Diaphorina citri psyllid: psy1882

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MSSSCCGTKKQKLNNSTGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEECccccccccCECccccccHHHHHHHHHHHHHHcccccccccHHHccccEEEEEEEcccccccccccccccCEEEEEEEECcccccccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEEEEEEEEEEEHHHHHHHHHHccc
******************************************EMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNG**
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MSSSCCGTKKQKLNNSTGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Uncharacterized protein CG5902 confidentQ9VCF0
Uncharacterized protein At2g38710 confidentQ9ZVJ2
Uncharacterized protein R166.3 confidentQ22004

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0009651 [BP]response to salt stressprobableGO:0008150, GO:0009628, GO:0006950, GO:0006970, GO:0050896
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WSC, chain A
Confidence level:very confident
Coverage over the Query: 40-221
View the alignment between query and template
View the model in PyMOL