Diaphorina citri psyllid: psy2001


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MAPPPPQGQFQQPQQQHMQPKPLIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGAAGAPPPASTA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHccccHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccc
**********************LIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIRED***************************************NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDS******************
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MAPPPPQGQFQQPQQQHMQPKPLIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGAAGAPPPASTA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

No confident close homologs for annotation transfering were detected in SWISSPROT

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0035102 [CC]PRC1 complexprobableGO:0043234, GO:0005575, GO:0032991, GO:0031519, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0001739 [CC]sex chromatinprobableGO:0031974, GO:0043229, GO:0043228, GO:0000785, GO:0000228, GO:0043227, GO:0043226, GO:0005575, GO:0031981, GO:0005634, GO:0000803, GO:0044454, GO:0005694, GO:0000792, GO:0000790, GO:0005720, GO:0043231, GO:0043232, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0044446, GO:0070013, GO:0044428, GO:0044424, GO:0044427, GO:0044422
GO:0003682 [MF]chromatin bindingprobableGO:0003674, GO:0005488
GO:0071300 [BP]cellular response to retinoic acidprobableGO:1901700, GO:1901701, GO:0032526, GO:0033993, GO:0050896, GO:0009987, GO:0071396, GO:0051716, GO:0008150, GO:0071310, GO:0044763, GO:0070887, GO:0042221, GO:0010033, GO:0044699
GO:0016604 [CC]nuclear bodyprobableGO:0044446, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1PK1, chain B
Confidence level:very confident
Coverage over the Query: 118-186
View the alignment between query and template
View the model in PyMOL