Diaphorina citri psyllid: psy2301

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
MALMEAGVEMKHRGGIGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGIEE
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccHHHHHcccccccc
***************IGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKEL**********************IELLTQEISRMFNGCHQLIQK***********REKRLAYNVISSLVTNLQQKSIQFR****************************************************************************RIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTG***
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MALMEAGVEMKHRGGIGNTVSYFDSRAAPIWTDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGIEE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Syntaxin-16 SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.confidentO14662
Syntaxin-42 Vesicle trafficking protein that functions in the secretory pathway.confidentQ9SWH4
t-SNARE affecting a late Golgi compartment protein 2 t-SNARE that functions in transport from the endosome to the late Golgi and on the endocytic pathway.confidentQ9P6P1

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0044444 [CC]cytoplasmic partprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1DN1, chain B
Confidence level:very confident
Coverage over the Query: 25-155,173-260
View the alignment between query and template
View the model in PyMOL