Psyllid ID: psy1931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTSLKFPLLQKWQRLSHECEGHPLIKFL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEccccccccccccccccHHHHHHccccccccccHHHHHHHHHcEEEHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHccccccHHHHHHHHHHHHHcccccccccccHHHcc
Coil and Loop (DISEMBL)
myngiglttargsgtngyvqrnwSLVRKTKEKTNLKTEKDLERMDAmnnkqpnreiLDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKnvekineppldelgrvmddtslkfpllQKWQRLsheceghplikfl
Flexible Loop (DISEMBL)
myngiglttargsgtngyvqrnwslvrktkektnlktekdlermdamnnkqpnreildhEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNknvekineppldeLGRVMDDTSLKFPLLQKwqrlsheceghplikfl
Low Complexity Region (SEG)
MYNGIGLTTARGSGTNGYVQRNWSLVRktkektnlktekdleRMDAMNNKQPNREILDHEKKRKIelqclelqelleeqGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTSLKFPLLQKWQRLSHECEGHPLIKFL
Disordered region (IsUnstruct)
****************GYVQRNWSL***************************************IELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTSLKFPLLQKWQRLSHECE********
Disordered Region (DISOPRED)
MYNGIGLTTARGSGTNGYVQRNW**************************************KRKIELQCLELQE**********EVDAKVMA*********************************************GHPLIKFL
Disordered Region (DISEMBL)
MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTSLKFPLLQKWQRLSHECEGHPLIKFL
Disordered Region (DISPRO)
***GIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNV**********LGRVMDDTSLKFPLLQKWQRLSHECEGHPLI*FL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTSLKFPLLQKWQRLSHECEGHPLIKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q9UQ35	2752	Serine/arginine repetitiv	yes	N/A	0.668	0.035	0.581	1e-21
Q8BTI8	2703	Serine/arginine repetitiv	yes	N/A	0.668	0.035	0.571	1e-20
Q4P0G6	348	Pre-mRNA-splicing factor	N/A	N/A	0.779	0.324	0.406	9e-15
P0CM94	205	Pre-mRNA-splicing factor	yes	N/A	0.786	0.556	0.338	3e-11
P0CM95	205	Pre-mRNA-splicing factor	N/A	N/A	0.786	0.556	0.338	3e-11
Q80WV7	648	Serine/arginine repetitiv	yes	N/A	0.427	0.095	0.467	2e-10
O14161	293	Pre-mRNA-splicing factor	yes	N/A	0.593	0.293	0.415	6e-10
A6NNA2	597	Serine/arginine repetitiv	no	N/A	0.613	0.149	0.368	1e-09
Q5AP89	162	Pre-mRNA-splicing factor	N/A	N/A	0.668	0.598	0.370	1e-09
Q6C0M9	284	Pre-mRNA-splicing factor	yes	N/A	0.496	0.253	0.4	2e-09

>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/98 (58%), Positives = 77/98 (78%), Gaps = 1/98 (1%)

Query: 1  MYNGIGLTTARGSGTNGYVQRNWSLVRKTK-EKTNLKTEKDLERMDAMNNKQPNREILDH 59
          MYNGIGL T RGSGTNGYVQRN SLVR  + E+ + K E++L R++A   K+PN +ILDH
Sbjct: 1  MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDH 60

Query: 60 EKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
          E+KR++EL+CLEL+E++EEQG+ E ++  KV  +RL L
Sbjct: 61 ERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLML 98

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate (By similarity). Binds to RNA.
Homo sapiens (taxid: 9606)

>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 OS=Mus musculus GN=Srrm2 PE=1 SV=3

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 76/98 (77%), Gaps = 1/98 (1%)

Query: 1  MYNGIGLTTARGSGTNGYVQRNWSLVRKTK-EKTNLKTEKDLERMDAMNNKQPNREILDH 59
          MYNGIGL T RGSGTNGYVQRN SLVR  + E+ + K E++L  ++A   K+PN +ILDH
Sbjct: 1  MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRHLEAALVKRPNPDILDH 60

Query: 60 EKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
          E+KR++EL+CLEL+E++EEQG+ E ++  KV  +RL L
Sbjct: 61 ERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLML 98

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate. Binds to RNA.

Mus musculus (taxid: 10090)

>sp|Q4P0G6|CWC21_USTMA Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC21 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 5/118 (4%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
           MYNGIGL TARG+GTNGYVQRN S     K++ N +   D   + +     P+  IL+HE
Sbjct: 1   MYNGIGLKTARGTGTNGYVQRNLSNFEAGKKRWNKRDATD--EVGSDTRLGPDAAILEHE 58

Query: 61  KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKN-VEKINEPPLD--ELGRV 115
           +KR +E++C+EL+  LE+    + E++ +V   R  LN    E+ NE      E GR 
Sbjct: 59  RKRAVEVKCMELRVELEDDDVADDEIEERVAQLRETLNAQLAEQTNESAASSYESGRA 116

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|P0CM94|CWC21_CRYNJ Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC21 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 13/127 (10%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVR-----KTKEKTNLKTEKDLERMDAMN-NKQPNR 54
           MY  +GL TARGSGTNGYV RN + +R        +      +  LE +     ++ P++
Sbjct: 1   MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQ 60

Query: 55  EILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGR 114
            IL+HE+KR++E++ +EL++ LEE+G  E +++ +    R  L    E++        GR
Sbjct: 61  GILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKLTAQPEQLG-------GR 113

Query: 115 VMDDTSL 121
            +D  SL
Sbjct: 114 GLDTHSL 120

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM95|CWC21_CRYNB Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC21 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 13/127 (10%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVR-----KTKEKTNLKTEKDLERMDAMN-NKQPNR 54
           MY  +GL TARGSGTNGYV RN + +R        +      +  LE +     ++ P++
Sbjct: 1   MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQ 60

Query: 55  EILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGR 114
            IL+HE+KR++E++ +EL++ LEE+G  E +++ +    R  L    E++        GR
Sbjct: 61  GILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKLTAQPEQLG-------GR 113

Query: 115 VMDDTSL 121
            +D  SL
Sbjct: 114 GLDTHSL 120

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q80WV7|SRRM3_MOUSE Serine/arginine repetitive matrix protein 3 OS=Mus musculus GN=Srrm3 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 46/62 (74%)

Query: 36 KTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRL 95
          + E++L   +    K+ +REILDHE+KR++EL+C+ELQE++EEQG++E E+  KV  +R 
Sbjct: 34 RAEEELRAAEPGLVKRAHREILDHERKRRVELKCMELQEMMEEQGYSEEEIRQKVGTFRQ 93

Query: 96 HL 97
           L
Sbjct: 94 ML 95

Mus musculus (taxid: 10090)

>sp|O14161|CWC21_SCHPO Pre-mRNA-splicing factor cwf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf21 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 3/89 (3%)

Query: 2  YNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEK 61
          YNGIGL T RGSGTNGYV RN S V+K  + TNL++ ++ +   A+  +  +  I +HE 
Sbjct: 3  YNGIGLPTPRGSGTNGYVMRNLSHVKKYDKNTNLQSNRNAK---ALEKRVQDPSISEHEC 59

Query: 62 KRKIELQCLELQELLEEQGFNEIEVDAKV 90
          +R+IE + L  +E L E+  ++   DA  
Sbjct: 60 RRQIESKLLLYREQLLEEVSSQHSTDAAA 88

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A6NNA2|SRRM3_HUMAN Serine/arginine repetitive matrix protein 3 OS=Homo sapiens GN=SRRM3 PE=2 SV=4

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 6/95 (6%)

Query: 3  NGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKK 62
          NG     +     NG+ Q +      +   T  + E++L   +    K+ +REILDHE+K
Sbjct: 7  NGAASMQSTPDAANGFPQPS------SSSGTWPRAEEELRAAEPGLVKRAHREILDHERK 60

Query: 63 RKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
          R++EL+C+ELQE++EEQG++E E+  KV  +R  L
Sbjct: 61 RRVELKCMELQEMMEEQGYSEEEIRQKVGTFRQML 95

Homo sapiens (taxid: 9606)

>sp|Q5AP89|CWC21_CANAL Pre-mRNA-splicing factor CWC21 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC21 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 11/108 (10%)

Query: 2   YNGIGLTTARGSGTNGYVQRNWS-LVRKTKEKTNLKTEKDL--ERMDAMNNKQPNRE--- 55
           YNGIGL + RGS T+G++Q+N +  + K     + K +K L  +R D     Q  RE   
Sbjct: 3   YNGIGLQSVRGSATSGHIQKNIANKISKPGHYESRKNQKSLMSKRADEAKQSQNKREAYK 62

Query: 56  -----ILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLN 98
                +  HE+ R+IE++C++L + LEEQG    E  A+V   R  LN
Sbjct: 63  QIKSELTKHEQLRRIEVKCMDLHDELEEQGVEPDETKARVDELRKKLN 110

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6C0M9|CWC21_YARLI Pre-mRNA-splicing factor CWC21 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC21 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 18/90 (20%)

Query: 2  YNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTE---------------KDLERMDA 46
          YNGIGL+T RGS T+G++Q N S   +  + TN + E               K L+R D 
Sbjct: 3  YNGIGLSTPRGSATSGHIQTNIS--NRAFQSTNHRGEFAHHEMTDEQDKRLNKKLDR-DY 59

Query: 47 MNNKQPNREILDHEKKRKIELQCLELQELL 76
            ++Q + E+L+HE+KRK+E+ C+ELQ+ L
Sbjct: 60 AADRQADVELLEHERKRKVEVACMELQDKL 89

Involved in pre-mRNA splicing. May function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome. May do so by stabilizing the catalytic center or the position of the RNA substrate.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
242017839	660	hypothetical protein Phum_PHUM431970 [Pe	0.8	0.175	0.598	4e-35
241601194	172	pre-mRNA-splicing factor CWC21, putative	0.806	0.680	0.593	8e-33
357625584	982	hypothetical protein KGM_00389 [Danaus p	0.758	0.112	0.557	7e-32
328719919	816	PREDICTED: hypothetical protein LOC10016	0.896	0.159	0.485	4e-29
346465287	188	hypothetical protein [Amblyomma maculatu	0.786	0.606	0.565	2e-28
443699144	248	hypothetical protein CAPTEDRAFT_176903 [	0.668	0.391	0.608	2e-28
260822179	819	hypothetical protein BRAFLDRAFT_91939 [B	0.668	0.118	0.618	4e-28
156402227	110	predicted protein [Nematostella vectensi	0.668	0.881	0.608	6e-28
443690247	117	hypothetical protein CAPTEDRAFT_105424 [	0.648	0.803	0.617	7e-28
126631795	200	Unknown (protein for IMAGE:7297131) [Xen	0.731	0.53	0.560	2e-27

>gi|242017839|ref|XP_002429393.1| hypothetical protein Phum_PHUM431970 [Pediculus humanus corporis] gi|212514312|gb|EEB16655.1| hypothetical protein Phum_PHUM431970 [Pediculus humanus corporis]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 96/117 (82%), Gaps = 1/117 (0%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
           MYNGIGL T RGSGTNGYVQRNW+ VRKTK+K + KT+++LE+++A +NKQPNREILDHE
Sbjct: 1   MYNGIGLQTPRGSGTNGYVQRNWAFVRKTKDKVHYKTDEELEKLEANSNKQPNREILDHE 60

Query: 61  KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYR-LHLNKNVEKINEPPLDELGRVM 116
           +KRK+E++C+EL+E+LE+QG+++ E++ KV  YR + +  N  K +E P DE GRV 
Sbjct: 61  RKRKMEVKCMELEEVLEDQGYSKEEIENKVTLYRNMLITSNSGKKSETPKDEFGRVA 117

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241601194|ref|XP_002405256.1| pre-mRNA-splicing factor CWC21, putative [Ixodes scapularis] gi|215502499|gb|EEC11993.1| pre-mRNA-splicing factor CWC21, putative [Ixodes scapularis]

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/118 (59%), Positives = 93/118 (78%), Gaps = 1/118 (0%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
           MYNGIGL TARGSGTNGYVQRN S V+++KEK N KTE+D++R+DA  N++ N+EILDHE
Sbjct: 29  MYNGIGLQTARGSGTNGYVQRNLSFVQRSKEKVNYKTEEDIQRLDAQMNRKANQEILDHE 88

Query: 61  KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKIN-EPPLDELGRVMD 117
           +KRK+E++CLELQE++EEQG+N+ E+D+KV   R  L +    ++   P DE GR MD
Sbjct: 89  RKRKLEIKCLELQEMMEEQGYNQEEIDSKVDELRQMLQQQAHLLDFGVPKDEAGRPMD 146

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625584|gb|EHJ75983.1| hypothetical protein KGM_00389 [Danaus plexippus]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 89/122 (72%), Gaps = 12/122 (9%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
           MYNGIGLTT RGSGTNGYVQRNW+ VRKTK+  N +TE+++ ++D+ +NKQPN+EILDHE
Sbjct: 1   MYNGIGLTTPRGSGTNGYVQRNWASVRKTKDSVNYRTEEEISKLDSASNKQPNQEILDHE 60

Query: 61  KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL------NKNVEKINEPPLDELGR 114
           +KRKIE++C EL++ LE QG    E+ A+V A+R  L      +K+V K      DE GR
Sbjct: 61  RKRKIEVKCAELEDSLEGQGLPREEIAARVAAFRAKLSETGGADKDVRK------DEYGR 114

Query: 115 VM 116
           V 
Sbjct: 115 VA 116

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719919|ref|XP_001943465.2| PREDICTED: hypothetical protein LOC100163695 isoform 1 [Acyrthosiphon pisum]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 96/134 (71%), Gaps = 4/134 (2%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
           MYNGIGL TARGSGTNGYVQRNW+ ++K K++T+ KT+++L ++D+  N+QPN+E+LDH+
Sbjct: 1   MYNGIGLATARGSGTNGYVQRNWAAIKKVKDQTSFKTDEELAKIDSAANRQPNQELLDHD 60

Query: 61  KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGR--VMDD 118
           +KRK+EL+C+EL++ LE+QGF++ E+  K+  +R+ L    +   E   DE GR  V D 
Sbjct: 61  RKRKVELKCIELEQSLEDQGFSQDEIIKKINNFRVTLLGKQKTATE--YDECGRPIVRDS 118

Query: 119 TSLKFPLLQKWQRL 132
                  L+K  RL
Sbjct: 119 HQFADEQLKKNARL 132

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465287|gb|AEO32488.1| hypothetical protein [Amblyomma maculatum]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 88/115 (76%), Gaps = 1/115 (0%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
           MYNGIGL TARGSGTNGYVQRN SLV++++EK   K+E+D++R+DA   ++ N EILDHE
Sbjct: 1   MYNGIGLQTARGSGTNGYVQRNLSLVQRSREKVAYKSEEDIQRLDAQLIRKANSEILDHE 60

Query: 61  KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEP-PLDELGR 114
           +KRK+E++CLELQE +EEQG+++ E+ AKV   R  L +    ++ P P DE GR
Sbjct: 61  RKRKLEIKCLELQETMEEQGYDQEEITAKVDELRELLQQQGHLLDFPVPKDEAGR 115

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443699144|gb|ELT98755.1| hypothetical protein CAPTEDRAFT_176903 [Capitella teleta]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 79/97 (81%)

Query: 1  MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
          MYNGIGL TARGSGTNGYVQRN SLVR TK+K N K+E++++++DA   + PN EIL HE
Sbjct: 1  MYNGIGLQTARGSGTNGYVQRNLSLVRHTKDKVNYKSEEEIKKLDAEMARPPNEEILAHE 60

Query: 61 KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
          +KRK+EL+C+E+QEL+E+QG+ + E+D KV  +R  L
Sbjct: 61 RKRKVELKCMEMQELMEDQGYTDEEIDRKVSTFRKML 97

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|260822179|ref|XP_002606480.1| hypothetical protein BRAFLDRAFT_91939 [Branchiostoma floridae] gi|229291822|gb|EEN62490.1| hypothetical protein BRAFLDRAFT_91939 [Branchiostoma floridae]

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 81/97 (83%)

Query: 1  MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
          MYNGIGL T RGSGTNGYV RNW+ +R  KEK N KTE++++++DA  +K+PN+EILDHE
Sbjct: 1  MYNGIGLNTPRGSGTNGYVTRNWAHIRGRKEKVNYKTEEEMKKLDAAMSKKPNQEILDHE 60

Query: 61 KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
          +KRK+EL+C+E+QEL+EEQG++E E+D KV  +R  L
Sbjct: 61 RKRKVELKCMEMQELMEEQGYSEEEIDRKVATFRRML 97

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156402227|ref|XP_001639492.1| predicted protein [Nematostella vectensis] gi|156226621|gb|EDO47429.1| predicted protein [Nematostella vectensis]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 79/97 (81%)

Query: 1  MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
          MYN IGLTTARGSGTNGYVQRN S VR  KEK + KT++DL +++ MN K+PN+EIL+H+
Sbjct: 1  MYNNIGLTTARGSGTNGYVQRNLSFVRNRKEKIDYKTDEDLAKLEMMNTKKPNKEILEHQ 60

Query: 61 KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
          KKR++EL+C+ELQ+++EEQG+++ EV  KV   R  L
Sbjct: 61 KKREVELKCMELQDMMEEQGYDDAEVQLKVTQLRAFL 97

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|443690247|gb|ELT92430.1| hypothetical protein CAPTEDRAFT_105424 [Capitella teleta]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 78/94 (82%)

Query: 1  MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
          MYNGIGL TARGSGTNGYVQRN SLVR TK+K N K+E++++++DA   + PN EIL HE
Sbjct: 1  MYNGIGLQTARGSGTNGYVQRNLSLVRHTKDKVNYKSEEEIKKLDAEMARPPNEEILAHE 60

Query: 61 KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYR 94
          +KRK+EL+C+E+QEL+E+QG+ + E+D KV  +R
Sbjct: 61 RKRKVELKCMEMQELMEDQGYTDEEIDRKVSTFR 94

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|126631795|gb|AAI33796.1| Unknown (protein for IMAGE:7297131) [Xenopus laevis]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 87/107 (81%), Gaps = 1/107 (0%)

Query: 1   MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
           MYNGIGLTT RGSGTNGYVQRN S VR  K++T+ K+E++L++++ +  K+PN++ILDHE
Sbjct: 1   MYNGIGLTTPRGSGTNGYVQRNLSSVRHKKDRTDYKSEEELKKLENLLMKKPNQDILDHE 60

Query: 61  KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLN-KNVEKINE 106
           +KRK+EL+CLEL+E++ EQG+N+ E+  KV  +RL L  K++ +I E
Sbjct: 61  RKRKVELKCLELEEMMAEQGYNDAEIQEKVATFRLMLQEKDLTQIKE 107

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
FB|FBgn0035253	1636	CG7971 [Drosophila melanogaste	0.813	0.072	0.4	1.7e-15
WB|WBGene00013260	425	rsr-2 [Caenorhabditis elegans	0.758	0.258	0.396	2.1e-14
ZFIN|ZDB-GENE-050522-399	1282	srrm2 "serine/arginine repetit	0.896	0.101	0.370	3e-14
UNIPROTKB|F1MI03	2724	SRRM2 "Uncharacterized protein	0.696	0.037	0.436	5.1e-13
UNIPROTKB|I3LCW3	2732	SRRM2 "Uncharacterized protein	0.696	0.036	0.436	5.1e-13
UNIPROTKB|Q9UQ35	2752	SRRM2 "Serine/arginine repetit	0.696	0.036	0.436	5.2e-13
MGI|MGI:1923206	2703	Srrm2 "serine/arginine repetit	0.696	0.037	0.436	6.5e-13
TAIR|locus:4515103226	591	AT3G49601 "AT3G49601" [Arabido	0.668	0.164	0.383	5.2e-10
ASPGD|ASPL0000005035	313	AN6586 [Emericella nidulans (t	0.8	0.370	0.282	1.4e-06
UNIPROTKB|G4NCN1	175	MGG_00370 "Pre-mRNA-splicing f	0.441	0.365	0.369	1.6e-06

FB|FBgn0035253 CG7971 [Drosophila melanogaster (taxid:7227)]

 Score = 210 (79.0 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 48/120 (40%), Positives = 65/120 (54%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXXXXXXXXXXXRMDAMNNKQPNREILDHE 60
             MYNGIGLTT RGSGTNG+VQRNW+ VR               ++DA  N+ PN+EILDH+
Sbjct:     1 MYNGIGLTTPRGSGTNGHVQRNWACVRPGKKDKDYRAEDDTKKLDAQLNRPPNKEILDHD 60

Query:    61 KKRKIXXXXXXXXXXXXXXGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTS 120
             +KRKI              G    E+ ++V ++R  L    +   +   DE GRV + T+
Sbjct:    61 RKRKIEVKCLELEDILEKQGRTPEEIKSQVDSFRQKLMGQGK--TDLAKDEFGRVANTTT 118

GO:0008380 "RNA splicing" evidence=ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

WB|WBGene00013260 rsr-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 191 (72.3 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXXXXXXXXXXXRMDAMNNKQPNREILDHE 60
             MYNGIGL TARGSGTNGYVQ N S +                +M+A  N++PN EI+DH 
Sbjct:     1 MYNGIGLQTARGSGTNGYVQSNLSHLMQARRKIEYNGEDDLRKMEAELNRKPNEEIMDHN 60

Query:    61 KKRKIXXXXXXXXXXXXXXGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDE 111
             +KR+I              G ++ +++ KV  YR +L K +E   E  +DE
Sbjct:    61 RKRQIEVKCTEFEMLLEDKGLDDEDIERKVGEYRKNLLKQLES-GELNVDE 110

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

ZFIN|ZDB-GENE-050522-399 srrm2 "serine/arginine repetitive matrix 2" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 50/135 (37%), Positives = 69/135 (51%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXXXXXXXXXXX---RMDAMNNKQPNREIL 57
             MYNGIGLTT RGSGTNGYVQRN S +R                  R+++  N+QPN +IL
Sbjct:     1 MYNGIGLTTPRGSGTNGYVQRNLSSIRVKRNRDERGGERDEKDKERLESQLNRQPNADIL 60

Query:    58 DHEKKRKIXXXXXXXXXXXXXXGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMD 117
             +H++KR++              G++  E++ KV  +RL L +  E    PP  E   V +
Sbjct:    61 EHQRKRQLEVKCAELQDMMEEQGYSAEEIEEKVNTFRLMLQERQEPA--PPPTEKTAVTE 118

Query:   118 DTSLKFPLLQKWQRL 132
               +L     QK  RL
Sbjct:   119 THALAAANQQKNDRL 133

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1MI03 SRRM2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 45/103 (43%), Positives = 57/103 (55%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXX-XXXXXXXXXRMDAMNNKQPNREILDH 59
             MYNGIGL T RGSGTNGYVQRN SLVR                R++A   K+PN +ILDH
Sbjct:     1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDH 60

Query:    60 EKKRKIXXXXXXXXXXXXXXGFNEIEVDAKVMAYRLHL-NKNV 101
             E+KR++              G+ E ++  KV  +RL L  K+V
Sbjct:    61 ERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDV 103

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

UNIPROTKB|I3LCW3 SRRM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 189 (71.6 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 45/103 (43%), Positives = 57/103 (55%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXX-XXXXXXXXXRMDAMNNKQPNREILDH 59
             MYNGIGL T RGSGTNGYVQRN SLVR                R++A   K+PN +ILDH
Sbjct:     1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDH 60

Query:    60 EKKRKIXXXXXXXXXXXXXXGFNEIEVDAKVMAYRLHL-NKNV 101
             E+KR++              G+ E ++  KV  +RL L  K+V
Sbjct:    61 ERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDV 103

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

UNIPROTKB|Q9UQ35 SRRM2 "Serine/arginine repetitive matrix protein 2" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 45/103 (43%), Positives = 57/103 (55%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXX-XXXXXXXXXRMDAMNNKQPNREILDH 59
             MYNGIGL T RGSGTNGYVQRN SLVR                R++A   K+PN +ILDH
Sbjct:     1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDH 60

Query:    60 EKKRKIXXXXXXXXXXXXXXGFNEIEVDAKVMAYRLHL-NKNV 101
             E+KR++              G+ E ++  KV  +RL L  K+V
Sbjct:    61 ERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDV 103

GO:0003723 "RNA binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0016607 "nuclear speck" evidence=IDA

GO:0070742 "C2H2 zinc finger domain binding" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1923206 Srrm2 "serine/arginine repetitive matrix 2" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 45/103 (43%), Positives = 57/103 (55%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXXXXXXXXXXXR-MDAMNNKQPNREILDH 59
             MYNGIGL T RGSGTNGYVQRN SLVR               R ++A   K+PN +ILDH
Sbjct:     1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRHLEAALVKRPNPDILDH 60

Query:    60 EKKRKIXXXXXXXXXXXXXXGFNEIEVDAKVMAYRLHL-NKNV 101
             E+KR++              G+ E ++  KV  +RL L  K+V
Sbjct:    61 ERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDV 103

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0070742 "C2H2 zinc finger domain binding" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

TAIR|locus:4515103226 AT3G49601 "AT3G49601" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 38/99 (38%), Positives = 52/99 (52%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXXXXXXXXXXXRMD--AMNNKQPNREILD 58
             MYNGIGL TARGSGTNGYVQ N   VR                 +  A  +K+PN+ IL+
Sbjct:     1 MYNGIGLQTARGSGTNGYVQTNKFFVRPRNGGKPVKGGKGFEDDEGTAGLSKKPNKAILE 60

Query:    59 HEKKRKIXXXXXXXXXXXXXXGFNEIEVDAKVMAYRLHL 97
             H++KR+I              G+++IE+  K+   R+ L
Sbjct:    61 HDRKRQIHLKLAILEDKLADQGYSDIEIAQKLEEARVSL 99

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000005035 AN6586 [Emericella nidulans (taxid:162425)]

 Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 35/124 (28%), Positives = 55/124 (44%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXXXX-----XXXXXXXRMDAMNNKQPNRE 55
             M + +GL+T RGSGT+GYVQ+N + +R                       +   +QP+R 
Sbjct:     1 MSSNVGLSTPRGSGTSGYVQKNHAFLRPRNTGAGAPYPSPSSSSKDGSESSFKQRQPDRA 60

Query:    56 ILDHEKKRKIXXXXXXXXXXXXXXGFNE-IEVDAKVMAYRLHLNKNVEKINEPPLDELGR 114
             IL+HE KR+I                NE +E        ++   + +EKI +   + L R
Sbjct:    61 ILEHEMKREIEVKVLEERERLED--INERVEEGKGREGEKVRSEEEIEKICDELRERLTR 118

Query:   115 VMDD 118
              M+D
Sbjct:   119 EMED 122

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4NCN1 MGG_00370 "Pre-mRNA-splicing factor cwc-21" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query:     1 MYNGIGLTTARGSGTNGYVQRNWSLVRXXXXXXXXXXXXXXXRMDAMNNKQPNREILDHE 60
             M + +GL+T RGSGT+GYVQRN + +R                +     +QP++ IL+H+
Sbjct:     1 MSDNVGLSTPRGSGTSGYVQRNLAQMRPRDSAAPYPPRGDVDSL-RHRQRQPDKGILEHD 59

Query:    61 KKRKI 65
             +KR+I
Sbjct:    60 RKREI 64

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BTI8	SRRM2_MOUSE	No assigned EC number	0.5714	0.6689	0.0358	yes	N/A
Q9UQ35	SRRM2_HUMAN	No assigned EC number	0.5816	0.6689	0.0352	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
pfam08312	46	pfam08312, cwf21, cwf21 domain	7e-10

>gnl|CDD|203903 pfam08312, cwf21, cwf21 domain

 Score = 51.0 bits (123), Expect = 7e-10
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 57  LDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVE 102
           L+HE+KR+IE++CLEL++ LEEQG +E E++ KV   R  L + +E
Sbjct: 1   LEHERKREIEVKCLELRDKLEEQGLSEEEIEEKVDELRKKLLEELE 46

The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG1869|consensus	425		100.0
PF08312	46	cwf21: cwf21 domain; InterPro: IPR013170 The cwf21	99.73

>KOG1869|consensus

Probab=100.00  E-value=5.2e-37  Score=268.35  Aligned_cols=107  Identities=50%  Similarity=0.671  Sum_probs=95.8

Q ss_pred             CCCCCCCCCCCcCCCccccccccccccccccccccc-cHHHHHHhhhhcCCCCChhHHhHHhhhHHHHHHHHHHHHHHHc
Q psy1931           1 MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLK-TEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQ   79 (145)
Q Consensus         1 MYNGIGL~TaRGSGTSGyVQrNls~~~~~~~~~~~~-~~~~~~~l~~~~~rkpn~eIleHerKR~IEvk~~ELrd~LEe~   79 (145)
                      |||||||+||||||||||||+|||||++++...++. ...+.+.+++...++||+.|++|++||+||+||+||++.|+++
T Consensus         1 mYNGIGL~tarGSgTnGyVQrNLs~vr~rr~~~~~~~~e~enr~~kA~l~Kkpnp~IleHerkRqIE~K~le~ee~lleq   80 (425)
T KOG1869|consen    1 MYNGIGLQTARGSGTNGYVQRNLSHVRRRRGQGPQQRGERENRIKKASLDKKPNPLILEHERKRQIELKLLELEESLLEQ   80 (425)
T ss_pred             CccccccccCCCCCccchhhhhhHhhhcccCCCcccchhhHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998777654 3445666777788999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy1931          80 GFNEIEVDAKVMAYRLHLNKNVEKINEP  107 (145)
Q Consensus        80 G~~eeEIe~kv~~lR~~Ll~e~~~~~~~  107 (145)
                      |+++++|+++|.++|..|+.+....++.
T Consensus        81 g~seeei~~k~~e~rknl~~~a~~~nE~  108 (425)
T KOG1869|consen   81 GLSEEEILSKVQEDRKNLLLRAKLTNEE  108 (425)
T ss_pred             hhhHHHHHHHHHHHHHhHHhhccCCccc
Confidence            9999999999999999999986434443

>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing

Probab=99.73  E-value=5.6e-18  Score=109.73  Aligned_cols=45  Identities=51%  Similarity=0.846  Sum_probs=37.8

Q ss_pred             HhHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q psy1931          57 LDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNV  101 (145)
Q Consensus        57 leHerKR~IEvk~~ELrd~LEe~G~~eeEIe~kv~~lR~~Ll~e~  101 (145)
                      |+|++||+|||||++|||+||++|+++++|+++|+.+|++|+++.
T Consensus         1 l~HerkR~IElk~~elrd~LEe~g~~~eeIe~kv~~~R~~L~~~~   45 (46)
T PF08312_consen    1 LEHERKREIELKCLELRDELEEQGYSEEEIEEKVDELRKKLLEEL   45 (46)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH--
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999999999999875

Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
2e62_A	61	Protein AT5G25060; CWF21 domain, structural genomi	99.46

>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}

Probab=99.46  E-value=6e-14  Score=94.94  Aligned_cols=44  Identities=36%  Similarity=0.539  Sum_probs=41.1

Q ss_pred             HhHHhhhHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHh
Q psy1931          57 LDHEKKRKIELQCLELQELLEEQGFN-EIEVDAKVMAYRLHLNKN  100 (145)
Q Consensus        57 leHerKR~IEvk~~ELrd~LEe~G~~-eeEIe~kv~~lR~~Ll~e  100 (145)
                      -.|.++|+|||||++|||+||++|+. +++|++||+.+|++|+++
T Consensus        13 e~r~klR~IEvk~me~rD~LEeqG~~~~~eI~~kV~~~RkkL~~~   57 (61)
T 2e62_A           13 EQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVD   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999975 699999999999999976

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	81.92

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.92  E-value=0.27  Score=28.90  Aligned_cols=19  Identities=32%  Similarity=0.726  Sum_probs=17.4

Q ss_pred             CCCCCCCCCcCCCcccccc
Q psy1931           3 NGIGLTTARGSGTNGYVQR   21 (145)
Q Consensus         3 NGIGL~TaRGSGTSGyVQr   21 (145)
                      |||-|....|||-+|-|.+
T Consensus        15 ~gidl~~i~GTG~~GRItk   33 (42)
T d1w85i_          15 KGVDIRLVQGTGKNGRVLK   33 (42)
T ss_dssp             TTCCTTTSCCCSGGGCCCH
T ss_pred             cCCCHHHCccCCCCCcEeH
Confidence            7999999999999998864