Psyllid ID: psy1882

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MSSSCCGTKKQKLNNSTGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccccccEEEccccccHHHHHHHHHHHHHHcccccccccHHHHcccEEEEEEEcccccccccccccccEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEEEEEEEEEEEHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEccccccccEcccccccccHHHHHHHHHHHHHHcccccccccHHHcccEEEEEEEEccccccccccccEEcccEEEEEEEcccccEEEEcccccHHHHccccHHHHHHHHHHHccccccccHHHHccEEEEEEEcEEEEEcHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msssccgtkkqklnnstgvvcnghgltnghgpsssvdkiaqpemcFFCFDVLYChlhsleppnppsgisndafplfvtwkigkdqrlrgcigtfnainlhgglreyavtsafkdsrfnpitvdefsKLHVSVSILRhfedgndytdwkigvhGIRIEfhnergnkrtatylpevapeqgwdQIQTIDSLLrkggfkgpitpdircnIKLTRYQSELVSVSYQDYLNHWKNGQC
Flexible Loop (DISEMBL)
msssccgtkkqklnnsTGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRiefhnergnKRTATylpevapeqgWDQIQTIDSLLRkggfkgpitpdircNIKLTRYQSELVSVSYQDYLNHWKNGQC
Low Complexity Region (SEG)
MSSSCCGTKKQKLNNSTGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC
Disordered region (IsUnstruct)
******************************************EMCFFCFDVLYCHLHSL********ISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHW*****
Disordered Region (DISOPRED)
***S**G************************************MCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNG**
Disordered Region (DISEMBL)
***********KLNNSTGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC
Disordered Region (DISPRO)
*****C**********TGV*C****************KIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSCCGTKKQKLNNSTGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q9JHT5	344	AMME syndrome candidate g	yes	N/A	0.824	0.558	0.658	4e-72
Q5RAS7	333	AMME syndrome candidate g	yes	N/A	0.824	0.576	0.658	5e-72
Q9Y4X0	333	AMME syndrome candidate g	yes	N/A	0.824	0.576	0.658	5e-72
Q8JZZ6	310	AMMECR1-like protein OS=M	no	N/A	0.819	0.616	0.656	5e-72
Q5RDQ3	310	AMMECR1-like protein OS=P	no	N/A	0.798	0.6	0.668	8e-72
Q6DCA0	310	AMMECR1-like protein OS=H	no	N/A	0.798	0.6	0.668	8e-72
Q9VCF0	243	Uncharacterized protein C	yes	N/A	0.832	0.798	0.628	2e-71
Q9ZVJ2	214	Uncharacterized protein A	yes	N/A	0.806	0.878	0.489	6e-47
Q22004	200	Uncharacterized protein R	yes	N/A	0.802	0.935	0.462	2e-44
Q9P6M2	193	Uncharacterized protein C	yes	N/A	0.785	0.948	0.378	2e-30

>sp|Q9JHT5|AMMR1_MOUSE AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1

 Score =  270 bits (691), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 153/193 (79%), Gaps = 1/193 (0%)

Query: 35  SVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTF 94
           S   +   EMC FCFDVLYCHL+  + P  P   +N+ +PLFVTWKIG+D+RLRGCIGTF
Sbjct: 132 SRKMVVSAEMCCFCFDVLYCHLYGYQQPRTPR-FTNEPYPLFVTWKIGRDKRLRGCIGTF 190

Query: 95  NAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGI 154
           +A+NLH GLREY +TSA KDSRF P+T DE  +L  SVS+L +FED  DY DW++GVHGI
Sbjct: 191 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 250

Query: 155 RIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQS 214
           RIEF NE+G+KRTATYLPEVA EQGWD IQTIDSLLRKGG+K PIT + R  IKLTRY+S
Sbjct: 251 RIEFINEKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRS 310

Query: 215 ELVSVSYQDYLNH 227
           E +++SY +YL H
Sbjct: 311 EKMTLSYAEYLAH 323

Mus musculus (taxid: 10090)

>sp|Q5RAS7|AMMR1_PONAB AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1

 Score =  270 bits (691), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 153/193 (79%), Gaps = 1/193 (0%)

Query: 35  SVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTF 94
           S   +   EMC FCFDVLYCHL+  + P  P   +N+ +PLFVTWKIG+D+RLRGCIGTF
Sbjct: 121 SRKMVVSAEMCCFCFDVLYCHLYGYQQPRTPR-FTNEPYPLFVTWKIGRDKRLRGCIGTF 179

Query: 95  NAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGI 154
           +A+NLH GLREY +TSA KDSRF P+T DE  +L  SVS+L +FED  DY DW++GVHGI
Sbjct: 180 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 239

Query: 155 RIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQS 214
           RIEF NE+G+KRTATYLPEVA EQGWD IQTIDSLLRKGG+K PIT + R  IKLTRY+S
Sbjct: 240 RIEFINEKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRS 299

Query: 215 ELVSVSYQDYLNH 227
           E +++SY +YL H
Sbjct: 300 EKMTLSYAEYLAH 312

Pongo abelii (taxid: 9601)

>sp|Q9Y4X0|AMMR1_HUMAN AMME syndrome candidate gene 1 protein OS=Homo sapiens GN=AMMECR1 PE=2 SV=1

 Score =  270 bits (691), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/193 (65%), Positives = 153/193 (79%), Gaps = 1/193 (0%)

Query: 35  SVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTF 94
           S   +   EMC FCFDVLYCHL+  + P  P   +N+ +PLFVTWKIG+D+RLRGCIGTF
Sbjct: 121 SRKMVVSAEMCCFCFDVLYCHLYGYQQPRTPR-FTNEPYPLFVTWKIGRDKRLRGCIGTF 179

Query: 95  NAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGI 154
           +A+NLH GLREY +TSA KDSRF P+T DE  +L  SVS+L +FED  DY DW++GVHGI
Sbjct: 180 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 239

Query: 155 RIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQS 214
           RIEF NE+G+KRTATYLPEVA EQGWD IQTIDSLLRKGG+K PIT + R  IKLTRY+S
Sbjct: 240 RIEFINEKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRS 299

Query: 215 ELVSVSYQDYLNH 227
           E +++SY +YL H
Sbjct: 300 EKMTLSYAEYLAH 312

Homo sapiens (taxid: 9606)

>sp|Q8JZZ6|AMERL_MOUSE AMMECR1-like protein OS=Mus musculus GN=Ammecr1l PE=2 SV=1

 Score =  270 bits (691), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 153/192 (79%), Gaps = 1/192 (0%)

Query: 34  SSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGT 93
           S+ + +   EMC +CFDVLYCHL+    P  P   +ND +PLFVTWK G+D+RLRGCIGT
Sbjct: 98  STKNLVVTAEMCCYCFDVLYCHLYGFPQPRLPR-FTNDPYPLFVTWKTGRDKRLRGCIGT 156

Query: 94  FNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHG 153
           F+A+NLH GLREY +TSA KDSRF P+T +E  KL  SVS+L +FED +DY DW++GVHG
Sbjct: 157 FSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHG 216

Query: 154 IRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQ 213
           IRIEF NE+G KRTATYLPEVA EQ WDQIQTIDSLLRKGGFK PIT + R +IKLTRY+
Sbjct: 217 IRIEFINEKGIKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKSIKLTRYR 276

Query: 214 SELVSVSYQDYL 225
           SE V++SY +Y+
Sbjct: 277 SEKVTISYAEYI 288

Mus musculus (taxid: 10090)

>sp|Q5RDQ3|AMERL_PONAB AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L PE=2 SV=1

 Score =  270 bits (689), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 149/187 (79%), Gaps = 1/187 (0%)

Query: 39  IAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAIN 98
           +   EMC +CFDVLYCHL+    P  P   +ND +PLFVTWK G+D+RLRGCIGTF+A+N
Sbjct: 103 VVTAEMCCYCFDVLYCHLYGFPQPRLPR-FTNDPYPLFVTWKTGRDKRLRGCIGTFSAMN 161

Query: 99  LHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEF 158
           LH GLREY +TSA KDSRF P+T +E  KL  SVS+L +FED +DY DW++GVHGIRIEF
Sbjct: 162 LHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEF 221

Query: 159 HNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVS 218
            NE+G KRTATYLPEVA EQ WDQIQTIDSLLRKGGFK PIT + R  IKLTRY+SE V+
Sbjct: 222 INEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVT 281

Query: 219 VSYQDYL 225
           +SY +Y+
Sbjct: 282 ISYAEYI 288

Pongo abelii (taxid: 9601)

>sp|Q6DCA0|AMERL_HUMAN AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L PE=1 SV=1

 Score =  270 bits (689), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 149/187 (79%), Gaps = 1/187 (0%)

Query: 39  IAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAIN 98
           +   EMC +CFDVLYCHL+    P  P   +ND +PLFVTWK G+D+RLRGCIGTF+A+N
Sbjct: 103 VVTAEMCCYCFDVLYCHLYGFPQPRLPR-FTNDPYPLFVTWKTGRDKRLRGCIGTFSAMN 161

Query: 99  LHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEF 158
           LH GLREY +TSA KDSRF P+T +E  KL  SVS+L +FED +DY DW++GVHGIRIEF
Sbjct: 162 LHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEF 221

Query: 159 HNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVS 218
            NE+G KRTATYLPEVA EQ WDQIQTIDSLLRKGGFK PIT + R  IKLTRY+SE V+
Sbjct: 222 INEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSEKVT 281

Query: 219 VSYQDYL 225
           +SY +Y+
Sbjct: 282 ISYAEYI 288

Homo sapiens (taxid: 9606)

>sp|Q9VCF0|Y5902_DROME Uncharacterized protein CG5902 OS=Drosophila melanogaster GN=CG5902 PE=2 SV=1

 Score =  268 bits (686), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 161/199 (80%), Gaps = 5/199 (2%)

Query: 26  LTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQ 85
            +NGHG    +  +A P+MC FCF+VL C L++++ P+ P   SNDA+PLFVTWKIG+D+
Sbjct: 35  FSNGHG----MKTVAVPDMCLFCFEVLDCELNNVDGPSVPV-FSNDAYPLFVTWKIGRDK 89

Query: 86  RLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYT 145
           RLRGCIGTF+A+ LH GLREYA+TSAFKDSRF PI+ DE  +L VSVSIL++FE+   + 
Sbjct: 90  RLRGCIGTFSAMELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHL 149

Query: 146 DWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRC 205
           DW++GVHGIRIEF  ERG KRTATYLP+VA EQGWDQ+QTIDSLLRKGG++  ITP+ R 
Sbjct: 150 DWQLGVHGIRIEFLTERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRK 209

Query: 206 NIKLTRYQSELVSVSYQDY 224
           +IKLTRY+S+ + + Y++Y
Sbjct: 210 SIKLTRYRSQEIQMHYKEY 228

Drosophila melanogaster (taxid: 7227)

>sp|Q9ZVJ2|AMERL_ARATH Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1

 Score =  187 bits (475), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 119/194 (61%), Gaps = 6/194 (3%)

Query: 40  AQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKI---GKDQRLRGCIGTFNA 96
           A  EM  +CFD L  H ++ E   PP        PLFVTWK    G + RLRGCIGT  A
Sbjct: 4   ANREMAVYCFDTLVSHYNNEE--TPPPAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLEA 61

Query: 97  INLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRI 156
             L  G ++YA+TSA +D RF PI   E   L  +VS+L  +ED  DY DW++G HGI I
Sbjct: 62  RRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGIII 121

Query: 157 EFHN-ERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSE 215
           EF   E   KR+ATYLPEV   +GW +I+ IDSL+RK G+ G IT  +R  I LTRYQS 
Sbjct: 122 EFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQST 181

Query: 216 LVSVSYQDYLNHWK 229
           L S+ Y +YL++ K
Sbjct: 182 LFSMHYSEYLSYVK 195

Arabidopsis thaliana (taxid: 3702)

>sp|Q22004|AMERL_CAEEL Uncharacterized protein R166.3 OS=Caenorhabditis elegans GN=R166.3 PE=4 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 121/188 (64%), Gaps = 1/188 (0%)

Query: 40  AQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINL 99
           A  +M  +CFDV+   L+  + P  P  I N   PLFVTWK G    LRGCIGTF+ + L
Sbjct: 4   ANIQMAVYCFDVINAQLNREKEPPVPKEIPNVKLPLFVTWKKGHQHDLRGCIGTFSDLRL 63

Query: 100 HGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFH 159
             GL EYA TSAF DSRF PI+ +E   L   VS+L +FE  +++ DW IG HG+R+ F 
Sbjct: 64  GEGLNEYAKTSAFHDSRFKPISREEVPSLQCGVSLLINFEPIHNFRDWTIGRHGVRMNFD 123

Query: 160 NERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSV 219
           +   N R+A +LPEVA EQGW+ ++TID L+RK G+ G I   +R  +++ R+QS  + +
Sbjct: 124 DGHRN-RSAVFLPEVAQEQGWNHVETIDHLIRKSGYGGHINDALRSALRIVRFQSSKLVL 182

Query: 220 SYQDYLNH 227
            Y+DY+N+
Sbjct: 183 DYKDYVNY 190

Caenorhabditis elegans (taxid: 6239)

>sp|Q9P6M2|YKQ3_SCHPO Uncharacterized protein C688.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC688.03c PE=4 SV=2

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 113/190 (59%), Gaps = 7/190 (3%)

Query: 41  QPEMCFFCFDVLYCHLHSLEPPNPPSGIS-NDAFPLFVTWKIGK--DQRLRGCIGTFNAI 97
           + E C++CF+V+   L   +  +  +  S   + PLFV +  GK  D++LRGCIGTF A 
Sbjct: 3   KKEYCYYCFEVVAATLEHRKVRDKWNAKSWTRSIPLFVKFASGKGHDKQLRGCIGTFRAR 62

Query: 98  NLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIE 157
            L   L  ++  +AF D RF PI++ E + L   + +L  FE  +D  DW++G+HG+ I+
Sbjct: 63  PLVTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIK 122

Query: 158 FHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELV 217
           F    G + ++TYLP VA EQ WDQ +T++SL+ K G+ G I       I  TRY+S  +
Sbjct: 123 F-TANGIRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEI 178

Query: 218 SVSYQDYLNH 227
             +Y++YL++
Sbjct: 179 GCTYEEYLHN 188

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
328781946	230	PREDICTED: AMME syndrome candidate gene	0.987	1.0	0.746	4e-99
91093431	233	PREDICTED: similar to AMME chromosomal r	0.995	0.995	0.717	5e-97
307193176	567	AMMECR1-like protein [Harpegnathos salta	0.987	0.405	0.740	1e-96
332019000	232	AMMECR1-like protein [Acromyrmex echinat	0.987	0.991	0.736	1e-96
307173411	232	AMME syndrome candidate gene 1 protein-l	0.987	0.991	0.731	8e-96
242023639	319	conserved hypothetical protein [Pediculu	0.961	0.702	0.737	2e-94
340722132	232	PREDICTED: AMMECR1-like protein-like [Bo	0.982	0.987	0.721	7e-94
48097630	231	PREDICTED: AMMECR1-like protein-like [Ap	0.987	0.995	0.717	1e-93
380019850	231	PREDICTED: AMMECR1-like protein-like [Ap	0.987	0.995	0.713	3e-93
427787703	234	Hypothetical protein [Rhipicephalus pulc	0.995	0.991	0.693	8e-92

>gi|328781946|ref|XP_393841.3| PREDICTED: AMME syndrome candidate gene 1 protein homolog isoform 1 [Apis mellifera] gi|380019848|ref|XP_003693813.1| PREDICTED: AMME syndrome candidate gene 1 protein homolog [Apis florea]

 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 174/233 (74%), Positives = 196/233 (84%), Gaps = 3/233 (1%)

Query: 1   MSSSCCGTKKQKLNNSTGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLE 60
           M++ CCGTKKQKLNNS+ V CNG  L NG    +SV  I +PEM FFCFDVLYC LH L+
Sbjct: 1   MAAGCCGTKKQKLNNSSSVPCNGSVLQNGTQLRNSV--IVKPEMGFFCFDVLYCQLHQLD 58

Query: 61  PPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPI 120
           PP PP+  SN+AFPLFVTW IGKD RLRGCIGTFNA+ LH GLREYA TSAFKDSRFNPI
Sbjct: 59  PPKPPN-FSNEAFPLFVTWTIGKDMRLRGCIGTFNAMQLHAGLREYATTSAFKDSRFNPI 117

Query: 121 TVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGW 180
           T DE  +LHVSVSILRHFEDG DY DW++GVHGIRIEFHNE+GNKRTATYLP+VA EQGW
Sbjct: 118 TRDELPRLHVSVSILRHFEDGIDYLDWEVGVHGIRIEFHNEKGNKRTATYLPDVATEQGW 177

Query: 181 DQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
           DQIQTIDSLL KGG+KG +TPDIR ++KLTRYQSE V+VSYQDY+ HW + +C
Sbjct: 178 DQIQTIDSLLHKGGYKGLVTPDIRRSVKLTRYQSEKVTVSYQDYMTHWHSRRC 230

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093431|ref|XP_969079.1| PREDICTED: similar to AMME chromosomal region gene 1-like [Tribolium castaneum] gi|270015455|gb|EFA11903.1| hypothetical protein TcasGA2_TC004060 [Tribolium castaneum]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 168/234 (71%), Positives = 199/234 (85%), Gaps = 2/234 (0%)

Query: 1   MSSSCCGTKKQKLNNSTGV-VCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSL 59
           M++ CCGTKKQKLNNS+ V  CNG  + +   PS+    +A PEMCFFCFDVLYCHL++L
Sbjct: 1   MAAGCCGTKKQKLNNSSSVPSCNGGPVVSNGLPSNGTGMVALPEMCFFCFDVLYCHLYNL 60

Query: 60  EPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNP 119
            PP  PS  SNDA+PLFVTWKIGKD+RLRGCIGTFNA+NL  GLREYAVTSAFKDSRF+P
Sbjct: 61  APPKTPS-FSNDAYPLFVTWKIGKDKRLRGCIGTFNAMNLQSGLREYAVTSAFKDSRFSP 119

Query: 120 ITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQG 179
           +T +EF KL VSVSILRHFEDG+DY DW++GVHGIRIEF NE+GNKRTATYLPEVA EQG
Sbjct: 120 VTREEFPKLSVSVSILRHFEDGDDYLDWEVGVHGIRIEFINEKGNKRTATYLPEVASEQG 179

Query: 180 WDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
           WDQ+QTIDSLLRKGG+K  I+ ++R +IKLTRYQSE ++V+YQDY+NHW + +C
Sbjct: 180 WDQLQTIDSLLRKGGYKSVISNEVRRSIKLTRYQSEKITVTYQDYMNHWNSQRC 233

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193176|gb|EFN76081.1| AMMECR1-like protein [Harpegnathos saltator]

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 174/235 (74%), Positives = 197/235 (83%), Gaps = 5/235 (2%)

Query: 1   MSSSCCGTKKQKLNN-STGVVCNGHG-LTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHS 58
           M++ CCGTKKQKLNN STG  CNG   L+NG    ++   I QPEM F+CFDVLYC LH 
Sbjct: 336 MAAGCCGTKKQKLNNNSTGAPCNGTTVLSNGTRIRNT--PIVQPEMGFYCFDVLYCQLHQ 393

Query: 59  LEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFN 118
           L+PP PP+  SN+AFPLFVTW IGKD RLRGCIGTFNA++LH GLREYA TSAFKDSRFN
Sbjct: 394 LDPPKPPN-FSNEAFPLFVTWTIGKDMRLRGCIGTFNAMHLHAGLREYATTSAFKDSRFN 452

Query: 119 PITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQ 178
           PIT +E  +LHVSVSILRHFEDG DY DW+IGVHGIRIEFHNE+GNKRTATYLP+VA EQ
Sbjct: 453 PITREELPRLHVSVSILRHFEDGVDYLDWEIGVHGIRIEFHNEKGNKRTATYLPDVATEQ 512

Query: 179 GWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
           GWDQIQTIDSLL KGG+KG +TPDIR ++KLTRYQSE V+VSYQDY+ HW N +C
Sbjct: 513 GWDQIQTIDSLLHKGGYKGLVTPDIRRSLKLTRYQSEKVTVSYQDYMTHWHNRRC 567

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019000|gb|EGI59539.1| AMMECR1-like protein [Acromyrmex echinatior]

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/235 (73%), Positives = 197/235 (83%), Gaps = 5/235 (2%)

Query: 1   MSSSCCGTKKQKLNN-STGVVCNGHG-LTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHS 58
           M++ CCGTKKQKLNN S GV CNG   L+NG    ++   I QPEM F+CFDVLYC LH 
Sbjct: 1   MAAGCCGTKKQKLNNNSAGVPCNGTAVLSNGTRIRNT--PIVQPEMGFYCFDVLYCQLHQ 58

Query: 59  LEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFN 118
           L+PP PP+  SN+AFPLFVTW IGKD RLRGCIGTFNA++LH GLREYA TSAFKDSRFN
Sbjct: 59  LDPPKPPN-FSNEAFPLFVTWTIGKDMRLRGCIGTFNAMHLHAGLREYATTSAFKDSRFN 117

Query: 119 PITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQ 178
           PIT +E  +LHVSVSILRHFEDG DY DW+IGVHGIRIEFHNE+GNKRTATYLP+VA EQ
Sbjct: 118 PITREELPRLHVSVSILRHFEDGVDYLDWEIGVHGIRIEFHNEKGNKRTATYLPDVATEQ 177

Query: 179 GWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
           GWDQIQTIDSLL KGG+KG +TPDIR ++KLTRYQSE ++VSYQDY+ HW N +C
Sbjct: 178 GWDQIQTIDSLLHKGGYKGLVTPDIRRSVKLTRYQSEKITVSYQDYMTHWHNRRC 232

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173411|gb|EFN64367.1| AMME syndrome candidate gene 1 protein-like protein [Camponotus floridanus]

 Score =  355 bits (911), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 172/235 (73%), Positives = 197/235 (83%), Gaps = 5/235 (2%)

Query: 1   MSSSCCGTKKQKLNNS-TGVVCNGHG-LTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHS 58
           M++ CCGTKKQKLNN+ TG  CNG   L+NG    ++   I QPEM F+CFDVLYC LH 
Sbjct: 1   MAAGCCGTKKQKLNNNPTGAPCNGTTVLSNGTRIRNT--PIVQPEMGFYCFDVLYCQLHQ 58

Query: 59  LEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFN 118
           L+PP PP+  SN+AFPLFVTW IGKD RLRGCIGTFNA++LH GLREYA TSAFKDSRFN
Sbjct: 59  LDPPKPPN-FSNEAFPLFVTWTIGKDMRLRGCIGTFNAMHLHAGLREYATTSAFKDSRFN 117

Query: 119 PITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQ 178
           PIT +E  +LHVSVSILRHFEDG DY DW+IGVHGIRIEFHNE+GNKRTATYLP+VA EQ
Sbjct: 118 PITREELPRLHVSVSILRHFEDGVDYLDWEIGVHGIRIEFHNEKGNKRTATYLPDVATEQ 177

Query: 179 GWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
           GWDQIQTIDSLL KGG+KG +TPDIR ++KLTRYQSE ++VSYQDY+ HW N +C
Sbjct: 178 GWDQIQTIDSLLHKGGYKGLVTPDIRRSVKLTRYQSEKITVSYQDYMTHWHNRRC 232

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023639|ref|XP_002432239.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517641|gb|EEB19501.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 169/229 (73%), Positives = 196/229 (85%), Gaps = 5/229 (2%)

Query: 1   MSSSCCGTKKQKLNN-STGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSL 59
           M++ CCGTKKQKLNN S+ + CNG+ +   +G  + +  +A PEMC+FCFDVLY HL+SL
Sbjct: 1   MAAGCCGTKKQKLNNNSSSLTCNGNSVIQ-NGLKNKM--VAHPEMCYFCFDVLYSHLNSL 57

Query: 60  EPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNP 119
           EPP  P+  SND +PLFVTWKIGKD+RLRGCIGTFNA+NLH GLREYAVTSA KDSRF+P
Sbjct: 58  EPPKTPN-FSNDPYPLFVTWKIGKDRRLRGCIGTFNAMNLHSGLREYAVTSALKDSRFSP 116

Query: 120 ITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQG 179
           IT DEF KL+VSVSILRHFEDG DY DW++G+HGIRIEFHNE+GNK+TATYLPEVA EQG
Sbjct: 117 ITRDEFPKLYVSVSILRHFEDGADYLDWEVGLHGIRIEFHNEKGNKKTATYLPEVATEQG 176

Query: 180 WDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHW 228
           WDQIQTIDSLLRKGGFKG +TP+IR NIKLTRYQSE ++VSYQDY   W
Sbjct: 177 WDQIQTIDSLLRKGGFKGSVTPEIRRNIKLTRYQSEKITVSYQDYQIFW 225

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722132|ref|XP_003399463.1| PREDICTED: AMMECR1-like protein-like [Bombus terrestris]

 Score =  348 bits (894), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 168/233 (72%), Positives = 192/233 (82%), Gaps = 4/233 (1%)

Query: 2   SSSCCGTKKQKLNNSTGVVCNGH-GLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLE 60
           ++ CCGTKKQKLN+ST +  N    L NG    +S+  IAQPEM F+CFDVLYC LH L+
Sbjct: 3   AAGCCGTKKQKLNDSTSIPRNNTVSLQNGIRIRNSI--IAQPEMGFYCFDVLYCQLHQLD 60

Query: 61  PPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPI 120
           PP PP+  SN+AFPLFVTW  GKD RLRGCIGTFNA+ LH GLREYA TSAFKDSRFNPI
Sbjct: 61  PPKPPN-FSNEAFPLFVTWTTGKDMRLRGCIGTFNAMQLHAGLREYATTSAFKDSRFNPI 119

Query: 121 TVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGW 180
           T++E  +LHVSVSILRHFEDG DY DW IGVHGIRIEFHNE+GNKRTATYLP+VA EQGW
Sbjct: 120 TLEELPRLHVSVSILRHFEDGADYLDWIIGVHGIRIEFHNEKGNKRTATYLPDVAIEQGW 179

Query: 181 DQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
            QI+TIDSLL KGG+KG +TPDIR ++KLTRYQSE V+VSYQDYL HW+  +C
Sbjct: 180 SQIETIDSLLHKGGYKGLVTPDIRRSLKLTRYQSEKVTVSYQDYLTHWQGRRC 232

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48097630|ref|XP_393840.1| PREDICTED: AMMECR1-like protein-like [Apis mellifera]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 168/234 (71%), Positives = 192/234 (82%), Gaps = 4/234 (1%)

Query: 1   MSSSCCGTKKQKLNNSTGVVCNGH-GLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSL 59
           M++ CCGTKKQKLN+ST V  N    L N     +S+  I QPEM F+CFDVLYC LH L
Sbjct: 1   MAAGCCGTKKQKLNDSTSVPRNNTVSLQNSIHMRNSI--IVQPEMGFYCFDVLYCQLHQL 58

Query: 60  EPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNP 119
           +PP PP+  SN+AFPLFVTW IGKD RLRGCIGTFNA++LH GLREYA TSAFKDSRFNP
Sbjct: 59  DPPKPPN-FSNEAFPLFVTWTIGKDMRLRGCIGTFNAMHLHAGLREYATTSAFKDSRFNP 117

Query: 120 ITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQG 179
           IT++E  +LHVSVSILRHFEDG DY DW IGVHGIRIEFHNE+GNKRTATYLP+VA EQG
Sbjct: 118 ITLEELPRLHVSVSILRHFEDGADYLDWIIGVHGIRIEFHNEKGNKRTATYLPDVAIEQG 177

Query: 180 WDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
           W+QIQTIDSLL KGG+KG +TPDIR ++KLTRYQSE V+VSYQDY+  W   +C
Sbjct: 178 WNQIQTIDSLLHKGGYKGLVTPDIRRSVKLTRYQSEKVTVSYQDYMTRWHGQRC 231

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019850|ref|XP_003693814.1| PREDICTED: AMMECR1-like protein-like [Apis florea]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 167/234 (71%), Positives = 192/234 (82%), Gaps = 4/234 (1%)

Query: 1   MSSSCCGTKKQKLNNSTGVVCNGH-GLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSL 59
           M++ CCGTKKQKLN+ST +  N    L N     +S+  I QPEM F+CFDVLYC LH L
Sbjct: 1   MAAGCCGTKKQKLNDSTSIPRNNTVSLQNNIHMRNSI--IVQPEMGFYCFDVLYCQLHQL 58

Query: 60  EPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNP 119
           +PP PP+  SN+AFPLFVTW IGKD RLRGCIGTFNA++LH GLREYA TSAFKDSRFNP
Sbjct: 59  DPPKPPN-FSNEAFPLFVTWTIGKDMRLRGCIGTFNAMHLHAGLREYATTSAFKDSRFNP 117

Query: 120 ITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQG 179
           IT++E  +LHVSVSILRHFEDG DY DW IGVHGIRIEFHNE+GNKRTATYLP+VA EQG
Sbjct: 118 ITLEELPRLHVSVSILRHFEDGADYLDWIIGVHGIRIEFHNEKGNKRTATYLPDVAIEQG 177

Query: 180 WDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
           W+QIQTIDSLL KGG+KG +TPDIR ++KLTRYQSE V+VSYQDY+  W   +C
Sbjct: 178 WNQIQTIDSLLHKGGYKGLVTPDIRRSVKLTRYQSEKVTVSYQDYMTRWHGQRC 231

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787703|gb|JAA59303.1| Hypothetical protein [Rhipicephalus pulchellus]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 163/235 (69%), Positives = 191/235 (81%), Gaps = 3/235 (1%)

Query: 1   MSSSCCGTKKQKLNNSTGVVCNGHGLTNGHGPSSSVDK--IAQPEMCFFCFDVLYCHLHS 58
           M++ CCG KKQK+NN++   CNG  +   H   S      +   EMCFFCFDVLYCHL+ 
Sbjct: 1   MAAGCCGAKKQKMNNNSSPCCNGTIVHPNHFQPSLYKNGMVVCVEMCFFCFDVLYCHLNQ 60

Query: 59  LEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFN 118
            EPP PP+   N+ +PLFVTW IGKD+RLRGCIGTFNA+NLH GLREYAVTSAFKDSRF+
Sbjct: 61  YEPPKPPN-FPNECYPLFVTWNIGKDKRLRGCIGTFNAMNLHSGLREYAVTSAFKDSRFS 119

Query: 119 PITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQ 178
           PIT DEF+KLHVSVSILRHFEDGNDY DW+IG+HGIRIEF  E+G+KRTATYLPEVAPEQ
Sbjct: 120 PITRDEFNKLHVSVSILRHFEDGNDYMDWEIGIHGIRIEFLTEKGSKRTATYLPEVAPEQ 179

Query: 179 GWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNGQC 233
           GWD +QTIDSLLRKGG+KG I+ D+R +I LTRYQSE VS+SYQ+Y + W+N QC
Sbjct: 180 GWDHVQTIDSLLRKGGYKGSISNDMRKSIHLTRYQSEKVSISYQEYRDFWRNRQC 234

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
MGI|MGI:1860206	344	Ammecr1 "Alport syndrome, ment	0.905	0.613	0.608	3.2e-73
UNIPROTKB|Q9Y4X0	333	AMMECR1 "AMME syndrome candida	0.806	0.564	0.666	4.1e-73
MGI|MGI:2442711	310	Ammecr1l "AMME chromosomal reg	0.901	0.677	0.604	1.8e-72
ZFIN|ZDB-GENE-040426-1533	371	ammecr1 "Alport syndrome, ment	0.978	0.614	0.597	6.7e-72
FB|FBgn0039136	243	CG5902 [Drosophila melanogaste	0.828	0.794	0.631	3.6e-66
TAIR|locus:2064189	214	AT2G38710 [Arabidopsis thalian	0.806	0.878	0.494	3.1e-44
DICTYBASE|DDB_G0283437	206	DDB_G0283437 "AMMECR1 family p	0.832	0.941	0.470	4.8e-39
ASPGD|ASPL0000039689	343	AN3064 [Emericella nidulans (t	0.553	0.376	0.488	9.9e-31
POMBASE|SPAC688.03c	193	SPAC688.03c "human AMMECR1 hom	0.776	0.937	0.382	4.9e-30
SGD|S000005815	251	YOR289W "Putative protein of u	0.686	0.637	0.338	4.9e-24

MGI|MGI:1860206 Ammecr1 "Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1" [Mus musculus (taxid:10090)]

 Score = 691 (248.3 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
 Identities = 129/212 (60%), Positives = 157/212 (74%)

Query:    16 STGVVCNGHGLTNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPL 75
             ST         ++      S   +   EMC FCFDVLYCHL+  + P  P   +N+ +PL
Sbjct:   113 STPAAATASSPSSSSSSPGSRKMVVSAEMCCFCFDVLYCHLYGYQQPRTPR-FTNEPYPL 171

Query:    76 FVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSIL 135
             FVTWKIG+D+RLRGCIGTF+A+NLH GLREY +TSA KDSRF P+T DE  +L  SVS+L
Sbjct:   172 FVTWKIGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLL 231

Query:   136 RHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGF 195
              +FED  DY DW++GVHGIRIEF NE+G+KRTATYLPEVA EQGWD IQTIDSLLRKGG+
Sbjct:   232 TNFEDVCDYLDWEVGVHGIRIEFINEKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGY 291

Query:   196 KGPITPDIRCNIKLTRYQSELVSVSYQDYLNH 227
             K PIT + R  IKLTRY+SE +++SY +YL H
Sbjct:   292 KAPITNEFRKTIKLTRYRSEKMTLSYAEYLAH 323

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y4X0 AMMECR1 "AMME syndrome candidate gene 1 protein" [Homo sapiens (taxid:9606)]

 Score = 690 (248.0 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
 Identities = 126/189 (66%), Positives = 152/189 (80%)

Query:    39 IAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAIN 98
             +   EMC FCFDVLYCHL+  + P  P   +N+ +PLFVTWKIG+D+RLRGCIGTF+A+N
Sbjct:   125 VVSAEMCCFCFDVLYCHLYGYQQPRTPR-FTNEPYPLFVTWKIGRDKRLRGCIGTFSAMN 183

Query:    99 LHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEF 158
             LH GLREY +TSA KDSRF P+T DE  +L  SVS+L +FED  DY DW++GVHGIRIEF
Sbjct:   184 LHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIRIEF 243

Query:   159 HNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVS 218
              NE+G+KRTATYLPEVA EQGWD IQTIDSLLRKGG+K PIT + R  IKLTRY+SE ++
Sbjct:   244 INEKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKAPITNEFRKTIKLTRYRSEKMT 303

Query:   219 VSYQDYLNH 227
             +SY +YL H
Sbjct:   304 LSYAEYLAH 312

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:2442711 Ammecr1l "AMME chromosomal region gene 1-like" [Mus musculus (taxid:10090)]

 Score = 690 (248.0 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
 Identities = 130/215 (60%), Positives = 163/215 (75%)

Query:    12 KLNNSTGVVCNGHGLTNGHGPSSSVDK-IAQPEMCFFCFDVLYCHLHSLEPPNPPSGISN 70
             ++N ++G +     L   +G ++S    +   EMC +CFDVLYCHL+    P  P   +N
Sbjct:    78 RMNTASGALSP---LPRPNGTANSTKNLVVTAEMCCYCFDVLYCHLYGFPQPRLPR-FTN 133

Query:    71 DAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHV 130
             D +PLFVTWK G+D+RLRGCIGTF+A+NLH GLREY +TSA KDSRF P+T +E  KL  
Sbjct:   134 DPYPLFVTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFC 193

Query:   131 SVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLL 190
             SVS+L +FED +DY DW++GVHGIRIEF NE+G KRTATYLPEVA EQ WDQIQTIDSLL
Sbjct:   194 SVSLLTNFEDASDYLDWEVGVHGIRIEFINEKGIKRTATYLPEVAKEQDWDQIQTIDSLL 253

Query:   191 RKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYL 225
             RKGGFK PIT + R +IKLTRY+SE V++SY +Y+
Sbjct:   254 RKGGFKAPITSEFRKSIKLTRYRSEKVTISYAEYI 288

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1533 ammecr1 "Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)" [Danio rerio (taxid:7955)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 141/236 (59%), Positives = 172/236 (72%)

Query:     2 SSSCCGTKKQKLNNSTGVVCNGHGLTNGHGPSSSVDK-IAQPEMCFFCFDVLYCHLHSLE 60
             S S  G     L+ + G   N  GL+    P S   K +   EMC FCFDVLYCHL+  +
Sbjct:   126 SGSSGGNNTNALSATPGGY-NSTGLSPTLSPGSGARKMVVSAEMCCFCFDVLYCHLYGYQ 184

Query:    61 PPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPI 120
             PP  P   +ND +PLFVTWKIG+D+RLRGCIGTF+A+NLH GLREY +TSA KDSRF P+
Sbjct:   185 PPRTPR-FTNDPYPLFVTWKIGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPM 243

Query:   121 TVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGW 180
             T DE  +L  SVS+L +FED  DY DW++GVHGIRIEF NE+G+KRTATYLPEVA EQGW
Sbjct:   244 TRDELPRLFCSVSLLTNFEDVGDYLDWEVGVHGIRIEFFNEKGSKRTATYLPEVAKEQGW 303

Query:   181 DQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDYL-----NHWKNG 231
             D IQTIDSLLRKGG+K PIT D R  IKLTRY+SE +++SY +Y+     +H++NG
Sbjct:   304 DHIQTIDSLLRKGGYKAPITNDFRKTIKLTRYRSEKMTMSYAEYIAHRQHHHYQNG 359

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0039136 CG5902 [Drosophila melanogaster (taxid:7227)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 125/198 (63%), Positives = 161/198 (81%)

Query:    27 TNGHGPSSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQR 86
             +NGHG  +    +A P+MC FCF+VL C L++++ P+ P   SNDA+PLFVTWKIG+D+R
Sbjct:    36 SNGHGMKT----VAVPDMCLFCFEVLDCELNNVDGPSVPV-FSNDAYPLFVTWKIGRDKR 90

Query:    87 LRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTD 146
             LRGCIGTF+A+ LH GLREYA+TSAFKDSRF PI+ DE  +L VSVSIL++FE+   + D
Sbjct:    91 LRGCIGTFSAMELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLD 150

Query:   147 WKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCN 206
             W++GVHGIRIEF  ERG KRTATYLP+VA EQGWDQ+QTIDSLLRKGG++  ITP+ R +
Sbjct:   151 WQLGVHGIRIEFLTERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYRAAITPETRKS 210

Query:   207 IKLTRYQSELVSVSYQDY 224
             IKLTRY+S+ + + Y++Y
Sbjct:   211 IKLTRYRSQEIQMHYKEY 228

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2064189 AT2G38710 [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 96/194 (49%), Positives = 121/194 (62%)

Query:    40 AQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKI---GKDQRLRGCIGTFNA 96
             A  EM  +CFD L  H ++ E P P    +N   PLFVTWK    G + RLRGCIGT  A
Sbjct:     4 ANREMAVYCFDTLVSHYNNEETPPPAFEEANH--PLFVTWKKIVNGGEPRLRGCIGTLEA 61

Query:    97 INLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRI 156
               L  G ++YA+TSA +D RF PI   E   L  +VS+L  +ED  DY DW++G HGI I
Sbjct:    62 RRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGIII 121

Query:   157 EFHN-ERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSE 215
             EF   E   KR+ATYLPEV   +GW +I+ IDSL+RK G+ G IT  +R  I LTRYQS 
Sbjct:   122 EFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSLVRKAGYNGVITEAVRRRINLTRYQST 181

Query:   216 LVSVSYQDYLNHWK 229
             L S+ Y +YL++ K
Sbjct:   182 LFSMHYSEYLSYVK 195

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0283437 DDB_G0283437 "AMMECR1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 95/202 (47%), Positives = 127/202 (62%)

Query:    33 SSSVDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGK---DQR-LR 88
             S+S  K A  EM  +CFD L  H  + +P   P   SN++ PLFVTWKI     D+  LR
Sbjct:     4 STSSTK-ATKEMVAYCFDSLIFHFEN-KPIYKPK-FSNESSPLFVTWKIDNKNYDEPILR 60

Query:    89 GCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWK 148
             GCIGTF   NL  GL ++A+TSA KDSRF+ IT  E +KLH +VS+L  FE  +   DW+
Sbjct:    61 GCIGTFAEKNLVEGLHKFALTSALKDSRFSAITKKELTKLHCAVSLLVKFETVDSVWDWE 120

Query:   149 IGVHGIRIEFHNERGNKRT-ATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNI 207
             IG HGI IEF +   N+ + +TYLP+V PEQ W + + I SL++K G+ G +  +    I
Sbjct:   121 IGTHGIWIEFTDPNTNQSSNSTYLPDVIPEQEWTKEEAIRSLIKKAGYNGKVDDNFFSLI 180

Query:   208 KLTRYQSELVSVSYQDYLNHWK 229
             KLTRYQS   S+SY ++L + K
Sbjct:   181 KLTRYQSSKDSLSYSEFLEYKK 202

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000039689 AN3064 [Emericella nidulans (taxid:162425)]

 Score = 307 (113.1 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 65/133 (48%), Positives = 83/133 (62%)

Query:    68 ISNDAFPLFVTWK-IGKDQR--LRGCIGTFNAINLHGGLREYAVTSAFKDSRFNPITVDE 124
             +S   +PLFVTW  + K  R  LRGCIGTF A  L  GL+ YA+TSAF D+RF+PI    
Sbjct:   137 LSEQKYPLFVTWNTLSKSGRKSLRGCIGTFEAQELSHGLKSYALTSAFDDTRFSPIPKSL 196

Query:   125 FSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQ 184
                L  S+++L  FE      DW +G HGIRI F + RG +  ATYLP+V  EQGW + +
Sbjct:   197 IPSLSCSLTLLGSFEPCTSALDWTLGTHGIRISFIH-RGRRFGATYLPDVPVEQGWTKEE 255

Query:   185 TIDSLLRKGGFKG 197
             TI SL+ K G+ G
Sbjct:   256 TIKSLMHKAGWDG 268

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC688.03c SPAC688.03c "human AMMECR1 homolog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 72/188 (38%), Positives = 112/188 (59%)

Query:    43 EMCFFCFDVLYCHLHSLEPPNPPSGIS-NDAFPLFVTWKIGK--DQRLRGCIGTFNAINL 99
             E C++CF+V+   L   +  +  +  S   + PLFV +  GK  D++LRGCIGTF A  L
Sbjct:     5 EYCYYCFEVVAATLEHRKVRDKWNAKSWTRSIPLFVKFASGKGHDKQLRGCIGTFRARPL 64

Query:   100 HGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFH 159
                L  ++  +AF D RF PI++ E + L   + +L  FE  +D  DW++G+HG+ I+F 
Sbjct:    65 VTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIKF- 123

Query:   160 NERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSV 219
                G + ++TYLP VA EQ WDQ +T++SL+ K G+ G I       I  TRY+S  +  
Sbjct:   124 TANGIRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEIGC 180

Query:   220 SYQDYLNH 227
             +Y++YL++
Sbjct:   181 TYEEYLHN 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

SGD|S000005815 YOR289W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 249 (92.7 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 63/186 (33%), Positives = 104/186 (55%)

Query:    70 NDAFPLFVTWK--------IGKDQR---LRGCIGTFNAINLHGGLREYAVTSAFKDSRFN 118
             N+   LF+TWK        I  ++    LRGCIGTF  + +  G+ +Y++ +A +D RF+
Sbjct:    64 NEKTSLFITWKKKSNKHHTIDTNEENYILRGCIGTFAKMPIAHGIEKYSLIAALEDRRFS 123

Query:   119 PITVDEFSKLHVSVSILRHFED-----GN---DYTDWKIGVHGIRIEF-HNERGNKRTAT 169
             PI   E   L  S +IL +F+      GN   D  DW++G HGI + F H + G   +AT
Sbjct:   124 PIQKRELVDLKCSCNILGNFKTIFRGGGNPNGDIFDWELGKHGIELYFKHPKTGTTCSAT 183

Query:   170 YLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCN-----IKLTRYQSELVSVSYQDY 224
             +LP+V PEQ W++  T  +L+ K G+ G I+ ++  N     I++ RY+ +  S++Y+++
Sbjct:   184 FLPDVMPEQHWNKEDTFANLIEKAGYWGNIS-EVMDNFETYFIEVIRYEGKKSSITYEEF 242

Query:   225 LNHWKN 230
                 K+
Sbjct:   243 NKQLKD 248

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RAS7	AMMR1_PONAB	No assigned EC number	0.6580	0.8240	0.5765	yes	N/A
Q9Y4X0	AMMR1_HUMAN	No assigned EC number	0.6580	0.8240	0.5765	yes	N/A
Q9ZVJ2	AMERL_ARATH	No assigned EC number	0.4896	0.8068	0.8785	yes	N/A
Q22004	AMERL_CAEEL	No assigned EC number	0.4627	0.8025	0.935	yes	N/A
Q12012	YO289_YEAST	No assigned EC number	0.3114	0.7811	0.7250	yes	N/A
Q9JHT5	AMMR1_MOUSE	No assigned EC number	0.6580	0.8240	0.5581	yes	N/A
Q9VCF0	Y5902_DROME	No assigned EC number	0.6281	0.8326	0.7983	yes	N/A
Q9P6M2	YKQ3_SCHPO	No assigned EC number	0.3789	0.7854	0.9481	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	233
pfam01871	172	pfam01871, AMMECR1, AMMECR1	2e-55
COG2078	203	COG2078, AMMECR1, Uncharacterized conserved protei	3e-31
TIGR04335	175	TIGR04335, AmmeMemoSam_A, AmmeMemoRadiSam system p	5e-30
TIGR00296	200	TIGR00296, TIGR00296, uncharacterized protein, PH0	2e-28
PRK00801	201	PRK00801, PRK00801, hypothetical protein; Provisio	1e-10
PRK03881	467	PRK03881, PRK03881, hypothetical protein; Provisio	1e-08

>gnl|CDD|216752 pfam01871, AMMECR1, AMMECR1

 Score =  174 bits (444), Expect = 2e-55
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 14/177 (7%)

Query: 44  MCFFCFDVLYCHLH---SLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAI-NL 99
           +     + +  +L     LEPP       N+   +FVT K  K   LRGCIGTF  +  L
Sbjct: 1   LVRLAREAIEAYLEGGKVLEPPPELPPKLNEKRGVFVTLK--KRGELRGCIGTFEPVRPL 58

Query: 100 HGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDY-TDWKIGVHGIRIEF 158
              + E A+ +AF+D RF P+T +E   L + VS+L   E  +    D ++G HG+ IEF
Sbjct: 59  AEAVIEAAIAAAFEDPRFPPVTEEELPDLTIEVSVLSPPEPIDVDLEDLEVGRHGLIIEF 118

Query: 159 HNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSE 215
               G       LP+VA EQGWD  + +  L RK G   P    +  ++++ R++++
Sbjct: 119 GGYSG-----LLLPQVAVEQGWDPEEFLAHLCRKAGL--PPDAWLDEDVEIYRFEAQ 168

This family consists of several AMMECR1 as well as several uncharacterized proteins. The contiguous gene deletion syndrome AMME is characterized by Alport syndrome, midface hypoplasia, mental retardation and elliptocytosis and is caused by a deletion in Xq22.3, comprising several genes including COL4A5, FACL4 and AMMECR1. This family contains sequences from several eukaryotic species as well as archaebacteria and it has been suggested that the AMMECR1 protein may have a basic cellular function, potentially in either the transcription, replication, repair or translation machinery. Length = 172

>gnl|CDD|224989 COG2078, AMMECR1, Uncharacterized conserved protein [Function unknown]

 Score =  113 bits (285), Expect = 3e-31
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 20/182 (10%)

Query: 45  CFFCFDVLYCHLHSLEPPNPPS--GISNDAFPLFVTW-KIGKDQRLRGCIGTFNAI-NLH 100
                + +  +L   +   P     +  +   +FVT  K   D  LRGCIGT   +  L 
Sbjct: 14  VRLAREAIENYLEGGKVIEPEPFPKLFQEKRGVFVTLEKYSPDGELRGCIGTPEPVKPLA 73

Query: 101 GGLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFE----DGNDYT-DWKIGVHGIR 155
             + + A+ +A  D RF P++++E   + V V+IL   E       +   D ++G HG+ 
Sbjct: 74  EAIIKAAIEAALSDPRFPPVSLEELDDIVVEVTILTPPEEIDVPPEERPEDIEVGRHGLI 133

Query: 156 IEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRC--NIKLTRYQ 213
           +E     G       LP+V  E  WD  + ++    K G    +  D     ++K+ R++
Sbjct: 134 VEKGIYSG-----LLLPQVPVEYRWDVEEFLEHTCEKAG----LPGDCWLDEDVKIYRFE 184

Query: 214 SE 215
           ++
Sbjct: 185 AQ 186

Length = 203

>gnl|CDD|234550 TIGR04335, AmmeMemoSam_A, AmmeMemoRadiSam system protein A

 Score =  109 bits (274), Expect = 5e-30
 Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 25/178 (14%)

Query: 50  DVLYCHLHSLEPPNPPSGISNDAFPL----FVTWKIGKDQRLRGCIGTFNAI-NLHGGLR 104
             +   L +   P                 FVT  + K+  LRGCIGT  A   L   + 
Sbjct: 9   QAIESALANGRLP-DIEPELPPKLNEKGGCFVT--LHKNGELRGCIGTIEADRPLVEDVA 65

Query: 105 EYAVTSAFKDSRFNPITVDEFSKLHVSVSILRH-----FEDGNDY-TDWKIGVHGIRIEF 158
           E A+ +AFKD RF P+T DE  +L + VS+L        ED  +   + + G  G+ +  
Sbjct: 66  ENAIAAAFKDPRFPPLTEDELDRLTIEVSVLSPPEPLPVEDEEELLEELRPGRDGLIL-- 123

Query: 159 HNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDI-RCNIKLTRYQSE 215
             E G +R   +LP+V  E   D    +  L  K G    + PD  +    + R+  E
Sbjct: 124 --EDGGRR-GLFLPQVWEELP-DPETFLRHLCLKAG----LPPDAWKDPTTIYRFTVE 173

Members of this protein family belong to the same domain family as AMMECR1, a mammalian protein named for AMME - Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis. Members of the present family occur as part of a three gene system with a homolog of the mammalian protein Memo (Mediator of ErbB2-driven cell MOtility), and an uncharacterized radical SAM enzyme. Length = 175

>gnl|CDD|232909 TIGR00296, TIGR00296, uncharacterized protein, PH0010 family

 Score =  106 bits (265), Expect = 2e-28
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 15/162 (9%)

Query: 46  FFCFDVLYCHLH---SLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAIN-LHG 101
            +    +  HL+   S         + N+   +F+T K   ++ LRGCIGT   +  L  
Sbjct: 14  RYARYAIESHLNGGKSSRLYPDLPIVFNEKRGVFITLKKKGNKHLRGCIGTPEPVMPLIE 73

Query: 102 GLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFE-----DGNDY-TDWKIGVHGIR 155
            + E A+++A +D RF P+ ++E   + V VSIL   E        DY  D +IG HG+ 
Sbjct: 74  AIEEAAISAATEDPRFPPVQLEELDDIKVEVSILTPPETIFVGGPKDYPFDIEIGRHGLI 133

Query: 156 IEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKG 197
           +EF  +RG       LP+VA E GWD  + + +L  K G   
Sbjct: 134 VEFGPKRG-----LLLPQVAVEYGWDAEEFLANLCMKAGLPP 170

Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii [Unknown function, General]. Length = 200

>gnl|CDD|234839 PRK00801, PRK00801, hypothetical protein; Provisional

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 59  LEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAIN-LHGGLREYAVTSAFKDSRF 117
           +EPP     +  +   +FVT  + K   LRGCIG     + L   + + A+++A +D RF
Sbjct: 30  IEPPKDLPPVFWEKRGVFVT--LNKHGVLRGCIGFPYPDSPLVEAIIDSAISAATRDPRF 87

Query: 118 NPITVDEFSKLHVSVSILRHFE--DGNDYT---DWKIGVHGIRIEFHNERGNKRTATYLP 172
            P+ ++E  ++ V V++L   E  +G         ++G HG+ ++     G       LP
Sbjct: 88  PPVKLEEMDEITVEVTVLTPPELIEGPPEELPEKIEVGRHGLIVKKGIYSG-----LLLP 142

Query: 173 EVAPEQGWDQIQ 184
           +VAPE G+D  +
Sbjct: 143 QVAPEWGFDSEE 154

Length = 201

>gnl|CDD|235170 PRK03881, PRK03881, hypothetical protein; Provisional

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 61  PPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTF--NAINLHGGLREYAVTSAFKDSRFN 118
           P   P  + N    +FV+ K  KD  LRGCIGT      N+   +   A+++  +D RF 
Sbjct: 323 PDYLPEEMLNRRAGVFVSLK--KDGELRGCIGTIFPTRENIAEEIIRNAISAGTEDPRFP 380

Query: 119 PITVDEFSKLHVSVSIL 135
           P+  DE   L  SV +L
Sbjct: 381 PVEEDELDDLVYSVDVL 397

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG3274|consensus	210		100.0
PF01871	171	AMMECR1: AMMECR1; InterPro: IPR002733 The contiguo	100.0
TIGR00296	200	uncharacterized protein, PH0010 family. Members of	100.0
PRK00801	201	hypothetical protein; Provisional	100.0
COG2078	203	AMMECR1 Uncharacterized conserved protein [Functio	100.0
PRK03881	467	hypothetical protein; Provisional	100.0

>KOG3274|consensus

Probab=100.00  E-value=1.5e-69  Score=463.60  Aligned_cols=196  Identities=61%  Similarity=1.063  Sum_probs=188.2

Q ss_pred             CCcccChhHHhHHHHHHHHhhcCCCCCCCCCCCCCCCCceEEEEEeCCCCcceeeeccCCCccHHHHHHHHHHHhhhcCC
Q psy1882          36 VDKIAQPEMCFFCFDVLYCHLHSLEPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAINLHGGLREYAVTSAFKDS  115 (233)
Q Consensus        36 ~~~~~~~~m~~~cfd~L~~~L~~~~~p~~p~~~~~~~~g~FVTl~~~~~g~LRGCIGt~~~~~L~~~i~~~Ai~AA~~Dp  115 (233)
                      ...+++.+||+||||+|.++|++.+.|..|+.+.+..+|+||||+++.+.+||||||||+++||+.++.+||+.|||+|.
T Consensus         9 ~~~~~~~~ma~ycF~vl~~~ln~~k~p~~~~~~~~~~~PLFvtwk~g~dkrLRGCIGTFsam~L~~Gl~eYaltsAl~Ds   88 (210)
T KOG3274|consen    9 EMTSANSEMAVYCFDVLYAHLNNEKSPSLPPDFRNRLYPLFVTWKKGHDKRLRGCIGTFSAMPLHSGLREYALTSALKDS   88 (210)
T ss_pred             cccccCcceEEEehhhhhhhhccccCCCcchhhhccCcceeEEeccCCCcccccceeehhhcchhhhHHHHHHHHHhhcc
Confidence            35678999999999999999998776665669999999999999998899999999999999999999999999999999


Q ss_pred             CCCCCChhccccceEEEEeeecccCCCCcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHHHHHhcCC
Q psy1882         116 RFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGF  195 (233)
Q Consensus       116 RF~Pl~~~EL~~L~ieVSvL~~~e~~~~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~l~~KaG~  195 (233)
                      ||+||+++||++|.|+||||++||++.|++||++|+|||+|+|.+++|.+|+|||||+||.||||||+++|++|+|||||
T Consensus        89 RF~PIsr~ELp~L~CsvslL~nFE~i~d~lDWevG~HGIrieF~~e~g~krsATyLPeVa~EQgWd~~eTidsLirKaGY  168 (210)
T KOG3274|consen   89 RFPPISREELPSLQCSVSLLTNFEDIFDYLDWEVGVHGIRIEFTNETGTKRSATYLPEVAAEQGWDQIETIDSLIRKAGY  168 (210)
T ss_pred             cCCCCChhhcCceEEEEEeeccchhcccccceeeccceEEEEEEcCCCcEeeeeecccchhhcCCcHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCceEEEEEEEEEEEeeHHHHHHHHhhC
Q psy1882         196 KGPITPDIRCNIKLTRYQSELVSVSYQDYLNHWKNG  231 (233)
Q Consensus       196 ~~~~~~~~~~~i~l~Ryqs~k~~~sy~ey~~~~~~~  231 (233)
                      +|.|++++++.|+++||++++++++|+||++.++.+
T Consensus       169 ~g~It~~~r~~I~ltRY~S~k~~~~Y~EY~~~~q~~  204 (210)
T KOG3274|consen  169 KGPITEELRKSIKLTRYRSEKISITYEEYLAYLQHH  204 (210)
T ss_pred             CCccCHHHHhheeeeEeeceeeeeeHHHHHHHHHhh
Confidence            999999999999999999999999999999999874

>PF01871 AMMECR1: AMMECR1; InterPro: IPR002733 The contiguous gene deletion syndrome is characterised by Alport syndrome (A), mental retardation (M), midface hypoplasia (M), and elliptocytosis (E), as well as generalized hypoplasia and cardiac abnormalities

Probab=100.00  E-value=7.3e-57  Score=381.93  Aligned_cols=165  Identities=38%  Similarity=0.598  Sum_probs=130.5

Q ss_pred             HHhHHHHHHHHhhcCCCC----CCCCCCCCCCCCceEEEEEeCCCCcceeeeccCCC-ccHHHHHHHHHHHhhhcCCCCC
Q psy1882          44 MCFFCFDVLYCHLHSLEP----PNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNA-INLHGGLREYAVTSAFKDSRFN  118 (233)
Q Consensus        44 m~~~cfd~L~~~L~~~~~----p~~p~~~~~~~~g~FVTl~~~~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~DpRF~  118 (233)
                      ||.+||++|.++|.+.+.    ++.++.+ .+++|+||||++  +|+||||||||.| +||+++|++||++|||+||||+
T Consensus         1 Ll~~Ar~ai~~~l~~~~~~~~~~~~~~~l-~~~~g~FVTl~~--~g~LRGCIGt~~p~~~L~~~v~~~A~~AA~~DpRF~   77 (171)
T PF01871_consen    1 LLRLAREAIESYLRGGPLPPPPPPLPPEL-SEPRGVFVTLKK--DGELRGCIGTFEPVRPLAEDVIENAIAAAFEDPRFP   77 (171)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCCCT--GGG-GSBEEEEEEEEE--CCCEEEEEEESSSESBHHHHHHHHHHHHHHT-TTS-
T ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCChhh-cCceeEEEEEEE--CCEEEEEeccCCcchhHHHHHHHHHHHHhhCCCCCC
Confidence            789999999999987552    2223344 669999999995  8999999999999 8999999999999999999999


Q ss_pred             CCChhccccceEEEEeeecccCCCCcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHHHHHhcCCCCC
Q psy1882         119 PITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGP  198 (233)
Q Consensus       119 Pl~~~EL~~L~ieVSvL~~~e~~~~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~l~~KaG~~~~  198 (233)
                      ||+.+||++|.|+||||++|+++.++.+|++|+|||+|++    |. |+||||||||.||+||+++||+++|+|||++  
T Consensus        78 Pl~~~El~~l~ieVSvL~~~~~i~~~~~~~~g~~Glil~~----~~-~~~~~LPqVa~E~~w~~~~fl~~l~~KAG~~--  150 (171)
T PF01871_consen   78 PLTPSELPELSIEVSVLSPPEPISDPEDWEPGRHGLILEF----GG-YRGTFLPQVAWEQGWDPEEFLRHLCRKAGLP--  150 (171)
T ss_dssp             ---GGGGGGEEEEEEEE---EE--GGGG--TTT-EEEEEE----TT-EEEEE-THHHHHTT--HHHHHHHHHHHTTS---
T ss_pred             CCCHHHHcccEEEEEeccCcEEcCCHHHcccCcceeEEEe----cC-cceEECCCchhhcCCCHHHHHHHHHHHCCCC--
Confidence            9999999999999999999999999999999999999996    54 6899999999999999999999999999996  


Q ss_pred             CCccc-CCceEEEEEEEEEEEe
Q psy1882         199 ITPDI-RCNIKLTRYQSELVSV  219 (233)
Q Consensus       199 ~~~~~-~~~i~l~Ryqs~k~~~  219 (233)
                       .+.| ..+++++|||+++|+.
T Consensus       151 -~~~w~~~~~~~~rf~~~~f~E  171 (171)
T PF01871_consen  151 -PDAWKSPDIKLYRFQAEVFSE  171 (171)
T ss_dssp             -TTCCCTTTSEEEEE-EEEEEE
T ss_pred             -ccccccCCeEEEEEEEEEEeC
Confidence             2334 5689999999999973

It is caused by a deletion in Xq22.3, comprising several genes including AMME chromosomal region gene 1 (AMMECR1), which encodes a protein with a nuclear location and presently unknown function. The C-terminal region of AMMECR1 (from residue 122 to 333) is well conserved, and homologues appear in species ranging from bacteria and archaea to eukaryotes. The high level of conservation of the AMMECR1 domain points to a basic cellular function, potentially in either the transcription, replication, repair or translation machinery [, ]. The AMMECR1 domain contains a 6-amino-acid motif (LRGCIG) that might be functionally important since it is strikingly conserved throughout evolution []. The AMMECR1 domain consists of two distinct subdomains of different sizes. The large subdomain, which contains both the N- and C-terminal regions, consists of five alpha-helices and five beta-strands. These five beta-strands form an antiparallel beta-sheet. The small subdomain consists of four alpha-helices and three beta-strands, and these beta-strands also form an antiparallel beta-sheet. The conserved 'LRGCIG' motif is located at beta(2) and its N-terminal loop, and most of the side chains of these residues point toward the interface of the two subdomains. The two subdomains are connected by only two loops, and the interaction between the two subdomains is not strong. Thus, these subdomains may move dynamically when the substrate enters the cleft. The size of the cleft suggests that the substrate is large, e.g., the substrate may be a nucleic acid or protein. However, the inner side of the cleft is not filled with positively charged residues, and therefore it is unlikely that negatively charged nucleic acids such as DNA or RNA interact at this site []. ; PDB: 1WSC_B 1VAJ_A 1ZQ7_D.

>TIGR00296 uncharacterized protein, PH0010 family

Probab=100.00  E-value=1.1e-54  Score=376.93  Aligned_cols=170  Identities=29%  Similarity=0.455  Sum_probs=147.2

Q ss_pred             ChhHHhHHHHHHHHhhcCCCCCCCCCCC---CCCCCceEEEEEeCCCCc--ceeeeccCCC-ccHHHHHHHHHHHhhhcC
Q psy1882          41 QPEMCFFCFDVLYCHLHSLEPPNPPSGI---SNDAFPLFVTWKIGKDQR--LRGCIGTFNA-INLHGGLREYAVTSAFKD  114 (233)
Q Consensus        41 ~~~m~~~cfd~L~~~L~~~~~p~~p~~~---~~~~~g~FVTl~~~~~g~--LRGCIGt~~~-~~L~~~i~~~Ai~AA~~D  114 (233)
                      ...||.+||++|.++|.+..++++|+.+   ++++.||||||++  +|+  |||||||+.| .||+++|++||++|||+|
T Consensus         9 ~~~l~~lAr~ai~~~l~~~~~~~~~~~~p~~l~~~~g~FVTl~~--~~~~~LRGCIGs~~p~~pL~~~v~~~A~~AA~~D   86 (200)
T TIGR00296         9 GSSAVRYARYAIESHLNGGKSSRLYPDLPIVFNEKRGVFITLKK--KGNKHLRGCIGTPEPVMPLIEAIEEAAISAATED   86 (200)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCccCChhhCCcccEEEEEEE--CCCcCCCcccccCCCcccHHHHHHHHHHHHHcCC
Confidence            4669999999999999865433222233   3789999999985  566  9999999999 799999999999999999


Q ss_pred             CCCCCCChhccccceEEEEeeecccCC------CCcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHH
Q psy1882         115 SRFNPITVDEFSKLHVSVSILRHFEDG------NDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDS  188 (233)
Q Consensus       115 pRF~Pl~~~EL~~L~ieVSvL~~~e~~------~~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~  188 (233)
                      |||+||+.+||++|.|+||||++++++      ++..+|+||+|||+|++    |. |+||||||||.||+||+++||++
T Consensus        87 pRF~Pl~~~EL~~l~ieVSvL~~~e~i~~~~~~~~~~~~~~G~hGlii~~----g~-~~gt~LPqVa~E~~wd~~~fl~~  161 (200)
T TIGR00296        87 PRFPPVQLEELDDIKVEVSILTPPETIFVGGPKDYPFDIEIGRHGLIVEF----GP-KRGLLLPQVAVEYGWDAEEFLAN  161 (200)
T ss_pred             CCCCCCChHHhCCcEEEEEeCCCCEEcccCCccccHHHcccccceEEEEE----CC-ccEEECCccHhhcCCCHHHHHHH
Confidence            999999999999999999999999998      35568999999999995    54 68999999999999999999999


Q ss_pred             HHHhcCCCCCCCcccCC-ceEEEEEEEEEEEee
Q psy1882         189 LLRKGGFKGPITPDIRC-NIKLTRYQSELVSVS  220 (233)
Q Consensus       189 l~~KaG~~~~~~~~~~~-~i~l~Ryqs~k~~~s  220 (233)
                      +|+|||+++   +.|++ +++++||++++|+..
T Consensus       162 l~~KAGl~~---d~w~~~~~~v~rf~~~~f~E~  191 (200)
T TIGR00296       162 LCMKAGLPP---DCFLTYGIEVYRFEGQIFEEF  191 (200)
T ss_pred             HHHhCCCCc---cccccCCcEEEEEEEEEEEec
Confidence            999999963   33443 699999999998753

Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.

>PRK00801 hypothetical protein; Provisional

Probab=100.00  E-value=8.1e-54  Score=371.84  Aligned_cols=168  Identities=23%  Similarity=0.332  Sum_probs=148.2

Q ss_pred             ChhHHhHHHHHHHHhhcCCCCCCC----CCCCCCCCCceEEEEEeCCCCcceeeeccCCC-ccHHHHHHHHHHHhhhcCC
Q psy1882          41 QPEMCFFCFDVLYCHLHSLEPPNP----PSGISNDAFPLFVTWKIGKDQRLRGCIGTFNA-INLHGGLREYAVTSAFKDS  115 (233)
Q Consensus        41 ~~~m~~~cfd~L~~~L~~~~~p~~----p~~~~~~~~g~FVTl~~~~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~Dp  115 (233)
                      -..++.+||++|.++|.+..++.+    |+.| +++.||||||++  +|+|||||||+.| +||+++|++||++|||+||
T Consensus         9 ~~~Ll~lAR~ai~~~l~~~~~~~~~~~~~~~l-~~~~g~FVTl~~--~g~LRGCIGs~~p~~pL~~~v~~~A~~AA~~Dp   85 (201)
T PRK00801          9 GEFAVRLARRAIEEYLRTGKVIEPPKDLPPVF-WEKRGVFVTLNK--HGVLRGCIGFPYPDSPLVEAIIDSAISAATRDP   85 (201)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCccCCHhH-cccccEEEEEEE--CCeeccccCCCCCcccHHHHHHHHHHHHHcCCC
Confidence            456999999999999986543322    2233 678999999984  8999999999888 6999999999999999999


Q ss_pred             CCCCCChhccccceEEEEeeecccCCCC-----cccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHHHH
Q psy1882         116 RFNPITVDEFSKLHVSVSILRHFEDGND-----YTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLL  190 (233)
Q Consensus       116 RF~Pl~~~EL~~L~ieVSvL~~~e~~~~-----~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~l~  190 (233)
                      ||+||+.+||++|.|+||||++++++.+     +.+|+||+|||+|++    |. |+||||||||.|||||+++||.++|
T Consensus        86 RF~Pl~~~EL~~l~ieVSvLs~~e~i~~~~~~l~~~~~~G~~Glii~~----g~-~~g~~LPqV~~e~~wd~~efl~~l~  160 (201)
T PRK00801         86 RFPPVKLEEMDEITVEVTVLTPPELIEGPPEELPEKIEVGRHGLIVKK----GI-YSGLLLPQVAPEWGFDSEEFLSHTC  160 (201)
T ss_pred             CCCCCChHHhCCcEEEEEEcCCCEEccCcchhhHHhccccceEEEEEe----CC-ccEEECCcchhhcCCCHHHHHHHHH
Confidence            9999999999999999999999999865     567999999999995    54 6899999999999999999999999


Q ss_pred             HhcCCCCCCCcccCCceEEEEEEEEEEEe
Q psy1882         191 RKGGFKGPITPDIRCNIKLTRYQSELVSV  219 (233)
Q Consensus       191 ~KaG~~~~~~~~~~~~i~l~Ryqs~k~~~  219 (233)
                      +|||++   ++.|.++++++||++++|+.
T Consensus       161 ~KAGl~---~d~w~~~~~v~rf~~~~f~E  186 (201)
T PRK00801        161 LKAGLP---PDCWLDDAEVYRFEGQIFKE  186 (201)
T ss_pred             HhcCCC---ccccccCcEEEEEEEEEEEc
Confidence            999996   34466689999999999975

>COG2078 AMMECR1 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9.3e-50  Score=345.24  Aligned_cols=174  Identities=25%  Similarity=0.398  Sum_probs=153.0

Q ss_pred             ChhHHhHHHHHHHHhhcCCCCCCCC--CCCCCCCCceEEEEEeC-CCCcceeeeccCCC-ccHHHHHHHHHHHhhhcCCC
Q psy1882          41 QPEMCFFCFDVLYCHLHSLEPPNPP--SGISNDAFPLFVTWKIG-KDQRLRGCIGTFNA-INLHGGLREYAVTSAFKDSR  116 (233)
Q Consensus        41 ~~~m~~~cfd~L~~~L~~~~~p~~p--~~~~~~~~g~FVTl~~~-~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~DpR  116 (233)
                      -..+|.|||.+|+++|++.+.++++  +...+++.|+||||++. .+++||||||++.| .+|+++|+++|+.||++|||
T Consensus        10 g~~~V~lAR~ai~~~L~~gk~~~~~~~~~~~~~k~gvFvTl~~~~~~~~LRGCIG~~~p~~~l~~ai~~~Ai~AA~~DPR   89 (203)
T COG2078          10 GHPLVRLAREAIENYLEGGKVIEPEPFPKLFQEKRGVFVTLEKYSPDGELRGCIGTPEPVKPLAEAIIKAAIEAALSDPR   89 (203)
T ss_pred             ChHHHHHHHHHHHHHhccCCcCCCcccchhhhhccceEEEEEEeCCCCceeeecccCcccCcHHHHHHHHHHHHHhcCCC
Confidence            3789999999999999876544433  25558899999999986 46899999999999 58999999999999999999


Q ss_pred             CCCCChhccccceEEEEeeecccCCCCc-----ccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHHHHH
Q psy1882         117 FNPITVDEFSKLHVSVSILRHFEDGNDY-----TDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLR  191 (233)
Q Consensus       117 F~Pl~~~EL~~L~ieVSvL~~~e~~~~~-----~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~l~~  191 (233)
                      |+||+.+||+++.||||||++||++.+.     .+|++|+|||+|.    +|. ++|+||||||+|++||.++||+++|.
T Consensus        90 F~pv~~~EL~~i~veV~iLt~pe~i~~~p~~~p~~ie~G~~Gliv~----~g~-~sgllLPqV~vE~~w~~eefL~~~c~  164 (203)
T COG2078          90 FPPVSLEELDDIVVEVTILTPPEEIDVPPEERPEDIEVGRHGLIVE----KGI-YSGLLLPQVPVEYRWDVEEFLEHTCE  164 (203)
T ss_pred             CCCCChhHhcceEEEEEEcCCCeecCCCchhChhheeecceEEEEe----cCC-cceeecCccccccCCCHHHHHHHHHH
Confidence            9999999999999999999999987654     6799999999998    565 68999999999999999999999999


Q ss_pred             hcCCCCCCCcccCCceEEEEEEEEEEEeeH
Q psy1882         192 KGGFKGPITPDIRCNIKLTRYQSELVSVSY  221 (233)
Q Consensus       192 KaG~~~~~~~~~~~~i~l~Ryqs~k~~~sy  221 (233)
                      |||++++++.  .++++++||+++.|..+.
T Consensus       165 KAGlp~~~w~--~~~~~iy~F~~~If~E~~  192 (203)
T COG2078         165 KAGLPGDCWL--DEDVKIYRFEAQIFKEKE  192 (203)
T ss_pred             HcCCCccccc--ccCceEEEEEEEEEEecC
Confidence            9999655443  348999999999998653

>PRK03881 hypothetical protein; Provisional

Probab=100.00  E-value=5.7e-44  Score=341.52  Aligned_cols=162  Identities=26%  Similarity=0.419  Sum_probs=142.6

Q ss_pred             ChhHHhHHHHHHHHhhcCCCCCC----CCCCCCCCCCceEEEEEeCCCCcceeeeccCCCc--cHHHHHHHHHHHhhhcC
Q psy1882          41 QPEMCFFCFDVLYCHLHSLEPPN----PPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAI--NLHGGLREYAVTSAFKD  114 (233)
Q Consensus        41 ~~~m~~~cfd~L~~~L~~~~~p~----~p~~~~~~~~g~FVTl~~~~~g~LRGCIGt~~~~--~L~~~i~~~Ai~AA~~D  114 (233)
                      .+.++.+||++|+++|.+..+++    .|+.+++++.||||||++  +|+|||||||+.|.  ||+++|++||++|||+|
T Consensus       299 ~~~l~~lAr~~i~~~l~~~~~~~~~~~~~~~~~~~~~g~FVTl~~--~g~LRGCIG~~~p~~~~L~~~v~~~a~~AA~~D  376 (467)
T PRK03881        299 EDPYVRLARESLESYVKTGKPLPVPDYLPEEMLNRRAGVFVSLKK--DGELRGCIGTIFPTRENIAEEIIRNAISAGTED  376 (467)
T ss_pred             hhHHHHHHHHHHHHHhCcCCCCCCCccCChHHhCCcccEEEEEEE--CCeeeeeeeecCCCcchHHHHHHHHHHHHhcCC
Confidence            67799999999999998643222    223455889999999984  79999999999995  79999999999999999


Q ss_pred             CCCCCCChhccccceEEEEeeecccCCCCcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCH-HHHHHHHHHhc
Q psy1882         115 SRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQ-IQTIDSLLRKG  193 (233)
Q Consensus       115 pRF~Pl~~~EL~~L~ieVSvL~~~e~~~~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~-~~~l~~l~~Ka  193 (233)
                      |||+||+++||++|.||||||+++|++.++.+|+||+|||+|++    |. |+|||||||   ++|+. ++||+++|+||
T Consensus       377 pRF~pl~~~El~~l~i~VsvL~~~~~~~~~~~~~~g~~Gli~~~----~~-~~g~~LP~v---~~~~~~~~fl~~~~~Ka  448 (467)
T PRK03881        377 PRFPPVEEDELDDLVYSVDVLTEPEPVSSLDELDPKRYGVIVRS----GR-RRGLLLPDL---EGVDTVEEQLSIALRKA  448 (467)
T ss_pred             CCCCCCChHHhCCeEEEEEEcCCCeECCCHHHcCCccceEEEEE----CC-ccEEECCCC---CCCCCHHHHHHHHHHhc
Confidence            99999999999999999999999999998899999999999995    54 689999999   56888 89999999999


Q ss_pred             CCCCCCCcccCCceEEEEEEEEEEE
Q psy1882         194 GFKGPITPDIRCNIKLTRYQSELVS  218 (233)
Q Consensus       194 G~~~~~~~~~~~~i~l~Ryqs~k~~  218 (233)
                      |++    ++  ..++++||++++|+
T Consensus       449 Gl~----~~--~~~~~~~f~~~~~~  467 (467)
T PRK03881        449 GID----PD--EDVEIERFEVVRHK  467 (467)
T ss_pred             CCC----CC--CCeEEEEEEEEEeC
Confidence            995    33  24999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
1wsc_A	230	Crystal Structure Of St0229, Function Unknown Prote		4e-09
1zq7_A	207	X-Ray Crystal Structure Of Protein Q8pzk8 From Meth		3e-05
1vaj_A	214	Crystal Structure Of Uncharacterized Protein Ph0010		3e-05

>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From Sulfolobus Tokodaii Length = 230

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Query: 55  HLHSLEPPNPPSGISNDAFPLFVTWKI--GKDQRLRGCIGTFNAIN-LHGGLREYAVTSA 111
           +L SL  P     I N     FVT +   G    LRGCIG   A+  L   + + A+ +A
Sbjct: 42  YLSSLNDP-----ILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAA 96
Query: 112 FKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDW------KIGVHGIRIEFHNERGNK 165
           F D RF P++  EF  + + V++L   ++ +    W      K+G  G+ +E+    G  
Sbjct: 97  FSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY----GIL 152
Query: 166 RTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCN--IKLTRYQ 213
            +   LP+V  E  WD+    ++ L +   K  + PD   N  +K+ ++Q
Sbjct: 153 YSGLLLPQVPXEYCWDE----ETFLAETCIKAGLEPDCWLNNKVKIKKFQ 198

>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar9. Length = 207

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 75  LFVTWKIGKDQRLRGCIG-TFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVS 133
           +FVT   G    LRGCIG  +    L   + + A+++A +D RF  +  DE   + V V+
Sbjct: 47  VFVTLTEGG--LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEXKNILVEVT 104
Query: 134 ILRHFEDGN----DYTD-WKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDS 188
           IL   E  N    +  D  +IG HG+ ++    +G       LP+VAPE   D I  +  
Sbjct: 105 ILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQG-----LLLPQVAPENDXDSIDFLSH 159
Query: 189 LLRKGGF 195
              K G 
Sbjct: 160 TCXKAGL 166

>pdb|1VAJ|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0010 From Pyrococcus Horikoshii Length = 214

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 24/178 (13%)
Query: 57  HSLEPPN--PPSGISNDAFPLFVT---WKIGKDQRLRGCIGTFNAI-NLHGGLREYAVTS 110
             +EPP   PP         +FVT   + +     LRGCIG    I  L     + A+ S
Sbjct: 29  KEIEPPKDTPPELWEKXG--VFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYS 86
Query: 111 AFKDSRFNPITVDEFSKLHVSVSILRHFE-----DGNDYTDWKIGVHGIRIEFHNERGNK 165
           A  D RF P+ ++E   L V VS+L   E             K+G  G+ +E        
Sbjct: 87  AVDDPRFPPVKLEEXDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE-----KGI 141
Query: 166 RTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPD--IRCNIKLTRYQSELVSVSY 221
            +   LP+V  E GWD+    +  L +  +K  + PD  +  + K+ ++ +E+    Y
Sbjct: 142 YSGLLLPQVPVEWGWDE----EEFLAETCWKAGLPPDCWLDEDTKVYKFTAEIFEEEY 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1vaj_A	214	Hypothetical protein PH0010; alpha + beta fold, st	6e-47
1zq7_A	207	Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8	6e-46
1wsc_A	230	Hypothetical protein ST0229; structural genomics,	9e-46

>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1 Length = 214

 Score =  153 bits (389), Expect = 6e-47
 Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 19/185 (10%)

Query: 49  FDVLYCHLHSLEPPNPPSGIS---NDAFPLFVTWK---IGKDQRLRGCIGTFNAI-NLHG 101
              +  +L + +   PP        +   +FVT     +     LRGCIG    I  L  
Sbjct: 18  RRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVE 77

Query: 102 GLREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFE-----DGNDYTDWKIGVHGIRI 156
              + A+ SA  D RF P+ ++E   L V VS+L   E             K+G  G+ +
Sbjct: 78  ATIKAAIYSAVDDPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIV 137

Query: 157 EFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSEL 216
                     +   LP+V  E GWD+ + +     K G       D   + K+ ++ +E+
Sbjct: 138 -----EKGIYSGLLLPQVPVEWGWDEEEFLAETCWKAGLPPDCWLDE--DTKVYKFTAEI 190

Query: 217 VSVSY 221
               Y
Sbjct: 191 FEEEY 195

>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1 Length = 207

 Score =  150 bits (381), Expect = 6e-46
 Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 29/200 (14%)

Query: 50  DVLYCHLHSLEPPNPPSGIS------NDAFPLFVTWKIGKDQRLRGCIGTFNAI-NLHGG 102
             +   L   + P P +          +   +FVT    +   LRGCIG       L   
Sbjct: 16  KTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLT--EGGLLRGCIGHPYPDSTLKEA 73

Query: 103 LREYAVTSAFKDSRFNPITVDEFSKLHVSVSILRHFE-----DGNDYTDWKIGVHGIRIE 157
           + + A+++A +D RF  +  DE   + V V+IL   E             +IG HG+ ++
Sbjct: 74  ILDSAISAATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK 133

Query: 158 FHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELV 217
                        LP+VAPE   D I  +     K G             ++  ++ ++ 
Sbjct: 134 Q-----GYCQGLLLPQVAPENDMDSIDFLSHTCMKAGLSPDAWVK---GAEVYCFEGQIF 185

Query: 218 S-------VSYQDYLNHWKN 230
                   V  + +L H  +
Sbjct: 186 KEKEPDGEVIEEKFLEHHHH 205

>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1 Length = 230

 Score =  151 bits (382), Expect = 9e-46
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 15/174 (8%)

Query: 60  EPPNPPSGISNDAFPLFVTWKI--GKDQRLRGCIGTFNAI-NLHGGLREYAVTSAFKDSR 116
              +    I N     FVT +   G    LRGCIG   A+  L   + + A+ +AF D R
Sbjct: 42  YLSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPR 101

Query: 117 FNPITVDEFSKLHVSVSILRHFEDGNDYTDW------KIGVHGIRIEFHNERGNKRTATY 170
           F P++  EF  + + V++L   ++ +    W      K+G  G+ +E+    G   +   
Sbjct: 102 FPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY----GILYSGLL 157

Query: 171 LPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSELVSVSYQDY 224
           LP+V  E  WD+   +     K G +     +    +K+ ++Q  +        
Sbjct: 158 LPQVPMEYCWDEETFLAETCIKAGLEPDCWLNN--KVKIKKFQGIIFREEKPKS 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
1zq7_A	207	Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8	100.0
1vaj_A	214	Hypothetical protein PH0010; alpha + beta fold, st	100.0
1wsc_A	230	Hypothetical protein ST0229; structural genomics,	100.0

>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1

Probab=100.00  E-value=2.3e-56  Score=388.04  Aligned_cols=169  Identities=24%  Similarity=0.336  Sum_probs=150.2

Q ss_pred             ChhHHhHHHHHHHHhhcCCCCCCC------CCCCCCCCCceEEEEEeCCCCcceeeeccCCC-ccHHHHHHHHHHHhhhc
Q psy1882          41 QPEMCFFCFDVLYCHLHSLEPPNP------PSGISNDAFPLFVTWKIGKDQRLRGCIGTFNA-INLHGGLREYAVTSAFK  113 (233)
Q Consensus        41 ~~~m~~~cfd~L~~~L~~~~~p~~------p~~~~~~~~g~FVTl~~~~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~  113 (233)
                      .+.|+.+||++|+++|++...+.+      .+..+++++||||||++  +|+||||||||.| +||+++|++||++|||+
T Consensus         7 ~~~lv~lAR~aI~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~--~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~   84 (207)
T 1zq7_A            7 GRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE--GGLLRGCIGHPYPDSTLKEAILDSAISAATR   84 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE--TTEEEEEEEECSCCSBHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCccccccCCChhhcCcccEEEEEEE--CCeEEEeeccCCccccHHHHHHHHHHHHccC
Confidence            467999999999999975433222      12345789999999994  8999999999999 79999999999999999


Q ss_pred             CCCCCCCChhccccceEEEEeeecccCC-----CCcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHH
Q psy1882         114 DSRFNPITVDEFSKLHVSVSILRHFEDG-----NDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDS  188 (233)
Q Consensus       114 DpRF~Pl~~~EL~~L~ieVSvL~~~e~~-----~~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~  188 (233)
                      ||||+||+.+||++|.|+||||++||++     .++.||+||+|||+|++    |. |+||||||||+|||||+++||++
T Consensus        85 DpRF~Pl~~~EL~~l~ieVsvLs~~e~~~~~~~~~~~~~~~G~hGlii~~----g~-~~g~lLPqVa~E~gWd~eefl~~  159 (207)
T 1zq7_A           85 DPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ----GY-CQGLLLPQVAPENDMDSIDFLSH  159 (207)
T ss_dssp             CTTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEEE----TT-EEEEECTTHHHHTTCCHHHHHHH
T ss_pred             CCCCCCCCHHHHcCcEEEEEEccCCEEcccccccCHHHcCCCCceEEEEE----CC-eeeEECCcchhhcCCCHHHHHHH
Confidence            9999999999999999999999999999     77789999999999995    54 68999999999999999999999


Q ss_pred             HHHhcCCCCCCCcccCCceEEEEEEEEEEEe
Q psy1882         189 LLRKGGFKGPITPDIRCNIKLTRYQSELVSV  219 (233)
Q Consensus       189 l~~KaG~~~~~~~~~~~~i~l~Ryqs~k~~~  219 (233)
                      +|+||||++   +.|+++++|+|||+++|+.
T Consensus       160 l~~KAG~~~---~~w~~~~~v~rf~~~~~~E  187 (207)
T 1zq7_A          160 TCMKAGLSP---DAWVKGAEVYCFEGQIFKE  187 (207)
T ss_dssp             HHHHTTBCG---GGGTTTCEEEEECEEEEEE
T ss_pred             HHHhcCCCh---hhccCceEEEEEEEEEEEE
Confidence            999999963   3465689999999999985

>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1

Probab=100.00  E-value=7.5e-56  Score=386.47  Aligned_cols=172  Identities=25%  Similarity=0.323  Sum_probs=151.0

Q ss_pred             ChhHHhHHHHHHHHhhcCCCCCCCC---CCCCCCCCceEEEEEeC---CCCcceeeeccCCC-ccHHHHHHHHHHHhhhc
Q psy1882          41 QPEMCFFCFDVLYCHLHSLEPPNPP---SGISNDAFPLFVTWKIG---KDQRLRGCIGTFNA-INLHGGLREYAVTSAFK  113 (233)
Q Consensus        41 ~~~m~~~cfd~L~~~L~~~~~p~~p---~~~~~~~~g~FVTl~~~---~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~  113 (233)
                      .+.|+.+||++|+++|++...+.+|   +..+++++||||||++.   ++|+||||||||.| +||+++|++||++|||+
T Consensus        10 g~~lv~lAR~aI~~~L~~~~~~~~p~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~   89 (214)
T 1vaj_A           10 GEFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVD   89 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCcccChhhcCcccEEEEEEECcCCCCCceeeeecCCCccccHHHHHHHHHHHhccC
Confidence            5789999999999999754432112   13347899999999964   57899999999999 79999999999999999


Q ss_pred             CCCCCCCChhccccceEEEEeeecccCC-----CCcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHH
Q psy1882         114 DSRFNPITVDEFSKLHVSVSILRHFEDG-----NDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDS  188 (233)
Q Consensus       114 DpRF~Pl~~~EL~~L~ieVSvL~~~e~~-----~~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~  188 (233)
                      ||||+||+.+||++|.|+||||++||++     +++.||+||+|||+|++    |. |+||||||||+||+|++++||++
T Consensus        90 DpRF~Pl~~~EL~~l~ieVsvL~~~e~i~~~~~~~~~~~~~G~hGlii~~----g~-~~g~~LPqV~~E~~W~~~e~l~~  164 (214)
T 1vaj_A           90 DPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK----GI-YSGLLLPQVPVEWGWDEEEFLAE  164 (214)
T ss_dssp             CTTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE----TT-EEEEECTHHHHHHTCCHHHHHHH
T ss_pred             CCCCCCCCHHHhcCcEEEEEEcCCcEEcccccccCHHHcCCCCceEEEEe----CC-eeEEECCCchhhcCCCHHHHHHH
Confidence            9999999999999999999999999999     56788999999999995    54 68999999999999999999999


Q ss_pred             HHHhcCCCCCCCccc-CCceEEEEEEEEEEEee
Q psy1882         189 LLRKGGFKGPITPDI-RCNIKLTRYQSELVSVS  220 (233)
Q Consensus       189 l~~KaG~~~~~~~~~-~~~i~l~Ryqs~k~~~s  220 (233)
                      +|+|||+++   +.| .++++|+|||+++|+..
T Consensus       165 l~~KAG~~~---d~w~~~~~~l~rf~~~~f~E~  194 (214)
T 1vaj_A          165 TCWKAGLPP---DCWLDEDTKVYKFTAEIFEEE  194 (214)
T ss_dssp             HHHHTTSCT---TGGGCTTSEEEEECEEEEEES
T ss_pred             HHHHcCCCc---ccccCCCeEEEEEEEEEEEEe
Confidence            999999963   223 36899999999999974

>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1

Probab=100.00  E-value=5.9e-55  Score=384.42  Aligned_cols=174  Identities=24%  Similarity=0.344  Sum_probs=151.9

Q ss_pred             cChhHHhHHHHHHHHhhcCCCC--C-C----CCCCCCCCCCceEEEEEeC--CCCcceeeeccCCC-ccHHHHHHHHHHH
Q psy1882          40 AQPEMCFFCFDVLYCHLHSLEP--P-N----PPSGISNDAFPLFVTWKIG--KDQRLRGCIGTFNA-INLHGGLREYAVT  109 (233)
Q Consensus        40 ~~~~m~~~cfd~L~~~L~~~~~--p-~----~p~~~~~~~~g~FVTl~~~--~~g~LRGCIGt~~~-~~L~~~i~~~Ai~  109 (233)
                      ..+.|+.+||++|+++|++...  | .    .| .++++++||||||++.  ++|+||||||||.| +||+++|++||++
T Consensus        16 e~~~lv~lAR~aI~~~L~~~~~~~p~~~~~~~~-~~l~~~~g~FVTl~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~   94 (230)
T 1wsc_A           16 LGKVLIKIARDSIANKLGILKINLEDYLSSLND-PILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIA   94 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCSCHHHHHHHCCC-GGGGSEEEEEEEEEEECSSCEEEEEEEEEEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCCCccccccCc-hhhcCcccEEEEEEECCCCCCceeeeecCCCccccHHHHHHHHHHH
Confidence            3678999999999999976543  2 1    23 3458899999999953  47899999999999 7999999999999


Q ss_pred             hhhcCCCCCCCChhccccceEEEEeeecccCCC------CcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHH
Q psy1882         110 SAFKDSRFNPITVDEFSKLHVSVSILRHFEDGN------DYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQI  183 (233)
Q Consensus       110 AA~~DpRF~Pl~~~EL~~L~ieVSvL~~~e~~~------~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~  183 (233)
                      |||+||||+||+.+||++|.|+||||++||++.      ++.||+||+|||+|++    |..|+||||||||.||||+++
T Consensus        95 AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~~~~~~~~~G~hGlii~~----g~~~~g~lLPqV~~e~~w~~e  170 (230)
T 1wsc_A           95 AAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY----GILYSGLLLPQVPMEYCWDEE  170 (230)
T ss_dssp             HHHTCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE----TTTEEEEECTHHHHHTTCCHH
T ss_pred             hccCCCCCCCCCHHHHcCcEEEEEEcCCcEEcccCCcccCHHHcCCCCCeEEEee----CCCceEEECCCcccccCCCHH
Confidence            999999999999999999999999999999984      5678999999999995    634789999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCccc-CCceEEEEEEEEEEEeeH
Q psy1882         184 QTIDSLLRKGGFKGPITPDI-RCNIKLTRYQSELVSVSY  221 (233)
Q Consensus       184 ~~l~~l~~KaG~~~~~~~~~-~~~i~l~Ryqs~k~~~sy  221 (233)
                      +||+++|+||||+++   .| ..+++|+|||+++|+..+
T Consensus       171 efl~~l~~KAGl~~~---~w~~~~~~v~rf~~~~f~E~~  206 (230)
T 1wsc_A          171 TFLAETCIKAGLEPD---CWLNNKVKIKKFQGIIFREEK  206 (230)
T ss_dssp             HHHHHHHHHHTSCTT---GGGCTTSEEEEECEEEEEESS
T ss_pred             HHHHHHHHhCCCCCc---ccccCceEEEEEEEEEEEecC
Confidence            999999999999632   33 247999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1vaja1	203	d.309.1.1 (A:3-205) Hypothetical protein PH0010 {A	2e-49
d1wsca1	225	d.309.1.1 (A:3-227) Hypothetical protein ST0229 {S	3e-49
d1zq7a1	199	d.309.1.1 (A:1-199) Hypothetical protein MM0484 {M	3e-44

>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 203

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein PH0010
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  158 bits (402), Expect = 2e-49
 Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 59  LEPPNPPSGISNDAFPLFVTWK---IGKDQRLRGCIGTFNAI-NLHGGLREYAVTSAFKD 114
           +EPP        +   +FVT     +     LRGCIG    I  L     + A+ SA  D
Sbjct: 29  IEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDD 88

Query: 115 SRFNPITVDEFSKLHVSVSILRHFE-----DGNDYTDWKIGVHGIRIEFHNERGNKRTAT 169
            RF P+ ++E   L V VS+L   E             K+G  G+ +E         +  
Sbjct: 89  PRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK-----GIYSGL 143

Query: 170 YLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSE 215
            LP+V  E GWD+ + +     K G       D   + K+ ++ +E
Sbjct: 144 LLPQVPVEWGWDEEEFLAETCWKAGLPPDCWLDE--DTKVYKFTAE 187

>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]} Length = 225

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein ST0229
species: Sulfolobus tokodaii [TaxId: 111955]

 Score =  158 bits (402), Expect = 3e-49
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 15/164 (9%)

Query: 61  PPNPPSGISNDAFPLFVTWKI--GKDQRLRGCIGTFNAI-NLHGGLREYAVTSAFKDSRF 117
             +    I N     FVT +   G    LRGCIG   A+  L   + + A+ +AF D RF
Sbjct: 41  LSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRF 100

Query: 118 NPITVDEFSKLHVSVSILRHFEDGNDYTDW------KIGVHGIRIEFHNERGNKRTATYL 171
            P++  EF  + + V++L   ++ +    W      K+G  G+ +E+    G   +   L
Sbjct: 101 PPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY----GILYSGLLL 156

Query: 172 PEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSE 215
           P+V  E  WD+   +     K G +     +    +K+ ++Q  
Sbjct: 157 PQVPMEYCWDEETFLAETCIKAGLEPDCWLNN--KVKIKKFQGI 198

>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]} Length = 199

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein MM0484
species: Methanosarcina mazei [TaxId: 2209]

 Score =  145 bits (367), Expect = 3e-44
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 18/162 (11%)

Query: 61  PPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAI-NLHGGLREYAVTSAFKDSRFNP 119
                S +  +   +FVT    +   LRGCIG       L   + + A+++A +D RF  
Sbjct: 33  SGVELSPVFEEYRGVFVTLT--EGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPT 90

Query: 120 ITVDEFSKLHVSVSILRHFE-----DGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEV 174
           +  DE   + V V+IL   E             +IG HG+ ++             LP+V
Sbjct: 91  VEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ-----GYCQGLLLPQV 145

Query: 175 APEQGWDQIQTIDSLLRKGGFKGPITPDI-RCNIKLTRYQSE 215
           APE   D I  +     K G    ++PD      ++  ++ +
Sbjct: 146 APENDMDSIDFLSHTCMKAG----LSPDAWVKGAEVYCFEGQ 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1vaja1	203	Hypothetical protein PH0010 {Archaeon Pyrococcus h	100.0
d1zq7a1	199	Hypothetical protein MM0484 {Methanosarcina mazei	100.0
d1wsca1	225	Hypothetical protein ST0229 {Sulfolobus tokodaii [	100.0

>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein PH0010
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.4e-53  Score=366.04  Aligned_cols=173  Identities=25%  Similarity=0.342  Sum_probs=148.0

Q ss_pred             hhHHhHHHHHHHHhhcCCCCCCCCC---CCCCCCCceEEEEEeC---CCCcceeeeccCCC-ccHHHHHHHHHHHhhhcC
Q psy1882          42 PEMCFFCFDVLYCHLHSLEPPNPPS---GISNDAFPLFVTWKIG---KDQRLRGCIGTFNA-INLHGGLREYAVTSAFKD  114 (233)
Q Consensus        42 ~~m~~~cfd~L~~~L~~~~~p~~p~---~~~~~~~g~FVTl~~~---~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~D  114 (233)
                      .-++.+|+++|.++|.+..++++|.   ..++.+.||||||++.   .+|+||||||++.| +||+++|++||++|||+|
T Consensus         9 ~~Ll~lAR~ai~~~l~~g~~~~~~~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIG~~~p~~pL~~~v~~~A~~AA~~D   88 (203)
T d1vaja1           9 EFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDD   88 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHccCCCCCCCccCCHHHcCceEEEEEEEEcccCCCCceeeeecccCCchhHHHHHHHHHHHHHhCC
Confidence            4578999999999997543322221   2237799999999963   26899999999999 699999999999999999


Q ss_pred             CCCCCCChhccccceEEEEeeecccCCCC-----cccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHHH
Q psy1882         115 SRFNPITVDEFSKLHVSVSILRHFEDGND-----YTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSL  189 (233)
Q Consensus       115 pRF~Pl~~~EL~~L~ieVSvL~~~e~~~~-----~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~l  189 (233)
                      |||+||+.+||++|.|+||||++++++.+     +.+|++|+|||+|++    |. |+||||||||.||+|++++||+++
T Consensus        89 pRF~Pl~~~El~~l~ieVsvLs~~e~i~~~~~~~~~~~~~G~~Glii~~----g~-~~g~fLP~Va~e~~w~~~~fl~~l  163 (203)
T d1vaja1          89 PRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK----GI-YSGLLLPQVPVEWGWDEEEFLAET  163 (203)
T ss_dssp             TTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE----TT-EEEEECTHHHHHHTCCHHHHHHHH
T ss_pred             CCCCCCCHHHHcCcEEEEEECCCCEECCCCchhCHHHccCcceEEEEEe----CC-cceEECCCcccccCCCHHHHHHHH
Confidence            99999999999999999999999998863     456999999999984    65 689999999999999999999999


Q ss_pred             HHhcCCCCCCCccc-CCceEEEEEEEEEEEeeHH
Q psy1882         190 LRKGGFKGPITPDI-RCNIKLTRYQSELVSVSYQ  222 (233)
Q Consensus       190 ~~KaG~~~~~~~~~-~~~i~l~Ryqs~k~~~sy~  222 (233)
                      |+|||++.+.   | ..+++++||++++|+..+.
T Consensus       164 ~~KAGl~~~~---w~~~~~~~~rf~~~~f~E~~p  194 (203)
T d1vaja1         164 CWKAGLPPDC---WLDEDTKVYKFTAEIFEEEYP  194 (203)
T ss_dssp             HHHTTSCTTG---GGCTTSEEEEECEEEEEESST
T ss_pred             HHHcCCCCCc---CCCCCeEEEEEEEEEEEecCC
Confidence            9999995322   3 2479999999999998653

>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein MM0484
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=4.4e-53  Score=363.56  Aligned_cols=169  Identities=25%  Similarity=0.366  Sum_probs=147.4

Q ss_pred             hhHHhHHHHHHHHhhcCCCCCCCC------CCCCCCCCceEEEEEeCCCCcceeeeccCCC-ccHHHHHHHHHHHhhhcC
Q psy1882          42 PEMCFFCFDVLYCHLHSLEPPNPP------SGISNDAFPLFVTWKIGKDQRLRGCIGTFNA-INLHGGLREYAVTSAFKD  114 (233)
Q Consensus        42 ~~m~~~cfd~L~~~L~~~~~p~~p------~~~~~~~~g~FVTl~~~~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~D  114 (233)
                      ..++.+|+++|.++|++..+|.++      +..++++.||||||++  +|+||||||++.| +||+++|++||++|||+|
T Consensus         8 ~~Ll~lAR~ai~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTL~~--~g~LRGCIGs~~p~~pL~~~v~~~A~~AA~~D   85 (199)
T d1zq7a1           8 RAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE--GGLLRGCIGHPYPDSTLKEAILDSAISAATRD   85 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE--TTEEEEEEEECSCCSBHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHccCCCCCCCcccccCChhHccceeEEEEEEE--CCEEeEeecccCcchhHHHHHHHHHHHHHhCC
Confidence            568999999999999865433221      1234779999999995  8999999999999 699999999999999999


Q ss_pred             CCCCCCChhccccceEEEEeeecccCCCC-----cccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHHH
Q psy1882         115 SRFNPITVDEFSKLHVSVSILRHFEDGND-----YTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSL  189 (233)
Q Consensus       115 pRF~Pl~~~EL~~L~ieVSvL~~~e~~~~-----~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~l  189 (233)
                      |||+||+.+||++|.|+||||++++++..     +.+|+||+|||+|+    +|. ++||||||||+||+||.++||+++
T Consensus        86 pRF~pl~~~El~~l~ieVsvLs~~e~i~~~~~el~~~l~~g~~Glii~----~g~-~~g~fLP~V~~e~~~d~~efL~~l  160 (199)
T d1zq7a1          86 PRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK----QGY-CQGLLLPQVAPENDMDSIDFLSHT  160 (199)
T ss_dssp             TTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEE----ETT-EEEEECTTHHHHTTCCHHHHHHHH
T ss_pred             CCCCCCCHHHhcCCEEEEEECCCcEEccCChhhhHHHhccccceEEEE----eCC-cceEECCcchhhcCCCHHHHHHHH
Confidence            99999999999999999999999998853     34699999999998    465 689999999999999999999999


Q ss_pred             HHhcCCCCCCCcccCCceEEEEEEEEEEEee
Q psy1882         190 LRKGGFKGPITPDIRCNIKLTRYQSELVSVS  220 (233)
Q Consensus       190 ~~KaG~~~~~~~~~~~~i~l~Ryqs~k~~~s  220 (233)
                      |+|||++   .+.|+++++++||++++|+..
T Consensus       161 ~~KAGlp---~d~w~~~~~~~rf~~~~f~E~  188 (199)
T d1zq7a1         161 CMKAGLS---PDAWVKGAEVYCFEGQIFKEK  188 (199)
T ss_dssp             HHHTTBC---GGGGTTTCEEEEECEEEEEES
T ss_pred             HHHcCCC---cccccCCcEEEEEEEEEEEEc
Confidence            9999995   334667899999999999753

>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein ST0229
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=3.9e-51  Score=356.93  Aligned_cols=171  Identities=25%  Similarity=0.360  Sum_probs=147.4

Q ss_pred             hhHHhHHHHHHHHhhcCCCCCC------CCCCCCCCCCceEEEEEeC--CCCcceeeeccCCC-ccHHHHHHHHHHHhhh
Q psy1882          42 PEMCFFCFDVLYCHLHSLEPPN------PPSGISNDAFPLFVTWKIG--KDQRLRGCIGTFNA-INLHGGLREYAVTSAF  112 (233)
Q Consensus        42 ~~m~~~cfd~L~~~L~~~~~p~------~p~~~~~~~~g~FVTl~~~--~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~  112 (233)
                      ..++.+|+++|.++|.+...+.      .+...++++.||||||++.  ++|+|||||||+.| .||+++|++||++|||
T Consensus        16 ~~Ll~lAR~aI~~~l~~~~~~~~~~~~~~~~~~L~~~~g~FVTl~~~~~~~g~LRGCIGt~~~~~pL~~~v~~~A~~AA~   95 (225)
T d1wsca1          16 KVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAF   95 (225)
T ss_dssp             HHHHHHHHHHHHHHHTCSCSCHHHHHHHCCCGGGGSEEEEEEEEEEECSSCEEEEEEEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCccccccccCchhhcCceeEEEEEEEccCCCCceeEEeccCCcchhHHHHHHHHHHHHHh
Confidence            4579999999999998654321      1234457899999999962  57899999999999 5999999999999999


Q ss_pred             cCCCCCCCChhccccceEEEEeeecccCCCCcc------cccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHH
Q psy1882         113 KDSRFNPITVDEFSKLHVSVSILRHFEDGNDYT------DWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTI  186 (233)
Q Consensus       113 ~DpRF~Pl~~~EL~~L~ieVSvL~~~e~~~~~~------d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l  186 (233)
                      +||||+||+.+||++|.|+||||++++++....      +++||+|||+|++    |..|+||||||||.||+|++++||
T Consensus        96 ~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~el~~~l~~G~hGlii~~----g~~~~g~fLPqVa~e~~wd~e~fL  171 (225)
T d1wsca1          96 SDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY----GILYSGLLLPQVPMEYCWDEETFL  171 (225)
T ss_dssp             TCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE----TTTEEEEECTHHHHHTTCCHHHHH
T ss_pred             CCCCcCCCCHHHHhCeEEEEEECCCCEECCCCChHHhHHhcCCCcceEEEEE----CCcceEEECCCcccccCCCHHHHH
Confidence            999999999999999999999999999987643      4579999999995    544689999999999999999999


Q ss_pred             HHHHHhcCCCCCCCccc-CCceEEEEEEEEEEEe
Q psy1882         187 DSLLRKGGFKGPITPDI-RCNIKLTRYQSELVSV  219 (233)
Q Consensus       187 ~~l~~KaG~~~~~~~~~-~~~i~l~Ryqs~k~~~  219 (233)
                      +++|+|||++.+.   | ..+++++||++++|+.
T Consensus       172 ~~l~~KAGl~~d~---W~~~~~~v~rf~~~~F~E  202 (225)
T d1wsca1         172 AETCIKAGLEPDC---WLNNKVKIKKFQGIIFRE  202 (225)
T ss_dssp             HHHHHHHTSCTTG---GGCTTSEEEEECEEEEEE
T ss_pred             HHHHHhcCCCCCc---cCCCCeEEEEEEEEEEEE
Confidence            9999999995322   3 2479999999999986