Psyllid ID: psy2001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MAPPPPQGQFQQPQQQHMQPKPLIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGAAGAPPPASTA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHccccHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHccccccHHHHccccccccccccccccEEEcccHEEEEEEEEEEEcccccccccccHHHHHHHHccccccccccccccccHccccccccccccHccccccccccccccccHHHHHHHHHcccccHHHHHHHHHccccHHHHHHccHHHHHccccccHHHHHHHHHHHHHHcHccccccccccccccc
Coil and Loop (DISEMBL)
mappppqgqfqqpqqqhmqpkpliacywdkpittqatlpkttalvkpqILTHVIEGfviqesdqpfpvnrgacfdliredigtddgaplakklhleenvedkkplvgestgcpqtpslpnplkwTVTEVCDFIrnlpgcaeyVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAaegaagapppasta
Flexible Loop (DISEMBL)
MAPPPPQGQFQQPQQQHMQPKPLIACYWDKPITTQATLPKTTALVKPQILTHVIEGFViqesdqpfpVNRGACFDLIREDIGTDDGAPLAKKLHleenvedkkplvgestgcpqtpslpnplKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAegaagapppasta
Low Complexity Region (SEG)
MAppppqgqfqqpqqqhmqpkpLIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQaaegaagapppaSTA
Disordered region (IsUnstruct)
**********************LIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIREDIGTD************************************PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI********************
Disordered Region (DISOPRED)
***********************************************************************************************************************NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDS******************
Disordered Region (DISEMBL)
*******************PKPLIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM*****************
Disordered Region (DISPRO)
*******GQF*******MQPKPLIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIRED***************************************NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPPPPQGQFQQPQQQHMQPKPLIACYWDKPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGAAGAPPPASTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
P39769	1589	Polyhomeotic-proximal chr	yes	N/A	0.282	0.035	0.646	4e-21
Q64028	1012	Polyhomeotic-like protein	no	N/A	0.405	0.081	0.494	2e-18
Q8IXK0	858	Polyhomeotic-like protein	yes	N/A	0.326	0.076	0.606	2e-18
Q9QWH1	850	Polyhomeotic-like protein	no	N/A	0.326	0.077	0.606	2e-18
P78364	1004	Polyhomeotic-like protein	no	N/A	0.321	0.064	0.588	3e-18
Q4V7W5	344	Polyhomeotic-like protein	N/A	N/A	0.301	0.177	0.565	3e-18
Q8QHL5	827	Polyhomeotic-like protein	no	N/A	0.331	0.081	0.582	2e-17
Q8CHP6	981	Polyhomeotic-like protein	no	N/A	0.326	0.067	0.590	3e-17
Q8NDX5	983	Polyhomeotic-like protein	no	N/A	0.336	0.069	0.558	5e-17
Q1RNF8	542	Sterile alpha motif domai	no	N/A	0.341	0.127	0.492	9e-14

>sp|P39769|PHP_DROME Polyhomeotic-proximal chromatin protein OS=Drosophila melanogaster GN=ph-p PE=1 SV=2

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 55/65 (84%)

Query: 123  KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
             W+V +V +FIR LPGC +YV+DF  QEIDGQAL+LL+ KHL+ AM MKLGPALKIVAK+
Sbjct: 1512 SWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAMGMKLGPALKIVAKV 1571

Query: 183  DSMRQ 187
            +S+++
Sbjct: 1572 ESIKE 1576

Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. Component of the PcG multiprotein PRC1 complex, a complex that acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-118', rendering chromatin heritably changed in its expressibility. Plays a role in regulating the expression of other pair-rule genes such as eve, ftz, and H.
Drosophila melanogaster (taxid: 7227)

>sp|Q64028|PHC1_MOUSE Polyhomeotic-like protein 1 OS=Mus musculus GN=Phc1 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 9/91 (9%)

Query: 106  VGESTGCPQTPSL---------PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQAL 156
            +G +   P TP L          NP +W+V EV +FI +L GC E  E+F  QEIDGQAL
Sbjct: 921  LGNTITTPSTPELQGINPVFLSSNPSQWSVEEVYEFIASLQGCQEIAEEFRSQEIDGQAL 980

Query: 157  MLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ 187
            +LL+ +HLM AM++KLGPALKI AKI+ +++
Sbjct: 981  LLLKEEHLMSAMNIKLGPALKICAKINVLKE 1011

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Mus musculus (taxid: 10090)

>sp|Q8IXK0|PHC2_HUMAN Polyhomeotic-like protein 2 OS=Homo sapiens GN=PHC2 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 51/66 (77%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVA 180
           P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPALKI A
Sbjct: 791 PTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKIYA 850

Query: 181 KIDSMR 186
           +I  ++
Sbjct: 851 RISMLK 856

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Homo sapiens (taxid: 9606)

>sp|Q9QWH1|PHC2_MOUSE Polyhomeotic-like protein 2 OS=Mus musculus GN=Phc2 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 51/66 (77%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVA 180
           P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPALKI A
Sbjct: 783 PTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKIYA 842

Query: 181 KIDSMR 186
           +I  ++
Sbjct: 843 RISMLK 848

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Mus musculus (taxid: 10090)

>sp|P78364|PHC1_HUMAN Polyhomeotic-like protein 1 OS=Homo sapiens GN=PHC1 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 54/68 (79%)

Query: 120  NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
            NP +W+V EV +FI +L GC E  E+F  QEIDGQAL+LL+ +HLM AM++KLGPALKI 
Sbjct: 936  NPSRWSVEEVYEFIASLQGCQEIAEEFRSQEIDGQALLLLKEEHLMSAMNIKLGPALKIC 995

Query: 180  AKIDSMRQ 187
            AKI+ +++
Sbjct: 996  AKINVLKE 1003

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Homo sapiens (taxid: 9606)

>sp|Q4V7W5|PHC2_XENLA Polyhomeotic-like protein 2 OS=Xenopus laevis GN=phc2 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
           +P KW V +V DF+R+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPALK+ 
Sbjct: 276 DPTKWNVEDVYDFVRSLPGCQEISEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKLY 335

Query: 180 AKIDSMRQA 188
           A+I  ++ +
Sbjct: 336 ARISMLKDS 344

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Xenopus laevis (taxid: 8355)

>sp|Q8QHL5|PHC2_DANRE Polyhomeotic-like protein 2 OS=Danio rerio GN=phc2 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 50/67 (74%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
           +P KW V +V +FI +LPGC E  E+F  QEIDGQALMLL+  HLM  M++KLGPALKI 
Sbjct: 759 DPTKWNVEDVYEFICSLPGCHEIAEEFRSQEIDGQALMLLKEDHLMSTMNIKLGPALKIF 818

Query: 180 AKIDSMR 186
           A+I  ++
Sbjct: 819 ARISMLK 825

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Danio rerio (taxid: 7955)

>sp|Q8CHP6|PHC3_MOUSE Polyhomeotic-like protein 3 OS=Mus musculus GN=Phc3 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 51/66 (77%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVA 180
           P  WTV +V  FI +LPGC +  ++F  QEIDGQAL+LL+  HLM AM+MKLGPALKI A
Sbjct: 914 PSIWTVDDVWAFIHSLPGCQDVADEFRAQEIDGQALLLLKEDHLMSAMNMKLGPALKICA 973

Query: 181 KIDSMR 186
           +I+S++
Sbjct: 974 RINSLK 979

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Mus musculus (taxid: 10090)

>sp|Q8NDX5|PHC3_HUMAN Polyhomeotic-like protein 3 OS=Homo sapiens GN=PHC3 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 53/68 (77%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVA 180
           P  WTV +V  FI +LPGC +  ++F  QEIDGQAL+LL+  HLM AM++KLGPALKI A
Sbjct: 916 PSIWTVDDVWAFIHSLPGCQDIADEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKICA 975

Query: 181 KIDSMRQA 188
           +I+S++++
Sbjct: 976 RINSLKES 983

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Homo sapiens (taxid: 9606)

>sp|Q1RNF8|SAM11_MOUSE Sterile alpha motif domain-containing protein 11 OS=Mus musculus GN=Samd11 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query: 114 QTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLG 173
           +T +L +  KWTV +VC+F+  L GC EY   F  Q IDG+ L LL  +HL+  M +KLG
Sbjct: 394 ETTTLEDVNKWTVDDVCNFVGGLSGCGEYARVFGEQGIDGETLPLLTEEHLLNTMGLKLG 453

Query: 174 PALKIVAKI 182
           PALKI A++
Sbjct: 454 PALKIRAQV 462

May play a role in photoreceptor development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
319803029	1024	polyhomeotic [Bombyx mori] gi|317175917|	0.727	0.143	0.444	5e-31
345485330	978	PREDICTED: hypothetical protein LOC10011	0.450	0.093	0.680	2e-28
307194567	847	Polyhomeotic-like protein 2 [Harpegnatho	0.420	0.100	0.715	2e-27
332023160	915	Polyhomeotic-like protein 1 [Acromyrmex	0.440	0.097	0.666	9e-27
340708981	1008	PREDICTED: hypothetical protein LOC10065	0.331	0.066	0.820	9e-27
307190365	943	Polyhomeotic-like protein 2 [Camponotus	0.346	0.074	0.805	1e-26
350418939	907	PREDICTED: hypothetical protein LOC10074	0.331	0.073	0.820	1e-26
328791668	956	PREDICTED: hypothetical protein LOC41211	0.331	0.070	0.820	1e-26
383864917	915	PREDICTED: uncharacterized protein LOC10	0.331	0.073	0.820	2e-26
321476597	285	hypothetical protein DAPPUDRAFT_312028 [	0.356	0.252	0.75	2e-25

>gi|319803029|ref|NP_001188364.1| polyhomeotic [Bombyx mori] gi|317175917|dbj|BAJ54074.1| polyhomeotic [Bombyx mori]

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 111/189 (58%), Gaps = 42/189 (22%)

Query: 38   LPKTTALVKPQILTHVIEGFVIQESDQPFPVNRGACFDLIRED----IGTDDGAPLAKKL 93
            LPK  A+VKP ILTHVIEG+VIQE+ +PF VNR       +ED    + + D  P  K++
Sbjct: 835  LPK--AMVKPNILTHVIEGYVIQEAGEPFAVNRPLREWADKEDKENKLPSSDEPPRKKQM 892

Query: 94   ----------------HLEE--------------NVE--DKKPLVGESTGCPQTPSLPNP 121
                            H+ E              NVE  D +P   +S        +PN 
Sbjct: 893  LEGGASLPRISSSNDNHVSESSTRDANVKAEASSNVEMADSQPTSADSAQA----KIPNA 948

Query: 122  LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAK 181
             KWTV EVC+FIRN+PGCA Y ++F MQE+DG+AL+L++ +HL+ A+SMKLGPALKIVA 
Sbjct: 949  NKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVAC 1008

Query: 182  IDSMRQAAE 190
            IDS+R  +E
Sbjct: 1009 IDSLRPESE 1017

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485330|ref|XP_001600580.2| PREDICTED: hypothetical protein LOC100116013 [Nasonia vitripennis]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 74/94 (78%), Gaps = 3/94 (3%)

Query: 95  LEENVEDKKPLVGESTGCPQTPSLP--NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID 152
           +++N EDK  L   +       SLP  NP+KWTV EVCDFIRNLPGC++Y EDFA+QEID
Sbjct: 871 IKKNGEDKS-LANLANNAAIEDSLPKINPVKWTVNEVCDFIRNLPGCSDYAEDFAIQEID 929

Query: 153 GQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186
           GQALMLL+  HLM AMS+KLGPALKIVAKIDSMR
Sbjct: 930 GQALMLLKEDHLMSAMSIKLGPALKIVAKIDSMR 963

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194567|gb|EFN76859.1| Polyhomeotic-like protein 2 [Harpegnathos saltator]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 3/88 (3%)

Query: 101 DKKPLVGESTGCPQTPSLP--NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALML 158
           +++PL   ST      SLP  NP+KWTV EVCDFIR LPGCA+Y EDFA+QEIDGQALML
Sbjct: 749 EERPL-STSTTSSIDESLPKVNPVKWTVNEVCDFIRGLPGCADYAEDFAIQEIDGQALML 807

Query: 159 LQAKHLMEAMSMKLGPALKIVAKIDSMR 186
           L+  HLM AMS+KLGPALKIVAKIDSMR
Sbjct: 808 LKEDHLMSAMSIKLGPALKIVAKIDSMR 835

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023160|gb|EGI63416.1| Polyhomeotic-like protein 1 [Acromyrmex echinatior]

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 73/93 (78%), Gaps = 4/93 (4%)

Query: 96  EENVEDKKPLVGESTGCPQTPSLP--NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG 153
           ++N ED+   +  +T      SLP  NP+KWTV EVC+FIR LPGCA+Y EDFA+QEIDG
Sbjct: 813 KKNGEDRS--LSATTTSSIDESLPKVNPIKWTVGEVCEFIRGLPGCADYAEDFAIQEIDG 870

Query: 154 QALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186
           QALMLL+  HLM AMS+KLGPALKIVAKIDSMR
Sbjct: 871 QALMLLKEDHLMSAMSIKLGPALKIVAKIDSMR 903

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708981|ref|XP_003393095.1| PREDICTED: hypothetical protein LOC100651592 [Bombus terrestris]

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 61/67 (91%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
           NP+KWTV EVCDFIR LPGCA+Y EDFA+QEIDGQALMLL+  HLM AMS+KLGPALKIV
Sbjct: 929 NPVKWTVGEVCDFIRGLPGCADYAEDFAIQEIDGQALMLLKEDHLMSAMSIKLGPALKIV 988

Query: 180 AKIDSMR 186
           A+IDSMR
Sbjct: 989 ARIDSMR 995

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190365|gb|EFN74424.1| Polyhomeotic-like protein 2 [Camponotus floridanus]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 64/72 (88%), Gaps = 2/72 (2%)

Query: 117 SLP--NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGP 174
           SLP  NP+KWTV EVCDFIR LPGCA+Y EDFA+QEIDGQALMLL+  HLM AMS+KLGP
Sbjct: 858 SLPKVNPVKWTVGEVCDFIRGLPGCADYAEDFAIQEIDGQALMLLKEDHLMSAMSIKLGP 917

Query: 175 ALKIVAKIDSMR 186
           ALKIVA+IDSMR
Sbjct: 918 ALKIVARIDSMR 929

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418939|ref|XP_003492018.1| PREDICTED: hypothetical protein LOC100746866 [Bombus impatiens]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 61/67 (91%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
           NP+KWTV EVCDFIR LPGCA+Y EDFA+QEIDGQALMLL+  HLM AMS+KLGPALKIV
Sbjct: 828 NPVKWTVGEVCDFIRGLPGCADYAEDFAIQEIDGQALMLLKEDHLMSAMSIKLGPALKIV 887

Query: 180 AKIDSMR 186
           A+IDSMR
Sbjct: 888 ARIDSMR 894

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791668|ref|XP_395583.4| PREDICTED: hypothetical protein LOC412117 [Apis mellifera]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 61/67 (91%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
           NP+KWTV EVCDFIR LPGCA+Y EDFA+QEIDGQALMLL+  HLM AMS+KLGPALKIV
Sbjct: 876 NPVKWTVGEVCDFIRGLPGCADYAEDFAIQEIDGQALMLLKEDHLMSAMSIKLGPALKIV 935

Query: 180 AKIDSMR 186
           A+IDSMR
Sbjct: 936 ARIDSMR 942

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864917|ref|XP_003707924.1| PREDICTED: uncharacterized protein LOC100880362 [Megachile rotundata]

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 61/67 (91%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
           NP+KWTV EVCDFIR LPGCA+Y EDFA+QEIDGQALMLL+  HLM AMS+KLGPALKIV
Sbjct: 835 NPVKWTVGEVCDFIRGLPGCADYAEDFAIQEIDGQALMLLKEDHLMSAMSIKLGPALKIV 894

Query: 180 AKIDSMR 186
           A+IDSMR
Sbjct: 895 ARIDSMR 901

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476597|gb|EFX87557.1| hypothetical protein DAPPUDRAFT_312028 [Daphnia pulex]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 62/72 (86%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
           NP KW+VTEV DF+R+L GCA+Y EDFA+QEIDGQALMLL+A HLM AMSMKLGPALKI 
Sbjct: 200 NPAKWSVTEVADFVRSLTGCADYAEDFALQEIDGQALMLLKADHLMSAMSMKLGPALKIC 259

Query: 180 AKIDSMRQAAEG 191
           AKID+MR A+  
Sbjct: 260 AKIDAMRGASSS 271

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
UNIPROTKB|I3LIR0	343	PHC2 "Uncharacterized protein"	0.341	0.201	0.6	9.6e-29
UNIPROTKB|F1LSG5	422	Phc2 "Protein Phc2" [Rattus no	0.341	0.163	0.6	6.6e-28
UNIPROTKB|I3LEW6	335	PHC2 "Uncharacterized protein"	0.316	0.191	0.609	1e-27
UNIPROTKB|B3KPJ4	464	PHC2 "cDNA FLJ31867 fis, clone	0.341	0.148	0.6	1.2e-27
UNIPROTKB|Q4V7W5	344	phc2 "Polyhomeotic-like protei	0.341	0.200	0.585	1.2e-27
UNIPROTKB|F5GX30	610	PHC1 "Polyhomeotic-like protei	0.405	0.134	0.505	8.3e-27
UNIPROTKB|E2RF26	829	PHC2 "Uncharacterized protein"	0.341	0.083	0.6	1.1e-26
MGI|MGI:1860454	850	Phc2 "polyhomeotic-like 2 (Dro	0.341	0.081	0.6	1.2e-26
UNIPROTKB|D4A0M3	850	Phc2 "Polyhomeotic-like 2 (Dro	0.341	0.081	0.6	1.2e-26
UNIPROTKB|E1BFG7	854	PHC2 "Uncharacterized protein"	0.341	0.080	0.6	1.2e-26

UNIPROTKB|I3LIR0 PHC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:   118 LPN-PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPAL 176
             LP+ P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPAL
Sbjct:   272 LPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAL 331

Query:   177 KIVAKIDSMR 186
             KI A+I  ++
Sbjct:   332 KIYARISMLK 341

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1LSG5 Phc2 "Protein Phc2" [Rattus norvegicus (taxid:10116)]

 Score = 217 (81.4 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:   118 LPN-PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPAL 176
             LP+ P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPAL
Sbjct:   351 LPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAL 410

Query:   177 KIVAKIDSMR 186
             KI A+I  ++
Sbjct:   411 KIYARISMLK 420

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3LEW6 PHC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 208 (78.3 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
 Identities = 39/64 (60%), Positives = 50/64 (78%)

Query:   123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
             KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPALKI A+I
Sbjct:   270 KWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKIYARI 329

Query:   183 DSMR 186
               ++
Sbjct:   330 SMLK 333

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|B3KPJ4 PHC2 "cDNA FLJ31867 fis, clone NT2RP7001856, highly similar to Polyhomeotic-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:   118 LPN-PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPAL 176
             LP+ P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPAL
Sbjct:   393 LPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAL 452

Query:   177 KIVAKIDSMR 186
             KI A+I  ++
Sbjct:   453 KIYARISMLK 462

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q4V7W5 phc2 "Polyhomeotic-like protein 2" [Xenopus laevis (taxid:8355)]

 Score = 216 (81.1 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
 Identities = 41/70 (58%), Positives = 54/70 (77%)

Query:   118 LPN-PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPAL 176
             LP+ P KW V +V DF+R+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPAL
Sbjct:   273 LPSDPTKWNVEDVYDFVRSLPGCQEISEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAL 332

Query:   177 KIVAKIDSMR 186
             K+ A+I  ++
Sbjct:   333 KLYARISMLK 342

GO:0031519 "PcG protein complex" evidence=ISS

GO:0035102 "PRC1 complex" evidence=ISS

UNIPROTKB|F5GX30 PHC1 "Polyhomeotic-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 8.3e-27, Sum P(2) = 8.3e-27
 Identities = 46/91 (50%), Positives = 61/91 (67%)

Query:   106 VGESTGCPQTPSL----P-----NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQAL 156
             +G     P TP L    P     NP +W+V EV +FI +L GC E  E+F  QEIDGQAL
Sbjct:   519 LGNPNTAPPTPELHGINPVFLSSNPSRWSVEEVYEFIASLQGCQEIAEEFRSQEIDGQAL 578

Query:   157 MLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ 187
             +LL+ +HLM AM++KLGPALKI AKI+ +++
Sbjct:   579 LLLKEEHLMSAMNIKLGPALKICAKINVLKE 609

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RF26 PHC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:   118 LPN-PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPAL 176
             LP+ P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPAL
Sbjct:   758 LPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAL 817

Query:   177 KIVAKIDSMR 186
             KI A+I  ++
Sbjct:   818 KIYARISMLK 827

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1860454 Phc2 "polyhomeotic-like 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 217 (81.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:   118 LPN-PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPAL 176
             LP+ P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPAL
Sbjct:   779 LPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAL 838

Query:   177 KIVAKIDSMR 186
             KI A+I  ++
Sbjct:   839 KIYARISMLK 848

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IGI

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISO;IDA

GO:0035102 "PRC1 complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|D4A0M3 Phc2 "Polyhomeotic-like 2 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 217 (81.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:   118 LPN-PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPAL 176
             LP+ P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPAL
Sbjct:   779 LPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAL 838

Query:   177 KIVAKIDSMR 186
             KI A+I  ++
Sbjct:   839 KIYARISMLK 848

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035102 "PRC1 complex" evidence=IEA

UNIPROTKB|E1BFG7 PHC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 217 (81.4 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:   118 LPN-PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPAL 176
             LP+ P KW V +V +FIR+LPGC E  E+F  QEIDGQAL+LL+  HLM AM++KLGPAL
Sbjct:   783 LPSEPTKWNVDDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAL 842

Query:   177 KIVAKIDSMR 186
             KI A+I  ++
Sbjct:   843 KIYARISMLK 852

GO:0035102 "PRC1 complex" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
cd09577	69	cd09577, SAM_Ph1,2,3, SAM domain of Ph (polyhomeot	2e-38
cd09509	64	cd09509, SAM_Polycomb, SAM domain of Polycomb grou	2e-31
cd09579	68	cd09579, SAM_Samd7,11, SAM domain of Samd7,11 subf	8e-24
cd09582	66	cd09582, SAM_Scm-like-3MBT3,4, SAM domain of Scm-l	8e-18
cd09581	85	cd09581, SAM_Scm-like-4MBT1,2, SAM domain of Scm-l	3e-15
cd09578	72	cd09578, SAM_Scm, SAM domain of Scm proteins of Po	1e-14
cd09583	69	cd09583, SAM_Atherin-like, SAM domain of Atherin/A	3e-12
pfam00536	62	pfam00536, SAM_1, SAM domain (Sterile alpha motif)	2e-11
smart00454	68	smart00454, SAM, Sterile alpha motif	9e-11
cd09580	67	cd09580, SAM_Scm-like-4MBT, SAM domain of Scm-like	2e-10
cd09534	62	cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fun	8e-08
cd09505	72	cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins	2e-07
pfam07647	66	pfam07647, SAM_2, SAM domain (Sterile alpha motif)	2e-06
cd09528	64	cd09528, SAM_Samd9_Samd9L, SAM domain of Samd9/Sam	3e-06
cd09487	56	cd09487, SAM_superfamily, SAM (Sterile alpha motif	3e-05
cd09535	65	cd09535, SAM_BOI-like_fungal, SAM domain of BOI-li	6e-05
cd09530	67	cd09530, SAM_Samd14, SAM domain of Samd14 subfamil	1e-04
cd09512	70	cd09512, SAM_Neurabin-like, SAM domain of SAM_Neur	8e-04
cd09507	65	cd09507, SAM_DGK-delta-eta, SAM domain of diacylgl	0.002
cd09510	75	cd09510, SAM_aveugle-like, SAM domain of aveugle-l	0.004

>gnl|CDD|188976 cd09577, SAM_Ph1,2,3, SAM domain of Ph (polyhomeotic) proteins of Polycomb group

 Score =  126 bits (319), Expect = 2e-38
 Identities = 43/69 (62%), Positives = 58/69 (84%)

Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKI 178
            NP KW+V +V +FIR+LPGC++Y E+F  QEIDGQAL+LL+  HLM AM++KLGPALKI
Sbjct: 1   SNPSKWSVEDVYEFIRSLPGCSDYAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKI 60

Query: 179 VAKIDSMRQ 187
            AKI+S+++
Sbjct: 61  CAKINSLKE 69

SAM (sterile alpha motif) domain of Ph (polyhomeotic) proteins of Polycomb group is a protein-protein interaction domain. Ph1,2,3 proteins are members of PRC1 complex. This complex is involved in transcriptional repression of Hox (Homeobox) cluster genes. It is recruited through methylated H3Lys27 and supports the repression state by mediating monoubiquitination of histone H2A. Proteins of the Ph1,2,3 subfamily contribute to anterior-posterior neural tissue specification during embryogenesis. Additionally, the P2 protein of zebrafish is known to be involved in epiboly and tailbud formation. SAM domains of Ph proteins may interact with each other, forming homooligomers, as well as with SAM domains of other proteins, in particular with the SAM domain of Scm (sex comb on midleg) proteins, forming heterooligomers. Homooligomers are similar to the ones formed by SAM Pointed domains of the TEL proteins. Such SAM/SAM oligomers apparently play a role in transcriptional repression through polymerization along the chromosome. Length = 69

>gnl|CDD|188908 cd09509, SAM_Polycomb, SAM domain of Polycomb group

 Score =  108 bits (272), Expect = 2e-31
 Identities = 36/64 (56%), Positives = 44/64 (68%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVA 180
           P KW+V +V  FI++L GCAEY E F  QEIDGQAL+LL    L++ M +KLGPALKI  
Sbjct: 1   PSKWSVDDVAQFIKSLDGCAEYAEVFREQEIDGQALLLLTEDDLLKGMGLKLGPALKIYN 60

Query: 181 KIDS 184
            I  
Sbjct: 61  HIVK 64

SAM (sterile alpha motif) domain of Polycomb group is a protein-protein interaction domain. The Polycomb group includes transcriptional repressors which are involved in the regulation of some key regulatory genes during development in many organisms. They are best known for silencing Hox (Homeobox) genes. Polycomb proteins work together in large multimeric and chromatin-associated complexes. They organize chromatin of the target genes and maintain repressed states during many cell divisions. Polycomb proteins are classified based on their common function, but not on conserved domains and/or motifs; however many Polycomb proteins (members of PRC1 class complex) contain SAM domains which are more similar to each other inside of the Polycomb group than to SAM domains outside of it. Most information about structure and function of Polycomb SAM domains comes from studies of Ph (Polyhomeotic) and Scm (Sex comb on midleg) proteins. Polycomb SAM domains usually can be found at the C-terminus of the proteins. Some members of this group contain, in addition to the SAM domain, MTB repeats, Zn finger, and/or DUF3588 domains. Polycomb SAM domains can form homo- and/or heterooligomers through ML and EH surfaces. SAM/SAM oligomers apparently play a role in transcriptional repression through polymerization along the chromosome. Polycomb proteins are known to be highly expressed in some cells years before their cancer pathology; thus they are attractive markers for early cancer therapy. Length = 64

>gnl|CDD|188978 cd09579, SAM_Samd7,11, SAM domain of Samd7,11 subfamily of Polycomb group

 Score = 89.0 bits (221), Expect = 8e-24
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query: 122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAK 181
            KWTV +VC FI +LPGCAEY + F    IDG+ L LL  +HL+  M +KLGPALKI ++
Sbjct: 2   RKWTVDDVCSFIGSLPGCAEYAQVFREHSIDGETLPLLTEEHLLNTMGLKLGPALKIRSQ 61

Query: 182 I 182
           +
Sbjct: 62  V 62

SAM (sterile alpha motif) domain is a protein-protein interaction domain. Phylogenetic analysis suggests that proteins of this subfamily are most closely related to SAM-Ph1,2,3 subfamily of Polycomb group. They are predicted transcriptional repressors in photoreceptor cells and pinealocytes of vertebrates. SAM domain containing protein 11 is also known as Mr-s (major retinal SAM) protein. In mouse, it is predominantly expressed in developing retinal photoreceptors and in adult pineal gland. The SAM domain is involved in homooligomerization of whole proteins (it was shown based on immunoprecipitation assay and mutagenesis), however its repression activity is not due to SAM/SAM interactions but to the C-terminal region. Length = 68

>gnl|CDD|188981 cd09582, SAM_Scm-like-3MBT3,4, SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group

 Score = 73.5 bits (181), Expect = 8e-18
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVA 180
            L+W+V EV +F+++LPGC E+ + F  ++IDG+A +LL    L++ + +KLGPALKI  
Sbjct: 1   VLRWSVDEVAEFVQSLPGCEEHAKVFRDEQIDGEAFLLLTQSDLVKILGIKLGPALKIYN 60

Query: 181 KI 182
            I
Sbjct: 61  SI 62

SAM (sterile alpha motif) domain of Scm-like-3MBT3,4 (Sex comb on midleg, Malignant brain tumor) subfamily proteins (also known as L3mbtl3,4 proteins) is a putative protein-protein interaction domain. Proteins of this subfamily are predicted transcriptional regulators belonging to Polycomb group. The majority of them are multidomain proteins: in addition to the C-terminal SAM domain, they contain three MBT repeats and Zn finger domain. Murine L3mbtl3 protein of this subfamily is essential for maturation of myeloid progenitor cells during differentiation. Human L3mbtl4 is a potential tumor suppressor gene in breast cancer, while deregulation of L3MBTL3 is associated with neuroblastoma. Length = 66

>gnl|CDD|188980 cd09581, SAM_Scm-like-4MBT1,2, SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group

 Score = 67.5 bits (165), Expect = 3e-15
 Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
           NPL W+V +V  FI++   CA   + F  QEIDGQAL+LL    + E M +KLGPA+K+ 
Sbjct: 11  NPLFWSVDDVVRFIKS-TDCAPLAKIFKDQEIDGQALLLLTLPTVQECMELKLGPAIKLC 69

Query: 180 AKIDSMRQA 188
             I+ ++ A
Sbjct: 70  HHIERVKVA 78

SAM (sterile alpha motif) domain of Scm-like-4MBT1,2 (Sex comb on midleg, Malignant Brain Tumor) subfamily proteins (also known as Sfmbt1,2 proteins) is a putative protein-protein interaction domain. Proteins of this subfamily are transcriptional regulators belonging to Polycomb group. The majority of them are multidomain proteins: in addition to the C-terminal SAM domain, they contain four MBT repeats and DUF5388 domain. The MBT repeats of the human sfmbt1 protein are responsible for association with the nuclear matrix and for selective binding of H3 histone N-terminal tails, while the exact function of the SAM domain is unclear. Length = 85

>gnl|CDD|188977 cd09578, SAM_Scm, SAM domain of Scm proteins of Polycomb group

 Score = 65.1 bits (159), Expect = 1e-14
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 120 NPLKWTVTEVCDFIRNL--PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALK 177
           +P  W+V +V  FI+       A +V+ F   EIDG+AL+LL +  +M+ M +KLGPALK
Sbjct: 3   DPSTWSVEDVVQFIKEADPQALAPHVDLFRKHEIDGKALLLLNSDMMMKYMGLKLGPALK 62

Query: 178 IVAKIDSMRQ 187
           +   ID ++Q
Sbjct: 63  LCYHIDKLKQ 72

SAM (sterile alpha motif) domain of Scm (Sex comb on midleg) subfamily of Polycomb group is a protein-protein interaction domain. Proteins of this subfamily are transcriptional repressors associated with PRC1 complex. This group includes invertebrate Scm protein and chordate Scm homolog 1 and Scm-like 1, 2, 3 proteins. Most have a SAM domain, two MBT repeats, and a DUF3588 domain, except Scm-like 4 proteins which do not have MBT repeats. Originally the Scm protein was described in Drosophila as a regulator required for proper spatial expression of homeotic genes. It plays a major role during early embryogenesis. SAM domains of Scm proteins can interact with each other, forming homooligomers, as well as with SAM domains of other proteins, in particular with SAM domains of Ph (polyhomeotic) proteins, forming heterooligomers. Homooligomers are similar to the ones formed by SAM Pointed domains of the TEL proteins. Such SAM/SAM oligomers apparently play a role in transcriptional repression through polymerization along the chromosome. Mammalian Scmh1 protein is known be indispensible member of PRC1 complex; it plays a regulatory role for the complex during meiotic prophase of male sperm cells, and is particularly involved in regulation of chromatin modification at the XY chromatin domain of the pachytene spermatocytes. Length = 72

>gnl|CDD|188982 cd09583, SAM_Atherin-like, SAM domain of Atherin/Atherin-like subfamily

 Score = 59.2 bits (144), Expect = 3e-12
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVA 180
           P  W+V +V  + +   G  E    F  QEIDG++L+LL    ++  +S+KLGPALKI  
Sbjct: 1   PSNWSVEDVVQYFKTA-GFPEEANAFKEQEIDGKSLLLLTRSDVLTGLSLKLGPALKIYE 59

Query: 181 KIDSMRQ 187
            +  ++Q
Sbjct: 60  HVVKLQQ 66

SAM (sterile alpha motif) domain of SAM_Atherin and Atherin-like subfamily proteins is a putative protein-protein and/or protein-lipid interaction domain. In addition to the C-terminal SAM domain, the majority of proteins belonging to this group also have PHD (or Zn finger) domain. As potential members of the polycomb group, these proteins may be involved in regulation of some key regulatory genes during development. Atherin can be recruited by Ruk/CIN85 kinase-binding proteins via its SH3 domains thus participating in the signal transferring kinase cascades. Also, atherin was found associated with low density lipids (LDL) in atherosclerotic lesions in human. It was suggested that atherin plays an essential role in atherogenesis via immobilization of LDL in the arterial wall. SAM domains of atherins are predicted to form polymers. Inhibition of polymer formation could be a potential antiatherosclerotic therapy. Length = 69

>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif)

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
           W+V +V +++ ++ G  +Y ++F    IDG AL+LL  + L++      G   KI++ I 
Sbjct: 1   WSVEDVGEWLESI-GLGQYADNFRAGYIDGDALLLLTEEDLLKLGVTLPGHRKKILSSIQ 59

Query: 184 SMR 186
            ++
Sbjct: 60  GLK 62

It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains. Length = 62

>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif

 Score = 55.4 bits (134), Expect = 9e-11
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIV 179
             +W+   V D++ ++ G  +Y ++F    IDG  L+LL ++  ++ + + KLG   KI+
Sbjct: 1   VSQWSPESVADWLESI-GLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKIL 59

Query: 180 AKIDSMRQ 187
             I  +++
Sbjct: 60  KAIQKLKE 67

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation. Length = 68

>gnl|CDD|188979 cd09580, SAM_Scm-like-4MBT, SAM domain of Scm-like-4MBT proteins of Polycomb group

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVA 180
           P  W V +V  F+R    C  Y E F  Q IDG+ L+ L  + +M    MK+GP+LKI  
Sbjct: 1   PSTWGVKDVSQFLR-ENDCGAYCECFCRQNIDGKRLLSLTKEQIMTLTGMKVGPSLKIYD 59

Query: 181 KIDSMR 186
            I  ++
Sbjct: 60  LIQQLK 65

SAM (sterile alpha motif) domain of Scm-like-4MBT (Sex comb on midleg like, Malignant Brain Tumor) subfamily proteins of the polycomb group is a putative protein-protein interaction domain. Additionally to the SAM domain, most of the proteins of this subfamily have 4 MBT repeats. In Drosophila SAM-Scm-like-4MBT protein (known as dSfmbt) is a member of Pho repressive complex (PhoRC). Additionally to dSfmbt, the PhoRC complex includes Pho or Pho-like proteins. This complex is responsible for HOX (Homeobox) gene silencing: Pho or Pho-like proteins bind DNA and dSmbt binds methylated histones. dSmbt can interact with mono- and di-methylated histones H3 and H4 (however this activity has been shown for the MBT repeats, while exact function of the SAM domain is unclear). Besides interaction with histones, dSmbt can interact with Scm (a member of PRC complex), but this interaction also seems to be SAM domain independent. Length = 67

>gnl|CDD|188933 cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fungal subfamily

 Score = 47.2 bits (113), Expect = 8e-08
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
           W    V +++  L  C +Y++ F    I G  L+ L  + L E    K+G  ++++  I 
Sbjct: 1   WDEEFVEEWLNEL-NCGQYLDIFEKNLITGDLLLELDKEALKELGITKVGDRIRLLRAIK 59

Query: 184 SMR 186
           S+R
Sbjct: 60  SLR 62

SAM (sterile alpha motif) domain of Ste11 subfamily is a protein-protein interaction domain. Proteins of this subfamily have SAM domain at the N-terminus and protein kinase domain at the C-terminus. They participate in regulation of mating pheromone response, invasive growth and high osmolarity growth response. MAP triple kinase Ste11 from S.cerevisia is known to interact with Ste20 kinase and Ste50 regulator. These kinases are able to form homodimers interacting through their SAM domains as well as heterodimers or heterogenous complexes when either SAM domain of monomeric or homodimeric form of Ste11 interacts with Ste50 regulator. Length = 62

>gnl|CDD|188904 cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKI 182
           W+  +VC ++R++ G  +YVE F    IDG+ L+ L  + L + + ++ LG   KI+ KI
Sbjct: 5   WSEEDVCTWLRSI-GLEQYVEVFRANNIDGKELLNLTKESLSKDLKIESLGHRNKILRKI 63

Query: 183 DSMRQ 187
           + ++ 
Sbjct: 64  EELKM 68

SAM (sterile alpha motif) domain of WDSUB1 subfamily proteins is a putative protein-protein interaction domain. Proteins of this group contain multiple domains: SAM, one or more WD40 repeats and U-box (derived version of the RING-finger domain). Apparently the WDSUB1 subfamily proteins participate in protein degradation through ubiquitination, since U-box domain are known as a member of E3 ubiquitin ligase family, while SAM and WD40 domains most probably are responsible for an E2 ubiquitin-conjugating enzyme binding and a target protein binding. Length = 72

>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif)

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAK 181
           W+  +V +++R++ G  +Y ++F  Q I G + L+ L  + L   + +  +G   KI+ K
Sbjct: 4   WSPEDVAEWLRSI-GLPQYADNFRDQGITGGELLLRLTEEDLKA-LGITSVGHRKKILKK 61

Query: 182 IDSMR 186
           I  ++
Sbjct: 62  IQRLK 66

Length = 66

>gnl|CDD|188927 cd09528, SAM_Samd9_Samd9L, SAM domain of Samd9/Samd9L subfamily

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIV 179
            WT   V  ++       +Y E    +E+ G  L  L  + L++ M +  GPAL I+
Sbjct: 2   DWTKEHVKQWLIEDLIDKKYAEILYEEEVTGAVLKELTEEDLVD-MGLPHGPALLII 57

SAM (sterile alpha motif) domain of Samd9/Samd9L subfamily is a putative protein-protein interaction domain. SAM is a widespread domain in signaling proteins. Samd9 is a tumor suppressor gene. It is involved in death signaling of malignant glioblastoma. Samd9 suppression blocks cancer cell death induced by HVJ-E or IFN-beta treatment. Deleterious mutations in Samd9 lead to normophosphatemic familial tumoral calcinosis, a cutaneous disorder characterized by cutaneous calcification or ossification. Length = 64

>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif )

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 128 EVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
           +V +++ +L G  +Y + F   EIDG AL+LL  + L E      G   KI+  I 
Sbjct: 1   DVAEWLESL-GLEQYADLFRKNEIDGDALLLLTDEDLKELGITSPGHRKKILRAIQ 55

SAM (Sterile Alpha Motif) domain is a module consisting of approximately 70 amino acids. This domain is found in the Fungi/Metazoa group and in a restricted number of bacteria. Proteins with SAM domains are represented by a wide variety of domain architectures and have different intracellular localization, including nucleus, cytoplasm and membranes. SAM domains have diverse functions. They can interact with proteins, RNAs and membrane lipids, contain site of phosphorylation and/or kinase docking site, and play a role in protein homo and hetero dimerization/oligomerization in processes ranging from signal transduction to regulation of transcription. Mutations in SAM domains have been linked to several diseases. Length = 56

>gnl|CDD|188934 cd09535, SAM_BOI-like_fungal, SAM domain of BOI-like fungal subfamily

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLME--AMSMKLGPALKIVAK 181
           W+  +V +++ +        E F   EI G  L+ L  + L E    S   G   K+  +
Sbjct: 3   WSPEQVAEWLLSAGFDDSVCEKFRENEITGDILLELDLEDLKELDIGSF--GKRFKLWNE 60

Query: 182 IDSMR 186
           I S+R
Sbjct: 61  IKSLR 65

SAM (sterile alpha motif) domain of BOI-like fungal subfamily is a potential protein-protein interaction domain. Proteins of this subfamily are apparently scaffold proteins, since most contain SH3 and PH domains, which are also protein-protein interaction domains, in addition to SAM domain. BOI-like proteins participate in cell cycle regulation. In particular BOI1 and BOI2 proteins of budding yeast S.cerevisiae are involved in bud formation, and POB1 protein of fission yeast S.pombe plays a role in cell elongation and separation. Among binding partners of BOI-like fungal subfamily members are such proteins as Bem1 and Cdc42 (they are known to be involved in cell polarization and bud formation). Length = 65

>gnl|CDD|188929 cd09530, SAM_Samd14, SAM domain of Samd14 subfamily

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHL 164
           L W   +V ++I  L G  +Y E F    IDG+ L+L+ A  L
Sbjct: 1   LSWDTEDVAEWIEGL-GFPQYRECFTTNFIDGRKLILVDASTL 42

SAM (sterile alpha motif) domain of SamD14 (or FAM15A) subfamily is a putative protein-protein interaction domain. SAM is widespread domain in proteins involved in signal transduction and regulation. In many cases SAM mediates homodimerization/oligomerization. The exact function of proteins belonging to this subfamily is unknown. Length = 67

>gnl|CDD|188911 cd09512, SAM_Neurabin-like, SAM domain of SAM_Neurabin-like subfamily

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHL 164
           W+V +VC ++  L G  +Y+ +F    IDGQ L+ L +  L
Sbjct: 7   WSVQQVCQWLMGL-GLEQYIPEFTANNIDGQQLLQLDSSKL 46

SAM (sterile alpha motif) domain of Neurabin-like (Neural actin-binding) subfamily is a putative protein-protein interaction domain. This group currently includes the SAM domains of neurobin-I, SAMD14 and neurobin-I/SAMD14-like proteins. Most are multidomain proteins and in addition to SAM domain they contain other protein-binding domains such as PDZ and actin-binding domains. Members of this subfamily participate in signal transduction. Neurabin-I is involved in the regulation of Ca signaling intensity in alpha-adrenergic receptors; it forms a functional pair of opposing regulators with neurabin-II. Neurabins are expressed almost exclusively in neuronal cells. They are known to interact with protein phosphatase 1 and inhibit its activity; they also can bind actin filaments; however, the exact role of the SAM domain is unclear, since SAM doesn't participate in these interactions. Length = 70

>gnl|CDD|188906 cd09507, SAM_DGK-delta-eta, SAM domain of diacylglycerol kinase delta and eta subunits

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
            WT  EV  ++ +L    EY + FA  +I G  L+ L+ + L +    K+G   +I+  I
Sbjct: 4   NWTTEEVGAWLESL-QLGEYRDIFARNDIRGSELLHLERRDLKDLGITKVGHVKRILQAI 62

Query: 183 DSM 185
             +
Sbjct: 63  KDL 65

SAM (sterile alpha motif) domain of DGK-eta-delta subfamily proteins is a protein-protein interaction domain. Proteins of this subfamily are multidomain diacylglycerol kinases with a SAM domain located at the C-terminus. DGK proteins participate in signal transduction. They regulate the level of second messengers such as diacylglycerol and phosphatidic acid. The SAM domain of DGK proteins can form high molecular weight homooligomers through head-to-tail interactions as well as heterooligomers between the SAM domains of DGK delta and eta proteins. The oligomerization plays a role in the regulation of DGK intracellular localization. Length = 65

>gnl|CDD|188909 cd09510, SAM_aveugle-like, SAM domain of aveugle-like subfamily

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 124 WTVTEVCDFI-RNLP-GCAEYVEDFAMQEIDGQALMLLQAKHL 164
           W+V +VC ++ R+ P     Y E F   +I G+AL+ L    L
Sbjct: 6   WSVQDVCKWLKRHCPDYYLLYAELFLQHDITGRALLRLNDNKL 48

SAM (sterile alpha motif) domain of SAM_aveugle-like subfamily is a protein-protein interaction domain. In Drosophila, the aveugle (AVE) protein (also known as HYP (Hyphen)) is involved in normal photoreceptor differentiation, and required for epidermal growth factor receptor (EGFR) signaling between ras and raf genes during eye development and wing vein formation. SAM domain of the HYP(AVE) protein interacts with SAM domain of CNK, the multidomain scaffold protein connector enhancer of kinase suppressor of ras. CNK/HYP(AVE) complex interacts with KSR (kinase suppressor of Ras) protein. This interaction leads to stimulation of Ras-dependent Raf activation. This subfamily also includes vertebrate AVE homologs - Samd10 and Samd12 proteins. Their exact function is unknown, but they may play a role in signal transduction during embryogenesis. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	99.69
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	99.61
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	99.56
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	99.56
KOG4375|consensus	272		98.88
KOG1170|consensus	1099		98.75
KOG3678|consensus	832		98.73
KOG4374|consensus	216		98.6
PF09235	75	Ste50p-SAM: Ste50p, sterile alpha motif; InterPro:	98.37
PF02198	84	SAM_PNT: Sterile alpha motif (SAM)/Pointed domain;	97.97
KOG4384|consensus	361		97.8
smart00251	82	SAM_PNT SAM / Pointed domain. A subfamily of the S	97.77
cd08203	66	SAM_PNT Sterile alpha motif (SAM)/Pointed domain.	97.49
cd08532	76	SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointe	97.47
KOG1899|consensus	861		97.41
cd08757	68	SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed doma	97.36
cd08540	75	SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed doma	97.27
cd08533	71	SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed	97.24
cd08541	91	SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed do	97.2
PF09597	57	IGR: IGR protein motif; InterPro: IPR019083 This e	97.12
KOG1899|consensus	861		97.1
cd08531	75	SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointe	97.04
cd08538	78	SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Point	97.04
KOG4403|consensus	575		96.94
cd08539	74	SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Point	96.91
cd08535	68	SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed	96.91
cd08534	89	SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Point	96.91
cd08537	78	SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Point	96.81
cd08542	88	SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed do	96.76
cd08543	89	SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed do	96.75
KOG1738|consensus	638		96.48
cd08536	66	SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed doma	96.22
KOG1945|consensus	377		95.28
KOG0196|consensus	996		94.13
KOG3930|consensus	389		93.84
KOG0249|consensus	916		86.14

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.69  E-value=6.4e-17  Score=112.07  Aligned_cols=63  Identities=32%  Similarity=0.679  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHH
Q psy2001         122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMR  186 (202)
Q Consensus       122 ~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr  186 (202)
                      +.|++++|++||.++ |+++|++.|+++.|||+.|+.|+++||. .||| ++|+|.||+++|++||
T Consensus         1 s~W~~~~V~~WL~~~-~l~~y~~~F~~~~i~g~~L~~lt~~dL~-~lgi~~~ghr~ki~~~i~~Lk   64 (64)
T PF00536_consen    1 SEWSVEDVSEWLKSL-GLEQYAENFEKNYIDGEDLLSLTEEDLE-ELGITKLGHRKKILRAIQKLK   64 (64)
T ss_dssp             GGTSHHHHHHHHHHT-TGGGGHHHHHHTTSSHHHHTTSCHHHHH-HTT-SSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHC-CCHHHHHHHHcCCchHHHHHhcCHHHHH-HcCCCCHHHHHHHHHHHHHhC
Confidence            369999999999998 9999999999999999999999999996 5999 5699999999999997

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.61  E-value=1e-15  Score=106.42  Aligned_cols=64  Identities=25%  Similarity=0.623  Sum_probs=61.1

Q ss_pred             CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHH
Q psy2001         121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMR  186 (202)
Q Consensus       121 V~~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr  186 (202)
                      |..||.++|++||.++ |+.+|++.|++++||| ..|+.|++++|. .||| ..|+|.||+++|++||
T Consensus         1 v~~w~~~~v~~WL~~~-gl~~y~~~f~~~~i~g~~~L~~l~~~~L~-~lGI~~~~~r~kll~~i~~Lk   66 (66)
T PF07647_consen    1 VSTWSPEDVAEWLKSL-GLEQYADNFRENGIDGLEDLLQLTEEDLK-ELGITNLGHRRKLLSAIQELK   66 (66)
T ss_dssp             GGGHCHHHHHHHHHHT-TCGGGHHHHHHTTCSHHHHHTTSCHHHHH-HTTTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHC-CcHHHHHHHHHcCCcHHHHHhhCCHHHHH-HcCCCCHHHHHHHHHHHHHcC
Confidence            4679999999999998 9999999999999999 999999999995 8999 8999999999999997

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>smart00454 SAM Sterile alpha motif

Probab=99.56  E-value=1.4e-14  Score=98.52  Aligned_cols=65  Identities=29%  Similarity=0.647  Sum_probs=60.7

Q ss_pred             CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCC-HHHHHHhhCC-CcchHHHHHHHHHHHHH
Q psy2001         121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQ-AKHLMEAMSM-KLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       121 V~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLt-eedL~k~LGI-KLGprlKI~~~Ik~Lr~  187 (202)
                      +..|++++|++||..+ ||.+|++.|++++|||..|+.++ .++| +.||| ..|+|.+|+..|+.||.
T Consensus         1 ~~~w~~~~v~~wL~~~-g~~~y~~~f~~~~i~g~~ll~~~~~~~l-~~lgi~~~~~r~~ll~~i~~l~~   67 (68)
T smart00454        1 VSQWSPESVADWLESI-GLEQYADNFRKNGIDGALLLLLTSEEDL-KELGITKLGHRKKILKAIQKLKD   67 (68)
T ss_pred             CCCCCHHHHHHHHHHC-ChHHHHHHHHHCCCCHHHHHhcChHHHH-HHcCCCcHHHHHHHHHHHHHHHh
Confidence            3679999999999998 99999999999999999999999 7777 68999 89999999999999985

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

>cd00166 SAM Sterile alpha motif

Probab=99.56  E-value=9.4e-15  Score=98.71  Aligned_cols=62  Identities=27%  Similarity=0.640  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHH
Q psy2001         123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMR  186 (202)
Q Consensus       123 ~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr  186 (202)
                      .||+++|++||.++ |+++|++.|++++|||..|+.|++++|. .|||+ .|+|.+|+.+|+.|+
T Consensus         1 ~w~~~~V~~wL~~~-~~~~y~~~f~~~~i~g~~L~~l~~~dL~-~lgi~~~g~r~~i~~~i~~l~   63 (63)
T cd00166           1 NWSPEDVAEWLESL-GLGQYADNFRENGIDGDLLLLLTEEDLK-ELGITLPGHRKKILKAIQKLK   63 (63)
T ss_pred             CCCHHHHHHHHHHc-ChHHHHHHHHHcCCCHHHHhHCCHHHHH-HcCCCCHHHHHHHHHHHHHcC
Confidence            59999999999997 9999999999999999999999999996 99995 599999999999875

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>KOG4375|consensus

Probab=98.88  E-value=1e-09  Score=97.70  Aligned_cols=65  Identities=25%  Similarity=0.478  Sum_probs=61.2

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHH
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSM  185 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~L  185 (202)
                      +-+-.||+.||.+||+++ .+.+|-+.|.+|+|||..|..|+++|++ .+|+ .+|+|..|-++++.|
T Consensus       205 Kpl~~Wsk~DV~dWLssl-~L~E~~~aF~d~eIdG~hLp~l~k~df~-~LGVTRVgHRmnIerALr~l  270 (272)
T KOG4375|consen  205 KPLQRWSKIDVNDWLSSL-HLIEYDDAFHDIEIDGKHLPLLRKLDFR-GLGVTRVGHRMNIERALRQL  270 (272)
T ss_pred             cccceeccccHHHHHHhh-hhhhcchhhhhcccccchhhhcchhhhh-cccchhhhhHHHHHHHHHHh
Confidence            557789999999999998 8999999999999999999999999996 7999 899999999999887

>KOG1170|consensus

Probab=98.75  E-value=5.1e-09  Score=104.76  Aligned_cols=70  Identities=29%  Similarity=0.635  Sum_probs=64.8

Q ss_pred             CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..++..|++++|+.||+.+ ++.+|.+.|++|+|.|.-||-|...|| +.+|+ |+|+.++|+.+|++||...
T Consensus       992 ~a~~~~w~seeV~awLe~~-~LsEy~d~f~kndirGseLl~L~rrDL-kdlgvtkVGhvkril~aIkdl~~~~ 1062 (1099)
T KOG1170|consen  992 FANIPYWTSEEVCAWLESI-GLSEYKDTFRKNDIRGSELLHLERRDL-KDLGVTKVGHVKRILSAIKDLRAQN 1062 (1099)
T ss_pred             cccCccccHHHHHHHHhcc-ccchhhhhhhccCcccceeeecCcccc-cccchhhhHHHHHHHHHHHHHHhcc
Confidence            4578999999999999998 999999999999999999999999999 57888 9999999999999996554

>KOG3678|consensus

Probab=98.73  E-value=1.6e-08  Score=97.65  Aligned_cols=74  Identities=27%  Similarity=0.500  Sum_probs=67.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcc-hHHHHHHHHHHHHHHhc
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLG-PALKIVAKIDSMRQAAE  190 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLG-prlKI~~~Ik~Lr~~~~  190 (202)
                      .....|-.|++.||..||++| ||++|++.|+++.+||.-||-||++||..++||+-| +|+++++.+..|+....
T Consensus       457 ~l~~qVPgWt~AdVQ~WvkkI-GFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv~Ad  531 (832)
T KOG3678|consen  457 KLAQQVPGWTCADVQYWVKKI-GFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAAD  531 (832)
T ss_pred             hhhccCCCcchHHHHHHHHHh-CHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhc
Confidence            345678889999999999998 999999999999999999999999999989999766 78999999999988764

>KOG4374|consensus

Probab=98.60  E-value=1.6e-08  Score=87.93  Aligned_cols=63  Identities=29%  Similarity=0.412  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       126 vedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      .++|-.||..+ ||+.|...|..++||..+|+.||+++| +.||| .+|+|.||+++|.++|....
T Consensus       151 ~~~vl~~L~~l-glg~y~~~f~~~evd~~~l~~lte~dl-k~~gi~~~GpRkKi~~A~~~~r~~~s  214 (216)
T KOG4374|consen  151 TEGVLMELGIL-GLGAYWKMFEAIEVDMDNLRLLTEEDL-KDMGINSVGPRKKILCAIGKLRRSFS  214 (216)
T ss_pred             cchHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcccchh-hhhcccccCcchhhhhhhhccccccc
Confidence            57899999997 999999999999999999999999999 58999 99999999999999987543

>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold

Probab=98.37  E-value=4.2e-07  Score=67.68  Aligned_cols=69  Identities=20%  Similarity=0.281  Sum_probs=51.9

Q ss_pred             CCCCCCHHHHHHHHHhCCCC---hHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         120 NPLKWTVTEVCDFIRNLPGC---AEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       120 nV~~WTvedV~ewL~sl~Gc---~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      +...||+++|+.|..+..+.   ......|++|+|+|..|..|+-+|=.+..+--+..|+|+--.|++|+..
T Consensus         2 ~~~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLtl~DCKeLc~~d~~~Aik~Ki~iNkL~dt   73 (75)
T PF09235_consen    2 DFSNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELTLEDCKELCDNDLKLAIKLKILINKLRDT   73 (75)
T ss_dssp             -TTT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHHHHHHHHCTTS-HHHHHHHHHHHHHHHH-
T ss_pred             ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhccHHHHHHHcCccHHHHHHHHHHHHhhhhc
Confidence            57889999999999443233   3377779999999999999999999766776888899999999999864

It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.

>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=97.97  E-value=4.9e-06  Score=61.78  Aligned_cols=71  Identities=15%  Similarity=0.252  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..+.++..||.+||.+||.-. ..+.-..-.|..-.|||..|..|++++++...+.  +..-.|+..++.||..
T Consensus        12 ~~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~lt~e~F~~~~~~--~~G~~Ly~~L~~Lk~~   83 (84)
T PF02198_consen   12 WLPKDPRLWTKEDVLQWLRWVVREFDLPAIDFSRFNMNGRELCSLTKEDFRRRFPS--GYGDILYSHLQLLKKC   83 (84)
T ss_dssp             TSCSSGGG--HHHHHHHHHHHHHHTT-SSCHGGGGTS-HHHHHHSHHHHHHHHSTH--TTHHHHHHHHHHHHHH
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHhcCCCcCchhccCCCHHHHHHcCHHHHHHHcCC--CcHHHHHHHHHHHHHc
Confidence            457799999999999999532 1121112235555899999999999999755443  6778899999999864

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....

>KOG4384|consensus

Probab=97.80  E-value=4e-05  Score=71.15  Aligned_cols=74  Identities=14%  Similarity=0.270  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccCCCCCCCC
Q psy2001         124 WTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGAAGAPPPA  199 (202)
Q Consensus       124 WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~~~~~~~~  199 (202)
                      --..-|++||..| ++++|.+.|.+|.-| =+.+-.++++||. ++|| ..++|.||+.+|+.|+....+..+.....
T Consensus       213 ~~~~~~~ewL~~i-~le~y~~~~L~nGYd~le~~k~i~e~dL~-~lgI~nP~Hr~kLL~av~~~~e~d~~~~~~~~~e  288 (361)
T KOG4384|consen  213 PHPKSLEEWLRRI-GLEEYIETLLENGYDTLEDLKDITEEDLE-ELGIDNPDHRKKLLSAVELLKEIDSGSEQVGENE  288 (361)
T ss_pred             CCchHHHHHHHHh-hHHHHHHHHHHcchHHHHHHHhccHHHHH-HhCCCCHHHHHHHHHHHHHHHhccccccccCCCc
Confidence            3467799999998 999999999999988 7889999999995 8999 89999999999999999987777766554

>smart00251 SAM_PNT SAM / Pointed domain

Probab=97.77  E-value=3.2e-05  Score=57.87  Aligned_cols=66  Identities=15%  Similarity=0.284  Sum_probs=49.9

Q ss_pred             CCCCCCCCCHHHHHHHHHhC-C--CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001         117 SLPNPLKWTVTEVCDFIRNL-P--GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       117 ~~snV~~WTvedV~ewL~sl-~--Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~  187 (202)
                      .+.++..||.++|..||.-. +  ++..  -.|..-+|||++|..|+++|++...+   +..-.|+..++.||.
T Consensus        13 ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~--~~~~~f~m~G~~Lc~ls~edF~~~~p---~~GdiL~~hL~~Lk~   81 (82)
T smart00251       13 IPADPQLWTEDHVLEWLEWAVKEFSLSP--IDFSKFDMSGKELCSMSKEEFLERAP---FGGDILWSHLQILRK   81 (82)
T ss_pred             CCCChhhCCHHHHHHHHHHHHHhcCCCC--CCcccCCCCHHHHHcCCHHHHHHHcC---CchHHHHHHHHHHHh
Confidence            46789999999999999543 1  2221  11333389999999999999986665   566788999999985

A subfamily of the SAM domain

>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain

Probab=97.49  E-value=0.00027  Score=50.69  Aligned_cols=61  Identities=18%  Similarity=0.340  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHHHHHHhC---CCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001         120 NPLKWTVTEVCDFIRNL---PGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR  186 (202)
Q Consensus       120 nV~~WTvedV~ewL~sl---~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr  186 (202)
                      ++..||.++|..||.-.   .++.. -...|   .+||+.|..|+++++....+- .|  -.|+..+..||
T Consensus         1 dP~~Wt~~~V~~Wl~w~~~~f~L~~~~~~~F---~m~G~~Lc~ls~edF~~~~p~-~G--diL~~hL~~l~   65 (66)
T cd08203           1 DPRLWTKEHVLQWLEWAVKEFSLPPIDFSKF---NMNGKELCLLTKEDFLRRAPS-GG--DILYEHLQLLR   65 (66)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCCCChhhc---CCCHHHHHhCCHHHHHHHcCC-cH--HHHHHHHHHHh
Confidence            47889999999999432   13433 23444   999999999999999765553 44  45677777766

Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti

>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor

Probab=97.47  E-value=0.00057  Score=50.85  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=50.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+.++..||.++|..||.-.   .++..   .+..=.|||++|-.|+++|+.....- .|+  .|+..++-||+..
T Consensus         5 ~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~edF~~r~p~-~Gd--iL~~hL~~lk~a~   75 (76)
T cd08532           5 GISPDPYQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEEDFRRRAPQ-GGD--TLHAQLDIWKSAA   75 (76)
T ss_pred             CCCCChhhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHHHHHHHcCC-chh--HHHHHHHHHHHhh
Confidence            457899999999999999432   24443   34455999999999999999765443 554  5788888888753

SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.

>KOG1899|consensus

Probab=97.41  E-value=0.00028  Score=70.09  Aligned_cols=73  Identities=12%  Similarity=0.318  Sum_probs=64.8

Q ss_pred             CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHHHHhcc
Q psy2001         118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMRQAAEG  191 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr~~~~~  191 (202)
                      +.....|+.++||+||..+ |+++|..--++.--.|..||..+..|+.+++||| -=+|+||.-+|+.|-.+...
T Consensus       544 ~~pfa~W~~EqvcnWlae~-Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeLnIKhplHRKkl~lal~ai~~keee  617 (861)
T KOG1899|consen  544 PLPFADWRSEQVCNWLAEI-GLGQYMNEVRRWVRSGRTFLTASPQDYEKELNIKHPLHRKKLALALRAIEEKEEE  617 (861)
T ss_pred             CCchhhccHHHHHHHHHHh-chHHHHHHHHHHHhcCchhhcCCHHHHHHHhccCCchHHHHHHHHHHHhcccccc
Confidence            3447889999999999998 9999999888888899999999999999999996 58999999999998766543

>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators

Probab=97.36  E-value=0.00037  Score=50.46  Aligned_cols=64  Identities=22%  Similarity=0.389  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001         120 NPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR  186 (202)
Q Consensus       120 nV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr  186 (202)
                      ++..||.++|..||.-.   .++....-.|..-.|||++|..|++++++...+. .|+  -|+..+++|+
T Consensus         1 dP~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~~p~-~Gd--iL~~~l~~~~   67 (68)
T cd08757           1 HPQYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFREAAGS-YGS--LLYAELQRLT   67 (68)
T ss_pred             CHhhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHHcCC-cHH--HHHHHHHHHh
Confidence            46789999999999532   2333210123333899999999999999865553 555  4567766654

SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.

>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor

Probab=97.27  E-value=0.0008  Score=50.00  Aligned_cols=67  Identities=18%  Similarity=0.310  Sum_probs=49.0

Q ss_pred             CCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      +.+++.||.++|..||.=.   .++... ...|  ++|||++|-.|+++|+....+--.|  -.|+.+++.||+.
T Consensus         2 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~~~~~~F--~~m~Gk~LC~LskedF~~~ap~~~G--diL~~HL~~Lr~~   72 (75)
T cd08540           2 PADPTLWSTDHVRQWLEWAVKEYGLPDVDVLLF--QNIDGKELCKMTKDDFQRLTPSYNA--DILLSHLHYLRET   72 (75)
T ss_pred             CCChhhcCHHHHHHHHHHHHHHhCCCCCCcccc--cCCCHHHHHhCCHHHHHHHcCCCCc--hHHHHHHHHHHhC
Confidence            5789999999999999422   133321 2333  4699999999999999765544455  5688999999874

SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po

>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family

Probab=97.24  E-value=0.00074  Score=49.71  Aligned_cols=66  Identities=17%  Similarity=0.279  Sum_probs=46.9

Q ss_pred             CCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      +.++..||.++|..||.=.   -++.+. ...|   .|||++|-.|+++++....+--.|+  -|+..++.||..
T Consensus         1 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F---~m~Gk~LC~ls~edF~~~~p~~~Gd--IL~~hL~~L~k~   70 (71)
T cd08533           1 PKDPRLWTETHVRQWLLWAVNEFSLEGVNFQKF---CMSGRDLCALGKERFLELAPDFVGD--ILWEHLEILQKE   70 (71)
T ss_pred             CcChhhCCHHHHHHHHHHHHHHcCCCCCCcccC---CCCHHHHHcCCHHHHHHHcCCCcch--HHHHHHHHHHhc
Confidence            4678999999999999422   133321 2334   8999999999999997554433455  468888888763

SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.

>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator

Probab=97.20  E-value=0.0011  Score=51.10  Aligned_cols=70  Identities=20%  Similarity=0.346  Sum_probs=51.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+.++..||.++|..||.=.   .++.+. ...|  ++|||++|-.|+++|+.+..+--.|  --|+.++..||+..
T Consensus        12 ~IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F--~~m~Gk~LC~LskedF~~~~p~~~g--diLw~HL~~Lr~~~   85 (91)
T cd08541          12 IVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFF--QNMDGKELCKMNKEDFLRATSLYNT--EVLLSHLSYLRESS   85 (91)
T ss_pred             eCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhc--cCCCHHHHHhCCHHHHHHHcCCCcc--HHHHHHHHHHHhCc
Confidence            567899999999999999422   144321 2334  2699999999999999764433344  56899999999854

SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.

>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif

Probab=97.12  E-value=0.00057  Score=48.60  Aligned_cols=55  Identities=24%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             HHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001         129 VCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       129 V~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~  187 (202)
                      |..||..| ++|++|++.|-. +.  +.|+.++...| +++||++-.|.-|++...+.|+
T Consensus         1 V~tFL~~IGR~~~~~~~kf~~-~w--~~lf~~~s~~L-K~~GIp~r~RryiL~~~ek~r~   56 (57)
T PF09597_consen    1 VETFLKLIGRGCEEHAEKFES-DW--EKLFTTSSKQL-KELGIPVRQRRYILRWREKYRQ   56 (57)
T ss_pred             CHHHHHHHcccHHHHHHHHHH-HH--HHHHhcCHHHH-HHCCCCHHHHHHHHHHHHHHhC
Confidence            67899988 679999999944 34  89999999999 6899999999999999999885

Its function is unknown.

>KOG1899|consensus

Probab=97.10  E-value=0.00068  Score=67.46  Aligned_cols=73  Identities=19%  Similarity=0.323  Sum_probs=64.0

Q ss_pred             CCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccCCC
Q psy2001         120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGAAG  194 (202)
Q Consensus       120 nV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~~~  194 (202)
                      +-..|++..|..||-.| |+.+|-+.|-++.|||..|..||.+||. .|.+ ..=+-+-|.++|.-||.....++|
T Consensus       619 ka~klDv~wvlRWLDDI-GLPQYKdqF~E~rVDgrmL~ylTvnDll-~lkVvs~lHhaSlkraIqvLr~n~fnpnc  692 (861)
T KOG1899|consen  619 KANKLDVHWVLRWLDDI-GLPQYKDQFAENRVDGRMLHYLTVNDLL-ELKVVSALHHASLKRAIQVLRKNDFNPNC  692 (861)
T ss_pred             cccchhHHHHHHHHHhc-CChhhHHHHhhhccchhhHhhhhHhhhh-HHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence            56789999999999998 9999999999999999999999999997 5555 667777889999999887765555

>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors

Probab=97.04  E-value=0.0016  Score=48.33  Aligned_cols=67  Identities=22%  Similarity=0.383  Sum_probs=47.3

Q ss_pred             CCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      +.++..||.++|..||.-.   .++.+. ...|  +.|||++|-.|+++|+....+  -...-.|+..+..||..
T Consensus         2 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F--~~m~Gk~LC~lt~edF~~~~~--~~~GdiL~~hL~~Lr~~   72 (75)
T cd08531           2 PADPTLWTREHVRQWLEWAVKEYGLQDVDVSRF--QNIDGKELCKMTKEDFLRLTS--AYNADVLLSHLSYLRES   72 (75)
T ss_pred             CCChhhcCHHHHHHHHHHHHHHcCCCCCChhhc--cCCChHHHHcCCHHHHHHHcC--CCcchHHHHHHHHHHhC
Confidence            5689999999999999432   133221 1223  489999999999999964332  22335688999999874

SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.

>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators

Probab=97.04  E-value=0.0018  Score=48.68  Aligned_cols=68  Identities=18%  Similarity=0.281  Sum_probs=49.3

Q ss_pred             CCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..++..||.++|.+||.-.   .++....-.|..=+|||+.|=.|+.++++...+. .|+-  |+..+..+|..
T Consensus         4 ~~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~~~p~-~Gdv--Ly~~lq~~~~~   74 (78)
T cd08538           4 SVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGI-CGEY--LYFILQNIRTQ   74 (78)
T ss_pred             CCCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHHHccc-chHH--HHHHHHHHHhc
Confidence            4688999999999999432   2443321234444999999999999999876653 6764  67788887764

SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.

>KOG4403|consensus

Probab=96.94  E-value=0.00046  Score=66.22  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=50.1

Q ss_pred             CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR  186 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr  186 (202)
                      .+.+.+||+|++.+||.+.-.+.+|++.|+.+.|+|.+|..|-.... ..+|--+|-.-++.+.--+|+
T Consensus       129 ~Sev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~-~f~~~~Lgikd~~hrQKlqLk  196 (575)
T KOG4403|consen  129 ESEVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNS-DFLGKVLGIKDRSHRQKLQLK  196 (575)
T ss_pred             hhhhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCch-HHhhhhhccCchHHHHhhhhh
Confidence            36789999999999997765789999999999999999998876555 344444444444444333333

>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators

Probab=96.91  E-value=0.002  Score=48.08  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=50.0

Q ss_pred             CCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~  187 (202)
                      ..++..||..+|.+||.-.   +.+.-..--|.+-.+||++|-+|+.+.++...+ .+|+  -||..+..||.
T Consensus         2 ~~~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~~~~p-~~Gd--iLy~~l~~~~~   71 (74)
T cd08539           2 EIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAG-TAGQ--LLYSNLQHLKW   71 (74)
T ss_pred             CCChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHhhcCC-chHH--HHHHHHHHHhc
Confidence            4688999999999999543   344444345666699999999999999864333 3565  46888888875

SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.

>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein

Probab=96.91  E-value=0.0011  Score=48.29  Aligned_cols=62  Identities=19%  Similarity=0.352  Sum_probs=44.5

Q ss_pred             CCCCCCHHHHHHHHHhC-C--CChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001         120 NPLKWTVTEVCDFIRNL-P--GCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       120 nV~~WTvedV~ewL~sl-~--Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~  187 (202)
                      ++..||.++|..||.-. +  ++... ...|   .+||++|-.|+++++..... ..|  -.|+..+..||.
T Consensus         2 DP~~Wt~~~V~~WL~wa~~ef~L~~i~~~~F---~mnGk~LC~ls~edF~~r~p-~~G--diL~~hL~~L~~   67 (68)
T cd08535           2 QPRYWSRDDVLQWLRWAENEFSLPPIDSNTF---EMNGKALCLLTKEDFRYRSP-HSG--DVLYELLQHLLK   67 (68)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCCCChhcc---CCCHHHHhcCCHHHHhhhCC-Cch--HHHHHHHHHHHh
Confidence            67899999999999432 1  33221 2334   79999999999999975433 244  467888888875

SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.

>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain

Probab=96.91  E-value=0.0023  Score=49.06  Aligned_cols=69  Identities=16%  Similarity=0.344  Sum_probs=50.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+.++..||.++|..||.-.   .++... ...|   .|||++|-.|+++|+.....  .+.--.|+.+++.||+..
T Consensus        14 ~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F---~m~Gk~LC~Ls~edF~~r~p--~~~GdiL~~hLe~Lrk~~   86 (89)
T cd08534          14 KIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDW---NITGRELCSLTQEEFFQRVP--KDPGDIFWTHLELLRKCK   86 (89)
T ss_pred             CCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhc---CCCHHHHhcCCHHHHHHHcC--CCccHHHHHHHHHHHHcc
Confidence            457899999999999999432   133321 3344   79999999999999975443  334556889999998754

SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.

>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators

Probab=96.81  E-value=0.0024  Score=48.14  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=51.1

Q ss_pred             CCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..++..||..+|.+||.-.   +.+.-..--|.+-++||.+|-.|+.++++...|- +|+  -|+..+.+|+..
T Consensus         7 ~~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p-~Gd--iLy~~L~~l~~~   77 (78)
T cd08537           7 GEEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALDQMRLVFGP-LGD--QLYAQLRELTSS   77 (78)
T ss_pred             CCCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHHHHHHHcCC-hHH--HHHHHHHHHhcc
Confidence            5789999999999999543   1222222335566999999999999999766665 887  468888888764

SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.

>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1

Probab=96.76  E-value=0.0033  Score=48.21  Aligned_cols=68  Identities=19%  Similarity=0.296  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..+.+++.||.++|..||.=.   -++... ...|   .|||++|-.|+.+++.....--.|+  -|+.+++.||..
T Consensus        14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F---~m~Gk~LC~Ls~edF~~~~P~~~Gd--IL~~HL~~L~k~   85 (88)
T cd08542          14 GIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF---CMNGAALCALGKECFLELAPDFVGD--ILWEHLEILQKE   85 (88)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccC---CCCHHHHHcCCHHHHHhHcCCCccH--HHHHHHHHHHHh
Confidence            557899999999999999321   133321 2444   5999999999999997544222454  578888888875

SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.

>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2

Probab=96.75  E-value=0.0038  Score=47.99  Aligned_cols=69  Identities=20%  Similarity=0.350  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+.++..||.++|..||.=.   -++... ...|   +|||++|-.|+++++.....--.|+  -|+.++..|+...
T Consensus        14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F---~m~Gk~LC~Ls~edF~~~ap~~~Gd--IL~~HL~~l~k~~   86 (89)
T cd08543          14 GIPKNPWLWTEQQVCQWLLWATNEFSLVNVNFQQF---GMNGQELCNLGKERFLELAPDFVGD--ILWEHLEQMIKEN   86 (89)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccC---CCChHHHHcCCHHHHHhHcCCCcch--HHHHHHHHHHHHH
Confidence            457899999999999999321   133331 3444   6999999999999997544322454  5788888887654

SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.

>KOG1738|consensus

Probab=96.48  E-value=0.0031  Score=62.43  Aligned_cols=70  Identities=23%  Similarity=0.422  Sum_probs=61.3

Q ss_pred             CCCCCCCHHHHHHHHHhCCC-ChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         119 PNPLKWTVTEVCDFIRNLPG-CAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~G-c~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      .+|..||..+|++|++-+.. ..+|...|.++.|.|..|+.++..+|. .||+ .+|+...++.++..|..-.
T Consensus         2 ~~v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le-~lg~rrig~qeli~~av~~L~~l~   73 (638)
T KOG1738|consen    2 EPVETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLE-TLGVRRIGHQELILEAVEQLWALK   73 (638)
T ss_pred             CcccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence            46889999999999987633 367999999999999999999999995 7888 8999999999998886644

>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog

Probab=96.22  E-value=0.0078  Score=43.61  Aligned_cols=52  Identities=17%  Similarity=0.377  Sum_probs=36.6

Q ss_pred             CCCCCCHHHHHHHHHhC---CCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchH
Q psy2001         120 NPLKWTVTEVCDFIRNL---PGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPA  175 (202)
Q Consensus       120 nV~~WTvedV~ewL~sl---~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGIKLGpr  175 (202)
                      ++..||.++|..||.-.   .++.. -...|   .+||++|-.|++++....... .|+-
T Consensus         1 DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~~F---~m~Gk~LC~ls~edF~~r~P~-~Gdi   56 (66)
T cd08536           1 DPRSWSREHVRTWLRWVSARYQLEVVDLDKF---LMNGKGLCLMSLEGFLYRVPV-GGKL   56 (66)
T ss_pred             CcccCCHHHHHHHHHHHHHHhCCCCCCcccc---CCCHHHHHcCCHHHHHhhcCC-ccHH
Confidence            57899999999999432   13333 23344   699999999999999754332 5543

Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.

>KOG1945|consensus

Probab=95.28  E-value=0.038  Score=51.94  Aligned_cols=66  Identities=23%  Similarity=0.341  Sum_probs=52.0

Q ss_pred             CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSM  185 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~L  185 (202)
                      ..++-.|++.+|..|+.++ ....|+..|..+.++|..|+.+....+ +.||.. --+|-.....|+.+
T Consensus       261 lE~l~~~~k~q~~~~~~s~-~kei~a~e~a~q~~~~y~L~q~q~~~k-~~L~~tk~~dralr~k~le~~  327 (377)
T KOG1945|consen  261 LELLVTWKKQQVYHWLLSL-NKEIYAQEFAAQEQAGYQLLQLQGRKK-KLLGRTKSHDRALRKKKLEEM  327 (377)
T ss_pred             hhhhhhhHHHHHHHHHHhh-hHHHHHHHHHHhhcccchhhccchHHH-HHhhccccchHHHHHHHHHHH
Confidence            4557889999999999986 678899999999999999999999887 689984 43443333344333

>KOG0196|consensus

Probab=94.13  E-value=0.11  Score=53.62  Aligned_cols=63  Identities=22%  Similarity=0.377  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhCCCChHHHHHHhhcCC-ChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         126 VTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       126 vedV~ewL~sl~Gc~eyaelFreneI-DGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ..-|-+||+.| +.+.|.+.|...++ .-+.+..++.+||. .+|| -.|+-+||+..|+.+|....
T Consensus       923 f~sv~~WL~aI-km~rY~~~F~~ag~~s~~~V~q~s~eDl~-~~Gitl~GhqkkIl~SIq~m~~q~~  987 (996)
T KOG0196|consen  923 FRSVGDWLEAI-KMGRYKEHFAAAGYTSFEDVAQMSAEDLL-RLGITLAGHQKKILSSIQAMRAQMR  987 (996)
T ss_pred             cCCHHHHHHHh-hhhHHHHHHHhcCcccHHHHHhhhHHHHH-hhceeecchhHHHHHHHHHHHHHhc
Confidence            44578899999 89999999998875 46778899999995 7999 57999999999999998764

>KOG3930|consensus

Probab=93.84  E-value=0.076  Score=49.58  Aligned_cols=49  Identities=18%  Similarity=0.440  Sum_probs=44.4

Q ss_pred             hHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         140 AEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       140 ~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..|+..|-+|.|.-+.||.|+++-| .+||+ -+|+-+-|+++|+-.....
T Consensus        19 ~~YA~~Fv~NRIqk~MLldLnKe~l-~ElGvT~iGDiiaILrh~K~v~~q~   68 (389)
T KOG3930|consen   19 KKYAKSFVTNRIQKEMLLDLNKETL-SELGVTAIGDIIAILRHIKAVKSQI   68 (389)
T ss_pred             hhHHHHHHhhhhhHHHHhhhhHHHH-HHhchhhhhhHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999 69999 6899999999999886654

>KOG0249|consensus

Probab=86.14  E-value=0.55  Score=48.07  Aligned_cols=53  Identities=21%  Similarity=0.513  Sum_probs=44.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCH----HHHHHhhCC
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQA----KHLMEAMSM  170 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLte----edL~k~LGI  170 (202)
                      ....+|.-||-+.|..|+++| |+++|+..+.+-.|-|. |+.|++    .+|.-.++|
T Consensus       753 ~~i~DvlVWsN~RvirWV~~i-gL~eya~NL~eSGVHGa-LlaLdetFd~s~lAl~LqI  809 (916)
T KOG0249|consen  753 TEITDVLVWSNDRVIRWVQSI-GLGEYANNLKESGVHGA-LLALDETFDYSTLALALQI  809 (916)
T ss_pred             cccccceEeecHHHHHHHHhc-CHHHHhhhhhhhcccce-eeeecccCChHHHHHHHcC
Confidence            346789999999999999999 99999999999999995 556654    566666777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1pk1_A	89	Hetero Sam Domain Structure Of Ph And Scm. Length =		4e-19
1kw4_A	89	Polyhomeotic Sam Domain Structure Length = 89		4e-19
1pk1_B	89	Hetero Sam Domain Structure Of Ph And Scm. Length =		1e-07
1pk3_A	89	Scm Sam Domain Length = 89		2e-07

>pdb|1PK1|A Chain A, Hetero Sam Domain Structure Of Ph And Scm. Length = 89

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 52/64 (81%)
Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
           W+V +V +FIR LPGC +YV+DF  QEIDGQAL+LL+ KHL+ A   KLGPA KIVAK++
Sbjct: 17  WSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAXGXKLGPARKIVAKVE 76
Query: 184 SMRQ 187
           S+++
Sbjct: 77  SIKE 80

>pdb|1KW4|A Chain A, Polyhomeotic Sam Domain Structure Length = 89

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 52/64 (81%)
Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
           W+V +V +FIR LPGC +YV+DF  QEIDGQAL+ L+ KHL+ A   KLGPALKIVAK++
Sbjct: 17  WSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAXGXKLGPALKIVAKVE 76
Query: 184 SMRQ 187
           S+++
Sbjct: 77  SIKE 80

>pdb|1PK1|B Chain B, Hetero Sam Domain Structure Of Ph And Scm. Length = 89

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 121 PLKWTVTEVCDFIR-NLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKI 178
           P+ WT+ EV  +I  N    A + + F   EIDG+AL+ L ++ +M+ M +KLGPALKI
Sbjct: 14  PIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKI 72

>pdb|1PK3|A Chain A, Scm Sam Domain Length = 89

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 121 PLKWTVTEVCDFIR-NLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKI 178
           P+ WT+ EV  +I  N    A + + F   EIDG+AL+ L ++ +M+ M +KLGPALKI
Sbjct: 14  PIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKI 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	1e-27
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	4e-26
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	1e-14
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	5e-14
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	8e-14
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	9e-14
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	1e-13
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	1e-13
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	1e-11
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	5e-10
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	2e-09
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	2e-09
2k60_A	150	Protein (stromal interaction molecule 1); EF-hand,	5e-09
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	1e-08
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	8e-08
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	3e-07
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	3e-07
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	1e-05
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	2e-05
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	4e-05
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	4e-05
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	9e-05
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	1e-04
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	2e-04
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	3e-04
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	5e-04

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A Length = 89

 Score = 99.2 bits (247), Expect = 1e-27
 Identities = 42/78 (53%), Positives = 56/78 (71%)

Query: 113 PQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKL 172
                 P    W+V +V +FIR LPGC +YV+DF  QEIDGQAL+ L+ KHL+ AM MKL
Sbjct: 6   VNGTDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKL 65

Query: 173 GPALKIVAKIDSMRQAAE 190
           GPALKIVAK++S+++  +
Sbjct: 66  GPALKIVAKVESIKEVRD 83

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A Length = 89

 Score = 95.3 bits (237), Expect = 4e-26
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 108 ESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGC-AEYVEDFAMQEIDGQALMLLQAKHLME 166
           ++       S   P+ WT+ EV  +I +     A + + F   EIDG+AL+ L ++ +M+
Sbjct: 3   KTRANSHLRS--QPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMK 60

Query: 167 AMSMKLGPALKIVAKIDSMRQAAE 190
            M +KLGPALKI   ++ +     
Sbjct: 61  YMGLKLGPALKICNLVNKVNGRDH 84

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A Length = 76

 Score = 65.1 bits (159), Expect = 1e-14
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
            W+  +V D++ ++    E+ + F   EI+G  L  L  +  +E    ++G    I   +
Sbjct: 4   LWSKFDVGDWLESI-HLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERAL 62

Query: 183 DSMRQAAE 190
             +  +  
Sbjct: 63  RQLDGSRR 70

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens} Length = 81

 Score = 63.5 bits (155), Expect = 5e-14
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKI 178
               W   EV  ++ +L    EY + F   +I G  L+ L+ + L + + + K+G   +I
Sbjct: 6   PVHLWGTEEVAAWLEHL-SLCEYKDIFTRHDIRGSGLLHLERRDLKD-LGVTKVGHMKRI 63

Query: 179 VAKIDSMRQAAE 190
           +  I  + +++ 
Sbjct: 64  LCGIKELSRSSR 75

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens} Length = 80

 Score = 63.2 bits (154), Expect = 8e-14
 Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 123 KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAK 181
           KW+ ++V D+++ L     +Y+++F  ++I G  L+ +  + L +    ++G    I+  
Sbjct: 6   KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEA 65

Query: 182 IDSMRQAAEG 191
           +D +     G
Sbjct: 66  VDLLCALNYG 75

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83

 Score = 62.8 bits (153), Expect = 9e-14
 Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 123 KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAK 181
           KW+ ++V D+++ L     +Y+++F  ++I G  L+ +  + L +    ++G    I+  
Sbjct: 10  KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEA 69

Query: 182 IDSMRQAAEG 191
           +D +     G
Sbjct: 70  VDLLCALNSG 79

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84

 Score = 62.7 bits (152), Expect = 1e-13
 Identities = 16/80 (20%), Positives = 30/80 (37%)

Query: 107 GESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLME 166
           G S          +    ++ EV   +R +    + +  F  ++IDG  L+ L  + L E
Sbjct: 1   GSSGSSGPWQPPADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSE 60

Query: 167 AMSMKLGPALKIVAKIDSMR 186
              +      KI+  I+   
Sbjct: 61  DFKLSKLQVKKIMQFINGSG 80

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus} Length = 74

 Score = 62.3 bits (152), Expect = 1e-13
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAK 181
           +W+V +V  ++  L    +YV +F+ Q I G+ L+ L    L   + M        +  K
Sbjct: 6   EWSVQQVSHWLVGL-SLDQYVSEFSAQNISGEQLLQLDGNKLKA-LGMTSSQDRALVKKK 63

Query: 182 IDSMRQAAE 190
           +  M+ + E
Sbjct: 64  LKEMKMSLE 72

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 58.3 bits (141), Expect = 1e-11
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 113 PQTPSLPNPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK 171
           P     P+   W   +VC F+R         +++    EI G  L  L            
Sbjct: 19  PGLELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSS 78

Query: 172 LGPALKIVAKIDSMRQA 188
           LG   K+++ I  + Q 
Sbjct: 79  LGERKKLLSYIQRLVQI 95

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster} Length = 78

 Score = 52.9 bits (127), Expect = 5e-10
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 123 KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVA 180
            WTV++V  + R       +Y + FA  +I G+AL+ +    L   M +        I  
Sbjct: 5   LWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQR-MGVTDNRDREAIWR 63

Query: 181 KIDSMRQAAE 190
           +I   R   +
Sbjct: 64  EIVKQRLKTD 73

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster} Length = 106

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 113 PQTPSLPNPL-KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM 170
               + P  +  WTV++V  + R       +Y + FA  +I G+AL+ +    L   M +
Sbjct: 14  RTKTTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQR-MGV 72

Query: 171 -KLGPALKIVAKIDSMRQAAE 190
                   I  +I   R   +
Sbjct: 73  TDNRDREAIWREIVKQRLKTD 93

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} Length = 74

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM 185
            + +  F+ +L    ++      ++ID +ALML     L   +S+ LGP  KI+  +   
Sbjct: 2   TSPLETFLASL-HMEDFAALLRQEKIDLEALMLCSDLDLRS-ISVPLGPREKILGAVRRR 59

Query: 186 RQAAE 190
           RQA E
Sbjct: 60  RQAME 64

>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens} Length = 150

 Score = 52.0 bits (124), Expect = 5e-09
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 75  DLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIR 134
           + +RED+   D        H E+ +   + L                  WTV EV  ++ 
Sbjct: 39  EFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVY-------NWTVDEVVQWLI 91

Query: 135 NLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLG 173
                 +Y E F   ++ G A+  L   +        L 
Sbjct: 92  TYVELPQYEETFRKLQLSGHAMPRLAVTN-TTMTGTVLK 129

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
            WT  +V  ++R L   +     F   ++ G+ L+ L  + L       LG    I+  +
Sbjct: 13  TWTPGKVATWLRGL-DDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGV 71

Query: 183 DSMRQ 187
           + ++ 
Sbjct: 72  EQLQA 76

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 91

 Score = 47.3 bits (112), Expect = 8e-08
 Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 123 KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLM-EAMSMKLGPALK-IV 179
           KWT  EV  ++  L P  + Y + F  + ++G+ L+ L  +       +++     + I+
Sbjct: 19  KWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVIL 78

Query: 180 AKIDSMRQAA 189
            +++ +R   
Sbjct: 79  TELERVRSGP 88

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens} Length = 150

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 75  DLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIR 134
           + IRED+   D       LH E+     + L                  WT+ +   ++ 
Sbjct: 39  EFIREDMKYKDATNKHSHLHREDKHITIEDLWKRWKTSEVH-------NWTLEDTLQWLI 91

Query: 135 NLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLG 173
                 +Y ++F    + G  L  +        M  +L 
Sbjct: 92  EFVELPQYEKNFRDNNVKGTTLPRIAVHE-PSFMISQLK 129

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus} Length = 265

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAK 181
           KWT  +VC ++    G   Y+       I GQ L+    + L + + +K      K+   
Sbjct: 17  KWTKEQVCSWLAEQ-GLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLA 75

Query: 182 IDSMRQ 187
           + ++  
Sbjct: 76  LQALGS 81

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A Length = 85

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
             +  V  F+  + GC +Y++ F    +   + +  L    L+     K+G  LKI+ K 
Sbjct: 13  NDLPFVQLFLEEI-GCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKS 71

Query: 183 DSMRQ 187
            S ++
Sbjct: 72  KSFQR 76

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens} Length = 103

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 114 QTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQ---ALMLLQAKHLMEAMSM 170
           +  S  N  +  V  V  ++ ++ G  +Y         D        +++ + L+E   +
Sbjct: 10  KAGSEMNGPRCPVQTVGQWLESI-GLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGIL 68

Query: 171 KLGPALKIVAKIDSMRQAAEGAAGAPPPASTA 202
             G   +I+  I  + +          P S A
Sbjct: 69  NSGHRQRILQAIQLLPKMRPIGHDGYHPTSVA 100

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 107 GESTGCPQTPSLP--NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKH 163
           G S      P L    P     T V D++  +    +Y + F        Q +  + ++ 
Sbjct: 1   GSSGSSGSQPLLDRSIPDFTAFTTVDDWLSAI-KMVQYRDSFLTAGFTSLQLVTQMTSED 59

Query: 164 LMEAMSMKLGPALKIVAKIDSMRQAAEGAAGAPPPASTA 202
           L+       G   KI+  I SMR     +  A     ++
Sbjct: 60  LLRIGITLAGHQKKILNSIHSMRVQISQSPTAMASGPSS 98

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 81

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKI 182
            +   V D++ ++     Y + FA         ++ + A+ +       +G   KI+  I
Sbjct: 5   SSGLTVGDWLDSI-RMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSI 63

Query: 183 DSMRQAAEGAAGAPP 197
            +MR       G+ P
Sbjct: 64  QTMRAQLTSTQGSGP 78

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens} Length = 100

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 113 PQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMK 171
              P   +       ++  ++  +    +Y + F    +    A   L  + L +     
Sbjct: 13  GLVPRGSHMAAPQDLDIAVWLATV-HLEQYADTFRRHGLATAGAARGLGHEELKQLGISA 71

Query: 172 LGPALKIVAKIDSMRQAAEGAAGAPPPAS 200
            G   +I+  + +     EG+      ++
Sbjct: 72  TGHRKRILRLLQTGT--EEGSLDPKSDSA 98

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens} Length = 82

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKI 182
            +   V +++ ++    +Y E F        + ++ +    +        G   +I   +
Sbjct: 14  GSHMTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSL 72

Query: 183 DSMRQ 187
             ++ 
Sbjct: 73  LGLKD 77

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} Length = 86

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 6/70 (8%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALK 177
                     V +++ ++    +Y E F        + ++ +    +        G   +
Sbjct: 14  LYFQGVPFRTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKR 72

Query: 178 IVAKIDSMRQ 187
           I   +  ++ 
Sbjct: 73  IAYSLLGLKD 82

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2 Length = 94

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 107 GESTGCPQT-PSLP-----NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLL 159
           G  TG   + P+       +P    V  V D+++ +     Y ++F        +A++ +
Sbjct: 1   GSRTGSESSRPNTALLDPSSPEFSAVVSVGDWLQAI-KMDRYKDNFTAAGYTTLEAVVHM 59

Query: 160 QAKHLMEAMSMKLGPALKIVAKIDSMRQ 187
               L       +    KI++ + +MR 
Sbjct: 60  SQDDLARIGITAITHQNKILSSVQAMRT 87

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A Length = 82

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALK 177
             P   +   V +++  +    +Y E FA         +  +  + ++       G   K
Sbjct: 4   TRPDYTSFNTVDEWLEAI-KMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKK 62

Query: 178 IVAKIDSMRQ 187
           I+  I  MR 
Sbjct: 63  ILNSIQVMRA 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	99.87
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	99.86
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	99.76
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	99.76
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	99.76
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	99.75
2d8c_A	97	Phosphatidylcholine:ceramide cholinephosphotransfe	99.74
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	99.74
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	99.74
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	99.74
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	99.73
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	99.73
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	99.62
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	99.56
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	99.49
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	99.46
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	99.45
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	99.43
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	99.42
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	99.42
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	99.41
1uqv_A	85	STE50 protein; SAM, sterIle alpha motif, helical,	99.39
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	99.39
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	99.38
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	99.38
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	99.36
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	99.31
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	99.31
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	99.31
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	99.28
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	99.26
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	99.25
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	99.24
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	99.2
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	99.11
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	99.05
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	98.99
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	98.99
2eap_A	90	Lymphocyte cytosolic protein 2; cell-free protein	98.98
2k60_A	150	Protein (stromal interaction molecule 1); EF-hand,	98.95
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	98.94
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	98.93
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	98.86
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	98.83
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	98.72
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	98.72
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	98.67
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	98.65
2y9u_A	69	Tumor protein 63; apoptosis, sterIle alpha motif,	98.49
2qar_B	93	Telsam domain; polymer, crystallization modules, s	98.43
2y9t_A	82	Tumor protein 63; apoptosis, sterIle alpha motif,	98.41
1oxj_A	173	RNA-binding protein smaug; SAM domain, PHAT domain	98.34
1ji7_A	89	ETS-related protein TEL1; helical polymer, transcr	98.13
1sv0_C	82	Modulator of the activity of ETS CG15085-PA; alpha	98.1
3idw_A	72	Actin cytoskeleton-regulatory complex protein SLA;	97.9
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	97.82
2e8m_A	99	Epidermal growth factor receptor kinase substrate	97.57
1x66_A	98	Friend leukemia integration 1 transcription factor	97.52
1wwu_A	99	Hypothetical protein FLJ21935; structural genomics	97.38
2dkx_A	96	SAM pointed domain-containing ETS transcription fa	97.36
1sxd_A	91	GA repeat binding protein, alpha; alpha helical, t	97.19
1sv0_A	85	ETS DNA-binding protein pokkuri; alpha-helix, 3(10	97.18
2e8p_A	92	ELF3 protein; cell-free protein synthesis, protein	97.02
1sxe_A	97	Transcriptional regulator ERG; alpha helical, sign	96.86
2ytu_A	128	Friend leukemia integration 1 transcription factor	96.78
1dxs_A	80	P53-like transcription factor; P73 SAM-like domain	96.78
2jv3_A	110	ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, M	96.59
2qb0_B	241	Telsam domain - lysozyme chimera; helical polymer,	95.71
2h80_A	81	STAR-related lipid transfer protein 13; helical bu	82.9

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A

Probab=99.87  E-value=6.7e-23  Score=153.65  Aligned_cols=74  Identities=34%  Similarity=0.565  Sum_probs=66.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCC-CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLP-GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~-Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ...++|..||++||++||+++. ||++|++.|++|+|||++||+|+++||++.||||+|||+||+++|++||...
T Consensus         9 ~~~~~v~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~lk~~~   83 (89)
T 1pk1_B            9 HLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVNGRD   83 (89)
T ss_dssp             --CCCGGGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHHHC---
T ss_pred             CCCCCchhCCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCCccHHHHHHHHHHHHHccc
Confidence            4578899999999999999874 7999999999999999999999999999899999999999999999998754

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A

Probab=99.86  E-value=4.4e-22  Score=148.77  Aligned_cols=74  Identities=57%  Similarity=1.003  Sum_probs=67.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ...+++..||++||++||+++.||++|++.|++|+|||++|+.|+++||+++|||++|+|+||+++|++||...
T Consensus         9 ~~~~~v~~Ws~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~L~~~~   82 (89)
T 1kw4_A            9 TDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIKEVR   82 (89)
T ss_dssp             -CCCCGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC---
T ss_pred             CCCCCchhCCHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            44678999999999999999769999999999999999999999999998899999999999999999998764

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=99.76  E-value=4.9e-19  Score=125.95  Aligned_cols=69  Identities=25%  Similarity=0.478  Sum_probs=64.6

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      .++..||+++|++||.++ |+++|++.|++|+|||.+|+.|+.+|| +.||| ++|+|.+|+++|+.||...
T Consensus         2 ~~v~~Ws~~~V~~WL~~~-gl~~y~~~F~~~~i~g~~Ll~l~~~dL-~~lGI~~~g~r~kil~~i~~L~~~~   71 (74)
T 2gle_A            2 HMVHEWSVQQVSHWLVGL-SLDQYVSEFSAQNISGEQLLQLDGNKL-KALGMTSSQDRALVKKKLKEMKMSL   71 (74)
T ss_dssp             CCGGGCCSGGGHHHHHHT-TTHHHHHHHTTTTCCHHHHHTCCHHHH-HTTTCCCHHHHHHHHHHHHSHHHHH
T ss_pred             CCcccCCHHHHHHHHHHC-CCHHHHHHHHHcCCCHHHHhhCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            357899999999999998 999999999999999999999999998 68999 5999999999999999764

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=7.9e-19  Score=133.26  Aligned_cols=73  Identities=26%  Similarity=0.461  Sum_probs=68.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHhCCCChH--HHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         115 TPSLPNPLKWTVTEVCDFIRNLPGCAE--YVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       115 ~~~~snV~~WTvedV~ewL~sl~Gc~e--yaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      .....++..||++||++||..+ |+++  |++.|++|+|||.+|+.|+++|| ++||| ++|+|++|+++|+.||...
T Consensus        21 ~~~~~~v~~Ws~~~V~~WL~~l-gl~~~~y~~~F~~~~I~G~~Ll~Lt~~dL-keLGI~~~G~R~kil~~I~~Lr~~~   96 (103)
T 2e8o_A           21 LELHPDYKTWGPEQVCSFLRRG-GFEEPVLLKNIRENEITGALLPCLDESRF-ENLGVSSLGERKKLLSYIQRLVQIH   96 (103)
T ss_dssp             CCCCSCGGGCHHHHHHHHHHHH-TCCCHHHHHHHHHTTCCTTTTTTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHTTT
T ss_pred             cccccChhhCCHHHHHHHHHHc-CCChHHHHHHHHHcCCCHHHHHhCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHhH
Confidence            4557889999999999999998 9998  99999999999999999999999 58999 8999999999999999765

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}

Probab=99.76  E-value=1e-18  Score=125.40  Aligned_cols=70  Identities=24%  Similarity=0.368  Sum_probs=65.0

Q ss_pred             CCCCCCHHHHHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         120 NPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       120 nV~~WTvedV~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ++..||+++|++||..+ .||++|++.|++|+|||++|+.|+.+|| +.||| ++|+|.+|+++|+.||....
T Consensus         2 ~v~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL-~~lGI~~~g~r~~il~~I~~Lr~~~~   73 (78)
T 3bs7_A            2 AVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSL-QRMGVTDNRDREAIWREIVKQRLKTD   73 (78)
T ss_dssp             CGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHH-hHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            57899999999999985 4899999999999999999999999999 58999 79999999999999998764

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=99.75  E-value=2e-18  Score=124.42  Aligned_cols=72  Identities=22%  Similarity=0.502  Sum_probs=66.5

Q ss_pred             CCCCCCCHHHHHHHHHhCC-CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhcc
Q psy2001         119 PNPLKWTVTEVCDFIRNLP-GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEG  191 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~-Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~  191 (202)
                      .++..||+++|++||..+. |+++|++.|++|+|||++|+.|+.+|| +.||| ++|+|.+|+++|+.||....+
T Consensus         2 ~~v~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL-~~lGI~~~ghr~~il~~I~~L~~~~~~   75 (80)
T 3bs5_B            2 EPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVSRIGHQELILEAVDLLCALNYG   75 (80)
T ss_dssp             CCGGGCCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CccccCCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHhhhc
Confidence            4688999999999999984 699999999999999999999999999 58999 799999999999999987644

>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2

Probab=99.74  E-value=2e-18  Score=131.19  Aligned_cols=71  Identities=15%  Similarity=0.361  Sum_probs=65.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHH-hhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLME-AMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k-~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      ....+|..||++||++||+++ ||++|++.| +| |||++||.||++||.+ .||| ++|+|+||+++|++||+..
T Consensus        12 ~~~~~v~~Ws~edV~~WL~~~-Gl~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~   84 (97)
T 2d8c_A           12 RTMKEVVYWSPKKVADWLLEN-AMPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEH   84 (97)
T ss_dssp             SCCSCCSSCCTTHHHHHHHHT-TCTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHS
T ss_pred             CCCCchhhCCHHHHHHHHHHc-CCHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            446889999999999999997 999999999 67 9999999999999964 3999 8999999999999999875

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=99.74  E-value=2.6e-18  Score=125.05  Aligned_cols=70  Identities=23%  Similarity=0.484  Sum_probs=64.3

Q ss_pred             CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      +.++..||+++|++||.++ |+++|++.|++|+|||..|+.|+.+|| +.||| ++|+|+||+++|+.|+...
T Consensus         4 ~~~v~~Ws~~~V~~WL~~l-gl~~Y~~~F~~~~idg~~Ll~Lt~~dL-~~lGI~~~ghr~kIl~aI~~L~~~~   74 (81)
T 3bq7_A            4 TRPVHLWGTEEVAAWLEHL-SLCEYKDIFTRHDIRGSGLLHLERRDL-KDLGVTKVGHMKRILCGIKELSRSS   74 (81)
T ss_dssp             -CCGGGCCHHHHHHHHHHT-TCGGGHHHHHHTTCCHHHHTTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHC--
T ss_pred             CCChhhCCHHHHHHHHHHC-CCHHHHHHHHHcCCCHHHHCcCCHHHH-hHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999998 999999999999999999999999999 47999 8999999999999998754

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=99.74  E-value=2.1e-18  Score=124.24  Aligned_cols=67  Identities=18%  Similarity=0.346  Sum_probs=60.6

Q ss_pred             CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       121 V~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      |..||+++|++||.++ |+++|++.|++|+|||.+|+.|+++|| +.||| ++|+|+||+++|+.||...
T Consensus         2 v~~Ws~~~V~~WL~~l-gl~~Y~~~F~~~~idg~~Ll~Lt~~dL-~~lGI~~~Ghr~kIl~aI~~l~~~~   69 (76)
T 2f3n_A            2 LQLWSKFDVGDWLESI-HLGEHRDRFEDHEIEGAHLPALTKEDF-VELGVTRVGHRENIERALRQLDGSR   69 (76)
T ss_dssp             GGGCCHHHHHHHHHHT-TCGGGHHHHHHTTCCGGGGGGCCHHHH-HHTTCCCHHHHHHHHHHHHTC----
T ss_pred             hhhCCHHHHHHHHHHC-CCHHHHHHHHHcCCCHHHHccCCHHHH-HHcCCCChhHHHHHHHHHHHHHHHH
Confidence            5789999999999998 999999999999999999999999999 69999 5999999999999998754

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.74  E-value=1.5e-18  Score=129.12  Aligned_cols=72  Identities=19%  Similarity=0.373  Sum_probs=66.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCC--hHHHHHHhhcCCChHHHhcCCHHHHH-HhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGC--AEYVEDFAMQEIDGQALMLLQAKHLM-EAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc--~eyaelFreneIDGeaLLlLteedL~-k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      ....+|..||++||++||..+ |+  ++|++.|++|+|||++|+.||++||. ..||| .+|+|++|+++|+.||..
T Consensus        12 ~~~~~v~~Wt~~dV~~WL~~~-gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~   87 (91)
T 1v85_A           12 LVHKAVDKWTTEEVVLWLEQL-GPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSG   87 (91)
T ss_dssp             HHHSCGGGCCHHHHHHHHHHH-CGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCcccCCHHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            445789999999999999998 99  99999999999999999999999996 34999 799999999999999964

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=3.9e-18  Score=124.07  Aligned_cols=75  Identities=21%  Similarity=0.499  Sum_probs=68.1

Q ss_pred             CCCCCCCCCHHHHHHHHHhCC-CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccC
Q psy2001         117 SLPNPLKWTVTEVCDFIRNLP-GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGA  192 (202)
Q Consensus       117 ~~snV~~WTvedV~ewL~sl~-Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~  192 (202)
                      +..++..||+++|++||..+. |+++|++.|++|+|||++|+.|+.+|| ++||| ++|+|.+|+++|+.||....+.
T Consensus         4 ~~~~v~~Wt~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL-~~LGI~~~ghr~~il~~I~~L~~~~~~l   80 (83)
T 2ean_A            4 GSSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVSRIGHQELILEAVDLLCALNSGP   80 (83)
T ss_dssp             SCCSGGGCCTTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHH-HHHTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCccccCCHHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            356899999999999999984 479999999999999999999999999 58999 7999999999999999876543

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}

Probab=99.73  E-value=5.1e-18  Score=130.15  Aligned_cols=74  Identities=24%  Similarity=0.333  Sum_probs=66.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         115 TPSLPNPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       115 ~~~~snV~~WTvedV~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      .....++..||+++|++||..+ +||++|++.|++|+|||++|+.|+.+|| ++||| .+|+|.+|+++|+.||...
T Consensus        17 ~~~~~~v~~Wt~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL-k~LGI~~~GhR~kIl~~I~~Lr~~~   92 (106)
T 3bs5_A           17 TTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSL-QRMGVTDNRDREAIWREIVKQRLKT   92 (106)
T ss_dssp             ---CCCGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcccCCHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHH-HhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            3557789999999999999986 4799999999999999999999999999 58999 7999999999999999865

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.62  E-value=1.5e-16  Score=119.55  Aligned_cols=74  Identities=22%  Similarity=0.438  Sum_probs=65.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHhCC-CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         114 QTPSLPNPLKWTVTEVCDFIRNLP-GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       114 ~~~~~snV~~WTvedV~ewL~sl~-Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ......+|..||+++|++||+.+. ++.+|  .|++|+|+|++|+.|+.+|| +.||| ++|+|.+|+++|+.||....
T Consensus         4 ~~~~~~~v~~Wt~~~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL-~~LGI~~~Ghr~~Il~~I~~L~~~~~   79 (91)
T 1wwv_A            4 GSSGMEPVETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSL-EALAVRSLGHQELILGGVEQLQALSS   79 (91)
T ss_dssp             CSCSCCCTTTCCTTTHHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTG-GGGTCCCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCccccCCHHHHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHH-HHcCCCcHhHHHHHHHHHHHHHHHhh
Confidence            345678899999999999999652 57789  79999999999999999999 58999 89999999999999998863

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A

Probab=99.56  E-value=1.9e-15  Score=113.46  Aligned_cols=61  Identities=26%  Similarity=0.488  Sum_probs=55.7

Q ss_pred             HHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         128 EVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       128 dV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      +|++||.++ +|++|++.|++|+|+| +.|+.|+.++| ++||| ++|+|++|+++|+.||....
T Consensus        17 ~v~~wL~si-~c~qY~~~F~eN~I~g~d~L~eLd~e~L-kElGI~kvGdRirIlk~vk~Lr~~~~   79 (85)
T 1ow5_A           17 FVQLFLEEI-GCTQYLDSFIQCNLVTEEEIKYLDKDIL-IALGVNKIGDRLKILRKSKSFQRDKR   79 (85)
T ss_dssp             HHHHHHHHH-SCTHHHHHHHHHTCCCHHHHHHCCHHHH-HHHTCCCHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHc-CChhHHHHHHHcCCCcHHHHHHcCHHHH-HHhCCCcccHHHHHHHHHHHHHHHHh
Confidence            999999998 9999999999999999 99999999999 69999 89999999999999987653

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}

Probab=99.49  E-value=6.1e-14  Score=101.38  Aligned_cols=63  Identities=30%  Similarity=0.439  Sum_probs=58.9

Q ss_pred             HHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhccC
Q psy2001         128 EVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGA  192 (202)
Q Consensus       128 dV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~~~  192 (202)
                      .|.+||.++ |+++|.+.|.+|+||+++|+.|+++|| +.|||++|||+||+++|+.+|.....+
T Consensus         4 ~v~~wL~~l-gL~~Y~~~F~~~~id~e~l~~lt~~DL-~~lGI~~G~RkkIl~ai~~~~~~~~~p   66 (74)
T 3k1r_B            4 PLETFLASL-HMEDFAALLRQEKIDLEALMLCSDLDL-RSISVPLGPREKILGAVRRRRQAMERP   66 (74)
T ss_dssp             HHHHHHHTT-TCGGGHHHHHHTTCCHHHHTTCCHHHH-HHTTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHC-CCHHHHHHHHHcCcCHHHHhHCCHHHH-HHcCCCcchHHHHHHHHHHHHHHhcCC
Confidence            589999998 999999999999999999999999999 699999999999999999999876643

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}

Probab=99.46  E-value=6.7e-14  Score=102.71  Aligned_cols=69  Identities=9%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      .-+..|+.++|.+||.++ |+++|++.|.+++|| ++.|+.|+++|| +.||| ++|+|.||+++|+.||...
T Consensus         9 ~~~~~~~~~~V~~WL~~l-gL~qY~~~F~~~gid~~~~L~~lt~~DL-~~lGI~~~GhRkkIl~ai~~Lr~~~   79 (82)
T 2kso_A            9 GLVPRGSHMTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDI-KRIGVRLPGHQKRIAYSLLGLKDQV   79 (82)
T ss_dssp             ---------CHHHHHHHT-TCTTHHHHHHHTTCCSHHHHTTCCHHHH-HHHHCCCTTHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcchHHHHHHHC-CCHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCChhHHHHHHHHHHHHHHHH
Confidence            346679999999999998 999999999999999 999999999999 68999 5799999999999999865

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}

Probab=99.45  E-value=6.4e-14  Score=106.70  Aligned_cols=68  Identities=10%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      +....++..+|.+||.++ |+++|++.|.+|+|| |+.|+.|+.+|| +.||| ++|+|+||+++|+.||..
T Consensus        19 ~~m~~~~~~~V~~WL~~l-gL~qY~~~F~~~gid~~~~L~~Lt~eDL-keLGIt~~GhRkkIL~aI~~Lr~~   88 (100)
T 2kg5_A           19 SHMAAPQDLDIAVWLATV-HLEQYADTFRRHGLATAGAARGLGHEEL-KQLGISATGHRKRILRLLQTGTEE   88 (100)
T ss_dssp             -CCSCCTTCBHHHHHGGG-TCGGGHHHHHHTTCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHTTTTTC
T ss_pred             cccCCCCcChHHHHHHHC-CCHHHHHHHHHcCCChHHHHHhcCHHHH-HHCCCCChhHHHHHHHHHHHHHhc
Confidence            334456778999999998 999999999999999 999999999999 58999 689999999999999964

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.43  E-value=2e-13  Score=99.44  Aligned_cols=70  Identities=21%  Similarity=0.391  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccCCCCCC
Q psy2001         126 VTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGAAGAPP  197 (202)
Q Consensus       126 vedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~~~~~~  197 (202)
                      +.+|.+||.++ |+++|++.|.+|+|| ++.|+.|+++|| +.||| ++|+|+||+++|+.||.......+.-|
T Consensus         7 ~~~V~~WL~~l-gL~~Y~~~F~~~~~d~~~~l~~lt~~DL-~~lGI~~~GhrkkIl~ai~~l~~~~~~~~~~~~   78 (81)
T 1ucv_A            7 GLTVGDWLDSI-RMGRYRDHFAAGGYSSLGMVLRMNAQDV-RALGITLMGHQKKILGSIQTMRAQLTSTQGSGP   78 (81)
T ss_dssp             CSBHHHHHHHT-TCGGGHHHHHHTTCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHSCCSSCSS
T ss_pred             cchHHHHHHHC-CCHHHHHHHHHcCCChHHHHHHcCHHHH-HhCCCCChhHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            46799999998 999999999999999 899999999999 58999 579999999999999998765544443

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.6e-13  Score=101.50  Aligned_cols=69  Identities=22%  Similarity=0.276  Sum_probs=61.9

Q ss_pred             CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhcc
Q psy2001         121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEG  191 (202)
Q Consensus       121 V~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~  191 (202)
                      +...++.+|.+||.++ |+++|++.|.+|+|| ++.|+.|+++|| +.||| ++|+|+||+++|+.||.....
T Consensus        17 p~~~~~~~V~~WL~~l-gL~~Y~~~F~~~~~~~~~~L~~lt~~DL-~~lGI~~~GhRkkIl~ai~~l~~~~~~   87 (99)
T 2eao_A           17 PDFTAFTTVDDWLSAI-KMVQYRDSFLTAGFTSLQLVTQMTSEDL-LRIGITLAGHQKKILNSIHSMRVQISQ   87 (99)
T ss_dssp             CCTTSCCBHHHHHHTT-TCGGGHHHHHHHTCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCcchHHHHHHHHHC-CcHHHHHHHHHcCCChHHHHhhCCHHHH-HHCCCCChhHHHHHHHHHHHHHHHhhc
Confidence            3344578999999998 999999999999999 999999999999 58999 579999999999999988743

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}

Probab=99.42  E-value=2.7e-13  Score=101.45  Aligned_cols=69  Identities=16%  Similarity=0.311  Sum_probs=62.6

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+..|++++|.+||.++ |+++|.+.|.+++|| ++.|+.|+++|| +.||| ++|+|+||+++|+.||...
T Consensus        18 ~~~~~~~~~~V~~WL~~l-gL~qY~~~F~~~g~d~~e~l~~lt~~DL-~~lGIt~~GHRkkIL~ai~~Lr~qm   88 (90)
T 3h8m_A           18 GTPDFTTFCSVGEWLQAI-KMERYKDNFTAAGYNSLESVARMTIEDV-MSLGITLVGHQKKIMSSIQTMRAQM   88 (90)
T ss_dssp             -CCCCCCCSSHHHHHHHT-TCGGGHHHHHHTTCCSHHHHHTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcchhHHHHHHHHC-ChHHHHHHHHHcCCChHHHHhhCCHHHH-HHCCCCCHHHHHHHHHHHHHHHHHh
Confidence            345678999999999998 999999999999999 999999999999 58999 6899999999999998753

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=5e-13  Score=98.67  Aligned_cols=66  Identities=9%  Similarity=0.239  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       123 ~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ..++.+|.+||.++ |+++|++.|.+|+|| ++.|+.|+++|| +.||| ++|+|.||+++|+.||....
T Consensus         9 ~~~~~~V~~WL~~l-gL~~Y~~~F~~~~~~~~~~l~~lt~~dL-~~lGI~~~GhRkkIl~ai~~l~~~~~   76 (88)
T 2e8n_A            9 GVPFRTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDV-KRIGVRLPGHQKRIAYSLLGLKDQVN   76 (88)
T ss_dssp             CCSCSSHHHHHHHT-TCGGGHHHHHHHTCSSHHHHTTSCTTHH-HHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHC-CCHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCChhHHHHHHHHHHHHHHhhc
Confidence            34468999999998 999999999999999 999999999999 58999 57999999999999998764

>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A

Probab=99.39  E-value=4.5e-13  Score=100.54  Aligned_cols=70  Identities=21%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             CCCCCCCCCHHHHHHHH-HhCCCChH---HHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         117 SLPNPLKWTVTEVCDFI-RNLPGCAE---YVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       117 ~~snV~~WTvedV~ewL-~sl~Gc~e---yaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      ...++..||++||+.|+ .++ |+.+   .++.|++|+|+|..|+.|+-+|| |+|++ .+|.|++|+..|++||..
T Consensus         5 ~~~~v~~Wt~~~V~~W~~~~l-g~~d~d~~~~~f~~ndItG~vL~eL~leDl-KEL~i~s~~~r~~lk~~In~Lr~~   79 (85)
T 1uqv_A            5 NNEDFSQWSVDDVITWCISTL-EVEETDPLCQRLRENDIVGDLLPELCLQDC-QDLCDGDLNKAIKFKILINKMRDS   79 (85)
T ss_dssp             SCCCTTTCCHHHHHHHHHHHH-SSCTTSTHHHHHHHSCCCGGGHHHHHHHHH-HHTSSSCHHHHHHHHHHHHHHHHC
T ss_pred             cccccccCCHHHHHHHHHHHh-CCCCccHHHHHHHHcCCchhhHHHcCHHHH-HHhCchHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999 664 6655   68999999999999999999999 68999 899999999999999843

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A

Probab=99.39  E-value=5.2e-13  Score=96.98  Aligned_cols=64  Identities=17%  Similarity=0.312  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHhCCCChHHHHHHhhcCC-ChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         125 TVTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       125 TvedV~ewL~sl~Gc~eyaelFreneI-DGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      +..+|.+||.++ |+++|.+.|.+|+| |++.|+.|+++||. .||| ++|+|.||+++|+.||....
T Consensus        10 ~~~~v~~WL~~l-gL~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhrkkIl~ai~~l~~~~~   75 (82)
T 1b4f_A           10 SFNTVDEWLEAI-KMGQYKESFANAGFTSFDVVSQMMMEDIL-RVGVTLAGHQKKILNSIQVMRAQMN   75 (82)
T ss_dssp             CCSSHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHC-CCHHHHHHHHHcCCCCHHHHHhCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHc
Confidence            467899999998 99999999999999 89999999999995 8999 57999999999999998753

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}

Probab=99.38  E-value=1.7e-13  Score=99.99  Aligned_cols=63  Identities=22%  Similarity=0.324  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHhCCCChHHHHHHhhcC-CChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         125 TVTEVCDFIRNLPGCAEYVEDFAMQE-IDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       125 TvedV~ewL~sl~Gc~eyaelFrene-IDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      +..+|.+||.++ |+++|++.|.+|+ |||+.|+.|+++|| +.||| ++|+|+||+++|+.||...
T Consensus        14 ~~~~V~~WL~~l-gL~~Y~~~F~~~~~~~~~~l~~lt~~dL-~~lGI~~~GhrkkIl~ai~~l~~~~   78 (83)
T 2qkq_A           14 AFGSVGEWLRAI-KMGRYEESFAAAGFGSFELVSQISAEDL-LRIGVTLAGHQKKILASVQHMKSQA   78 (83)
T ss_dssp             CCSSHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHTTC----
T ss_pred             ccchHHHHHHHC-CCHHHHHHHHHcCCCcHHHHhhCCHHHH-HHCCCCCHHHHHHHHHHHHHHHHHh
Confidence            367999999998 9999999999999 89999999999999 57999 5999999999999999765

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}

Probab=99.38  E-value=9.7e-14  Score=105.46  Aligned_cols=78  Identities=18%  Similarity=0.364  Sum_probs=56.2

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHh---cCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH-hccCC
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA-AEGAA  193 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLL---lLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~-~~~~~  193 (202)
                      -+...|++.+|.+||.++ |+++|++.|.+|+|||..++   .|+++|| ++||| ++|+|.||+++|+.||.. ..+..
T Consensus        15 ~~~~~w~~~~V~~WL~~i-gL~qY~~~F~~~gid~~~~l~~~~lt~~DL-~~lGI~~~GhRkkIl~ai~~L~~~~~~~~~   92 (103)
T 2ke7_A           15 MNGPRCPVQTVGQWLESI-GLPQYENHLMANGFDNVQFMGSNVMEDQDL-LEIGILNSGHRQRILQAIQLLPKMRPIGHD   92 (103)
T ss_dssp             --------CCTTHHHHHT-TCTTCHHHHHHTTCCCHHHHHTTCCCHHHH-HHHTCCCHHHHHHHHHHHHHSCC-------
T ss_pred             ccccCCCHhHHHHHHHHC-CCHHHHHHHHHcCCCcHHHHhcccCCHHHH-hHCCCCCHHHHHHHHHHHHHHHhcccccCC
Confidence            456789999999999998 99999999999999999986   9999999 58999 699999999999999864 33455


Q ss_pred             CCCCC
Q psy2001         194 GAPPP  198 (202)
Q Consensus       194 ~~~~~  198 (202)
                      ++.|.
T Consensus        93 ~~~P~   97 (103)
T 2ke7_A           93 GYHPT   97 (103)
T ss_dssp             -----
T ss_pred             CCCCc
Confidence            55553

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2

Probab=99.36  E-value=8e-13  Score=98.78  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=60.2

Q ss_pred             CCCCHHHHHHHHHhCCCChHHHHHHhhcCC-ChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       122 ~~WTvedV~ewL~sl~Gc~eyaelFreneI-DGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ...++.+|.+||.++ |+++|.+.|.+|+| |++.|+.|+++|| +.||| ++|+|+||+.+|+.||....
T Consensus        22 ~~~~~~~V~~WL~~l-gL~~Y~~~F~~~g~~~~~~l~~lt~~DL-~~lGI~~~GhrkkIl~ai~~L~~~~~   90 (94)
T 1b0x_A           22 EFSAVVSVGDWLQAI-KMDRYKDNFTAAGYTTLEAVVHMSQDDL-ARIGITAITHQNKILSSVQAMRTQMQ   90 (94)
T ss_dssp             -CCSSCCHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHC-CcHHHHHHHHHcCCCCHHHHhhCCHHHH-HHCCCCChhHHHHHHHHHHHHHHHHh
Confidence            344678999999998 99999999999999 8999999999999 58999 57999999999999998753

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=7.2e-12  Score=93.78  Aligned_cols=70  Identities=23%  Similarity=0.275  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHhCCCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHH
Q psy2001         113 PQTPSLPNPLKWTVTEVCDFIRNLPGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID  183 (202)
Q Consensus       113 ~~~~~~snV~~WTvedV~ewL~sl~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik  183 (202)
                      +.-..+.+.+.||++||++||+.+ |+++ |++.|++|.|||.-|+.|++++|.++||++-=.++||+.+|+
T Consensus         7 ~~w~pP~dLs~lSv~EVs~~Lr~i-gL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~   77 (84)
T 2dkz_A            7 GPWQPPADLSGLSIEEVSKSLRFI-GLSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFIN   77 (84)
T ss_dssp             CCCCCCSCCSSCCHHHHHHHGGGT-CCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             CCCCCchhhhhcCHHHHHHHHHHc-CCcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence            345678999999999999999998 8987 579999999999999999999999899998888999999996

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=6.9e-13  Score=96.09  Aligned_cols=63  Identities=16%  Similarity=0.386  Sum_probs=58.2

Q ss_pred             CCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHh---cCCHHHHHHhhCC-CcchHHHHHHHHHHHHH
Q psy2001         123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSM-KLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       123 ~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLL---lLteedL~k~LGI-KLGprlKI~~~Ik~Lr~  187 (202)
                      .+++.+|.+||.++ |+++|.+.|.+|+|||..++   .|+++|| ++||| ++|+|.||+++|+.||.
T Consensus         9 ~~~~~~V~~WL~~l-gL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL-~~lGI~~~ghR~kIl~ai~~L~~   75 (80)
T 2eam_A            9 RCPVQTVGQWLESI-GLPQYENHLMANGFDNVQFMGSNVMEDQDL-LEIGILNSGHRQRILQAIQLLPS   75 (80)
T ss_dssp             CCCCCCHHHHHHHH-TCGGGHHHHHHTTCCCTTTSSSSSSCTTHH-HHSSCCCHHHHHHHHHHHHHSCC
T ss_pred             CCChhHHHHHHHHC-CCHHHHHHHHHcCCChHHHHhhccCCHHHH-HHCCCCCHHHHHHHHHHHHHHhc
Confidence            57788999999998 99999999999999999876   9999999 58999 69999999999999985

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.7e-12  Score=98.36  Aligned_cols=70  Identities=10%  Similarity=0.143  Sum_probs=64.1

Q ss_pred             CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      ...+..|.+.+|.+||..+ ++++|++.|.+|++|+ +.|..|+.+|| +.||| ++|+|+||+++|+.||...
T Consensus        15 ~~p~~~~~~~sV~eWL~~i-gL~qY~~~F~~~g~d~le~l~~lt~~DL-~~lGIt~~gHrkkIl~ai~~lr~~~   86 (97)
T 2dl0_A           15 RKPVSPGCISSVSDWLISI-GLPMYAGTLSTAGFSTLSQVPSLSHTCL-QEAGITEERHIRKLLSAARLFKLPP   86 (97)
T ss_dssp             CCCCCCSCCCSHHHHHHHH-TCGGGHHHHHHHTCCSTTSGGGCCHHHH-HHHTCCCHHHHHHHHHHHHTCCCCC
T ss_pred             cCCCCccccCcHHHHHHHC-CCHHHHHHHHHcCCCcHHHHHhcCHHHH-HHCCCCCHHHHHHHHHHHHHHHccc
Confidence            4566779999999999998 9999999999999998 88999999999 58999 6999999999999998764

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B

Probab=99.28  E-value=1.5e-12  Score=96.88  Aligned_cols=66  Identities=12%  Similarity=0.168  Sum_probs=58.6

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHH
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMR  186 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr  186 (202)
                      .....|+..+|.+||.++ |+++|++.|.+|+|| .+.|..|+++|| ++||| .+|+|.||+.+|+.||
T Consensus        19 ~~~~~~~~~~V~eWL~~l-gL~qY~~~F~~~g~~~le~l~~lt~~DL-~~lGIt~~GHRkkIL~aI~~LK   86 (86)
T 2k4p_A           19 SHMSGLGEAGMSAWLRAI-GLERYEEGLVHNGWDDLEFLSDITEEDL-EEAGVQDPAHKRLLLDTLQLSK   86 (86)
T ss_dssp             ---CCCCSCSSHHHHHTT-TCGGGHHHHHTTTCCCHHHHTTCCHHHH-HHTTCCCHHHHHHHHHHHHHCC
T ss_pred             CcCCCCCcCcHHHHHHHC-CCHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCCHHHHHHHHHHHHHcC
Confidence            445679999999999998 999999999999996 589999999999 58999 6899999999999875

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=99.26  E-value=6.6e-12  Score=110.29  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=65.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      .....+..|+.++|+.||+.+ |+++|++.|++|.+||..|+.||++||.+++|| +.++|+||+.+|++|+...
T Consensus        10 ~~~~p~~~W~~e~V~~WLe~~-GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~~   83 (265)
T 3tad_C           10 DLDMPFAKWTKEQVCSWLAEQ-GLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEE   83 (265)
T ss_dssp             ----CGGGSCHHHHHHHHHHT-TCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHCS
T ss_pred             CCCCChhhCChHHHHHHHHHH-CHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            345668899999999999997 999999999999999999999999999889999 7999999999999999753

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0

Probab=99.25  E-value=4.9e-12  Score=93.92  Aligned_cols=63  Identities=10%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         124 WTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       124 WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      .++++|.+||.++ |+++|.+.|.+++|| .+.|..|+++|| +.||| ++|+|.||+.+|+.||..
T Consensus        19 ~~~~~V~~WL~~l-gL~qY~~~F~~~g~d~le~l~~lt~~DL-~~LGIt~~GHRkkIL~ai~~Lr~q   83 (86)
T 3kka_C           19 VPFRTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDI-KRIGVRLPGHQKRIAYSLLGLKDQ   83 (86)
T ss_dssp             ----CHHHHHHHT-TCGGGHHHHHHTTCCSHHHHHTCCHHHH-HHTTCCCHHHHHHHHHHHHHCC--
T ss_pred             cchhHHHHHHHhC-CcHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCCHHHHHHHHHHHHHHHHH
Confidence            4578999999998 999999999999999 699999999999 58999 679999999999999864

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A

Probab=99.24  E-value=5.4e-12  Score=92.95  Aligned_cols=61  Identities=18%  Similarity=0.354  Sum_probs=56.2

Q ss_pred             CCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHH
Q psy2001         123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSM  185 (202)
Q Consensus       123 ~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~L  185 (202)
                      ..++++|.+||.++ |+++|.+.|.+++|| ++.|+.|+++|| +.||| ++|+|+||+++|+.|
T Consensus        20 ~~~~~~V~~WL~~l-gL~qY~~~F~~~g~~s~e~l~~lt~~DL-~~lGIt~~GHRkkIL~aiq~l   82 (82)
T 3hil_A           20 GIPYRTVSEWLESI-RMKRYILHFHSAGLDTMECVLELTAEDL-TQMGITLPGHQKRILCSIQGF   82 (82)
T ss_dssp             CCCCSSHHHHHHHT-TCGGGHHHHHHTTCCSGGGGTTCCHHHH-HHTTCCCHHHHHHHHHHHHHC
T ss_pred             CcchhHHHHHHHhC-CHHHHHHHHHHcCCChHHHHhcCCHHHH-HHCCCCCHHHHHHHHHHHHhC
Confidence            45678999999998 999999999999999 999999999999 68999 689999999999864

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.20  E-value=3.4e-11  Score=89.69  Aligned_cols=62  Identities=11%  Similarity=0.281  Sum_probs=57.1

Q ss_pred             HHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         127 TEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       127 edV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      .+|.+||.++ ++++|++.|.+|+|+ .+.|..|+++|| +.||| ++|+|+||+++|+.||....
T Consensus        16 ~~V~~WL~~l-gL~qY~~~F~~~g~~~~~~l~~lt~~DL-~~lGI~~~GHrkkIl~ai~~L~~~~~   79 (91)
T 1x40_A           16 VDIKDFLMSI-NLEQYLLHFHESGFTTVKDCAAINDSLL-QKIGISPTGHRRRILKQLQIILSKMQ   79 (91)
T ss_dssp             CBHHHHHHTT-TCGGGHHHHHHHTCCBSGGGGGCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHC-CCHHHHHHHHHcCCCcHHHHhhcCHHHH-HHCCCCCHhHHHHHHHHHHHHHhhcC
Confidence            4799999998 999999999999996 689999999999 58999 69999999999999998764

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}

Probab=99.11  E-value=2.3e-11  Score=92.94  Aligned_cols=62  Identities=11%  Similarity=0.326  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhCCCChHHHHHHhhcCCChHHHh---cCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       126 vedV~ewL~sl~Gc~eyaelFreneIDGeaLL---lLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+|.+||.++ |+++|++.|.+|+|||..++   .|+++|| ++||| ++|+|+||+.+|+.|+...
T Consensus        29 ~~~V~eWL~~L-gL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL-~eLGIt~~GHRkkIL~aI~~L~~~~   94 (101)
T 2lmr_A           29 EQSVGEWLESI-GLQQYESKLLLNGFDDVHFLGSNVMEEQDL-RDIGISDPQHRRKLLQAARSLPKVK   94 (101)
T ss_dssp             SCCHHHHHHHH-TCGGGHHHHHHTTCCCTTSTTTSCCCHHHH-HHHTCCCHHHHHHHHHHHHTSSSCC
T ss_pred             cccHHHHHHHC-CCHHHHHHHHHcCCChHHHHhhccCCHHHH-HHCCCCCHHHHHHHHHHHHHHHhcc
Confidence            34899999998 99999999999999997665   5999999 58999 5899999999999998653

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=99.05  E-value=1.1e-10  Score=93.67  Aligned_cols=63  Identities=19%  Similarity=0.295  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       125 TvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      ++++|++||..+ |+++|.+.|.++++||+.|+.|+.+|| +.||| ..|+|.||+.+|+.|+...
T Consensus         9 ~~~~V~~WL~~l-gL~~Y~~~F~~~g~d~~~l~~lt~~DL-~~lGIt~~gHrkkil~ai~~L~~~~   72 (149)
T 3sei_A            9 SSEAVSQWLTAF-QLQLYAPNFISAGYDLPTISRMTPEDL-TAIGVTKPGHRKKIAAEISGLSIPD   72 (149)
T ss_dssp             HHHHHHHHHHTT-TCGGGHHHHHHTTCCHHHHTTCCHHHH-HHTTCCSHHHHHHHHHHHHTCCCCC
T ss_pred             cHHHHHHHHHHC-CcHHHHHHHHHcCCCHHHHccCCHHHH-HHcCCCCHHHHHHHHHHHHHHHhcc
Confidence            378999999998 999999999999999999999999999 58999 5899999999999998753

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}

Probab=98.99  E-value=3.9e-11  Score=97.97  Aligned_cols=66  Identities=11%  Similarity=0.347  Sum_probs=55.9

Q ss_pred             CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHH---HHHhhCC-CcchHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKH---LMEAMSM-KLGPALKIVAKIDSM  185 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteed---L~k~LGI-KLGprlKI~~~Ik~L  185 (202)
                      .+.|..||++||++||....++.+|+++|++|+|||.+|+.|+..+   |...||| ..++|-||.  ++.|
T Consensus        75 ~s~V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~--lkal  144 (150)
T 2l5y_A           75 TSEVHNWTLEDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ--LKAL  144 (150)
T ss_dssp             TSHHHHCCHHHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH--HHHH
T ss_pred             cCcchhCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH--HHHH
Confidence            4568899999999999774489999999999999999999999864   3468999 689999988  4444

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=98.99  E-value=7.5e-10  Score=88.86  Aligned_cols=60  Identities=13%  Similarity=0.274  Sum_probs=55.9

Q ss_pred             HHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         127 TEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       127 edV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      .+|.+||.++ |+++|.+.|.+++|| ++.|..||.+|| +.||| ++|+|+||+.+|+.|+.-
T Consensus        80 ~~v~~WL~~i-gL~qY~~~F~~~g~d~~~~l~~lt~~dL-~~lGI~~~gHr~kIl~ai~~l~~~  141 (149)
T 3sei_A           80 ANLAVWLSMI-GLAQYYKVLVDNGYENIDFITDITWEDL-QEIGITKLGHQKKLMLAVRKLAEL  141 (149)
T ss_dssp             SCHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHc-CchhhHHHHHHCCCchHHHHhhCCHHHH-HHCCCCCHHHHHHHHHHHHHHHHH
Confidence            4799999998 999999999999999 799999999999 68999 699999999999999764

>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=3.3e-10  Score=85.72  Aligned_cols=69  Identities=17%  Similarity=0.351  Sum_probs=56.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHhCCCChHHHHHHh-hcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHH
Q psy2001         114 QTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFA-MQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDS  184 (202)
Q Consensus       114 ~~~~~snV~~WTvedV~ewL~sl~Gc~eyaelFr-eneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~  184 (202)
                      +-...++|..||+++|++||++. |+.+ ++.|. +|+|||.+||.|+++||.+.-.+.+---.||...|++
T Consensus        12 ~~ps~seV~~Wsp~~VadWLkk~-g~~~-cd~lv~Kh~IDG~~lL~LtE~Dlrk~Pkl~~p~~~k~~q~in~   81 (90)
T 2eap_A           12 NVPFRSEVLGWDPDSLADYFKKL-NYKD-CEKAVKKYHIDGARFLNLTENDIQKFPKLRVPILSKLSQEINK   81 (90)
T ss_dssp             CCCCHHHHTTCCTTTHHHHHHHT-TCHH-HHHHHHHTTCCHHHHHTCCHHHHTTSCTTTHHHHHHHHHHHHT
T ss_pred             ccccCccccccCHHHHHHHHHHc-CCch-HHHHHHHhccCchhhhcccHHHhccCCccccHHHHHHHHHHhc
Confidence            34667889999999999999996 9988 88886 8999999999999999986555555556666666653

>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}

Probab=98.95  E-value=6.5e-11  Score=96.67  Aligned_cols=61  Identities=21%  Similarity=0.354  Sum_probs=53.1

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHH---HHHhhCC-CcchHHHHH
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKH---LMEAMSM-KLGPALKIV  179 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteed---L~k~LGI-KLGprlKI~  179 (202)
                      +.|..||+++|++||...-++.+|++.|++|+|||.+|+.|+.++   |...||| ..++|.||.
T Consensus        76 s~V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~  140 (150)
T 2k60_A           76 SEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQ  140 (150)
T ss_dssp             SHHHHCCHHHHHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHHH
Confidence            457889999999999654479999999999999999999999985   4468999 589998886

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=98.94  E-value=2.5e-10  Score=91.11  Aligned_cols=62  Identities=16%  Similarity=0.407  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHhCCCChHHHHHHhhcCCChHHHh---cCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       125 TvedV~ewL~sl~Gc~eyaelFreneIDGeaLL---lLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      +.++|++||.++ |+++|++.|.++++||..++   .|+.+||. .||| +.|+|+||+.+|+.|+..
T Consensus        13 ~~~~V~~WL~~i-gL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~-~lGI~~~ghRkkil~ai~~L~~~   78 (148)
T 2kiv_A           13 SVQTVGQWLESI-GLPQYENHLMANGFDNVQAMGSNVMEDQDLL-EIGILNSGHRQRILQAIQLLPKM   78 (148)
T ss_dssp             -CCBHHHHHHHH-SCTTSHHHHHHTTTTBGGGGTSSCCCHHHHH-HHCCSSTTSHHHHHHHHHHCSCC
T ss_pred             CcchHHHHHHHC-CCHHHHHHHHHcCCCHHHHhhhccCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHh
Confidence            345799999998 99999999999999997777   89999995 9999 689999999999999865

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=98.93  E-value=1e-09  Score=79.52  Aligned_cols=64  Identities=11%  Similarity=0.271  Sum_probs=57.2

Q ss_pred             CCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       123 ~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      ......|.+||..+ ++++|++.|..+++|+ +.+..|+++|| ..||| ..|+|.||+.+|+.|+..
T Consensus         9 ~~~~~~V~eWL~~i-~L~~Y~~~F~~~gy~~~~~~~~lt~~DL-~~lGI~~~ghrkkil~ai~~L~~~   74 (78)
T 1v38_A            9 RENHQTIQEFLERI-HLQEYTSTLLLNGYETLDDLKDIKESHL-IELNIADPEDRARLLSAAESLLSG   74 (78)
T ss_dssp             CSSCCBHHHHHHTT-TCGGGHHHHHHHTCCBHHHHTTCCHHHH-HHTTTCCHHHHHHHHHHHHHHHSC
T ss_pred             CCCcCcHHHHHHHC-CCHHHHHHHHHcCCCCHHHHhhcCHHHH-HHcCCCCHHHHHHHHHHHHHHHhc
Confidence            34667899999998 9999999999999975 77999999999 58999 689999999999999864

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=98.86  E-value=1.9e-09  Score=86.01  Aligned_cols=60  Identities=15%  Similarity=0.352  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHH
Q psy2001         124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDS  184 (202)
Q Consensus       124 WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~  184 (202)
                      ++...|.+||.++ |+++|++.|.+++++| +.|..|+.+||.+.||| ++|+|+||+.+|++
T Consensus        86 ~~~~~v~~WL~~i-~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~  147 (148)
T 2kiv_A           86 AHPTSVAEWLDSI-ELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGD  147 (148)
T ss_dssp             CCCSSHHHHHHTT-TCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred             CCcchHHHHHHHC-CcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhh
Confidence            4556899999998 9999999999999988 89999999998789999 79999999999864

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=98.83  E-value=6e-09  Score=94.25  Aligned_cols=69  Identities=16%  Similarity=0.221  Sum_probs=63.7

Q ss_pred             CCCCCCHHHHHHHHHhCCCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         120 NPLKWTVTEVCDFIRNLPGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       120 nV~~WTvedV~ewL~sl~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      .+..|+.++||.||+..-|+.. |++.|++|.++|..|+.|+.+||.+++|| ..++|+||..+|+.++..
T Consensus        35 Pfs~W~~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~~~  105 (334)
T 3tac_B           35 PFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSL  105 (334)
T ss_dssp             CGGGCCHHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCcHHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            3778999999999998239987 99999999999999999999999999999 799999999999999864

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=98.72  E-value=1.8e-08  Score=88.48  Aligned_cols=70  Identities=19%  Similarity=0.300  Sum_probs=63.8

Q ss_pred             CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccC
Q psy2001         121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGA  192 (202)
Q Consensus       121 V~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~  192 (202)
                      ...|+...|.+||..+ |+.+|.+.|.+|.|||..|..||.+||. .||| +.|+|.+|+.+|+.||...-+.
T Consensus        87 ~~~~d~~wv~~WL~~I-GL~QY~~~F~~~~iDg~~L~~LT~~DL~-~LGIt~~~HR~kil~aI~~L~~~~~d~  157 (265)
T 3tad_C           87 YGKLDFNWVTRWLDDI-GLPQYKTQFDEGRVDGRMLHYMTVDDLL-SLKVVSVLHHLSIKRAIQVLRINNFEP  157 (265)
T ss_dssp             GGGCCHHHHHHHHHHH-TCGGGHHHHHHHTCCHHHHHTCBHHHHH-HTTCCBHHHHHHHHHHHHHHHHTTTCT
T ss_pred             ccccChHHHHHHHHHc-CcHHHHHHHHHcCCCHHHhcccCHHHHH-HcCCCcHHhHHHHHHHHHHHhhcCCCH
Confidence            3567788899999998 9999999999999999999999999996 8999 7999999999999999876443

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A

Probab=98.72  E-value=2e-08  Score=75.58  Aligned_cols=60  Identities=15%  Similarity=0.240  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHHHHh
Q psy2001         126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       126 vedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+|.+||+++ ++..|.+.|..  ++=+.|+.||++|| +.+|+. +|.|.||+.+|..||...
T Consensus        18 ~~~V~~WL~sL-rLhKY~~~F~~--~~~~~l~~LtdedL-~~~GVta~GaRrKil~aI~~lr~~~   78 (88)
T 2d3d_A           18 LKNIPMWLKSL-RLHKYSDALSG--TPWIELIYLDDETL-EKKGVLALGARRKLLKAFGIVIDYK   78 (88)
T ss_dssp             HTCHHHHHHHT-TCGGGHHHHTT--SCHHHHTTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHc-ccchhHHHHhc--CCHHHHHHcCHHHH-HHcCCccHhHHHHHHHHHHHHHHHH
Confidence            34899999998 99999999965  68899999999999 589996 999999999999999765

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.67  E-value=3.1e-08  Score=78.17  Aligned_cols=60  Identities=15%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHHHHh
Q psy2001         126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       126 vedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+|.+||+.+ ++..|++.|  .+++-+.|+.|+++|| +.+|+. +|+|.||+.+|..||...
T Consensus        49 ~~dV~~WL~sL-rL~KY~~~F--~~~~~d~l~~LTeeDL-~~lGVta~GaRrKlL~AI~~Lr~~k  109 (119)
T 2b6g_A           49 LKNIPMWLKSL-RLHKYSDAL--SGTPWIELIYLDDETL-EKKGVLALGARRKLLKAFGIVIDYK  109 (119)
T ss_dssp             HHCHHHHHHHH-TCHHHHHHH--TTSCHHHHTTCCHHHH-HHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHC-CChhHHHHH--ccCCHHHHHhcCHHHH-HHCCCCccccHHHHHHHHHHHHhhh
Confidence            57899999998 999999999  4589999999999999 589995 999999999999998764

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A

Probab=98.65  E-value=3.2e-08  Score=76.29  Aligned_cols=59  Identities=15%  Similarity=0.234  Sum_probs=54.1

Q ss_pred             HHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHHHHh
Q psy2001         127 TEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       127 edV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr~~~  189 (202)
                      .+|.+||+++ ++.+|.+.|..  ++=+.|+.||++|| +.+|+. +|.|.||+.+|..||...
T Consensus        32 ~dV~~WLksL-rLhKY~~~F~~--~~~~~l~~LTdedL-~~~GVta~GARrKiL~aI~~Lr~~k   91 (101)
T 2es6_A           32 KNIPMWLKSL-RLHKYSDALSG--TPWIELIYLDDETL-EKKGVLALGARRKLLKAFGIVIDYK   91 (101)
T ss_dssp             TCHHHHHHTT-TCCCTHHHHTT--SCHHHHTTCCHHHH-HHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHc-cCcchHHHHcc--CCHHHHHhcCHHHH-HHcCCccHhHHHHHHHHHHHHHHHH
Confidence            5999999998 99999999966  68899999999999 589996 999999999999999865

>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A

Probab=98.49  E-value=3.4e-07  Score=65.75  Aligned_cols=60  Identities=18%  Similarity=0.241  Sum_probs=53.9

Q ss_pred             HHHHHHHhCCCChHHHHHHhhcC-CChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         128 EVCDFIRNLPGCAEYVEDFAMQE-IDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       128 dV~ewL~sl~Gc~eyaelFrene-IDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      -|.+||..+ +|+.|.+.|...+ .+-+.+..|+.+|| ..|||++|++.||++.|..||...
T Consensus         6 sv~~WLd~i-~m~~Y~d~F~~~g~~s~~~v~~lt~eDL-~~~GIt~ghqkkIl~siq~lr~~~   66 (69)
T 2y9u_A            6 SIVSFLARL-GCSSCLDYFTTQGLTTIYQIEHYSMDDL-ASLKIPEQFRHAIWKGILDHRQLH   66 (69)
T ss_dssp             BHHHHHHTT-TCGGGHHHHHTTTCCBHHHHTTCCHHHH-HHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHc-CChHHHHHHHHcCCCcHHHHHHcCHHHH-HhcCCChhhHHHHHHhHHHHHhcc
Confidence            378999998 8999999998766 56789999999999 589999999999999999999864

>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}

Probab=98.43  E-value=1.7e-07  Score=70.51  Aligned_cols=69  Identities=17%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHHH---HHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEYV---EDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~eya---elFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+.++..||.+||..||.-. + .+|.   -.|..++|||.+|+.|+++|++..++. .|+.  |+..++.||...
T Consensus         7 ~l~~DP~~WS~~~V~~WL~w~-~-~ef~L~~i~~~~f~mdGk~Lc~Lt~edF~~~~p~-~Gdi--L~~hL~~Lk~~~   78 (93)
T 2qar_B            7 HLRLQPIYWSRDDVAQWLKWA-E-NEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPH-SGDV--LYELLQHILKQR   78 (93)
T ss_dssp             GGCSCGGGCCHHHHHHHHHHH-H-HHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHCTT-THHH--HHHHHHHHHHHH
T ss_pred             CCCCChhhCCHHHHHHHHHHH-H-HhcCCCCcchhcCCCCHHHHHcCCHHHHhhhCCc-chHH--HHHHHHHHHHhc
Confidence            346789999999999999543 1 3332   225677899999999999999766664 5776  899999997654

>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}

Probab=98.41  E-value=4.5e-07  Score=67.16  Aligned_cols=61  Identities=20%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             HHHHHHHhCCCChHHHHHHhhcC-CChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhc
Q psy2001         128 EVCDFIRNLPGCAEYVEDFAMQE-IDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       128 dV~ewL~sl~Gc~eyaelFrene-IDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~  190 (202)
                      -|.+||..+ +|+.|.+.|...+ .+-+.+..|+.+|| ..|||.+|++.||++.|..||....
T Consensus         8 SV~~WLd~i-~m~~Y~d~F~~~G~~sl~~V~~lt~eDL-~~mGIt~gHqkkIl~siq~lr~~~~   69 (82)
T 2y9t_A            8 SIVSFLARL-GCSSCLDYFTTQGLTTIYQIEHYSMDDL-ASLKIPEQFRHAIWKGILDHRQLHE   69 (82)
T ss_dssp             BHHHHHHHH-TCGGGHHHHHTTTCCBSGGGTTCCHHHH-HHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHc-CchHHHHHHHHcCCCcHHHHHhcCHHHH-HhcCCChhhHHHHHhhHHHHHHHhc
Confidence            488999998 8999999998766 56789999999999 5899999999999999999998763

>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13

Probab=98.34  E-value=3.8e-07  Score=76.06  Aligned_cols=59  Identities=19%  Similarity=0.393  Sum_probs=53.5

Q ss_pred             HHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         127 TEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       127 edV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      .+|..||+++ ++.+|++.|..  ++=+.++.||++||. .+|+..|.|.||+.+|++||.+.
T Consensus         8 ~dV~~WLksL-rLhKY~~~F~~--~~~e~~~~LTdedL~-~~GVT~GARrKIL~aIq~Lrer~   66 (173)
T 1oxj_A            8 SGIGLWLKSL-RLHKYIELFKN--MTYEEMLLITEDFLQ-SVGVTKGASHKLALCIDKLKERA   66 (173)
T ss_dssp             TTHHHHHHHT-TCGGGGGGGTT--CCHHHHTTCCHHHHH-HTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHc-ccchhHHHHcc--CCHHHHHhcCHHHHH-HCCCchHHHHHHHHHHHHHHHHh
Confidence            3899999998 99999999965  778899999999995 79998899999999999998765

>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A

Probab=98.13  E-value=1.8e-06  Score=64.54  Aligned_cols=68  Identities=18%  Similarity=0.325  Sum_probs=50.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHHH---HHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEYV---EDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~eya---elFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..+.++..||.++|..||.-.  ..+|.   -.|...+|||++|+.|+++|+++.++. .|.  .|+..+..|+..
T Consensus         7 ~l~~DP~~WS~~~V~~WL~w~--~~ef~L~~~~~~~f~mdGk~Lc~Ls~edF~~~~p~-~Gd--iL~~hL~~l~~~   77 (89)
T 1ji7_A            7 HLRLQPIYWSRDDVAQWLKWA--ENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPH-SGD--ELYELLQHILKQ   77 (89)
T ss_dssp             GGCSCGGGCCHHHHHHHHHHH--HHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCTT-THH--HHHHHHHHHHHC
T ss_pred             CCCCChhhCCHHHHHHHHHHH--HHhcCCCCCchhcCCCCHHHHHcCCHHHHHhHcCC-chH--HHHHHHHHHHhC
Confidence            457889999999999999543  22332   235567899999999999999866664 355  466777777764

>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1

Probab=98.10  E-value=2.6e-06  Score=62.37  Aligned_cols=65  Identities=17%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHH-HH----HHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEY-VE----DFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM  185 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~ey-ae----lFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~L  185 (202)
                      ..+.++..||.++|..||.-.  ..+| .+    .|...++||++|..|+++|+....+ ..|+.  |+..++.+
T Consensus         6 ~i~~dP~~Ws~~~V~~WL~w~--~~e~~l~l~~~~~~~f~m~G~~Lc~ls~edF~~~~p-~~Gdi--L~~hL~~~   75 (82)
T 1sv0_C            6 GLPLDPRDWTRADVWKWLINM--AVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVP-VGGKM--LYRDFRVR   75 (82)
T ss_dssp             SSBSSGGGCCHHHHHHHHHHH--HHHHTCCCCTHHHHTCCSCHHHHHHCCHHHHHHHCT-TTHHH--HHHHHHHH
T ss_pred             cCCCChhhCCHHHHHHHHHHH--HHHhCCCCCCCccccCCCCHHHHHhCCHHHHHhhCC-CchHH--HHHHHHHH
Confidence            347889999999999999632  2233 11    2556689999999999999986565 66776  88888844

>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}

Probab=97.90  E-value=1.5e-05  Score=58.15  Aligned_cols=47  Identities=13%  Similarity=0.401  Sum_probs=43.8

Q ss_pred             ChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001         139 CAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR  186 (202)
Q Consensus       139 c~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr  186 (202)
                      |..|+..|.++.||-..|..|+.+.| +.|||+.|+-++|++++++.-
T Consensus        19 c~rYA~~F~~~ri~e~mL~Dl~~~~L-r~LGi~eGDIIrVmk~l~~k~   65 (72)
T 3idw_A           19 CQRYTINFDREQLTEDMMPDINNSML-RTLGLREGDIVRVMKHLDKKF   65 (72)
T ss_dssp             HHHHHHHHHHTTCCGGGGGGCCHHHH-HHTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCCHHHHhhCCHHHH-HHcCCchhhHHHHHHHHHHHh
Confidence            66799999999999999999999999 589999999999999998873

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=97.82  E-value=2.5e-05  Score=70.68  Aligned_cols=64  Identities=17%  Similarity=0.183  Sum_probs=58.0

Q ss_pred             CHHHHH-HHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001         125 TVTEVC-DFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       125 TvedV~-ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~  189 (202)
                      +..=|. .||..| |+.+|.+.|.++.|||..|-.|+.+||...||| ...|+.+|...|..||...
T Consensus       161 dh~WV~~~WL~dI-GLpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr~~~  226 (334)
T 3tac_B          161 NHEWIGNEWLPSL-GLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLN  226 (334)
T ss_dssp             CHHHHHHTHHHHT-TCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccCcchhhhcccc-ChHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhhhcC
Confidence            344567 799998 999999999999999999999999999879999 8999999999999998654

>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.57  E-value=0.00016  Score=55.48  Aligned_cols=63  Identities=17%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             CCHHHHHHHHHhCCCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhccCC
Q psy2001         124 WTVTEVCDFIRNLPGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGAA  193 (202)
Q Consensus       124 WTvedV~ewL~sl~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~~~~  193 (202)
                      =+.+||..||.. ++|..| ++.|  ..++|.-|+.|+.++|...+|    ...|+|+.|.--|.....+.
T Consensus        34 Ssp~EV~~WL~~-kgFS~~tv~~L--g~ltGaqLl~Ltk~eL~~vCg----EG~RlysqL~vqk~~le~~~   97 (99)
T 2e8m_A           34 STPEDVKTWLQS-KGFNPVTVNSL--GVLNGAQLFSLNKDELRTVCP----EGARVYSQITVQKAALSGPS   97 (99)
T ss_dssp             CCTTHHHHHHHH-HTCCHHHHHHT--SSSCHHHHHHCCHHHHHHHCT----THHHHHHHHHHHHHHHSSSC
T ss_pred             CCHHHHHHHHHH-cCCCHHHHHHH--cCCCHHHHHcCCHHHHHHHCC----chHHHHHHHHHHHHHHhhcc
Confidence            468999999998 599997 8988  479999999999999987776    88899999988887765443

>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.52  E-value=4e-05  Score=58.10  Aligned_cols=72  Identities=17%  Similarity=0.357  Sum_probs=50.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhh-cCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhcc
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAM-QEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEG  191 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFre-neIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~~  191 (202)
                      ..+.++..||.++|.+||.=.   .++... + +.. +.|||+.|..|+++|+.+..+...|+.  |+..+..||...-+
T Consensus        19 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v-~-~~~F~~m~G~~LC~ls~edF~~~~~~~~Gdi--L~~hL~~Lk~~~s~   94 (98)
T 1x66_A           19 IVPADPTLWTQEHVRQWLEWAIKEYSLMEI-D-TSFFQNMDGKELCKMNKEDFLRATTLYNTEV--LLSHLSYLRESSSG   94 (98)
T ss_dssp             CCCSSGGGCCTTHHHHHHHHHHHHTTCCSC-C-GGGGTTCCHHHHHHCCHHHHHTTSCHHHHHH--HHHHHHHHHTCSSC
T ss_pred             CCCCChhhcCHHHHHHHHHHHHHhcCCCCC-C-hhhCCCCCHHHHHcCCHHHHHHHcCCCchHH--HHHHHHHHHhcCCC
Confidence            557899999999999999422   133221 1 333 379999999999999864333234544  89999999986443

>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}

Probab=97.38  E-value=0.00046  Score=52.93  Aligned_cols=60  Identities=13%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             CCHHHHHHHHHhCCCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         124 WTVTEVCDFIRNLPGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       124 WTvedV~ewL~sl~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      =+.+||..||.. +||..| ++.|  ..++|.-|+.|+.++|...+|   ....|+|+.|.--|...
T Consensus        24 Ssp~EV~~WL~~-kgFS~~tv~~L--g~ltGaqLf~Ltk~eL~~vCg---~EG~RlysqL~~qk~~l   84 (99)
T 1wwu_A           24 SGPDEVRAWLEA-KAFSPRIVENL--GILTGPQLFSLNKEELKKVCG---EEGVRVYSQLTMQKAFL   84 (99)
T ss_dssp             CCHHHHHHHHHH-HTCCTTHHHHT--TSSCHHHHHTCCHHHHHHHHT---TTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-cCCCHHHHHHH--cCCCHHHHHcCCHHHHHHHCc---chhHHHHHHHHHHHHHH
Confidence            469999999998 599997 8988  479999999999999988887   66778888888777764

>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.36  E-value=0.00026  Score=53.46  Aligned_cols=73  Identities=19%  Similarity=0.316  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhccC
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGA  192 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~~~  192 (202)
                      ..+.++..||.++|..||.-.   .++.. .+ +....+||++|..|+++|+....+ ..|+  .|+.++..||....+.
T Consensus        19 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~-i~-~~~f~m~G~~LC~lskedF~~~~p-~~Gd--iL~~hL~~Lk~~~s~~   93 (96)
T 2dkx_A           19 NITADPMDWSPSNVQKWLLWTEHQYRLPP-MG-KAFQELAGKELCAMSEEQFRQRSP-LGGD--VLHAHLDIWKSAASGP   93 (96)
T ss_dssp             TCCSCGGGCCSSTHHHHHHHHHHHTTCCC-CH-HHHSSCCHHHHHHSCHHHHHHHCS-SSTH--HHHHHHHHHHHHHSCS
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHhcCCCC-CC-cccCCCCHHHHHhCCHHHHHHHcC-cchH--HHHHHHHHHHhccCCC
Confidence            568899999999999999432   13332 22 344569999999999999976444 3454  5899999999887665


Q ss_pred             C
Q psy2001         193 A  193 (202)
Q Consensus       193 ~  193 (202)
                      +
T Consensus        94 ~   94 (96)
T 2dkx_A           94 S   94 (96)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1

Probab=97.19  E-value=0.00053  Score=51.32  Aligned_cols=68  Identities=15%  Similarity=0.353  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+.++..||.++|.+||.=.   .++...  .|..-.+||+.|..|+++|+....+  .|+  .|+..+..||...
T Consensus        18 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v--~~~~f~m~G~~LC~ls~edF~~~~p--~Gd--iL~~hL~~L~k~~   88 (91)
T 1sxd_A           18 GIPYDPIHWSTDQVLHWVVWVMKEFSMTDI--DLTTLNISGRELCSLNQEDFFQRVP--RGE--ILWSHLELLRKYV   88 (91)
T ss_dssp             TCCSSGGGCCHHHHHHHHHHHHHHTTCCCS--CSGGGCSCHHHHHHSCHHHHHHHCT--TCH--HHHHHHHHHHHTT
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHccCCCCC--ChhhCCCCHHHHHcCCHHHHHHHCC--Cch--HHHHHHHHHHHhh
Confidence            557899999999999999422   133221  1334489999999999999986554  365  7889999998754

>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A

Probab=97.18  E-value=0.00066  Score=50.22  Aligned_cols=69  Identities=17%  Similarity=0.275  Sum_probs=49.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+.++..||.++|.+||.=.   .++...  .|..-.+||+.|..|+++|+....+ ..|  -.|+..+..||...
T Consensus         5 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i--~~~~F~m~G~~LC~ls~edF~~~~p-~~G--diL~~hL~~Lk~~~   76 (85)
T 1sv0_A            5 SLPSDPRLWSREDVLVFLRFCVREFDLPKL--DFDLFQMNGKRLCLLTRADFGHRCP-GAG--DVLHNVLQMLIIES   76 (85)
T ss_dssp             TSCSSGGGCCHHHHHHHHHHHHHHTTCCCC--CGGGGCSCHHHHTTCCHHHHHHHST-TTH--HHHHHHHHHHHHHH
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHccCCCCC--ChhhCCCCHHHHHcCCHHHHHHHcC-Cch--HHHHHHHHHHHHhh
Confidence            347889999999999999421   133221  1233369999999999999986555 344  56788888887754

>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=0.0011  Score=49.88  Aligned_cols=69  Identities=22%  Similarity=0.299  Sum_probs=49.0

Q ss_pred             CCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         117 SLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       117 ~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ...++..||.++|.+||.=.   .++.--.-.|..-+|||++|-.|+++|++...+. .|  --|+..+..||..
T Consensus        20 ~~~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~mskedF~~~~p~-~G--diL~~hL~~L~~~   91 (92)
T 2e8p_A           20 LGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP-LG--DQLHAQLRDLTSS   91 (92)
T ss_dssp             SSSCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHHHHHHSGG-GH--HHHHHHHHHHHHC
T ss_pred             cCCChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHHHHHHcCC-cH--HHHHHHHHHHHhc
Confidence            36899999999999999422   1221001114445899999999999999866554 55  4678888888863

>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1

Probab=96.86  E-value=0.00052  Score=51.94  Aligned_cols=70  Identities=14%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhc-CCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         115 TPSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQ-EIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       115 ~~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFren-eIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      -..+.++..||.++|..||.=.   .++.. .+ +..- .+||+.|-.|+++|+....+...|+  .|+.++..||..
T Consensus        21 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~-i~-~~~F~~m~G~~LC~lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~   94 (97)
T 1sxe_A           21 VIVPADPTLWSTDHVRQWLEWAVKEYGLPD-VN-ILLFQNIDGKELCKMTKDDFQRLTPSYNAD--ILLSHLHYLRET   94 (97)
T ss_dssp             SSSCSSTTSCCHHHHHHHHHHHHHHHTCSS-CC-GGGSTTCCHHHHTTCCHHHHTTTSCHHHHH--HHHHHHHHHTTS
T ss_pred             hcCCcchhccCHHHHHHHHHHHHHhcCCCC-CC-HHhcCCCCHHHHHhCCHHHHHHHcCCCchH--HHHHHHHHHHhC
Confidence            3567899999999999999432   12221 11 3444 7999999999999986433323444  468888888764

>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.78  E-value=0.00067  Score=53.91  Aligned_cols=69  Identities=14%  Similarity=0.327  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhc-CCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQ-EIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFren-eIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..+.++..||.++|..||.=.   .++.. .+ +..- .|||+.|..|+++|+....+.-.|+.  |+..+..||..
T Consensus        33 ~IP~DP~~WS~~~V~~WL~Wa~~ef~L~~-id-~~~Fq~mnGk~LC~LskeDF~~~~p~~~GDi--L~~hL~~Lr~~  105 (128)
T 2ytu_A           33 IVPADPTLWTQEHVRQWLEWAIKEYSLME-ID-TSFFQNMDGKELCKMNKEDFLRATTLYNTEV--LLSHLSYLRES  105 (128)
T ss_dssp             SCCSCGGGCCTTHHHHHHHHHHHHTCCCS-CC-CGGGSSCCTTHHHHCCHHHHHHHSCHHHHHH--HHHHHHHHHHH
T ss_pred             cCCcchhhCCHHHHHHHHHHHHHhcCCCC-CC-hHhCCCCCHHHHHcCCHHHHHHHcCCCchHH--HHHHHHHHHhc
Confidence            557899999999999999432   12321 11 3333 79999999999999975554335655  78999999987

>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A

Probab=96.78  E-value=0.0025  Score=47.25  Aligned_cols=59  Identities=22%  Similarity=0.375  Sum_probs=49.8

Q ss_pred             HHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         129 VCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       129 V~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      |+.||..+ ||..|++.|.++++. -..|=.++.+|| ..|.|+-.+|.||+..+.++|+..
T Consensus         9 v~s~Lt~L-Gc~~~Id~F~~qgl~~i~qL~~~~ledL-~~mkIpe~~R~kIWk~l~e~~q~~   68 (80)
T 1dxs_A            9 LVSFLTGL-GCPNCIEYFTSQGLQSIYHLQNLTIEDL-GALKIPEQYRMTIWRGLQDLKQGH   68 (80)
T ss_dssp             HHHHHHHT-TCTTSHHHHHTTTCCCHHHHHTCCHHHH-HHTTCCTTTHHHHHHHHHHC----
T ss_pred             HHHHHHhc-CchHHHHHHHHcCcccchhhccCCHHHH-HhCCCCHHHHHHHHhhHHHhcccc
Confidence            78999998 999999999888764 567889999999 589999999999999999998754

>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*

Probab=96.59  E-value=0.0012  Score=50.92  Aligned_cols=69  Identities=20%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..+.++..||.++|..||.=.   .++...  .|..-.+||+.|..|+.+|+....+.-.|  -.|+.++..||..
T Consensus        36 ~ip~DP~~WS~~~V~~WL~W~~~ef~L~~v--~~~~F~m~G~~LC~ls~edF~~~~p~~~G--diL~~hL~~Lk~~  107 (110)
T 2jv3_A           36 GIPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMSGAALCALGKECFLELAPDFVG--DILWEHLEILQKE  107 (110)
T ss_dssp             TCCSSSTTCCHHHHHHHHHHHHHHHTCCCC--CTTTTCCCHHHHHHTHHHHHHHHSCHHHH--HHHHHHHHHHHHT
T ss_pred             CCCCChHhCCHHHHHHHHHHHHHhcCCCCC--ChhcCCCCHHHHHhCCHHHHHHHcCCCcH--HHHHHHHHHHHHh
Confidence            457899999999999999422   122211  12334799999999999999754432234  4578899988874

>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}

Probab=95.71  E-value=0.014  Score=49.69  Aligned_cols=68  Identities=18%  Similarity=0.281  Sum_probs=46.9

Q ss_pred             CCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         117 SLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       117 ~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      .+.+++.||.++|.+||.-.   .++...  .|..-.+||+.|..|+.+|++.... ..|  -.|+.++..|+...
T Consensus         8 ~p~dP~~Wt~~~V~~Wl~w~~~~f~l~~~--~~~~f~~~G~~Lc~m~~~~F~~~~p-~~G--~iL~~hl~~l~k~~   78 (241)
T 2qb0_B            8 LRLQPIYWSRDDVAQWLKWAENEFSLRPI--DSNTFEMNGKALLLLTKEDFRYRSP-HSG--DVLYELLQHILKQA   78 (241)
T ss_dssp             GGSCGGGCCHHHHHHHHHHHHHHTTCSCC--CTTTTCSCHHHHTTCCHHHHHHHCT-TTH--HHHHHHHHHHHHTC
T ss_pred             CCCChhhCCHHHHHHHHHHHHHhcCCCCC--CHHhcCCChHHHHHcCHHHHHhhcC-Ccc--hhhHHHHHHHHHhh
Confidence            46889999999999999532   122211  1333359999999999999975433 345  44578888776554

>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A

Probab=82.90  E-value=0.69  Score=34.12  Aligned_cols=26  Identities=23%  Similarity=0.616  Sum_probs=22.4

Q ss_pred             CHHHHHHHHHhCCCChHHHHHHhhcCC
Q psy2001         125 TVTEVCDFIRNLPGCAEYVEDFAMQEI  151 (202)
Q Consensus       125 TvedV~ewL~sl~Gc~eyaelFreneI  151 (202)
                      ...+.|.||+.. ||.+|++.|.+..+
T Consensus        20 eA~eAC~WLRaa-GFPQYAqlyed~qF   45 (81)
T 2h80_A           20 EAKEACDWLRAA-GFPQYAQLYEDSQF   45 (81)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHTTTTTCC
T ss_pred             HHHHHHHHHHHc-CCcHHHHHhhcccc
Confidence            467899999996 99999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1kw4a_	70	a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaste	7e-22
d1pk3a1	63	a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly	2e-17
d1wwva1	78	a.60.1.2 (A:8-85) Connector enhancer of kinase sup	1e-13
d2f3na1	64	a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat	1e-13
d2d8ca1	85	a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {	3e-09
d1b0xa_	72	a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mou	1e-07
d1v38a_	78	a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (M	1e-07
d1b4fa_	74	a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)	6e-06
d1x40a1	78	a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human	3e-04
d1oxja1	62	a.60.1.2 (A:594-655) RNA-binding protein Smaug {Dr	0.001
d1ow5a_	60	a.60.1.2 (A:) Serine/threonine-protein kinase ste1	0.004

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]} Length = 70

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

 Score = 82.6 bits (204), Expect = 7e-22
 Identities = 42/68 (61%), Positives = 54/68 (79%)

Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKI 178
           P    W+V +V +FIR LPGC +YV+DF  QEIDGQAL+ L+ KHL+ AM MKLGPALKI
Sbjct: 3   PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKI 62

Query: 179 VAKIDSMR 186
           VAK++S++
Sbjct: 63  VAKVESIK 70

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 63

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 70.8 bits (173), Expect = 2e-17
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 124 WTVTEVCDFIRNLPGC-AEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
           WT+ EV  +I +     A + + F   EIDG+AL+ L ++ +M+ M +KLGPALKI   +
Sbjct: 1   WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLV 60

Query: 183 DSM 185
           + +
Sbjct: 61  NKV 63

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 1e-13
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
            WT  +V  ++R L   +     F   ++ G+ L+ L  + L       LG    I+  +
Sbjct: 6   TWTPGKVATWLRGLD-DSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGV 64

Query: 183 DSMRQAAEG 191
           + ++  +  
Sbjct: 65  EQLQALSSR 73

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]} Length = 64

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (148), Expect = 1e-13
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
           W+  +V D++ ++    E+ + F   EI+G  L  L  +  +E    ++G    I   + 
Sbjct: 4   WSKFDVGDWLESI-HLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALR 62

Query: 184 SM 185
            +
Sbjct: 63  QL 64

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAM--SMKLG 173
            ++   + W+  +V D++       EY E    +   GQ L+ L  +   +     +   
Sbjct: 6   RTMKEVVYWSPKKVADWLLENA-MPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSD 62

Query: 174 PALKIVAKIDSMRQAAE 190
              +++  I++++    
Sbjct: 63  NGQRLLDMIETLKMEHH 79

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKID 183
            V  V D+++ +     Y ++F        +A++ +    L       +    KI++ + 
Sbjct: 3   AVVSVGDWLQAI-KMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQ 61

Query: 184 SMRQAAEGAAG 194
           +MR   +   G
Sbjct: 62  AMRTQMQQMHG 72

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALML-LQAKHLMEAMSMKLGPALKIVAK 181
           +     + +F+  +    EY     +   +    +  ++  HL+E          ++++ 
Sbjct: 9   RENHQTIQEFLERI-HLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSA 67

Query: 182 IDSMRQ 187
            +S+  
Sbjct: 68  AESLLS 73

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 6e-06
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIV 179
           P   +   V +++  +    +Y E FA         +  +  + ++       G   KI+
Sbjct: 1   PDYTSFNTVDEWLEAI-KMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKIL 59

Query: 180 AKIDSMRQ 187
             I  MR 
Sbjct: 60  NSIQVMRA 67

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 7/65 (10%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 127 TEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKIDSM 185
            ++ DF+ ++    +Y+  F        +    +    L +      G   +I+ ++  +
Sbjct: 9   VDIKDFLMSI-NLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQII 67

Query: 186 RQAAE 190
               +
Sbjct: 68  LSKMQ 72

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]} Length = 62

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 9/64 (14%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
             ++ +  ++++L    +Y+E F  + +  + ++L+     ++++ +  G + K+   ID
Sbjct: 3   VGMSGIGLWLKSL-RLHKYIELF--KNMTYEEMLLITEDF-LQSVGVTKGASHKLALCID 58

Query: 184 SMRQ 187
            +++
Sbjct: 59  KLKE 62

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.7 bits (74), Expect = 0.004
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 129 VCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186
           V  F+  + GC +Y++ F    +   + +  L    L+     K+G  LKI+ K  S +
Sbjct: 3   VQLFLEEI-GCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQ 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	99.82
d1pk3a1	63	Polycomb protein Scm {Fruit fly (Drosophila melano	99.81
d1wwva1	78	Connector enhancer of kinase suppressor of Ras 1,	99.72
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	99.71
d2d8ca1	85	Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculu	99.66
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	99.53
d1v38a_	78	Sam-domain protein samsn-1 {Mouse (Mus musculus) [	99.49
d1ucva_	81	Ephrin type-A receptor 8, C-terminal domain {Human	99.49
d1ow5a_	60	Serine/threonine-protein kinase ste11 {Baker's yea	99.48
d1b0xa_	72	EphA4 receptor tyrosine kinases {Mouse (Mus muscul	99.47
d1x40a1	78	Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta	99.46
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	99.43
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	99.17
d1z1va1	70	Ste50p, N-terminal domain {Baker's yeast (Saccharo	98.4
d1sv0a_	77	Ets DNA-binding protein pokkuri (Yan) {Fruit fly (	97.36
d1rg6a_	67	C-terminal domain of p63 {Human (Homo sapiens) [Ta	97.23
d1sxda_	91	GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 1	97.18
d1sv0c_	82	Modulator of the activity of Ets (MAE, CG15085-PA)	97.03
d1ji7a_	77	Etv6 transcription factor pointed domain (Tel SAM)	96.96
d2jv3a_	110	Ets-1 transcription factor pointed domain {Mouse (	96.72
d1sxea_	97	Transcriptional regulator ERG {Human (Homo sapiens	96.38

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.82  E-value=7.6e-21  Score=132.58  Aligned_cols=68  Identities=62%  Similarity=1.093  Sum_probs=63.9

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR  186 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr  186 (202)
                      +.+..||++||++||+++.||++|++.|++|+|||.+|+.||+++|.+.+++++|+|++|+++|++||
T Consensus         3 ~pv~~Ws~~dV~~wL~~~~~~~~y~~~F~~~~IdG~~Ll~Lt~~~L~~~~~~~~g~r~~i~~~I~~Lk   70 (70)
T d1kw4a_           3 PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIK   70 (70)
T ss_dssp             CCGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC
T ss_pred             CchhcCCHHHHHHHHHhCCCcHHHHHHHHHcCccHHHHHHccHHHHHHHcCCchHHHHHHHHHHHHhC
Confidence            56889999999999999767999999999999999999999999998778889999999999999986

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=1.2e-20  Score=129.61  Aligned_cols=62  Identities=39%  Similarity=0.635  Sum_probs=58.7

Q ss_pred             CCHHHHHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHH
Q psy2001         124 WTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM  185 (202)
Q Consensus       124 WTvedV~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~L  185 (202)
                      ||++||++||+++ .++++|++.|++|+|||.+|+.||+++|.+.+|+++|||+||+++|++|
T Consensus         1 Ws~~dV~~wL~~~~~~~~~y~~~F~~~~IdG~~Ll~Lt~edL~~~~~~~~G~r~ki~~~I~~L   63 (63)
T d1pk3a1           1 WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLVNKV   63 (63)
T ss_dssp             CCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHccccHHHHHHHHHHhCcCHHHHHhcCHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            9999999999987 3679999999999999999999999999888999999999999999986

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.8e-19  Score=124.63  Aligned_cols=71  Identities=20%  Similarity=0.310  Sum_probs=66.0

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhcc
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEG  191 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~  191 (202)
                      ..|..||++||++||..+ |+++|++.|++|+|||..|+.|++++|. .||| ++|+|++|+++|+.||.....
T Consensus         2 epv~~Wt~~~V~~WL~~~-gl~~y~~~F~~~~I~G~~Ll~L~~~dL~-~lgI~~~ghr~~il~~i~~Lk~~~~~   73 (78)
T d1wwva1           2 EPVETWTPGKVATWLRGL-DDSLQDYPFEDWQLPGKNLLQLCPQSLE-ALAVRSLGHQELILGGVEQLQALSSR   73 (78)
T ss_dssp             CCTTTCCTTTHHHHHHHH-CHHHHTSCHHHHCCCHHHHTTCCTTTGG-GGTCCCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CChhhCCHHHHHHHHHHc-chHHHHHHHHHcCCCcHHHHHhhHHHHH-HhCCCCHHHHHHHHHHHHHHHHhccc
Confidence            468899999999999997 9999999999999999999999999995 7999 899999999999999987643

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.1e-18  Score=116.46  Aligned_cols=62  Identities=19%  Similarity=0.390  Sum_probs=58.6

Q ss_pred             CCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHH
Q psy2001         122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSM  185 (202)
Q Consensus       122 ~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~L  185 (202)
                      ..||++||++||.++ |+++|++.|++|+|||..|+.||++|| +.||| +.|+|.+|+.+|++|
T Consensus         2 ~~Ws~~~V~~wL~~~-gl~~y~~~F~~~~i~g~~L~~l~~~dL-~~lGi~~~g~r~~il~~i~~L   64 (64)
T d2f3na1           2 QLWSKFDVGDWLESI-HLGEHRDRFEDHEIEGAHLPALTKEDF-VELGVTRVGHRENIERALRQL   64 (64)
T ss_dssp             GGCCHHHHHHHHHHT-TCGGGHHHHHHTTCCGGGGGGCCHHHH-HHTTCCCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHC-CCHHHHHHHHHCCCcHHHhhcCCHHHH-HHcCCCCHHHHHHHHHHHHhC
Confidence            479999999999997 999999999999999999999999999 58999 899999999999875

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.4e-17  Score=119.68  Aligned_cols=72  Identities=15%  Similarity=0.372  Sum_probs=65.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHH-hhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLME-AMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k-~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ....+|..||++||++||..+ ||++|++.|  ++|||.+|+.||++||.+ .||| +.|+|.+|+.+|+.||....
T Consensus         6 ~~~~~V~~Ws~~dV~~WL~~~-gl~~Y~~~F--~~IdG~~Ll~Lt~~dL~~~~Lgi~~~~~rk~il~~I~~Lk~~~~   79 (85)
T d2d8ca1           6 RTMKEVVYWSPKKVADWLLEN-AMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHH   79 (85)
T ss_dssp             SCCSCCSSCCTTHHHHHHHHT-TCTTTTTTT--TTCCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSC
T ss_pred             cccCChhhCCHHHHHHHHHHC-cHHHHHHHH--HhccHHHHHHCCHHHHhhcCccCcChhHHHHHHHHHHHHHHHhh
Confidence            346789999999999999997 999999999  789999999999999964 3999 79999999999999998764

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-15  Score=105.43  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             CCCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       122 ~~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ..|+..+|.+||.++ |+++|++.|++|+||| +.|..|++++| +.||| +.|+|.||+++|+.||....
T Consensus         2 d~~~~~~V~~WL~~l-gL~~Y~~~F~~~~idg~~~l~~l~~~~L-~~lGI~~~ghr~ril~~i~~Lr~~~~   70 (74)
T d1b4fa_           2 DYTSFNTVDEWLEAI-KMGQYKESFANAGFTSFDVVSQMMMEDI-LRVGVTLAGHQKKILNSIQVMRAQMN   70 (74)
T ss_dssp             CCCCCSSHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccHHHHHHHC-CCHHHHHHHHHcCcCcHHHHHhCCHHHH-HHcCCCChhHHHHHHHHHHHHHHHHH
Confidence            457778899999998 9999999999999999 77888999999 58999 89999999999999998753

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.3e-14  Score=102.98  Aligned_cols=69  Identities=10%  Similarity=0.219  Sum_probs=62.6

Q ss_pred             CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001         118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~  188 (202)
                      .++...|++++|.+||.++ |+++|++.|.+|+||| +.|..|+++|| +.||| +.|+|+||+++|+.|+..
T Consensus         4 ~~s~~~~~~~~V~~WL~~l-gL~~Y~~~F~~~g~~~~~~l~~l~~~dL-~~lGI~~~~hr~kil~ai~~L~~~   74 (78)
T d1v38a_           4 GSSGRRENHQTIQEFLERI-HLQEYTSTLLLNGYETLDDLKDIKESHL-IELNIADPEDRARLLSAAESLLSG   74 (78)
T ss_dssp             SCCCCCSSCCBHHHHHHTT-TCGGGHHHHHHHTCCBHHHHTTCCHHHH-HHTTTCCHHHHHHHHHHHHHHHSC
T ss_pred             cccCCCCCHHHHHHHHHHC-CHHHHHHHHHHcCccchHHHccCCHHHH-hHcCCCCHHHHHHHHHHHHHhhcC
Confidence            4556779999999999998 9999999999999998 66778999999 58999 799999999999999863

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.6e-14  Score=101.52  Aligned_cols=70  Identities=21%  Similarity=0.443  Sum_probs=63.2

Q ss_pred             HHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccCCCCCCCC
Q psy2001         128 EVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGAAGAPPPA  199 (202)
Q Consensus       128 dV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~~~~~~~~  199 (202)
                      .|.+||+++ |+++|++.|.+|+||| +.|+.|+++|| +.||| +.|+|.||+++|+.||.......+..|.+
T Consensus         9 sV~~WL~~l-gL~qY~~~F~~~gi~~~~~L~~lt~~dL-~~lGI~~~ghr~kIl~~i~~Lk~~~~~~~~~~PsS   80 (81)
T d1ucva_           9 TVGDWLDSI-RMGRYRDHFAAGGYSSLGMVLRMNAQDV-RALGITLMGHQKKILGSIQTMRAQLTSTQGSGPSS   80 (81)
T ss_dssp             BHHHHHHHT-TCGGGHHHHHHTTCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHSCCSSCSSCC
T ss_pred             cHHHHHHHC-ccHHHHHHHHHcCCchHHHHHhCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence            488999998 9999999999999998 78999999999 58999 79999999999999999887777766653

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1.2e-14  Score=98.84  Aligned_cols=57  Identities=28%  Similarity=0.536  Sum_probs=53.6

Q ss_pred             HHHHHHHhCCCChHHHHHHhhcC-CChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHH
Q psy2001         128 EVCDFIRNLPGCAEYVEDFAMQE-IDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMR  186 (202)
Q Consensus       128 dV~ewL~sl~Gc~eyaelFrene-IDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr  186 (202)
                      +|.+||.++ ||++|++.|.+|+ |||+.|+.||++|| +.||| ++|+|.||+++|++||
T Consensus         2 ~V~~wL~~l-gL~~Y~~~F~~~~~i~~~~l~~l~~~dL-~~lGI~~~ghr~ril~~i~~Lk   60 (60)
T d1ow5a_           2 FVQLFLEEI-GCTQYLDSFIQCNLVTEEEIKYLDKDIL-IALGVNKIGDRLKILRKSKSFQ   60 (60)
T ss_dssp             HHHHHHHHH-SCTHHHHHHHHHTCCCHHHHHHCCHHHH-HHHTCCCHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHC-cCHHHHHHHHHcCCCcHHHHHhCCHHHH-HHcCCCCHHHHHHHHHHHHHhC
Confidence            589999998 9999999999976 99999999999999 58999 8999999999999986

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2e-14  Score=100.68  Aligned_cols=66  Identities=17%  Similarity=0.367  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccC
Q psy2001         125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGA  192 (202)
Q Consensus       125 TvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~  192 (202)
                      ++..|++||+++ ||++|++.|.+|+||| +.|+.|+++|| +.||| ++|+|.||+++|+.||......
T Consensus         3 ~v~sV~~WL~~l-gL~~Y~~~F~~~~~~~~~~l~~l~~~dL-~~lGI~~~ghr~ki~~ai~~Lr~~~~~~   70 (72)
T d1b0xa_           3 AVVSVGDWLQAI-KMDRYKDNFTAAGYTTLEAVVHMSQDDL-ARIGITAITHQNKILSSVQAMRTQMQQM   70 (72)
T ss_dssp             SSCCHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             chhhHHHHHHHC-CcHHHHHHHHHcCCCcHHHHHHCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            356799999998 9999999999999997 67888999999 58999 7999999999999999876543

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.8e-14  Score=100.49  Aligned_cols=69  Identities=12%  Similarity=0.263  Sum_probs=62.2

Q ss_pred             CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001         119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ++++.|+. ||.+||.++ ||++|.+.|.++++++ +.|+.|+++|| +.||| +.|+|.||+++|+.||.+..
T Consensus         2 s~~se~~~-dV~~WL~~l-gL~~Y~~~F~~~g~~~~~~l~~l~~~dL-~~lGI~~~ghr~kil~~i~~Lr~~~~   72 (78)
T d1x40a1           2 SSVSEVNV-DIKDFLMSI-NLEQYLLHFHESGFTTVKDCAAINDSLL-QKIGISPTGHRRRILKQLQIILSKMQ   72 (78)
T ss_dssp             CCCSTTCC-BHHHHHHTT-TCGGGHHHHHHHTCCBSGGGGGCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             CCcCCCCh-hHHHHHHHC-chHHHHHHHHHcCCCCHHHHHHCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHhCc
Confidence            45667876 799999998 9999999999999975 99999999999 58999 78999999999999999754

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.43  E-value=3.4e-14  Score=98.16  Aligned_cols=61  Identities=16%  Similarity=0.364  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001         123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       123 ~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~  187 (202)
                      .|++.+|.+||.++ ++++|.+.|.++++  +.|+.||++|| +.|||+.|+|+||+.+|++||+
T Consensus         2 ~~g~~~v~~WL~~l-~L~~Y~~~F~~~~~--d~l~~lt~~dL-~~lGI~~GhRkkil~~I~~Lke   62 (62)
T d1oxja1           2 MVGMSGIGLWLKSL-RLHKYIELFKNMTY--EEMLLITEDFL-QSVGVTKGASHKLALCIDKLKE   62 (62)
T ss_dssp             CTTCTTHHHHHHHT-TCGGGGGGGTTCCH--HHHTTCCHHHH-HHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHC-CcHHHHHHHHhCCH--HHHHhCCHHHH-HHcCCCHHHHHHHHHHHHHhcC
Confidence            58999999999998 99999999987766  48999999999 5899988999999999999985

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.8e-11  Score=82.99  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=51.5

Q ss_pred             HHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHH
Q psy2001         129 VCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM  185 (202)
Q Consensus       129 V~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~Ik~L  185 (202)
                      |.+||.++ |+++|.+.|.+++++ -+.+..|+.+|| +.|||+.|+|.||+++|+.|
T Consensus         2 v~~wL~~l-gL~~Y~~~F~~~G~~~l~~l~~lt~eDL-~~lGI~~~hr~kilk~i~~L   57 (57)
T d1dxsa_           2 LVSFLTGL-GCPNCIEYFTSQGLQSIYHLQNLTIEDL-GALKIPEQYRMTIWRGLQDL   57 (57)
T ss_dssp             HHHHHHHT-TCTTSHHHHHTTTCCCHHHHHTCCHHHH-HHTTCCTTTHHHHHHHHHHC
T ss_pred             HHHHHHHC-CcHHHHHHHHHccCCcHHHHHHhhHHHH-HHcCCCHHHHHHHHHHHHhC
Confidence            78999998 999999999999997 799999999999 58999999999999999875

>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ste50p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=2.9e-07  Score=64.78  Aligned_cols=66  Identities=20%  Similarity=0.266  Sum_probs=55.4

Q ss_pred             CCCCHHHHHHHHHhCCCC---hHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001         122 LKWTVTEVCDFIRNLPGC---AEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       122 ~~WTvedV~ewL~sl~Gc---~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~  187 (202)
                      ..||+++|++|..+..|.   ....+.||+|.|+|..|..|+-+|=.+..+=-++-++|+--.|++|+.
T Consensus         1 ~~Ws~deVv~wc~~~L~l~~~d~l~~~lr~n~I~Gd~L~eLtL~DCKeLc~~d~~~aikfKi~iNkl~d   69 (70)
T d1z1va1           1 SQWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINKMRD   69 (70)
T ss_dssp             CCCCHHHHHHHHHHHHCCCTTSHHHHHHHHTTCCTTTGGGCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHhCCCCCChHHHHHHHcCCchhhhhHhhHHHHHHHcCchHHHHHHHHHHHHHhcc
Confidence            369999999999443244   337899999999999999999999976666689999999999999874

>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Ets DNA-binding protein pokkuri (Yan)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.36  E-value=0.00022  Score=50.03  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhc
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAE  190 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~  190 (202)
                      ..+.+++.||.++|..||.-.   -++... ...|   .+||+.|-.|+++|+..... ..|  -.|+..++.|++.+.
T Consensus         4 ~ip~DP~~Wt~~~V~~Wl~w~~~ef~L~~i~~~~F---~m~G~~LC~ls~~dF~~r~p-~~G--diL~~hL~~L~~~~~   76 (77)
T d1sv0a_           4 SLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLF---QMNGKRLCLLTRADFGHRCP-GAG--DVLHNVLQMLIIESH   76 (77)
T ss_dssp             TSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGG---CSCHHHHTTCCHHHHHHHST-TTH--HHHHHHHHHHHHHHH
T ss_pred             CCCCChhhcCHHHHHHHHHHHHHhcCCCCCCcccc---CCCHHHHHcCCHHHHHhHCC-CcH--HHHHHHHHHHHHHhc
Confidence            457899999999999999432   123211 2334   59999999999999975543 445  567999999987653

>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00028  Score=49.05  Aligned_cols=59  Identities=19%  Similarity=0.263  Sum_probs=52.2

Q ss_pred             HHHHHHhCCCChHHHHHHhhcCC-ChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         129 VCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       129 V~ewL~sl~Gc~eyaelFreneI-DGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      |..||.++ ||..|.+.|-++.+ +-..|-.++.+|| ..|.|.-..|.+|++.|.++|+..
T Consensus         6 i~sfLt~L-Gc~~~id~F~~q~l~~v~qLe~~sleDL-~~mkIp~~~r~~IWK~l~e~kq~~   65 (67)
T d1rg6a_           6 IVSFLARL-GCSSCLDYFTTQGLTTIYQIEHYSMDDL-ASLKIPEQFRHAIWKGILDHRQLH   65 (67)
T ss_dssp             HHHHHHHT-TCCSSHHHHHHHTCCSGGGGSSCCHHHH-HTTTCCTHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhc-ChHHHHHHHHHccchhHHHHhhcCHHHH-HcCcCcHHHHHHHHHHHHHHHHhc
Confidence            78999998 99999999987775 5667889999999 579899999999999999999864

>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: GABP-alpha subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00027  Score=51.26  Aligned_cols=68  Identities=13%  Similarity=0.357  Sum_probs=50.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA  189 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~  189 (202)
                      ..+.++..||.++|..||.-.   -++.. .+ |..=.+||+.|-.|+++|+....  +-|+  .|+..+..||+..
T Consensus        18 ~iP~DP~~WT~~~V~~WL~W~~~ef~L~~-v~-~~~F~m~G~~LC~Lt~edF~~r~--p~Gd--iL~~hL~~Lk~~~   88 (91)
T d1sxda_          18 GIPYDPIHWSTDQVLHWVVWVMKEFSMTD-ID-LTTLNISGRELCSLNQEDFFQRV--PRGE--ILWSHLELLRKYV   88 (91)
T ss_dssp             TCCSSGGGCCHHHHHHHHHHHHHHTTCCC-SC-SGGGCSCHHHHHHSCHHHHHHHC--TTCH--HHHHHHHHHHHTT
T ss_pred             CCCCChhhcCHHHHHHHHHHHHHHhCCCC-CC-hhhcCCCHHHHHhCCHHHHHHHC--CChh--HHHHHHHHHHHHH
Confidence            457899999999999999522   13321 11 33336999999999999997544  4476  6999999998764

>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE, CG15085-PA) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Modulator of the activity of Ets (MAE, CG15085-PA)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.03  E-value=0.00054  Score=48.52  Aligned_cols=68  Identities=16%  Similarity=0.180  Sum_probs=45.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHh---CC--CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRN---LP--GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~s---l~--Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..+.+++.||.++|..||+.   .+  ++..  -.+..-.+||+.|-.|++++.+.... ..|+  .|+..++.+-..
T Consensus         6 ~ip~DP~~Wt~~~V~~WL~~~w~~~ef~l~~--~~~~~F~m~G~~LC~ls~edF~~r~P-~~Gd--iL~~~L~~~l~~   78 (82)
T d1sv0c_           6 GLPLDPRDWTRADVWKWLINMAVSEGLEVTA--ELPQKFPMNGKALCLMSLDMYLCRVP-VGGK--MLYRDFRVRLAR   78 (82)
T ss_dssp             SSBSSGGGCCHHHHHHHHHHHHHHHTCCCCT--HHHHTCCSCHHHHHHCCHHHHHHHCT-TTHH--HHHHHHHHHHHH
T ss_pred             CCCcChHhCCHHHHHHHHHHHHHHcCCCCCC--CChhhcCCCHHHHHcCCHHHHHhhCC-CchH--HHHHHHHHHHHH
Confidence            45789999999999999951   12  2322  12444469999999999999974332 2344  456666655443

>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain (Tel SAM) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Etv6 transcription factor pointed domain (Tel SAM)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0006  Score=47.80  Aligned_cols=65  Identities=17%  Similarity=0.330  Sum_probs=46.7

Q ss_pred             CCCCCCCCCHHHHHHHHHhC---CCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001         117 SLPNPLKWTVTEVCDFIRNL---PGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ  187 (202)
Q Consensus       117 ~~snV~~WTvedV~ewL~sl---~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~  187 (202)
                      .+.+++.||.++|..||.=.   -++.. -.+.|   .+||+.|-.|+++|+..... ..|  -.|+..++.||+
T Consensus         8 l~~DP~~Wt~~~V~~WL~w~~~ef~L~~i~~~~F---~m~G~~LC~lt~~dF~~r~p-~~G--diL~~hL~~L~~   76 (77)
T d1ji7a_           8 LRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTF---EMNGKALLLLTKEDFRYRSP-HSG--DELYELLQHILK   76 (77)
T ss_dssp             GCSCGGGCCHHHHHHHHHHHHHHTTCSCCCTTTT---CSCHHHHTTCCHHHHHHHCT-TTH--HHHHHHHHHHHH
T ss_pred             CCCChhhcCHHHHHHHHHHHHHHcCCCCCChhcc---CCCHHHHHcCCHHHHHhHCC-CcH--HHHHHHHHHHHh
Confidence            36799999999999999432   12221 12334   59999999999999975442 334  567899998886

>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Transcriptional regulator ERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0024  Score=46.45  Aligned_cols=69  Identities=17%  Similarity=0.307  Sum_probs=47.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhh-cCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001         116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAM-QEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA  188 (202)
Q Consensus       116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFre-neIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~  188 (202)
                      ..+.++..||.++|..||.-.   .++.. .+ +.. ..|||++|-.|+++++....  .-+.--.|+.++..||+.
T Consensus        22 ~iP~DP~~Wt~~~V~~WL~W~~~ef~L~~-i~-~~~F~~m~G~~LC~lt~edF~~r~--p~~~GdiL~~hL~~Lk~~   94 (97)
T d1sxea_          22 IVPADPTLWSTDHVRQWLEWAVKEYGLPD-VN-ILLFQNIDGKELCKMTKDDFQRLT--PSYNADILLSHLHYLRET   94 (97)
T ss_dssp             SSCSSTTSCCHHHHHHHHHHHHHHHTCSS-CC-GGGSTTCCHHHHTTCCHHHHTTTS--CHHHHHHHHHHHHHHTTS
T ss_pred             CCCCChhhcCHHHHHHHHHHHHHHcCCCC-CC-hhhcCCCCHHHHHhcCHHHHHHHc--CCCchhHHHHHHHHHHHc
Confidence            557899999999999999532   12221 11 222 36999999999999985211  222345688888888864