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG------------------------SGLR---PDTSSLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~------------------------~~~~---p~~~~~~  157 (423)
                      ..+.++||||+||++|||++|..||.+.  +....+..+...                        ....   .......
T Consensus       195 ~~~~~~DiwSlGvil~ell~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (346)
T d1cm8a_         195 RYTQTVDIWSVGCIMAEMITGKTLFKGS--DHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTN  272 (346)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTT
T ss_pred             CCCccchhhcchHHHHHHHHCcCCCCCC--ChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccC
Confidence            2389999999999999999999999753  222222221110                        0000   0011235


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      +++.+.+|+.+||..||.+|||+.++++.
T Consensus       273 ~s~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         273 ASPLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             CCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            68899999999999999999999999864

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-27  Score=233.46  Aligned_cols=157  Identities=17%  Similarity=0.238  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcc-cccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDET-GQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~-~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||+|||++|++ ||||||+|||+++++.+||+|||++......... .......|++.|+|||++.... 
T Consensus       111 i~~i~~qil~al~yLH~~~ii-HRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~-  188 (345)
T d1pmea_         111 ICYFLYQILRGLKYIHSANVL-HRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSK-  188 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBC-
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-CCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCC-
Confidence            579999999999999999998 9999999999999999999999998765433221 2234567899999999986543 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhc------------------------CCCCCCC---CCCC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQ------------------------GSGLRPD---TSSL  156 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~------------------------~~~~~p~---~~~~  156 (423)
                       .++.++||||+||++|||++|+.||....  ..+.......                        .....+.   ....
T Consensus       189 -~~~~~~DiwSlG~il~eml~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (345)
T d1pmea_         189 -GYTKSIDIWSVGCILAEMLSNRPIFPGKH--YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFP  265 (345)
T ss_dssp             -SCSTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCT
T ss_pred             -CCCchhhhhccCceehHHhhCCCCCCCCC--HHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCC
Confidence             24889999999999999999999997432  2222111110                        0000000   0012


Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         157 DCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       157 ~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                      ..++++.+|+.+||+.||.+|||+.++++.
T Consensus       266 ~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         266 NADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             TSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            467889999999999999999999999763

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-26  Score=218.65  Aligned_cols=155  Identities=15%  Similarity=0.101  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.|++.||+|||++|++ ||||||+|||++.++.+||+|||.++........  .....++..|+|||.+.+..  
T Consensus       103 ~~~~~~q~~~aL~~lH~~~Iv-HrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~--~~~~~~~~~~~~pe~~~~~~--  177 (292)
T d1unla_         103 VKSFLFQLLKGLGFCHSRNVL-HRDLKPQNLLINRNGELKLANFGLARAFGIPVRC--YSAEVVTLWYRPPDVLFGAK--  177 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEECTTCCEEECCCTTCEECCSCCSC--CCSCCSCGGGCCHHHHTTCS--
T ss_pred             HHHHHHHHHHHHHHhhcCCEe-eecccCcccccccCCceeeeecchhhcccCCCcc--ceeeccccchhhhhHhccCC--
Confidence            579999999999999999998 9999999999999999999999998865433222  23345677899999887654  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC--CC-----------------------CCCCCCCCCch
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG--SG-----------------------LRPDTSSLDCA  159 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~--~~-----------------------~~p~~~~~~~~  159 (423)
                      ..+.++||||+||++|||++|+.||... .+..+....+...  .+                       ..........+
T Consensus       178 ~~~~~~DiwSlG~il~ell~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  256 (292)
T d1unla_         178 LYSTSIDMWSAGCIFAELANAGRPLFPG-NDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLN  256 (292)
T ss_dssp             CCCTHHHHHHHHHHHHHHTTTSCCSCCC-SSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCC
T ss_pred             CCCchhhccccchHHHHHhhCCCCCCCC-CCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCC
Confidence            2389999999999999999999997542 2334444443311  00                       00011123567


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         160 PSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       160 ~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +.+.+|+.+||+.||.+|||+.++++
T Consensus       257 ~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         257 ATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            89999999999999999999999875

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.93  E-value=1.8e-26  Score=223.20  Aligned_cols=154  Identities=19%  Similarity=0.205  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCc-cEEEeccCCcccccCCCcccccccccCCccccCCccccCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRW-VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHL  103 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~-~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  103 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.++ .+||+|||+++.......   .....+|+.|+|||.+.+.. 
T Consensus       131 i~~i~~qil~aL~~LH~~gIv-HrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~-  205 (328)
T d3bqca1         131 IRFYMYEILKALDYCHSMGIM-HRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELLVDYQ-  205 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC---CCSCCSCGGGCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHhhcccc-cccccccceEEcCCCCeeeecccccceeccCCCc---ccccccCccccCcccccCCC-
Confidence            568999999999999999998 999999999998655 699999999886543322   24557889999999987654 


Q ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh-------------cC-CC-------------------CC
Q psy1840         104 PRGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT-------------QG-SG-------------------LR  150 (423)
Q Consensus       104 ~~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~-------------~~-~~-------------------~~  150 (423)
                       .++.++||||+||++||+++|+.||........ ....+.             .. ..                   ..
T Consensus       206 -~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~-~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (328)
T d3bqca1         206 -MYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD-QLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFV  283 (328)
T ss_dssp             -CCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHH-HHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGC
T ss_pred             -CCCcccchhhhhhhhHHhccCCCCCCCCchhHH-HHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcc
Confidence             248999999999999999999999965332211 111110             00 00                   00


Q ss_pred             CCCCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         151 PDTSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       151 p~~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +......+++++.+||++||..||.+|||+.++++
T Consensus       284 ~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         284 HSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             CTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            11111346789999999999999999999999876

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-26  Score=222.82  Aligned_cols=151  Identities=18%  Similarity=0.241  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||+|||++|++ ||||||+|||++.++.+|++|||++.....     ......|++.|+|||.+.+..  
T Consensus       123 ~~~i~~qil~aL~~LH~~gii-HrDiKp~NILi~~~~~~kl~dfg~a~~~~~-----~~~~~~g~~~y~apE~~~~~~--  194 (348)
T d2gfsa1         123 VQFLIYQILRGLKYIHSADII-HRDLKPSNLAVNEDCELKILDFGLARHTDD-----EMTGYVATRWYRAPEIMLNWM--  194 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CCCCCGGGEEECTTCCEEECCC----CCTG-----GGSSSCHHHHTSCHHHHTTCS--
T ss_pred             HHHHHHHHHHHHHHHHhCCCc-ccccCCccccccccccccccccchhcccCc-----ccccccccccccCchhhcCCc--
Confidence            568999999999999999998 999999999999999999999999865422     223456788899999877654  


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHhcC-----------------------CCCCCCCC----CCC
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVTQG-----------------------SGLRPDTS----SLD  157 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~~~-----------------------~~~~p~~~----~~~  157 (423)
                      ..+.++||||+||++|+|++|+.||.+.  +.......+...                       ....+...    ...
T Consensus       195 ~~~~~~DiwSlGv~l~~ll~g~~pF~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (348)
T d2gfsa1         195 HYNQTVDIWSVGCIMAELLTGRTLFPGT--DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG  272 (348)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTT
T ss_pred             cCCcccchhhhhHHHHHHHhCCCCCCCC--CHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCC
Confidence            2388999999999999999999999743  222222222211                       00011110    135


Q ss_pred             chHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         158 CAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       158 ~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      +++++.+||.+||+.||.+|||+.++++
T Consensus       273 ~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         273 ANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence            6789999999999999999999999876

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=219.33  Aligned_cols=153  Identities=20%  Similarity=0.210  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccccCCCcccccccccCCccccCCccccCCCCC
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPELLRQPHLP  104 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  104 (423)
                      ...++.||+.||.|||+.|++ ||||||+|||++.++.+|++|||+++.....   .......+|+.|+|||.+.+..+ 
T Consensus       121 i~~~~~qil~gl~~LH~~gii-HrDlKP~Nil~~~~~~~kl~df~~~~~~~~~---~~~~~~~~t~~y~aPE~l~~~~~-  195 (355)
T d2b1pa1         121 MSYLLYQMLCGIKHLHSAGII-HRDLKPSNIVVKSDCTLKILDFGLARTAGTS---FMMTPYVVTRYYRAPEVILGMGY-  195 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSCCCGGGEEECTTCCEEECCCCC------------------CCTTCCHHHHTTCCC-
T ss_pred             HHHHHHHHHHHHHHhhhcccc-cccCCccccccccccceeeechhhhhccccc---cccccccccccccChhhhcCCCC-
Confidence            568999999999999999998 9999999999999999999999997754322   22245578899999999988655 


Q ss_pred             CCCCccchHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHh----------------------cCCCCCCCCC--------
Q psy1840         105 RGTQKGDVYSFGLVLYEVIGRQGPWGHLRMTDEEIITSVT----------------------QGSGLRPDTS--------  154 (423)
Q Consensus       105 ~~s~ksDVyS~Giil~elltg~~Pf~~~~~~~~~i~~~i~----------------------~~~~~~p~~~--------  154 (423)
                        +.++||||+||+++||++|+.||.+.  +.......+.                      ..........        
T Consensus       196 --~~~~DiwSlG~~l~ell~g~~pF~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (355)
T d2b1pa1         196 --KENVDIWSVGCIMGEMVRHKILFPGR--DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDS  271 (355)
T ss_dssp             --CTTHHHHHHHHHHHHHHHSSCSSCCS--SHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGG
T ss_pred             --CCCcccccccchHHHHhhCCCCCCCC--CHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccc
Confidence              89999999999999999999999643  2222222211                      1111000000        


Q ss_pred             --------CCCchHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q psy1840         155 --------SLDCAPSIIACMRTCWEEDPELRPDLRFVHHK  186 (423)
Q Consensus       155 --------~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~~  186 (423)
                              ....++++.+|+++||..||++|||+.++++.
T Consensus       272 ~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         272 LFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             GSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                    01235678999999999999999999999764

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.6e-24  Score=209.23  Aligned_cols=152  Identities=21%  Similarity=0.298  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHh-CCCeeecCCCCCCEEEcCCc------cEEEeccCCcccccCCCcccccccccCCccccCCcc
Q psy1840          25 SISVNTTASVGMIHLHD-SEIISHGNLRSSNCLIDSRW------VLQIADFGLHAFKAGQDETGQERKLRRRKLYKAPEL   97 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~-~~ii~HrDLkp~NILld~~~------~vKL~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~   97 (423)
                      ...++.||+.||+|||+ .|++ ||||||+|||++.++      .+|++|||.+......     .....||+.|+|||+
T Consensus       127 i~~i~~qil~al~~lh~~~~Iv-HrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~-----~~~~~gt~~y~aPE~  200 (362)
T d1q8ya_         127 VKQISKQLLLGLDYMHRRCGII-HTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEV  200 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEE-CSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCcc-cccCChhHeeeeccCcccccceeeEeecccccccccc-----cccccccccccChhh
Confidence            45799999999999998 7887 999999999998665      4999999998754322     234578999999999


Q ss_pred             ccCCCCCCCCCccchHHHHHHHHHHHhCCCCCCCCCC----ChHHHHHHH-h-----------cC---------CCC---
Q psy1840          98 LRQPHLPRGTQKGDVYSFGLVLYEVIGRQGPWGHLRM----TDEEIITSV-T-----------QG---------SGL---  149 (423)
Q Consensus        98 l~~~~~~~~s~ksDVyS~Giil~elltg~~Pf~~~~~----~~~~i~~~i-~-----------~~---------~~~---  149 (423)
                      +.+..+   +.++||||+||++++|++|+.||.....    ......... .           ..         ...   
T Consensus       201 ~~~~~~---~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~  277 (362)
T d1q8ya_         201 LLGAPW---GCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRN  277 (362)
T ss_dssp             HHTCCC---CTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSS
T ss_pred             ccccCC---CccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhc
Confidence            987665   8999999999999999999999963211    111111110 0           00         000   


Q ss_pred             CCC--------------CCCCCchHHHHHHHHHhhhcCCCCCCCHHHHHH
Q psy1840         150 RPD--------------TSSLDCAPSIIACMRTCWEEDPELRPDLRFVHH  185 (423)
Q Consensus       150 ~p~--------------~~~~~~~~~l~~Li~~C~~~dP~~RPt~~~I~~  185 (423)
                      .+.              ......++++.+|+.+||+.||.+|||+.++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         278 ISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             CCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             cccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            000              001234678999999999999999999999875

>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.3e-12  Score=115.98  Aligned_cols=58  Identities=19%  Similarity=0.183  Sum_probs=53.3

Q ss_pred             ccccceeEEEeeccccccccccC----CHhHHHHhhhccch-hhhhccC---CCceEEEeecccCC
Q psy1840         337 ESFDSVTIYFSDIVGFTQLSAES----TETGRVTTRDSRRT-PDLKVGG---SNPRQVITGTDMLR  394 (423)
Q Consensus       337 ~~~~~vtv~f~di~gft~~~~~~----~p~~~v~~ln~~~~-fd~~~~~---~~~~~v~~~~~~~~  394 (423)
                      +.|++|||+|+||+|||.+++++    .|.+++.+||++|+ ||.+++.   +++++++|.||.|+
T Consensus         2 ~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~~~~~Ln~~~~~fd~~~~~~~~~g~~~~k~iGD~~~   67 (199)
T d1azsb_           2 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYM   67 (199)
T ss_dssp             CEEEEEEEEEEECTTHHHHCCCCTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEE
T ss_pred             CCCCcEEEEEEEcCCChHHHHhCCcccCHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCeEE
Confidence            68999999999999999998765    47899999999999 9999887   89999999999888

>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase VC1, domain C1a
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=99.00  E-value=2.7e-11  Score=106.50  Aligned_cols=62  Identities=24%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             CCCCccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         333 FVEPESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       333 ~~~~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      .+-.+.|++|||+|+||+|||.+++..+|.+++.+||.+|+ +|.++.+++.+.+++.||.++
T Consensus         6 ~~~~~~~~~Vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~~~k~~GD~~~   68 (190)
T d1azsa_           6 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYY   68 (190)
T ss_dssp             CCEEEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEE
T ss_pred             hhhhhcCCcEEEEEEEcCChhHHHHhCCHHHHHHHHHHHHHHHhhcccccCccccccceeEEE
Confidence            34567899999999999999999999999999999999999 999999999999999999888

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.95  E-value=2.7e-10  Score=99.66  Aligned_cols=48  Identities=21%  Similarity=0.208  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeecCCCCCCEEEcCCccEEEeccCCcccc
Q psy1840          25 SISVNTTASVGMIHLHDSEIISHGNLRSSNCLIDSRWVLQIADFGLHAFK   74 (423)
Q Consensus        25 ~l~i~~qi~~gL~yLH~~~ii~HrDLkp~NILld~~~~vKL~DFGla~~~   74 (423)
                      ...++.|++.|+.|||+.|++ ||||||+|||++.++ ++|+|||.+...
T Consensus       105 ~~~i~~ql~~~l~~lH~~gii-HrDiKP~NILv~~~~-~~liDFG~a~~~  152 (191)
T d1zara2         105 PDEVLDMILEEVAKFYHRGIV-HGDLSQYNVLVSEEG-IWIIDFPQSVEV  152 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEE-CSCCSTTSEEEETTE-EEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHhhCCEE-EccCChhheeeeCCC-EEEEECCCcccC
Confidence            468999999999999999998 999999999999765 889999998654

>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylate cyclase CyaC
species: Spirulina platensis [TaxId: 118562]

Probab=98.81  E-value=7e-10  Score=97.48  Aligned_cols=58  Identities=28%  Similarity=0.249  Sum_probs=54.2

Q ss_pred             CccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         336 PESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       336 ~~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      ||. ..|||+|+||+|||.+++..+|.+++.+||++|+ ++..|.+++.+.+++.||.++
T Consensus         3 pe~-r~vtvlF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~   61 (197)
T d1wc1a_           3 PEP-RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIM   61 (197)
T ss_dssp             CEE-EEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred             Ccc-EEEEEEEEEeCCHHHHHHhCCHHHHHHHHHHHHHHHHhhHhhhhhhceeeccceEE
Confidence            444 6899999999999999999999999999999999 999999999999999999988

>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Receptor-type monomeric adenylyl cyclase
species: Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]

Probab=98.32  E-value=5.6e-08  Score=87.57  Aligned_cols=57  Identities=25%  Similarity=0.154  Sum_probs=52.4

Q ss_pred             ccccceeEEEeeccccccccccCCHhHHHHhhhccch-hhhhccCCCceEEEeecccCC
Q psy1840         337 ESFDSVTIYFSDIVGFTQLSAESTETGRVTTRDSRRT-PDLKVGGSNPRQVITGTDMLR  394 (423)
Q Consensus       337 ~~~~~vtv~f~di~gft~~~~~~~p~~~v~~ln~~~~-fd~~~~~~~~~~v~~~~~~~~  394 (423)
                      +..++|||+|+||+|||.+++. .|.+++.+||.++. ++.+|.+++.|.+++.||.++
T Consensus         8 ~~~~~vtilF~DI~gfT~l~e~-~p~~~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~l   65 (235)
T d1fx2a_           8 EPTDPVTLIFTDIESSTALWAA-HPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFM   65 (235)
T ss_dssp             CTTSCEEEEEEEETTHHHHHHH-CTTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred             CCCCCEEEEEEeccChHHHHHh-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCcEE
Confidence            3467899999999999999875 57799999999999 999999999999999999998

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.92  E-value=0.058  Score=48.61  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=25.6

Q ss_pred             CCeeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          43 EIISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        43 ~ii~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      |+| |+|+.+.|++++.+...-|.||+.+.
T Consensus       184 giI-HgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         184 GVI-HADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEE-CSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccc-cCCcchhhhhcccccceeEecccccc
Confidence            566 99999999999999888999999754

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.67  E-value=0.2  Score=43.32  Aligned_cols=28  Identities=32%  Similarity=0.476  Sum_probs=24.1

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ++|||+.|.||+++.++.+-|.||+.+.
T Consensus       185 l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         185 FSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEEeeccCcceeecCCceEEEeechhcc
Confidence            4599999999999987777899998754

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=83.62  E-value=0.21  Score=42.89  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=24.1

Q ss_pred             eeecCCCCCCEEEcCCccEEEeccCCcc
Q psy1840          45 ISHGNLRSSNCLIDSRWVLQIADFGLHA   72 (423)
Q Consensus        45 i~HrDLkp~NILld~~~~vKL~DFGla~   72 (423)
                      ++|||+.|.||+++.+..+-|+||+.+.
T Consensus       177 liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         177 VTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             EEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            4599999999999988778899998753