Diaphorina citri psyllid: psy2296


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIEDVTKELAQNNEALEKSMVGRGDSKNREDFLQEVGNISKELELINKELEKYKNNDPDTLKLIENTAQRAKEAANRWTDNLFSLKSWCKNKFGLEETALNKHFSIPEEMDYID
ccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHccccccccccccCEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccc
**************GLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKASDRVDCKLEKITAEIE******************************************************P**LKLIENTAQRAKEAANRWTDNLFSLKSWCKNKFGLEETALNKHFSIPEEMDYID
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MSKKKGLSVEEKRTGLLELFHEKEEFFQLKLIIELEKLAPKEKGIISQSVKEILQSLVDDGLVESEKIGTSTYFWSFPNKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEKSMVGRGDSKNREDFLQExxxxxxxxxxxxxxxxxxxxxDPDTxxxxxxxxxxxxxxxxxxxxxLFSLKSWCKNKFGLEETALNKHFSIPEEMDYID

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Meiotic nuclear division protein 1 homolog Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Stimulates both DMC1- and RAD51-mediated homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks.confidentQ32L19
Meiotic nuclear division protein 1 homolog Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis (By similarity). Stimulates both DMC1- and RAD51-mediated homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks.confidentQ9BWT6
Meiotic nuclear division protein 1 homolog Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Stimulates both DMC1- and RAD51-mediated homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks.confidentQ8K396

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0000790 [CC]nuclear chromatinprobableGO:0031974, GO:0043229, GO:0043228, GO:0000785, GO:0000228, GO:0043227, GO:0043226, GO:0044446, GO:0031981, GO:0005634, GO:0044454, GO:0005694, GO:0043231, GO:0043232, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0070013, GO:0044428, GO:0044424, GO:0044427, GO:0044422
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0000794 [CC]condensed nuclear chromosomeprobableGO:0031974, GO:0043229, GO:0043228, GO:0000228, GO:0043227, GO:0043226, GO:0044446, GO:0031981, GO:0005634, GO:0005694, GO:0000793, GO:0043231, GO:0043232, GO:0043233, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0070013, GO:0044428, GO:0044424, GO:0044422
GO:0003677 [MF]DNA bindingprobableGO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488
GO:0009553 [BP]embryo sac developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0048856, GO:0008150, GO:0007275, GO:0044699, GO:0048229
GO:0007129 [BP]synapsisprobableGO:0006996, GO:0007126, GO:0007127, GO:0051321, GO:0070192, GO:0071840, GO:0009987, GO:0016043, GO:0008150, GO:0048610, GO:0022402, GO:0044699, GO:0044763, GO:0000003, GO:0007049, GO:0051276
GO:0006310 [BP]DNA recombinationprobableGO:0006139, GO:0044260, GO:0044238, GO:0009987, GO:0006725, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0034641, GO:0006807, GO:0008150, GO:0008152, GO:0006259, GO:1901360, GO:0046483

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XUB, chain A
Confidence level:probable
Coverage over the Query: 12-63,77-184
View the alignment between query and template
View the model in PyMOL
Template: 4AIK, chain A
Confidence level:probable
Coverage over the Query: 5-92,107-141
View the alignment between query and template
View the model in PyMOL
Template: 1FS1, chain B
Confidence level:probable
Coverage over the Query: 149-199
View the alignment between query and template
View the model in PyMOL