Diaphorina citri psyllid: psy1896


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
MRIATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA
ccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
***ATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRK*********************KN*******
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRIATGASMVVNFLNDLYTLFDRIIKGYDVYKVETIGDAYMVNCLAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALEEPKRSPASNSYMKNSNREFYA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable syndecan Cell surface proteoglycan that bears heparan sulfate.confidentP50605
Syndecan Cell surface proteoglycan that bears heparan sulfate. Required for axonal and myotube guidance, is a necessary component of slit/robo signaling and is required in the slit target cells.confidentP49415
Syndecan-3 Cell surface proteoglycan that may bear both heparan sulfate and chondroitin sulfate. The multiple functional domains provide potential sites for mediating the adhesive cell-matrix interactions and cytoskeletal reorganization involved in limb chondrogenesis. Interaction with other matrix ligands as well as phosphorylation and shedding of the ectodomain might be involved in cell shape changes that occur during chondrogenesis. Furthermore, shedding of the ectodomain might break the adhesive interactions that promoted condensation, thus facilitating the deposition of cartilage matrix molecules.confidentP26261

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0045202 [CC]synapseconfidentGO:0005575
GO:0097009 [BP]energy homeostasisprobableGO:0032501, GO:0048871, GO:0044707, GO:0042592, GO:0008150, GO:0065007, GO:0065008, GO:0044699
GO:0045887 [BP]positive regulation of synaptic growth at neuromuscular junctionprobableGO:0048639, GO:0048638, GO:0019226, GO:0045927, GO:0035637, GO:0050803, GO:0008582, GO:0050807, GO:0048634, GO:0051128, GO:0032501, GO:0023052, GO:0051147, GO:0050789, GO:0044699, GO:0051962, GO:0040008, GO:0060284, GO:0065007, GO:0048518, GO:0048641, GO:0065008, GO:0051130, GO:0016202, GO:0009987, GO:0050793, GO:0050877, GO:0048742, GO:1901861, GO:0050794, GO:0051153, GO:0045595, GO:0008150, GO:0051239, GO:0007268, GO:0007267, GO:0007154, GO:0003008, GO:0044700, GO:0044707, GO:0051094, GO:0051963, GO:0044087, GO:0051960, GO:2000026, GO:0051965, GO:0044763, GO:0044089, GO:0048522
GO:0050908 [BP]detection of light stimulus involved in visual perceptionprobableGO:0009582, GO:0009581, GO:0050962, GO:0009583, GO:0009584, GO:0051606, GO:0009605, GO:0009628, GO:0050877, GO:0050896, GO:0007601, GO:0007600, GO:0050953, GO:0008150, GO:0032501, GO:0050906, GO:0009314, GO:0009416, GO:0044707, GO:0044699, GO:0003008
GO:0044246 [BP]regulation of multicellular organismal metabolic processprobableGO:0008150, GO:0065007, GO:0051239, GO:0019222, GO:0050789
GO:0008045 [BP]motor neuron axon guidanceprobableGO:0032502, GO:0044707, GO:0030030, GO:0030154, GO:0048468, GO:0031175, GO:0007411, GO:0009653, GO:0007275, GO:0044699, GO:0000904, GO:0000902, GO:0042330, GO:0048869, GO:0016043, GO:0032989, GO:0071840, GO:0048666, GO:0048667, GO:0032501, GO:0006935, GO:0030182, GO:0009987, GO:0044767, GO:0008150, GO:0007409, GO:0048731, GO:0042221, GO:0022008, GO:0048858, GO:0040011, GO:0048699, GO:0032990, GO:0009605, GO:0050896, GO:0048856, GO:0007399, GO:0048812, GO:0044763
GO:2000637 [BP]positive regulation of gene silencing by miRNAprobableGO:0050794, GO:0050789, GO:0060966, GO:0060147, GO:0060964, GO:0065007, GO:0048518, GO:0008150, GO:0060968, GO:0060148, GO:0048522
GO:0007427 [BP]epithelial cell migration, open tracheal systemprobableGO:0032502, GO:0006928, GO:0051674, GO:0001667, GO:0007275, GO:0044699, GO:0090132, GO:0016477, GO:0060541, GO:0032501, GO:0009987, GO:0008150, GO:0048731, GO:0051179, GO:0090130, GO:0040011, GO:0007424, GO:0010631, GO:0044707, GO:0048870, GO:0048856, GO:0044763
GO:0043202 [CC]lysosomal lumenprobableGO:0005737, GO:0044446, GO:0000323, GO:0043231, GO:0043233, GO:0005773, GO:0044464, GO:0043229, GO:0005775, GO:0005622, GO:0005764, GO:0070013, GO:0044444, GO:0044437, GO:0031974, GO:0005575, GO:0044424, GO:0005623, GO:0043227, GO:0043226, GO:0044422
GO:0009897 [CC]external side of plasma membraneprobableGO:0009986, GO:0016020, GO:0044464, GO:0005623, GO:0005575, GO:0071944, GO:0005886, GO:0044425, GO:0044459
GO:0006027 [BP]glycosaminoglycan catabolic processprobableGO:1901575, GO:0030203, GO:1901565, GO:1901136, GO:1901135, GO:0043170, GO:0008150, GO:0071704, GO:0006807, GO:0009056, GO:0008152, GO:0006022, GO:1901564, GO:0006026, GO:0009057
GO:0006024 [BP]glycosaminoglycan biosynthetic processprobableGO:1901576, GO:0044710, GO:0030203, GO:1901564, GO:1901566, GO:1901137, GO:1901135, GO:0043170, GO:0008150, GO:0071704, GO:0009058, GO:0009059, GO:0006807, GO:0008152, GO:0006022, GO:0006023
GO:0030204 [BP]chondroitin sulfate metabolic processprobableGO:0030203, GO:0006807, GO:0050654, GO:0009100, GO:0044710, GO:0044260, GO:0071704, GO:0009987, GO:0008150, GO:0008152, GO:0043436, GO:0044238, GO:1901564, GO:0006082, GO:0019538, GO:1901135, GO:0044237, GO:0043170, GO:0006029, GO:0006790, GO:0006022, GO:0044281
GO:0048627 [BP]myoblast developmentprobableGO:0032502, GO:0048856, GO:0048869, GO:0030154, GO:0048468, GO:0044767, GO:0061061, GO:0044763, GO:0045445, GO:0008150, GO:0009987, GO:0042692, GO:0044699
GO:0005975 [BP]carbohydrate metabolic processprobableGO:0044238, GO:0008150, GO:0008152, GO:0071704
GO:0006954 [BP]inflammatory responseprobableGO:0006952, GO:0050896, GO:0006950, GO:0008150, GO:0009611
GO:0008092 [MF]cytoskeletal protein bindingprobableGO:0003674, GO:0005488, GO:0005515
GO:0060429 [BP]epithelium developmentprobableGO:0032502, GO:0048856, GO:0008150, GO:0009888
GO:0004888 [MF]transmembrane signaling receptor activityprobableGO:0003674, GO:0038023, GO:0004872, GO:0004871, GO:0060089
GO:0030424 [CC]axonprobableGO:0044464, GO:0005623, GO:0005575, GO:0097458, GO:0043005, GO:0042995
GO:0005576 [CC]extracellular regionprobableGO:0005575
GO:0043234 [CC]protein complexprobableGO:0005575, GO:0032991
GO:0005796 [CC]Golgi lumenprobableGO:0005737, GO:0005794, GO:0043231, GO:0043229, GO:0043233, GO:0044464, GO:0044444, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0044431, GO:0005623, GO:0005575, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0009790 [BP]embryo developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0044767, GO:0008150, GO:0007275, GO:0044699
GO:0005925 [CC]focal adhesionprobableGO:0070161, GO:0005575, GO:0005912, GO:0005924, GO:0030054, GO:0030055
GO:0007155 [BP]cell adhesionprobableGO:0008150, GO:0009987, GO:0022610, GO:0044763, GO:0044699

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3ET6, chain A
Confidence level:very confident
Coverage over the Query: 4-71
View the alignment between query and template
View the model in PyMOL
Template: 1EJP, chain A
Confidence level:confident
Coverage over the Query: 68-101
View the alignment between query and template
View the model in PyMOL