Diaphorina citri psyllid: psy1931


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTSLKFPLLQKWQRLSHECEGHPLIKFL
cccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccccc
MYNGIGLTTARGSGTNGYVQRNWSL************************************KRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNV**********LGRVMDDTSLKFPLLQKWQRLSHECEGHPLIKFL
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MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTSLKFPLLQKWQRLSHECEGHPLIKFL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Serine/arginine repetitive matrix protein 2 Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate (By similarity). Binds to RNA.confidentQ9UQ35
Serine/arginine repetitive matrix protein 2 Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate. Binds to RNA.confidentQ8BTI8

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005681 [CC]spliceosomal complexprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2E62, chain A
Confidence level:confident
Coverage over the Query: 57-100
View the alignment between query and template
View the model in PyMOL