Psyllid ID: psy2301

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
MALMEAGVEMKHRGGIGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGIEE
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccHHHHHHcccccccc
cccEccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccHEHHHHccccccccccHEHHHHccccccc
MALMEAGVEMkhrggigntvsyfdsraapiwtDALEETQYALPRLENKLKELEKLQEshllrptldesteQETKIELLTQEISRMFNGCHQLIQKIKhqssdaytsrEKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREErskmyfdedtptdqyMTSNLMDLWQENDNEMIDRqfessrpgvskTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDkeslftyrpiylqaylptglftyrpiylqaylptglftyrpiylqaylptgiee
MALMEAGVemkhrggigntvsyFDSRAAPIWTDALEETQYALPRLENKLKELEKLQEshllrptldesteqeTKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKiktreerskmyfdedtptdqYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGIEE
MALMEAGVEMKHRGGIGNTVSYFDSRAAPIWTDALEETQYAlprlenklkeleklqeshllRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMAcilclasttlillillilDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGIEE
*************GGIGNTVSYFDSRAAPIWTDALEETQYALPR******************************IELLTQEISRMFNGCHQLIQKIKH*****YTSREKRLAYNVISSLVTNLQQK*I************************************************************************************EVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPT****
******************************WTDALEETQYALPRLENKLKEL*************************LTQEISRMFNGCH*************************ISSLVTNLQQKSIQFR****************************************************************************RIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESL*********************IYLQAYLPTGLFTYRPIYLQAYLPTG***
********EMKHRGGIGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQK***********REKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQF***********QQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGIEE
*********M*****IGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTRE***************************NDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTG***
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALMEAGVEMKHRGGIGNTVSYFDSRAAPIWTDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKMACILCLASTTLILLILLILDKESLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGLFTYRPIYLQAYLPTGIEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query350 2.2.26 [Sep-21-2011]
O14662325 Syntaxin-16 OS=Homo sapie yes N/A 0.711 0.766 0.423 1e-51
Q8BVI5326 Syntaxin-16 OS=Mus muscul yes N/A 0.714 0.766 0.409 4e-51
Q9SWH4323 Syntaxin-42 OS=Arabidopsi yes N/A 0.714 0.773 0.318 6e-28
Q9P6P1301 t-SNARE affecting a late yes N/A 0.731 0.850 0.312 4e-26
O65359322 Syntaxin-41 OS=Arabidopsi no N/A 0.682 0.742 0.308 1e-25
Q9SUJ1331 Syntaxin-43 OS=Arabidopsi no N/A 0.691 0.731 0.303 1e-25
Q08144397 T-SNARE affecting a late yes N/A 0.728 0.642 0.251 4e-14
O70439261 Syntaxin-7 OS=Mus musculu no N/A 0.471 0.632 0.306 1e-13
Q86Y82276 Syntaxin-12 OS=Homo sapie no N/A 0.268 0.340 0.401 1e-11
Q5RBW6276 Syntaxin-12 OS=Pongo abel no N/A 0.268 0.340 0.401 2e-11
>sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 Back     alignment and function desciption
 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/276 (42%), Positives = 170/276 (61%), Gaps = 27/276 (9%)

Query: 1   MALMEAGVEMKHRGGIGNTVSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHL 60
           MAL+ +G+ +     IG T      R  P W D ++E QY + R++ K+KEL  L + HL
Sbjct: 54  MALV-SGISLDPEAAIGVT-----KRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHL 107

Query: 61  LRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLV 120
            RPTLD+S+E+E  IE+ TQEI+++F+ C + +Q +  ++  A + +E RL  NV++SL 
Sbjct: 108 NRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRAR-ACSEQEGRLLGNVVASLA 166

Query: 121 TNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDR 180
             LQ+ S  FR  QS YL ++K REERS+ +FD   P        LMD    +DN +  R
Sbjct: 167 QALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVP--------LMD--DGDDNTLYHR 216

Query: 181 QFESSRPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGT 240
            F         T+ QL+L+E+ N      R +E+  IV+SI DLN +F+DL  M+V QGT
Sbjct: 217 GF---------TEDQLVLVEQ-NTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGT 266

Query: 241 ILDRIDYNVERTEIEVKQGYQQLAKAERYHRKNRKM 276
           +LDRIDYNVE++ I+ + G +QL KAE+Y +KNRKM
Sbjct: 267 VLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKM 302
SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.
Homo sapiens (taxid: 9606)
>sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 Back     alignment and function description
>sp|Q9SWH4|SYP42_ARATH Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1 Back     alignment and function description
>sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1 Back     alignment and function description
>sp|O65359|SYP41_ARATH Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1 Back     alignment and function description
>sp|Q9SUJ1|SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 Back     alignment and function description
>sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 Back     alignment and function description
>sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3 Back     alignment and function description
>sp|Q86Y82|STX12_HUMAN Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1 Back     alignment and function description
>sp|Q5RBW6|STX12_PONAB Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
242020356312 syntaxin-16, putative [Pediculus humanus 0.76 0.852 0.509 1e-63
405966791331 Syntaxin-16 [Crassostrea gigas] 0.774 0.818 0.454 4e-59
253314474337 syntaxin 16 [Acyrthosiphon pisum] 0.825 0.857 0.437 6e-57
270010473279 hypothetical protein TcasGA2_TC009870 [T 0.745 0.935 0.503 5e-56
195432801353 GK19716 [Drosophila willistoni] gi|19416 0.774 0.767 0.424 1e-55
321473835311 hypothetical protein DAPPUDRAFT_194044 [ 0.702 0.790 0.455 2e-55
380011857325 PREDICTED: syntaxin-16-like [Apis florea 0.768 0.827 0.431 4e-54
195134234352 GI11088 [Drosophila mojavensis] gi|19390 0.771 0.767 0.427 5e-54
110756163325 PREDICTED: syntaxin-16 [Apis mellifera] 0.768 0.827 0.431 5e-54
332376895309 unknown [Dendroctonus ponderosae] 0.728 0.825 0.486 7e-54
>gi|242020356|ref|XP_002430621.1| syntaxin-16, putative [Pediculus humanus corporis] gi|212515793|gb|EEB17883.1| syntaxin-16, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/275 (50%), Positives = 191/275 (69%), Gaps = 9/275 (3%)

Query: 25  SRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISR 84
           S   P WTD +EE QYAL RL +K++EL+ L + +L RPTL++S + + +IE+LT++ISR
Sbjct: 47  SSIPPAWTDQVEECQYALIRLNSKIQELDNLHKKNLHRPTLNDSADDQHQIEVLTRDISR 106

Query: 85  MFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTR 144
           MF+ CH+L+  IK QS +  ++ E+ LA NV++SL  +LQ  S  FR  Q++YL  I  R
Sbjct: 107 MFSNCHKLLNTIKKQSQNG-SNTERNLAKNVMASLAASLQNSSNTFRKTQNNYLKTIDLR 165

Query: 145 EERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNA 204
           EERSK Y +     DQ    NL+D    N+ + ID+ F   +  +  TQQQLLL+EEDN 
Sbjct: 166 EERSKKYLN---VLDQDYDLNLID----NEVDNIDQIFGRGQSHLM-TQQQLLLLEEDNM 217

Query: 205 AQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLA 264
             A  R +EV  IVKSIVDLN ++KD + MV HQGTILDRIDYN+E+T ++V +G+QQL 
Sbjct: 218 RLAEKREEEVKQIVKSIVDLNQIYKDFAQMVTHQGTILDRIDYNIEKTSVQVHEGFQQLQ 277

Query: 265 KAERYHRKNRKMACILCLASTTLILLILLILDKES 299
           KAERY +KNRKM+CI+CLA T L L ILL++ K +
Sbjct: 278 KAERYQKKNRKMSCIICLAVTVLFLFILLVIVKSN 312

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|405966791|gb|EKC32029.1| Syntaxin-16 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|253314474|ref|NP_001156604.1| syntaxin 16 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|270010473|gb|EFA06921.1| hypothetical protein TcasGA2_TC009870 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195432801|ref|XP_002064405.1| GK19716 [Drosophila willistoni] gi|194160490|gb|EDW75391.1| GK19716 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|321473835|gb|EFX84801.1| hypothetical protein DAPPUDRAFT_194044 [Daphnia pulex] Back     alignment and taxonomy information
>gi|380011857|ref|XP_003690010.1| PREDICTED: syntaxin-16-like [Apis florea] Back     alignment and taxonomy information
>gi|195134234|ref|XP_002011542.1| GI11088 [Drosophila mojavensis] gi|193906665|gb|EDW05532.1| GI11088 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|110756163|ref|XP_001121691.1| PREDICTED: syntaxin-16 [Apis mellifera] Back     alignment and taxonomy information
>gi|332376895|gb|AEE63587.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
MGI|MGI:1923396326 Stx16 "syntaxin 16" [Mus muscu 0.431 0.463 0.356 2.9e-44
UNIPROTKB|B7ZBM7251 STX16 "Syntaxin-16" [Homo sapi 0.52 0.725 0.338 3.7e-44
UNIPROTKB|C9K0W8308 STX16 "Uncharacterized protein 0.52 0.590 0.338 3.7e-44
UNIPROTKB|G8JLE0325 STX16 "Syntaxin-16" [Homo sapi 0.52 0.56 0.338 3.7e-44
UNIPROTKB|O14662325 STX16 "Syntaxin-16" [Homo sapi 0.52 0.56 0.338 3.7e-44
RGD|1309423326 Stx16 "syntaxin 16" [Rattus no 0.431 0.463 0.350 1.2e-43
UNIPROTKB|F1LRK6273 Stx16 "Protein Stx16" [Rattus 0.431 0.553 0.350 1.2e-43
UNIPROTKB|B7ZBM8219 STX16 "Syntaxin-16" [Homo sapi 0.414 0.662 0.357 3.8e-33
UNIPROTKB|F8W9Z6204 STX16 "Syntaxin-16" [Homo sapi 0.52 0.892 0.338 3.7e-29
FB|FBgn0031106375 Syx16 "Syntaxin 16" [Drosophil 0.294 0.274 0.613 2.2e-27
MGI|MGI:1923396 Stx16 "syntaxin 16" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 256 (95.2 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 56/157 (35%), Positives = 87/157 (55%)

Query:     1 MALMEAGVEMKHRGGIGNTVSYFDSRAAPIWTDALEETQYAXXXXXXXXXXXXXXXXXXX 60
             MAL+ +G+ +     IG T      R+ P W D ++E QY                    
Sbjct:    54 MALV-SGISLDPEAAIGVT-----KRSPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHL 107

Query:    61 XRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLV 120
              RPTLD+S+E+E  IE+ TQE++++F+ C + +Q +  ++  A + +E+RL  NV++SL 
Sbjct:   108 NRPTLDDSSEEEHAIEITTQEVTQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLA 167

Query:   121 TNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTP 157
               LQ+ S  FR  QS YL ++K REERS+ +FD   P
Sbjct:   168 QALQELSTSFRHAQSDYLKRMKNREERSQHFFDTPVP 204
GO:0005484 "SNAP receptor activity" evidence=ISO
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0031201 "SNARE complex" evidence=ISO
GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO
UNIPROTKB|B7ZBM7 STX16 "Syntaxin-16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9K0W8 STX16 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G8JLE0 STX16 "Syntaxin-16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O14662 STX16 "Syntaxin-16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309423 Stx16 "syntaxin 16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRK6 Stx16 "Protein Stx16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZBM8 STX16 "Syntaxin-16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W9Z6 STX16 "Syntaxin-16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0031106 Syx16 "Syntaxin 16" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O14662STX16_HUMANNo assigned EC number0.42390.71140.7661yesN/A
Q8BVI5STX16_MOUSENo assigned EC number0.40940.71420.7668yesN/A
Q9SWH4SYP42_ARATHNo assigned EC number0.31860.71420.7739yesN/A
Q9P6P1TLG2_SCHPONo assigned EC number0.31250.73140.8504yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 2e-25
pfam0573962 pfam05739, SNARE, SNARE domain 3e-15
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 6e-12
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 6e-11
pfam00804103 pfam00804, Syntaxin, Syntaxin 7e-08
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 2e-07
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  103 bits (258), Expect = 2e-25
 Identities = 60/275 (21%), Positives = 115/275 (41%), Gaps = 28/275 (10%)

Query: 24  DSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEIS 83
           D    P +  +       L  +   +  L K+   H   P+  + +E+E +I+ L+++++
Sbjct: 29  DDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTE-PSFSDKSEKEDEIDELSKKVN 87

Query: 84  RMFNGCHQLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKT 143
           +    C ++++        ++   +     N        +QQKS QFR  Q      ++ 
Sbjct: 88  QDLQRCEKILKTKYKNLQSSFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN 147

Query: 144 REERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDN 203
           +                       D     + E    +   S  G  +T QQ  L  E+ 
Sbjct: 148 KNN---------------------DQHPLEEEE---DEESLSSLGSQQTLQQQGLSNEEL 183

Query: 204 AAQARI---RSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGY 260
             Q  +   R +E+ ++ + I +LN +F+DL  +V  QG ++DRID+N+E T   +K   
Sbjct: 184 EYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNAN 243

Query: 261 QQLAKAERYHRKNRKMACILCLASTTLILLILLIL 295
           ++L KA  + R+ +K    L L    ++L + LI 
Sbjct: 244 KELEKAPAHQRRTKKCRFYLLLILLVVLLFVSLIK 278

Length = 283
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 350
KOG0809|consensus305 100.0
KOG0810|consensus297 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0811|consensus269 99.97
KOG0812|consensus311 99.97
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.96
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.63
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.57
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.44
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.39
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.38
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.33
KOG3202|consensus235 99.27
KOG3894|consensus316 98.8
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.51
KOG0810|consensus297 98.05
KOG3385|consensus118 97.76
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 97.71
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.37
KOG0860|consensus116 96.9
KOG1666|consensus220 96.5
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.38
KOG0811|consensus269 96.28
KOG3065|consensus273 94.76
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 93.61
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 93.15
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 92.43
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 91.93
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 91.69
PF1116698 DUF2951: Protein of unknown function (DUF2951); In 90.81
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 89.02
PF14992280 TMCO5: TMCO5 family 88.92
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 87.11
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 86.22
KOG3251|consensus213 85.96
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 84.69
KOG0964|consensus 1200 84.21
KOG0860|consensus116 84.02
KOG3202|consensus235 81.65
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 80.82
>KOG0809|consensus Back     alignment and domain information 
Probab=100.00  E-value=4e-44  Score=323.42  Aligned_cols=251  Identities=42%  Similarity=0.660  Sum_probs=219.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q psy2301          26 RAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYT  105 (350)
Q Consensus        26 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~  105 (350)
                      ++||.|.+.+++|+..+..++.++++|.+.|.|++ .|+|+|++..+.+|+.++.+|+++++.|++.|+.++...+... 
T Consensus        54 ~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~-  131 (305)
T KOG0809|consen   54 GLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLS-  131 (305)
T ss_pred             CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-
Confidence            57999999999999999999999999999999999 6999999988999999999999999999999999988765333 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccHHHHHhhhhcC
Q psy2301         106 SREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESS  185 (350)
Q Consensus       106 ~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~  185 (350)
                      +.+.-+++|++..+..+++.++.+||..|..|.++++.+.++...+.....++   +        +..+++.+.+.-   
T Consensus       132 ~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~---~--------~~~dd~d~~~~~---  197 (305)
T KOG0809|consen  132 PSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNT---V--------DLPDDEDFSDRT---  197 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhcccc---c--------cCcchhhhhhhh---
Confidence            46788889999999999999999999999999999999988766654321111   1        111223332211   


Q ss_pred             CCCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2301         186 RPGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAK  265 (350)
Q Consensus       186 ~~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~~~v~~g~~eL~k  265 (350)
                           ++++|++.+ +++...+++|++||.++.+||.||++||+||+.||.+||.+||||||||+++..+++.|.++|.|
T Consensus       198 -----~qe~ql~~~-e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~K  271 (305)
T KOG0809|consen  198 -----FQEQQLMLF-ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHK  271 (305)
T ss_pred             -----HHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHH
Confidence                 256677766 56889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHHHhh
Q psy2301         266 AERYHRKNRKMACILCLASTTLILLILLILDKE  298 (350)
Q Consensus       266 A~~~qk~~rk~~~i~~li~iIiiiii~liv~k~  298 (350)
                      |..|||+++|++|||+|+++||++++++|+.++
T Consensus       272 Ae~yQk~~~k~~~i~~L~l~ii~llvllilk~~  304 (305)
T KOG0809|consen  272 AERYQKRNKKMKVILMLTLLIIALLVLLILKKL  304 (305)
T ss_pred             HHHHHhcCCceEehHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999988887654

>KOG0810|consensus Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811|consensus Back     alignment and domain information
>KOG0812|consensus Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202|consensus Back     alignment and domain information
>KOG3894|consensus Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG0810|consensus Back     alignment and domain information
>KOG3385|consensus Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0860|consensus Back     alignment and domain information
>KOG1666|consensus Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0811|consensus Back     alignment and domain information
>KOG3065|consensus Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF14992 TMCO5: TMCO5 family Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>KOG3251|consensus Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>KOG0964|consensus Back     alignment and domain information
>KOG0860|consensus Back     alignment and domain information
>KOG3202|consensus Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 5e-08
1gl2_B65 Crystal Structure Of An Endosomal Snare Core Comple 4e-07
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 1e-05
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 3e-05
3b5n_B69 Structure Of The Yeast Plasma Membrane Snare Comple 1e-04
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 2e-04
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 6e-04
1jth_B77 Crystal Structure And Biophysical Properties Of A C 6e-04
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 7e-04
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 209 IRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLAKAER 268
           +R   +  +   I+D+N +FKDL+ M+  QG ++D I+ NVE +E+ V++   QL +A  
Sbjct: 3   MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAY 62
Query: 269 YHRKNRK 275
           Y +K+RK
Sbjct: 63  YQKKSRK 69
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex Length = 65 Back     alignment and structure
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex Length = 69 Back     alignment and structure
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 4e-38
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 2e-36
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 8e-26
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 2e-22
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 5e-22
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 2e-19
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 7e-19
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 8e-19
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 4e-18
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 4e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  136 bits (343), Expect = 4e-38
 Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 22/255 (8%)

Query: 29  PIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNG 88
             + + +EE +  + ++   ++E+++   + L  P  DE T++E  +E L  +I +  N 
Sbjct: 31  DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEE--LEELMSDIKKTANK 88

Query: 89  CHQLIQKIK----HQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTR 144
               ++ I+     +     +S + R+     S+L     +   ++ + QS Y  + K R
Sbjct: 89  VRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 148

Query: 145 EERSKMYFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNA 204
            +R        T +++          ++         F S     S   +Q L   E   
Sbjct: 149 IQRQLEITGRTTTSEEL---------EDMLESGNPAIFASGIIMDSSISKQALSEIET-- 197

Query: 205 AQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTEIEVKQGYQQLA 264
                R  E+  +  SI +L+ +F D++ +V  QG ++DRI+YNVE     V++      
Sbjct: 198 -----RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 252

Query: 265 KAERYHRKNRKMACI 279
           KA +Y  K R+   +
Sbjct: 253 KAVKYQSKARRKKIM 267
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.96
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.95
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.92
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.9
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.89
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.88
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.87
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.83
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.83
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.68
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.64
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 98.83
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.8
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.62
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.58
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 97.45
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 97.41
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.38
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 97.25
3b5n_D64 Protein transport protein SEC9; snare complex, syn 97.17
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 96.89
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.69
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 96.56
3b5n_C70 Protein transport protein SEC9; snare complex, syn 96.07
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 95.52
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 95.43
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 93.45
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 90.86
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 90.8
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 81.97
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 80.81
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 80.65
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=8.5e-41  Score=310.03  Aligned_cols=240  Identities=21%  Similarity=0.332  Sum_probs=182.2

Q ss_pred             ccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2301          20 VSYFDSRAAPIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQ   99 (350)
Q Consensus        20 ~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~   99 (350)
                      |.+.+...||.|++.|++|+..|..|+.++++|+++|+++++.+..+  ...+.+++.++.+|+++++.|+.+|+.|+..
T Consensus        22 ~~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~--~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~   99 (267)
T 1dn1_B           22 VTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD--EKTKEELEELMSDIKKTANKVRSKLKSIEQS   99 (267)
T ss_dssp             -----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999998755443  3567899999999999999999999999765


Q ss_pred             cC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhccccccccccH
Q psy2301         100 SS----DAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQENDN  175 (350)
Q Consensus       100 ~~----~~~~~~e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (350)
                      ..    ...++++.|+|++++..|..+|++++.+|+..|..|++++|.++.|+.++++++                 .++
T Consensus       100 ~~~~~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~-----------------~td  162 (267)
T 1dn1_B          100 IEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRT-----------------TTS  162 (267)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------CCH
T ss_pred             HhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCC-----------------CCH
Confidence            21    123356789999999999999999999999999999999999999999987753                 133


Q ss_pred             HHHHhhhhcCCCCccccHHHHHH--hhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHH
Q psy2301         176 EMIDRQFESSRPGVSKTQQQLLL--MEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQGTILDRIDYNVERTE  253 (350)
Q Consensus       176 ~~ie~~~~~~~~~~~~~qqql~~--~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQge~IDrId~Nve~a~  253 (350)
                      +.++.++++|++.+ |++..++.  .....+.++++||++|.+||++|.|||+||+|||.||++||++||+||+||++|.
T Consensus       163 eeie~~ie~g~~~~-f~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~  241 (267)
T 1dn1_B          163 EELEDMLESGNPAI-FASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV  241 (267)
T ss_dssp             HHHHHHHHTCSSCT-TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred             HHHHHHHhCCcHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45555555554432 22210100  0045789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccchhHHH
Q psy2301         254 IEVKQGYQQLAKAERYHRKNRKMACI  279 (350)
Q Consensus       254 ~~v~~g~~eL~kA~~~qk~~rk~~~i  279 (350)
                      .||++|+.+|.+|.+|||++|||+||
T Consensus       242 ~~v~~~~~~l~kA~~~q~~~rkk~~~  267 (267)
T 1dn1_B          242 DYVERAVSDTKKAVKYQSKARRKKIM  267 (267)
T ss_dssp             CCCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            99999999999999999999999986
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 350
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 5e-20
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.4 bits (208), Expect = 5e-20
 Identities = 24/208 (11%), Positives = 69/208 (33%), Gaps = 19/208 (9%)

Query: 31  WTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCH 90
           + + + +    L + ++ + +++ L +  L     ++++     ++    + + +     
Sbjct: 7   FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLK 66

Query: 91  QLIQKIKHQSSDAYTSREKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKM 150
             I+  +         +          +      +    +R + S+Y  + K + +R  M
Sbjct: 67  NEIKSAQRDGIHDTNKQ------AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM 120

Query: 151 YFDEDTPTDQYMTSNLMDLWQENDNEMIDRQFESSRPGVSKTQQQLLLMEEDNAAQARIR 210
               +   D+                 I           +          +   A+ + R
Sbjct: 121 IIQPEATEDE-------------VEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQAR 167

Query: 211 SQEVDHIVKSIVDLNHLFKDLSHMVVHQ 238
            QE+  + KS+ +L  LF D+  +V+ Q
Sbjct: 168 HQELLKLEKSMAELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.88
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.58
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 93.82
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 92.66
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.7e-22  Score=175.54  Aligned_cols=192  Identities=12%  Similarity=0.217  Sum_probs=146.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchH
Q psy2301          28 APIWTDALEETQYALPRLENKLKELEKLQESHLLRPTLDESTEQETKIELLTQEISRMFNGCHQLIQKIKHQSSDAYTSR  107 (350)
Q Consensus        28 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~d~~~~~~~I~~l~~~I~~~~~~i~~~I~~l~~~~~~~~~~~  107 (350)
                      .+.|++.+++|+..|..|+..++.|.+++.+.+..+..++....+.+++.++.+++.+++.|+..++.++....      
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~------   77 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI------   77 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------
Confidence            46899999999999999999999999999998754444444567889999999999999999999998876532      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhcccccccc-ccHHHHHhhhhcCC
Q psy2301         108 EKRLAYNVISSLVTNLQQKSIQFRSMQSSYLNKIKTREERSKMYFDEDTPTDQYMTSNLMDLWQE-NDNEMIDRQFESSR  186 (350)
Q Consensus       108 e~rir~n~~~~L~~kl~~i~~~fq~~q~~~~~~~k~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ie~~~~~~~  186 (350)
                      +.+++++++..|..+|.+++..|+..|..|.+++|.+..|+..+.+++.+.. ....    ...+ ..........    
T Consensus        78 ~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~----  148 (196)
T d1fioa_          78 HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATED-EVEA----AISDVGGQQIFSQAL----  148 (196)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHH-HHHH----HTSHHHHHHHHHHHT----
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccch-hhhH----hhccccchHHHHHHH----
Confidence            3578899999999999999999999999999999999999998877642110 0100    0000 0001111100    


Q ss_pred             CCccccHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q psy2301         187 PGVSKTQQQLLLMEEDNAAQARIRSQEVDHIVKSIVDLNHLFKDLSHMVVHQG  239 (350)
Q Consensus       187 ~~~~~~qqql~~~~~~~~~~i~eR~~eI~~IE~sI~EL~~iF~dLa~LV~eQg  239 (350)
                          +........ ...+.++++|+++|.+||++|.|||+||+|||+||++|.
T Consensus       149 ----~~~~~~~~~-~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         149 ----LNANRRGEA-KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             ----C------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             ----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence                011111111 457789999999999999999999999999999999994
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure