Diaphorina citri psyllid: psy2684


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL
ccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHcEEEEEEcccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHccccccccccccccccEEEEccccccccccEEEEEcEEEEcccccccEEcccccccccccEEEEccccccHHHHHHHHHcccccccccEEEEEEccccccccHHcccccccccccHHHHHHcccccccccccccccccEEECccccccccccccccHHHHHHHHccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcc
*****TK*FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKR**************RE*KSQGMSKEKAERQHS*******************PKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT******RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL
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MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFxxxxxxxxxxxxxxxxxxxxxxxxxxxxGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
ATP-binding cassette sub-family F member 1 Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.confidentQ6P542
ATP-binding cassette sub-family F member 1 Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.confidentQ767L0
ATP-binding cassette sub-family F member 1 Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.confidentQ7YR37

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0005840 [CC]ribosomeprobableGO:0005737, GO:0032991, GO:0043232, GO:0044464, GO:0043229, GO:0005623, GO:0030529, GO:0005575, GO:0044444, GO:0043228, GO:0044424, GO:0005622, GO:0043226

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2IW3, chain A
Confidence level:very confident
Coverage over the Query: 5-104,119-123,146-241
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Template: 3G5U, chain A
Confidence level:very confident
Coverage over the Query: 179-248,281-356
View the alignment between query and template
View the model in PyMOL
Template: 2IX8, chain A
Confidence level:confident
Coverage over the Query: 9-128,179-237
View the alignment between query and template
View the model in PyMOL
Template: 1ZP6, chain A
Confidence level:probable
Coverage over the Query: 246-355
View the alignment between query and template
View the model in PyMOL
Template: 3LVG, chain D
Confidence level:probable
Coverage over the Query: 99-165
View the alignment between query and template
View the model in PyMOL